Multiple sequence alignment - TraesCS3D01G402000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G402000 chr3D 100.000 4535 0 0 1 4535 516421453 516425987 0.000000e+00 8375.0
1 TraesCS3D01G402000 chr3D 86.972 568 46 12 3972 4533 516665318 516665863 8.340000e-172 614.0
2 TraesCS3D01G402000 chr3A 94.914 1809 64 9 352 2139 651635613 651633812 0.000000e+00 2806.0
3 TraesCS3D01G402000 chr3A 95.301 830 23 4 2135 2957 651628684 651627864 0.000000e+00 1303.0
4 TraesCS3D01G402000 chr3A 95.735 680 21 4 3861 4535 651626989 651626313 0.000000e+00 1088.0
5 TraesCS3D01G402000 chr3A 92.994 314 13 2 3538 3842 651627434 651627121 2.490000e-122 449.0
6 TraesCS3D01G402000 chr5B 93.750 1680 70 21 688 2343 631796664 631794996 0.000000e+00 2488.0
7 TraesCS3D01G402000 chr5B 90.840 1572 68 30 2325 3821 631794811 631793241 0.000000e+00 2036.0
8 TraesCS3D01G402000 chr5B 91.667 108 8 1 3437 3543 631793584 631793477 1.020000e-31 148.0
9 TraesCS3D01G402000 chr5B 98.182 55 1 0 3861 3915 284367648 284367702 3.730000e-16 97.1
10 TraesCS3D01G402000 chr3B 94.106 1476 49 21 2411 3860 680754865 680756328 0.000000e+00 2209.0
11 TraesCS3D01G402000 chr3B 93.218 811 36 7 1127 1921 680753643 680754450 0.000000e+00 1175.0
12 TraesCS3D01G402000 chr3B 97.115 416 10 1 1951 2366 680754453 680754866 0.000000e+00 701.0
13 TraesCS3D01G402000 chr3B 84.859 568 53 15 3975 4533 681008327 681007784 3.990000e-150 542.0
14 TraesCS3D01G402000 chr3B 93.168 322 17 4 4217 4535 680756539 680756858 6.870000e-128 468.0
15 TraesCS3D01G402000 chr3B 96.774 217 6 1 384 600 680751134 680751349 1.200000e-95 361.0
16 TraesCS3D01G402000 chr3B 92.896 183 7 2 945 1127 680751350 680751526 1.250000e-65 261.0
17 TraesCS3D01G402000 chr5A 85.914 1576 142 32 1229 2764 631468277 631466742 0.000000e+00 1607.0
18 TraesCS3D01G402000 chr5A 83.760 1016 105 30 2839 3821 631466727 631465739 0.000000e+00 907.0
19 TraesCS3D01G402000 chr5A 90.066 604 46 10 722 1314 631468875 631468275 0.000000e+00 771.0
20 TraesCS3D01G402000 chr5A 89.198 324 22 9 722 1035 631469452 631469132 4.250000e-105 392.0
21 TraesCS3D01G402000 chr5A 88.272 162 13 3 527 688 669809169 669809324 5.990000e-44 189.0
22 TraesCS3D01G402000 chr5A 98.214 56 1 0 3861 3916 463712293 463712348 1.040000e-16 99.0
23 TraesCS3D01G402000 chr5D 85.262 1547 137 40 1236 2753 502878858 502877374 0.000000e+00 1509.0
24 TraesCS3D01G402000 chr5D 89.625 1012 72 10 2839 3821 502877349 502876342 0.000000e+00 1256.0
25 TraesCS3D01G402000 chr5D 90.924 595 41 8 702 1284 502879491 502878898 0.000000e+00 787.0
26 TraesCS3D01G402000 chr5D 98.847 347 4 0 1 347 52383501 52383155 1.790000e-173 619.0
27 TraesCS3D01G402000 chr5D 98.559 347 5 0 1 347 355792214 355791868 8.340000e-172 614.0
28 TraesCS3D01G402000 chr6D 99.712 347 1 0 1 347 463673865 463674211 1.780000e-178 636.0
29 TraesCS3D01G402000 chr1D 99.712 347 1 0 1 347 303064649 303064995 1.780000e-178 636.0
30 TraesCS3D01G402000 chr1D 95.767 189 8 0 500 688 348898190 348898378 5.700000e-79 305.0
31 TraesCS3D01G402000 chr1D 92.547 161 10 1 352 510 348841303 348841463 3.530000e-56 230.0
32 TraesCS3D01G402000 chr7D 99.135 347 3 0 1 347 111110879 111111225 3.850000e-175 625.0
33 TraesCS3D01G402000 chr7D 98.847 347 4 0 1 347 609707002 609706656 1.790000e-173 619.0
34 TraesCS3D01G402000 chr7D 98.559 347 5 0 1 347 564167373 564167719 8.340000e-172 614.0
35 TraesCS3D01G402000 chr7D 98.271 347 6 0 1 347 400167202 400166856 3.880000e-170 608.0
36 TraesCS3D01G402000 chr2D 98.559 347 5 0 1 347 163348200 163348546 8.340000e-172 614.0
37 TraesCS3D01G402000 chr7B 98.182 55 1 0 3861 3915 623567211 623567265 3.730000e-16 97.1
38 TraesCS3D01G402000 chr7B 88.750 80 4 5 3862 3939 624782579 624782503 4.830000e-15 93.5
39 TraesCS3D01G402000 chr4A 98.182 55 1 0 3861 3915 662286995 662287049 3.730000e-16 97.1
40 TraesCS3D01G402000 chr2B 98.182 55 1 0 3860 3914 240185116 240185062 3.730000e-16 97.1
41 TraesCS3D01G402000 chr2B 96.491 57 2 0 3862 3918 316008146 316008202 1.340000e-15 95.3
42 TraesCS3D01G402000 chr1B 98.182 55 1 0 3861 3915 19018585 19018639 3.730000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G402000 chr3D 516421453 516425987 4534 False 8375.000000 8375 100.000000 1 4535 1 chr3D.!!$F1 4534
1 TraesCS3D01G402000 chr3D 516665318 516665863 545 False 614.000000 614 86.972000 3972 4533 1 chr3D.!!$F2 561
2 TraesCS3D01G402000 chr3A 651633812 651635613 1801 True 2806.000000 2806 94.914000 352 2139 1 chr3A.!!$R1 1787
3 TraesCS3D01G402000 chr3A 651626313 651628684 2371 True 946.666667 1303 94.676667 2135 4535 3 chr3A.!!$R2 2400
4 TraesCS3D01G402000 chr5B 631793241 631796664 3423 True 1557.333333 2488 92.085667 688 3821 3 chr5B.!!$R1 3133
5 TraesCS3D01G402000 chr3B 680751134 680756858 5724 False 862.500000 2209 94.546167 384 4535 6 chr3B.!!$F1 4151
6 TraesCS3D01G402000 chr3B 681007784 681008327 543 True 542.000000 542 84.859000 3975 4533 1 chr3B.!!$R1 558
7 TraesCS3D01G402000 chr5A 631465739 631469452 3713 True 919.250000 1607 87.234500 722 3821 4 chr5A.!!$R1 3099
8 TraesCS3D01G402000 chr5D 502876342 502879491 3149 True 1184.000000 1509 88.603667 702 3821 3 chr5D.!!$R3 3119

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
167 168 0.037605 CTACCTGACCGGCGTTCTTT 60.038 55.0 5.91 0.0 35.61 2.52 F
258 259 0.109342 CCTCAGGCCTTTGTGTGTCT 59.891 55.0 0.00 0.0 0.00 3.41 F
1459 3694 0.249531 TCAGCGGCGTTTTACAGACA 60.250 50.0 9.37 0.0 0.00 3.41 F
2377 4906 0.183014 TTTGGGTAGAACGGGTTGCA 59.817 50.0 0.00 0.0 0.00 4.08 F
2379 4908 0.183014 TGGGTAGAACGGGTTGCAAA 59.817 50.0 0.00 0.0 0.00 3.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1459 3694 1.202842 CCCGGAAACCTAGTTTGTGGT 60.203 52.381 0.73 0.0 35.77 4.16 R
1468 3703 1.356398 AGGAAATTGCCCGGAAACCTA 59.644 47.619 0.73 0.0 0.00 3.08 R
3130 5782 0.763035 AGCTTCACGTTTACCAGGGT 59.237 50.000 0.00 0.0 0.00 4.34 R
3505 6289 0.537143 TTGTGCGCTCTGGTTTCCAT 60.537 50.000 9.73 0.0 30.82 3.41 R
3582 6421 1.160946 TGCGGCGCTTGTTTGAACTA 61.161 50.000 33.26 4.5 0.00 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.642707 ATCTTTAAACCGGACAATTGTTCA 57.357 33.333 17.08 0.00 0.00 3.18
24 25 6.452494 TCTTTAAACCGGACAATTGTTCAA 57.548 33.333 17.08 0.23 0.00 2.69
25 26 6.864342 TCTTTAAACCGGACAATTGTTCAAA 58.136 32.000 17.08 8.14 0.00 2.69
26 27 7.493367 TCTTTAAACCGGACAATTGTTCAAAT 58.507 30.769 17.08 2.66 0.00 2.32
27 28 8.630917 TCTTTAAACCGGACAATTGTTCAAATA 58.369 29.630 17.08 1.75 0.00 1.40
28 29 9.250624 CTTTAAACCGGACAATTGTTCAAATAA 57.749 29.630 17.08 7.33 0.00 1.40
30 31 7.471657 AAACCGGACAATTGTTCAAATAAAC 57.528 32.000 17.08 0.00 0.00 2.01
31 32 6.150396 ACCGGACAATTGTTCAAATAAACA 57.850 33.333 17.08 0.00 37.37 2.83
34 35 6.477033 CCGGACAATTGTTCAAATAAACACAA 59.523 34.615 17.08 0.00 38.80 3.33
35 36 7.334009 CGGACAATTGTTCAAATAAACACAAC 58.666 34.615 17.08 0.00 38.80 3.32
36 37 7.009631 CGGACAATTGTTCAAATAAACACAACA 59.990 33.333 17.08 0.00 38.80 3.33
37 38 8.113675 GGACAATTGTTCAAATAAACACAACAC 58.886 33.333 13.36 0.00 38.80 3.32
40 41 7.769272 ATTGTTCAAATAAACACAACACCAG 57.231 32.000 0.00 0.00 38.80 4.00
41 42 5.105752 TGTTCAAATAAACACAACACCAGC 58.894 37.500 0.00 0.00 34.31 4.85
42 43 5.105554 TGTTCAAATAAACACAACACCAGCT 60.106 36.000 0.00 0.00 34.31 4.24
45 46 5.126222 TCAAATAAACACAACACCAGCTTCA 59.874 36.000 0.00 0.00 0.00 3.02
47 48 3.441496 AAACACAACACCAGCTTCATG 57.559 42.857 0.00 0.00 0.00 3.07
48 49 2.057137 ACACAACACCAGCTTCATGT 57.943 45.000 0.00 0.00 0.00 3.21
49 50 2.378038 ACACAACACCAGCTTCATGTT 58.622 42.857 1.93 1.93 37.02 2.71
51 52 3.181487 ACACAACACCAGCTTCATGTTTC 60.181 43.478 4.61 0.00 34.36 2.78
52 53 3.067180 CACAACACCAGCTTCATGTTTCT 59.933 43.478 4.61 0.00 34.36 2.52
53 54 3.316308 ACAACACCAGCTTCATGTTTCTC 59.684 43.478 4.61 0.00 34.36 2.87
54 55 2.146342 ACACCAGCTTCATGTTTCTCG 58.854 47.619 0.00 0.00 0.00 4.04
55 56 1.135859 CACCAGCTTCATGTTTCTCGC 60.136 52.381 0.00 0.00 0.00 5.03
56 57 1.271054 ACCAGCTTCATGTTTCTCGCT 60.271 47.619 0.00 0.00 0.00 4.93
57 58 1.808945 CCAGCTTCATGTTTCTCGCTT 59.191 47.619 0.00 0.00 0.00 4.68
58 59 2.227388 CCAGCTTCATGTTTCTCGCTTT 59.773 45.455 0.00 0.00 0.00 3.51
60 61 3.667261 CAGCTTCATGTTTCTCGCTTTTG 59.333 43.478 0.00 0.00 0.00 2.44
61 62 2.406357 GCTTCATGTTTCTCGCTTTTGC 59.594 45.455 0.00 0.00 43.23 3.68
62 63 2.704725 TCATGTTTCTCGCTTTTGCC 57.295 45.000 0.00 0.00 43.93 4.52
63 64 1.952990 TCATGTTTCTCGCTTTTGCCA 59.047 42.857 0.00 0.00 43.93 4.92
65 66 2.490328 TGTTTCTCGCTTTTGCCAAG 57.510 45.000 0.00 0.00 43.93 3.61
66 67 1.748493 TGTTTCTCGCTTTTGCCAAGT 59.252 42.857 0.00 0.00 43.93 3.16
67 68 2.223479 TGTTTCTCGCTTTTGCCAAGTC 60.223 45.455 0.00 0.00 43.93 3.01
69 70 1.896220 TCTCGCTTTTGCCAAGTCAT 58.104 45.000 0.00 0.00 43.93 3.06
70 71 1.536766 TCTCGCTTTTGCCAAGTCATG 59.463 47.619 0.00 0.00 43.93 3.07
71 72 0.039256 TCGCTTTTGCCAAGTCATGC 60.039 50.000 0.00 0.00 43.93 4.06
72 73 0.038892 CGCTTTTGCCAAGTCATGCT 60.039 50.000 0.00 0.00 43.93 3.79
73 74 1.706443 GCTTTTGCCAAGTCATGCTC 58.294 50.000 0.00 0.00 40.15 4.26
74 75 1.670967 GCTTTTGCCAAGTCATGCTCC 60.671 52.381 0.00 0.00 40.15 4.70
75 76 1.614903 CTTTTGCCAAGTCATGCTCCA 59.385 47.619 0.00 0.00 0.00 3.86
76 77 1.927487 TTTGCCAAGTCATGCTCCAT 58.073 45.000 0.00 0.00 0.00 3.41
78 79 0.328926 TGCCAAGTCATGCTCCATGA 59.671 50.000 3.91 3.91 46.84 3.07
88 89 5.925506 TCATGCTCCATGAAAATGATTGT 57.074 34.783 5.49 0.00 46.17 2.71
90 91 7.591421 TCATGCTCCATGAAAATGATTGTAT 57.409 32.000 5.49 0.00 46.17 2.29
91 92 7.654568 TCATGCTCCATGAAAATGATTGTATC 58.345 34.615 5.49 0.00 46.17 2.24
92 93 7.285858 TCATGCTCCATGAAAATGATTGTATCA 59.714 33.333 5.49 0.00 46.17 2.15
93 94 8.088365 CATGCTCCATGAAAATGATTGTATCAT 58.912 33.333 0.00 0.00 46.24 2.45
106 107 5.526846 TGATTGTATCATCAGCGTATTGCAA 59.473 36.000 0.00 0.00 39.45 4.08
107 108 6.038050 TGATTGTATCATCAGCGTATTGCAAA 59.962 34.615 1.71 0.00 39.45 3.68
108 109 7.414984 TGATTGTATCATCAGCGTATTGCAAAA 60.415 33.333 1.71 0.00 39.45 2.44
116 117 2.940147 GCGTATTGCAAAATGGACACA 58.060 42.857 1.71 0.00 45.45 3.72
117 118 2.661195 GCGTATTGCAAAATGGACACAC 59.339 45.455 1.71 0.00 45.45 3.82
118 119 3.241701 CGTATTGCAAAATGGACACACC 58.758 45.455 1.71 0.00 39.54 4.16
119 120 2.837532 ATTGCAAAATGGACACACCC 57.162 45.000 1.71 0.00 38.00 4.61
120 121 0.755686 TTGCAAAATGGACACACCCC 59.244 50.000 0.00 0.00 38.00 4.95
121 122 1.118356 TGCAAAATGGACACACCCCC 61.118 55.000 0.00 0.00 38.00 5.40
122 123 1.118356 GCAAAATGGACACACCCCCA 61.118 55.000 0.00 0.00 38.00 4.96
123 124 1.643310 CAAAATGGACACACCCCCAT 58.357 50.000 0.00 0.00 44.52 4.00
124 125 1.550072 CAAAATGGACACACCCCCATC 59.450 52.381 0.00 0.00 41.98 3.51
127 128 0.039618 ATGGACACACCCCCATCAAC 59.960 55.000 0.00 0.00 38.75 3.18
129 130 0.988832 GGACACACCCCCATCAACTA 59.011 55.000 0.00 0.00 0.00 2.24
130 131 1.065418 GGACACACCCCCATCAACTAG 60.065 57.143 0.00 0.00 0.00 2.57
131 132 0.991920 ACACACCCCCATCAACTAGG 59.008 55.000 0.00 0.00 0.00 3.02
132 133 0.991920 CACACCCCCATCAACTAGGT 59.008 55.000 0.00 0.00 0.00 3.08
133 134 1.354368 CACACCCCCATCAACTAGGTT 59.646 52.381 0.00 0.00 0.00 3.50
135 136 0.999712 ACCCCCATCAACTAGGTTGG 59.000 55.000 9.98 0.00 42.99 3.77
138 139 0.331278 CCCATCAACTAGGTTGGGCA 59.669 55.000 4.54 0.00 42.23 5.36
139 140 1.463674 CCATCAACTAGGTTGGGCAC 58.536 55.000 9.98 0.00 42.99 5.01
153 154 2.757077 GCACCAAGCCACCTACCT 59.243 61.111 0.00 0.00 37.23 3.08
155 156 2.066340 CACCAAGCCACCTACCTGA 58.934 57.895 0.00 0.00 0.00 3.86
156 157 0.321653 CACCAAGCCACCTACCTGAC 60.322 60.000 0.00 0.00 0.00 3.51
158 159 1.079127 CAAGCCACCTACCTGACCG 60.079 63.158 0.00 0.00 0.00 4.79
159 160 2.291043 AAGCCACCTACCTGACCGG 61.291 63.158 0.00 0.00 39.35 5.28
160 161 4.468689 GCCACCTACCTGACCGGC 62.469 72.222 0.00 0.00 35.61 6.13
162 163 3.379445 CACCTACCTGACCGGCGT 61.379 66.667 6.01 0.00 35.61 5.68
164 165 2.183555 CCTACCTGACCGGCGTTC 59.816 66.667 6.01 0.30 35.61 3.95
165 166 2.348888 CCTACCTGACCGGCGTTCT 61.349 63.158 5.91 0.00 35.61 3.01
167 168 0.037605 CTACCTGACCGGCGTTCTTT 60.038 55.000 5.91 0.00 35.61 2.52
169 170 2.556287 CTGACCGGCGTTCTTTGC 59.444 61.111 5.91 0.00 0.00 3.68
177 178 1.674322 GCGTTCTTTGCCCTGCCTA 60.674 57.895 0.00 0.00 0.00 3.93
178 179 1.032114 GCGTTCTTTGCCCTGCCTAT 61.032 55.000 0.00 0.00 0.00 2.57
179 180 0.734889 CGTTCTTTGCCCTGCCTATG 59.265 55.000 0.00 0.00 0.00 2.23
180 181 1.678728 CGTTCTTTGCCCTGCCTATGA 60.679 52.381 0.00 0.00 0.00 2.15
181 182 2.019984 GTTCTTTGCCCTGCCTATGAG 58.980 52.381 0.00 0.00 0.00 2.90
182 183 1.583556 TCTTTGCCCTGCCTATGAGA 58.416 50.000 0.00 0.00 0.00 3.27
183 184 1.915489 TCTTTGCCCTGCCTATGAGAA 59.085 47.619 0.00 0.00 0.00 2.87
184 185 2.511218 TCTTTGCCCTGCCTATGAGAAT 59.489 45.455 0.00 0.00 0.00 2.40
185 186 2.353357 TTGCCCTGCCTATGAGAATG 57.647 50.000 0.00 0.00 0.00 2.67
187 188 0.892814 GCCCTGCCTATGAGAATGGC 60.893 60.000 0.00 0.00 46.26 4.40
190 191 1.133699 CCTGCCTATGAGAATGGCCAA 60.134 52.381 10.96 0.00 45.56 4.52
191 192 1.952296 CTGCCTATGAGAATGGCCAAC 59.048 52.381 10.96 7.46 45.56 3.77
192 193 1.284491 TGCCTATGAGAATGGCCAACA 59.716 47.619 10.96 8.72 45.56 3.33
193 194 2.091720 TGCCTATGAGAATGGCCAACAT 60.092 45.455 10.96 15.49 45.56 2.71
194 195 3.138098 TGCCTATGAGAATGGCCAACATA 59.862 43.478 10.96 15.78 45.56 2.29
195 196 4.202599 TGCCTATGAGAATGGCCAACATAT 60.203 41.667 10.96 8.31 45.56 1.78
196 197 4.397417 GCCTATGAGAATGGCCAACATATC 59.603 45.833 10.96 6.89 39.40 1.63
197 198 4.633126 CCTATGAGAATGGCCAACATATCG 59.367 45.833 10.96 7.10 39.40 2.92
198 199 3.836365 TGAGAATGGCCAACATATCGA 57.164 42.857 10.96 0.00 39.40 3.59
199 200 3.466836 TGAGAATGGCCAACATATCGAC 58.533 45.455 10.96 4.67 39.40 4.20
200 201 3.134623 TGAGAATGGCCAACATATCGACT 59.865 43.478 10.96 0.00 39.40 4.18
202 203 4.632153 AGAATGGCCAACATATCGACTAC 58.368 43.478 10.96 0.00 39.40 2.73
203 204 4.100963 AGAATGGCCAACATATCGACTACA 59.899 41.667 10.96 0.00 39.40 2.74
204 205 3.897141 TGGCCAACATATCGACTACAA 57.103 42.857 0.61 0.00 0.00 2.41
205 206 4.415881 TGGCCAACATATCGACTACAAT 57.584 40.909 0.61 0.00 0.00 2.71
206 207 4.126437 TGGCCAACATATCGACTACAATG 58.874 43.478 0.61 0.00 0.00 2.82
207 208 4.127171 GGCCAACATATCGACTACAATGT 58.873 43.478 0.00 0.00 34.11 2.71
214 215 7.899178 ACATATCGACTACAATGTTGAACAA 57.101 32.000 0.62 0.00 34.42 2.83
215 216 8.317891 ACATATCGACTACAATGTTGAACAAA 57.682 30.769 0.62 0.00 34.42 2.83
216 217 8.779303 ACATATCGACTACAATGTTGAACAAAA 58.221 29.630 0.62 0.00 34.42 2.44
220 221 7.802738 TCGACTACAATGTTGAACAAAATAGG 58.197 34.615 0.62 0.00 0.00 2.57
221 222 7.021196 CGACTACAATGTTGAACAAAATAGGG 58.979 38.462 0.62 0.00 0.00 3.53
222 223 7.227049 ACTACAATGTTGAACAAAATAGGGG 57.773 36.000 0.62 0.00 0.00 4.79
223 224 7.007723 ACTACAATGTTGAACAAAATAGGGGA 58.992 34.615 0.62 0.00 0.00 4.81
226 227 6.269769 ACAATGTTGAACAAAATAGGGGACAT 59.730 34.615 0.62 0.00 0.00 3.06
227 228 6.933514 ATGTTGAACAAAATAGGGGACATT 57.066 33.333 0.62 0.00 0.00 2.71
228 229 6.095432 TGTTGAACAAAATAGGGGACATTG 57.905 37.500 0.00 0.00 0.00 2.82
229 230 5.011533 TGTTGAACAAAATAGGGGACATTGG 59.988 40.000 0.00 0.00 0.00 3.16
231 232 5.588845 TGAACAAAATAGGGGACATTGGAT 58.411 37.500 0.00 0.00 0.00 3.41
234 235 5.449553 ACAAAATAGGGGACATTGGATCTC 58.550 41.667 0.00 0.00 0.00 2.75
235 236 4.731313 AAATAGGGGACATTGGATCTCC 57.269 45.455 0.00 0.00 36.92 3.71
237 238 2.293598 AGGGGACATTGGATCTCCTT 57.706 50.000 0.00 0.00 45.45 3.36
238 239 1.849039 AGGGGACATTGGATCTCCTTG 59.151 52.381 0.00 0.00 45.45 3.61
239 240 1.685148 GGGACATTGGATCTCCTTGC 58.315 55.000 0.00 0.00 36.82 4.01
244 245 2.092538 ACATTGGATCTCCTTGCCTCAG 60.093 50.000 0.00 0.00 36.82 3.35
246 247 1.630126 TGGATCTCCTTGCCTCAGGC 61.630 60.000 9.54 9.54 42.58 4.85
255 256 3.359002 GCCTCAGGCCTTTGTGTG 58.641 61.111 3.37 0.00 44.06 3.82
257 258 1.518903 GCCTCAGGCCTTTGTGTGTC 61.519 60.000 3.37 0.00 44.06 3.67
258 259 0.109342 CCTCAGGCCTTTGTGTGTCT 59.891 55.000 0.00 0.00 0.00 3.41
259 260 1.233019 CTCAGGCCTTTGTGTGTCTG 58.767 55.000 0.00 0.00 0.00 3.51
260 261 0.836606 TCAGGCCTTTGTGTGTCTGA 59.163 50.000 0.00 0.00 0.00 3.27
261 262 1.211703 TCAGGCCTTTGTGTGTCTGAA 59.788 47.619 0.00 0.00 0.00 3.02
262 263 2.023673 CAGGCCTTTGTGTGTCTGAAA 58.976 47.619 0.00 0.00 0.00 2.69
264 265 3.068590 CAGGCCTTTGTGTGTCTGAAAAT 59.931 43.478 0.00 0.00 0.00 1.82
265 266 4.278170 CAGGCCTTTGTGTGTCTGAAAATA 59.722 41.667 0.00 0.00 0.00 1.40
268 269 5.634859 GGCCTTTGTGTGTCTGAAAATAATG 59.365 40.000 0.00 0.00 0.00 1.90
269 270 6.446318 GCCTTTGTGTGTCTGAAAATAATGA 58.554 36.000 0.00 0.00 0.00 2.57
270 271 6.363357 GCCTTTGTGTGTCTGAAAATAATGAC 59.637 38.462 0.00 0.00 0.00 3.06
271 272 6.863126 CCTTTGTGTGTCTGAAAATAATGACC 59.137 38.462 0.00 0.00 0.00 4.02
274 275 8.862325 TTGTGTGTCTGAAAATAATGACCTAT 57.138 30.769 0.00 0.00 0.00 2.57
275 276 9.952030 TTGTGTGTCTGAAAATAATGACCTATA 57.048 29.630 0.00 0.00 0.00 1.31
301 302 8.408043 TCATCATTGACTTTAATTCCAACACT 57.592 30.769 0.00 0.00 0.00 3.55
302 303 9.513906 TCATCATTGACTTTAATTCCAACACTA 57.486 29.630 0.00 0.00 0.00 2.74
303 304 9.559958 CATCATTGACTTTAATTCCAACACTAC 57.440 33.333 0.00 0.00 0.00 2.73
304 305 8.106247 TCATTGACTTTAATTCCAACACTACC 57.894 34.615 0.00 0.00 0.00 3.18
305 306 7.942341 TCATTGACTTTAATTCCAACACTACCT 59.058 33.333 0.00 0.00 0.00 3.08
306 307 8.576442 CATTGACTTTAATTCCAACACTACCTT 58.424 33.333 0.00 0.00 0.00 3.50
307 308 8.528044 TTGACTTTAATTCCAACACTACCTTT 57.472 30.769 0.00 0.00 0.00 3.11
308 309 8.528044 TGACTTTAATTCCAACACTACCTTTT 57.472 30.769 0.00 0.00 0.00 2.27
309 310 8.973182 TGACTTTAATTCCAACACTACCTTTTT 58.027 29.630 0.00 0.00 0.00 1.94
311 312 7.709182 ACTTTAATTCCAACACTACCTTTTTGC 59.291 33.333 0.00 0.00 0.00 3.68
312 313 3.701532 TTCCAACACTACCTTTTTGCG 57.298 42.857 0.00 0.00 0.00 4.85
313 314 2.645802 TCCAACACTACCTTTTTGCGT 58.354 42.857 0.00 0.00 0.00 5.24
314 315 3.806380 TCCAACACTACCTTTTTGCGTA 58.194 40.909 0.00 0.00 0.00 4.42
315 316 4.197750 TCCAACACTACCTTTTTGCGTAA 58.802 39.130 0.00 0.00 0.00 3.18
316 317 4.639310 TCCAACACTACCTTTTTGCGTAAA 59.361 37.500 0.00 0.00 0.00 2.01
317 318 4.973663 CCAACACTACCTTTTTGCGTAAAG 59.026 41.667 0.00 3.96 35.39 1.85
327 328 6.496338 CTTTTTGCGTAAAGGATTCTACCT 57.504 37.500 0.00 0.00 42.69 3.08
328 329 5.873179 TTTTGCGTAAAGGATTCTACCTG 57.127 39.130 0.00 0.00 40.49 4.00
329 330 3.536956 TGCGTAAAGGATTCTACCTGG 57.463 47.619 0.00 0.00 40.49 4.45
330 331 2.210961 GCGTAAAGGATTCTACCTGGC 58.789 52.381 0.00 0.00 40.49 4.85
331 332 2.470821 CGTAAAGGATTCTACCTGGCG 58.529 52.381 0.00 0.00 40.49 5.69
334 335 0.460311 AAGGATTCTACCTGGCGTCG 59.540 55.000 0.00 0.00 40.49 5.12
335 336 1.591863 GGATTCTACCTGGCGTCGC 60.592 63.158 9.22 9.22 0.00 5.19
348 349 1.953138 CGTCGCCATGCCTCATCTC 60.953 63.158 0.00 0.00 0.00 2.75
349 350 1.144716 GTCGCCATGCCTCATCTCA 59.855 57.895 0.00 0.00 0.00 3.27
456 457 1.273211 ACAAAGCATATTGGGTGGCCT 60.273 47.619 3.32 0.00 34.56 5.19
543 544 5.067023 GCAAATAGATTAGGTTCTGCTGCTT 59.933 40.000 0.00 0.00 0.00 3.91
635 642 3.456277 AGACTCTAATAAGTGGGCAAGGG 59.544 47.826 0.00 0.00 0.00 3.95
669 676 7.572759 ACGTTGTGTTATGTTATCAGTTCTTG 58.427 34.615 0.00 0.00 0.00 3.02
699 706 2.093764 AGATTCACCACTAGCAGACTGC 60.094 50.000 20.12 20.12 45.46 4.40
747 760 3.243359 TGAGCTTGGGAAAGGTTTCAT 57.757 42.857 4.89 0.00 38.92 2.57
760 773 7.015584 GGGAAAGGTTTCATTATCCAATATGCT 59.984 37.037 4.89 0.00 38.92 3.79
969 992 7.246311 ACTATTGAGCTCATGATTTCGTTTTG 58.754 34.615 19.04 0.00 0.00 2.44
1166 3307 8.927675 TGCTTACCTTCTTTTTCTACCATTTA 57.072 30.769 0.00 0.00 0.00 1.40
1276 3508 4.521146 AGTTGATGGATTCAGCCAACTAG 58.479 43.478 18.04 0.00 42.92 2.57
1302 3534 9.241317 GCACTACAACACGTATAGTATTACAAT 57.759 33.333 0.00 0.00 0.00 2.71
1317 3550 5.835113 ATTACAATGGCATTCTAAACGCT 57.165 34.783 10.36 0.00 0.00 5.07
1328 3561 5.577164 GCATTCTAAACGCTTCTAGAAGACA 59.423 40.000 32.16 12.56 40.79 3.41
1351 3584 8.098220 ACATAAAAATGCCTCCAATTGTTTTC 57.902 30.769 4.43 0.00 0.00 2.29
1459 3694 0.249531 TCAGCGGCGTTTTACAGACA 60.250 50.000 9.37 0.00 0.00 3.41
1468 3703 3.181504 GCGTTTTACAGACACCACAAACT 60.182 43.478 0.00 0.00 0.00 2.66
1570 3807 7.333174 GGGTCTTCTTCTCTGTCTCTTTTTATG 59.667 40.741 0.00 0.00 0.00 1.90
1710 3948 6.646240 CACTGCTTATGTTTGCACCTTTTAAT 59.354 34.615 0.00 0.00 35.20 1.40
1751 3990 3.551846 CCAAGCGGTATGGGACTAAAAT 58.448 45.455 7.64 0.00 34.15 1.82
1758 3997 5.685599 GCGGTATGGGACTAAAATAACCTCA 60.686 44.000 0.00 0.00 0.00 3.86
1766 4005 4.813027 ACTAAAATAACCTCACGCGAGAA 58.187 39.130 15.93 0.00 42.34 2.87
1767 4006 4.624452 ACTAAAATAACCTCACGCGAGAAC 59.376 41.667 15.93 0.00 42.34 3.01
1850 4106 4.204012 CACTTACCACCAGACCAAGAAAA 58.796 43.478 0.00 0.00 0.00 2.29
2108 4388 5.688766 GCCTTAAGCTAGAGATGATTTGGGT 60.689 44.000 0.00 0.00 38.99 4.51
2143 4423 6.587273 AGAACACCTTCTTAGATGCTATTCC 58.413 40.000 0.00 0.00 32.29 3.01
2366 4895 6.599244 TGCAAGTATCTTTGAGATTTGGGTAG 59.401 38.462 0.00 0.00 36.20 3.18
2367 4896 6.823689 GCAAGTATCTTTGAGATTTGGGTAGA 59.176 38.462 0.00 0.00 36.20 2.59
2368 4897 7.336931 GCAAGTATCTTTGAGATTTGGGTAGAA 59.663 37.037 0.00 0.00 36.20 2.10
2369 4898 8.669243 CAAGTATCTTTGAGATTTGGGTAGAAC 58.331 37.037 0.00 0.00 36.20 3.01
2370 4899 7.042335 AGTATCTTTGAGATTTGGGTAGAACG 58.958 38.462 0.00 0.00 36.20 3.95
2371 4900 4.575885 TCTTTGAGATTTGGGTAGAACGG 58.424 43.478 0.00 0.00 0.00 4.44
2372 4901 3.343941 TTGAGATTTGGGTAGAACGGG 57.656 47.619 0.00 0.00 0.00 5.28
2373 4902 2.262637 TGAGATTTGGGTAGAACGGGT 58.737 47.619 0.00 0.00 0.00 5.28
2374 4903 2.640826 TGAGATTTGGGTAGAACGGGTT 59.359 45.455 0.00 0.00 0.00 4.11
2375 4904 3.007635 GAGATTTGGGTAGAACGGGTTG 58.992 50.000 0.00 0.00 0.00 3.77
2376 4905 1.471287 GATTTGGGTAGAACGGGTTGC 59.529 52.381 0.00 0.00 0.00 4.17
2377 4906 0.183014 TTTGGGTAGAACGGGTTGCA 59.817 50.000 0.00 0.00 0.00 4.08
2378 4907 0.183014 TTGGGTAGAACGGGTTGCAA 59.817 50.000 0.00 0.00 0.00 4.08
2379 4908 0.183014 TGGGTAGAACGGGTTGCAAA 59.817 50.000 0.00 0.00 0.00 3.68
2392 4921 3.590720 GTTGCAAACCAATGTTCTTGC 57.409 42.857 0.00 4.79 42.21 4.01
2393 4922 2.237393 TGCAAACCAATGTTCTTGCC 57.763 45.000 8.15 0.00 37.39 4.52
2394 4923 1.761784 TGCAAACCAATGTTCTTGCCT 59.238 42.857 8.15 0.00 37.39 4.75
2395 4924 2.224018 TGCAAACCAATGTTCTTGCCTC 60.224 45.455 8.15 0.00 37.39 4.70
2396 4925 2.224018 GCAAACCAATGTTCTTGCCTCA 60.224 45.455 0.00 0.00 33.86 3.86
2397 4926 3.645884 CAAACCAATGTTCTTGCCTCAG 58.354 45.455 0.00 0.00 32.15 3.35
2398 4927 2.957402 ACCAATGTTCTTGCCTCAGA 57.043 45.000 0.00 0.00 0.00 3.27
2399 4928 3.228188 ACCAATGTTCTTGCCTCAGAA 57.772 42.857 0.00 0.00 0.00 3.02
2400 4929 3.771216 ACCAATGTTCTTGCCTCAGAAT 58.229 40.909 0.00 0.00 35.23 2.40
2401 4930 4.922206 ACCAATGTTCTTGCCTCAGAATA 58.078 39.130 0.00 0.00 35.23 1.75
2402 4931 4.946157 ACCAATGTTCTTGCCTCAGAATAG 59.054 41.667 0.00 0.00 35.23 1.73
2403 4932 4.337555 CCAATGTTCTTGCCTCAGAATAGG 59.662 45.833 0.00 0.00 35.23 2.57
2717 5254 8.986477 ATGGTTGCTATTCTTTTTATTGTGAC 57.014 30.769 0.00 0.00 0.00 3.67
2789 5331 2.238646 AGATACCACAAATTCGCTCCCA 59.761 45.455 0.00 0.00 0.00 4.37
2935 5481 8.298854 TGTGAAACCATAACATCATTTTCTCAG 58.701 33.333 0.00 0.00 34.36 3.35
2991 5643 3.013327 TGGCAGCTCCAGAGGCAT 61.013 61.111 1.25 0.00 40.72 4.40
2993 5645 1.379576 GGCAGCTCCAGAGGCATTT 60.380 57.895 0.00 0.00 34.01 2.32
3130 5782 3.304911 TGATGTTGGACAAAACCCAGA 57.695 42.857 0.00 0.00 34.77 3.86
3156 5808 3.251571 GGTAAACGTGAAGCTCGAGAAT 58.748 45.455 18.75 2.82 0.00 2.40
3285 5958 3.207474 CAGGTATTGCAGCTTCAACAC 57.793 47.619 0.00 0.00 30.72 3.32
3302 5975 2.203394 CCACCACCAGCAACAGCT 60.203 61.111 0.00 0.00 39.75 4.24
3343 6055 0.595825 GCAACAACAACTCCAGCAGC 60.596 55.000 0.00 0.00 0.00 5.25
3344 6056 0.740149 CAACAACAACTCCAGCAGCA 59.260 50.000 0.00 0.00 0.00 4.41
3345 6057 0.740737 AACAACAACTCCAGCAGCAC 59.259 50.000 0.00 0.00 0.00 4.40
3346 6058 1.103398 ACAACAACTCCAGCAGCACC 61.103 55.000 0.00 0.00 0.00 5.01
3347 6059 1.102809 CAACAACTCCAGCAGCACCA 61.103 55.000 0.00 0.00 0.00 4.17
3348 6060 1.103398 AACAACTCCAGCAGCACCAC 61.103 55.000 0.00 0.00 0.00 4.16
3349 6061 2.113986 AACTCCAGCAGCACCACC 59.886 61.111 0.00 0.00 0.00 4.61
3350 6062 2.756042 AACTCCAGCAGCACCACCA 61.756 57.895 0.00 0.00 0.00 4.17
3351 6063 2.670934 CTCCAGCAGCACCACCAC 60.671 66.667 0.00 0.00 0.00 4.16
3352 6064 4.269523 TCCAGCAGCACCACCACC 62.270 66.667 0.00 0.00 0.00 4.61
3353 6065 4.584518 CCAGCAGCACCACCACCA 62.585 66.667 0.00 0.00 0.00 4.17
3354 6066 3.289834 CAGCAGCACCACCACCAC 61.290 66.667 0.00 0.00 0.00 4.16
3355 6067 4.586235 AGCAGCACCACCACCACC 62.586 66.667 0.00 0.00 0.00 4.61
3356 6068 4.892965 GCAGCACCACCACCACCA 62.893 66.667 0.00 0.00 0.00 4.17
3357 6069 2.123939 CAGCACCACCACCACCAA 60.124 61.111 0.00 0.00 0.00 3.67
3390 6102 2.123939 CAGCACCACCACCACCAA 60.124 61.111 0.00 0.00 0.00 3.67
3530 6366 2.749044 CAGAGCGCACAAGCCCAT 60.749 61.111 11.47 0.00 37.52 4.00
3536 6372 1.450134 CGCACAAGCCCATCTAGCA 60.450 57.895 0.00 0.00 37.52 3.49
3575 6414 2.044946 GGAAACCAGAGCGCCCAT 60.045 61.111 2.29 0.00 0.00 4.00
3842 6691 2.352421 GGTCGCTGTACTTGCAAGTCTA 60.352 50.000 34.29 22.37 40.37 2.59
3856 6705 4.956075 TGCAAGTCTACCATCTCATCTGTA 59.044 41.667 0.00 0.00 0.00 2.74
3857 6706 5.163509 TGCAAGTCTACCATCTCATCTGTAC 60.164 44.000 0.00 0.00 0.00 2.90
3859 6708 6.406400 GCAAGTCTACCATCTCATCTGTACTT 60.406 42.308 0.00 0.00 0.00 2.24
3889 6851 0.606401 GGTCACAAGGCAGCAGCTTA 60.606 55.000 0.00 0.00 41.70 3.09
3955 6917 6.724893 ACAACAAAATAAGCTACCAAAGGT 57.275 33.333 0.00 0.00 40.16 3.50
3982 6944 8.073768 ACAAAATAAACTTCCACGTGATTACAG 58.926 33.333 19.30 7.44 0.00 2.74
4112 7077 8.082334 TGTGCAGAAAATATTTTAAAACAGGC 57.918 30.769 13.34 9.32 0.00 4.85
4230 7203 1.809547 CTGAGCTTCTGACTGTCGAGA 59.190 52.381 2.98 4.80 0.00 4.04
4300 7275 5.304357 GGCTGGCTGGTTGGTTATTTATTAT 59.696 40.000 0.00 0.00 0.00 1.28
4472 7448 5.826643 TCAGAATATACCAGCCCTTTGTTT 58.173 37.500 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.452494 TTGAACAATTGTCCGGTTTAAAGA 57.548 33.333 12.39 0.00 0.00 2.52
2 3 7.707774 ATTTGAACAATTGTCCGGTTTAAAG 57.292 32.000 12.39 0.00 34.79 1.85
4 5 9.032420 GTTTATTTGAACAATTGTCCGGTTTAA 57.968 29.630 12.39 4.03 0.00 1.52
7 8 6.477360 GTGTTTATTTGAACAATTGTCCGGTT 59.523 34.615 12.39 0.00 40.86 4.44
10 11 7.009631 TGTTGTGTTTATTTGAACAATTGTCCG 59.990 33.333 12.39 0.00 40.86 4.79
11 12 8.113675 GTGTTGTGTTTATTTGAACAATTGTCC 58.886 33.333 12.39 0.00 40.86 4.02
12 13 8.113675 GGTGTTGTGTTTATTTGAACAATTGTC 58.886 33.333 12.39 6.33 40.86 3.18
13 14 7.604164 TGGTGTTGTGTTTATTTGAACAATTGT 59.396 29.630 4.92 4.92 40.86 2.71
14 15 7.968246 TGGTGTTGTGTTTATTTGAACAATTG 58.032 30.769 3.24 3.24 40.86 2.32
15 16 7.201600 GCTGGTGTTGTGTTTATTTGAACAATT 60.202 33.333 0.00 0.00 40.86 2.32
16 17 6.257630 GCTGGTGTTGTGTTTATTTGAACAAT 59.742 34.615 0.00 0.00 40.86 2.71
17 18 5.578727 GCTGGTGTTGTGTTTATTTGAACAA 59.421 36.000 0.00 0.00 40.86 2.83
18 19 5.105554 AGCTGGTGTTGTGTTTATTTGAACA 60.106 36.000 0.00 0.00 37.20 3.18
19 20 5.348164 AGCTGGTGTTGTGTTTATTTGAAC 58.652 37.500 0.00 0.00 0.00 3.18
20 21 5.590530 AGCTGGTGTTGTGTTTATTTGAA 57.409 34.783 0.00 0.00 0.00 2.69
21 22 5.126222 TGAAGCTGGTGTTGTGTTTATTTGA 59.874 36.000 0.00 0.00 0.00 2.69
22 23 5.347342 TGAAGCTGGTGTTGTGTTTATTTG 58.653 37.500 0.00 0.00 0.00 2.32
23 24 5.590530 TGAAGCTGGTGTTGTGTTTATTT 57.409 34.783 0.00 0.00 0.00 1.40
24 25 5.068987 ACATGAAGCTGGTGTTGTGTTTATT 59.931 36.000 0.00 0.00 0.00 1.40
25 26 4.584325 ACATGAAGCTGGTGTTGTGTTTAT 59.416 37.500 0.00 0.00 0.00 1.40
26 27 3.951037 ACATGAAGCTGGTGTTGTGTTTA 59.049 39.130 0.00 0.00 0.00 2.01
27 28 2.760092 ACATGAAGCTGGTGTTGTGTTT 59.240 40.909 0.00 0.00 0.00 2.83
28 29 2.378038 ACATGAAGCTGGTGTTGTGTT 58.622 42.857 0.00 0.00 0.00 3.32
30 31 3.067180 AGAAACATGAAGCTGGTGTTGTG 59.933 43.478 0.00 0.00 36.31 3.33
31 32 3.290710 AGAAACATGAAGCTGGTGTTGT 58.709 40.909 0.00 0.00 36.31 3.32
34 35 2.146342 CGAGAAACATGAAGCTGGTGT 58.854 47.619 0.00 0.00 0.00 4.16
35 36 1.135859 GCGAGAAACATGAAGCTGGTG 60.136 52.381 0.00 0.00 0.00 4.17
36 37 1.160137 GCGAGAAACATGAAGCTGGT 58.840 50.000 0.00 0.00 0.00 4.00
37 38 1.446907 AGCGAGAAACATGAAGCTGG 58.553 50.000 0.00 0.00 33.31 4.85
40 41 2.406357 GCAAAAGCGAGAAACATGAAGC 59.594 45.455 0.00 0.00 0.00 3.86
41 42 2.982470 GGCAAAAGCGAGAAACATGAAG 59.018 45.455 0.00 0.00 0.00 3.02
42 43 2.360483 TGGCAAAAGCGAGAAACATGAA 59.640 40.909 0.00 0.00 0.00 2.57
45 46 2.362077 ACTTGGCAAAAGCGAGAAACAT 59.638 40.909 0.00 0.00 0.00 2.71
47 48 2.223479 TGACTTGGCAAAAGCGAGAAAC 60.223 45.455 0.00 0.00 0.00 2.78
48 49 2.020720 TGACTTGGCAAAAGCGAGAAA 58.979 42.857 0.00 0.00 0.00 2.52
49 50 1.674359 TGACTTGGCAAAAGCGAGAA 58.326 45.000 0.00 0.00 0.00 2.87
51 52 1.973138 CATGACTTGGCAAAAGCGAG 58.027 50.000 0.00 0.00 0.00 5.03
52 53 0.039256 GCATGACTTGGCAAAAGCGA 60.039 50.000 0.00 0.00 0.00 4.93
53 54 0.038892 AGCATGACTTGGCAAAAGCG 60.039 50.000 0.00 0.00 0.00 4.68
54 55 1.670967 GGAGCATGACTTGGCAAAAGC 60.671 52.381 0.00 1.28 0.00 3.51
55 56 1.614903 TGGAGCATGACTTGGCAAAAG 59.385 47.619 0.00 0.00 0.00 2.27
56 57 1.702182 TGGAGCATGACTTGGCAAAA 58.298 45.000 0.00 0.00 0.00 2.44
57 58 1.546923 CATGGAGCATGACTTGGCAAA 59.453 47.619 0.00 0.00 43.81 3.68
58 59 1.179152 CATGGAGCATGACTTGGCAA 58.821 50.000 0.00 0.00 43.81 4.52
60 61 3.179925 TCATGGAGCATGACTTGGC 57.820 52.632 0.00 0.00 44.60 4.52
66 67 7.285858 TGATACAATCATTTTCATGGAGCATGA 59.714 33.333 0.00 0.00 40.46 3.07
67 68 7.430441 TGATACAATCATTTTCATGGAGCATG 58.570 34.615 0.00 0.00 37.50 4.06
78 79 7.592533 GCAATACGCTGATGATACAATCATTTT 59.407 33.333 4.02 0.00 43.21 1.82
79 80 7.080099 GCAATACGCTGATGATACAATCATTT 58.920 34.615 4.02 0.00 43.21 2.32
82 83 5.055812 TGCAATACGCTGATGATACAATCA 58.944 37.500 0.00 0.00 42.25 2.57
83 84 5.596268 TGCAATACGCTGATGATACAATC 57.404 39.130 0.00 0.00 43.06 2.67
84 85 6.375945 TTTGCAATACGCTGATGATACAAT 57.624 33.333 0.00 0.00 43.06 2.71
85 86 5.809719 TTTGCAATACGCTGATGATACAA 57.190 34.783 0.00 0.00 43.06 2.41
88 89 5.530543 TCCATTTTGCAATACGCTGATGATA 59.469 36.000 0.00 0.00 43.06 2.15
90 91 3.693578 TCCATTTTGCAATACGCTGATGA 59.306 39.130 0.00 0.00 43.06 2.92
91 92 3.792956 GTCCATTTTGCAATACGCTGATG 59.207 43.478 0.00 0.00 43.06 3.07
92 93 3.443329 TGTCCATTTTGCAATACGCTGAT 59.557 39.130 0.00 0.00 43.06 2.90
93 94 2.816672 TGTCCATTTTGCAATACGCTGA 59.183 40.909 0.00 0.00 43.06 4.26
94 95 2.916716 GTGTCCATTTTGCAATACGCTG 59.083 45.455 0.00 0.00 43.06 5.18
95 96 2.556189 TGTGTCCATTTTGCAATACGCT 59.444 40.909 0.00 0.00 43.06 5.07
96 97 2.661195 GTGTGTCCATTTTGCAATACGC 59.339 45.455 0.00 1.81 42.89 4.42
97 98 3.241701 GGTGTGTCCATTTTGCAATACG 58.758 45.455 0.00 0.00 35.97 3.06
98 99 3.584834 GGGTGTGTCCATTTTGCAATAC 58.415 45.455 0.00 0.00 38.11 1.89
99 100 2.564947 GGGGTGTGTCCATTTTGCAATA 59.435 45.455 0.00 0.00 38.11 1.90
102 103 1.118356 GGGGGTGTGTCCATTTTGCA 61.118 55.000 0.00 0.00 38.11 4.08
103 104 1.118356 TGGGGGTGTGTCCATTTTGC 61.118 55.000 0.00 0.00 38.11 3.68
106 107 0.783206 TGATGGGGGTGTGTCCATTT 59.217 50.000 0.00 0.00 43.20 2.32
107 108 0.783206 TTGATGGGGGTGTGTCCATT 59.217 50.000 0.00 0.00 43.20 3.16
108 109 0.039618 GTTGATGGGGGTGTGTCCAT 59.960 55.000 0.00 0.00 45.57 3.41
109 110 1.065410 AGTTGATGGGGGTGTGTCCA 61.065 55.000 0.00 0.00 38.11 4.02
111 112 1.065418 CCTAGTTGATGGGGGTGTGTC 60.065 57.143 0.00 0.00 0.00 3.67
112 113 0.991920 CCTAGTTGATGGGGGTGTGT 59.008 55.000 0.00 0.00 0.00 3.72
113 114 0.991920 ACCTAGTTGATGGGGGTGTG 59.008 55.000 0.00 0.00 32.60 3.82
114 115 1.354368 CAACCTAGTTGATGGGGGTGT 59.646 52.381 1.14 0.00 45.28 4.16
115 116 1.340991 CCAACCTAGTTGATGGGGGTG 60.341 57.143 9.00 0.00 45.28 4.61
116 117 0.999712 CCAACCTAGTTGATGGGGGT 59.000 55.000 9.00 0.00 45.28 4.95
117 118 3.903208 CCAACCTAGTTGATGGGGG 57.097 57.895 9.00 0.00 45.28 5.40
120 121 1.463674 GTGCCCAACCTAGTTGATGG 58.536 55.000 9.00 4.07 45.28 3.51
121 122 1.463674 GGTGCCCAACCTAGTTGATG 58.536 55.000 9.00 1.57 45.28 3.07
122 123 3.978876 GGTGCCCAACCTAGTTGAT 57.021 52.632 9.00 0.00 45.28 2.57
136 137 1.675641 CAGGTAGGTGGCTTGGTGC 60.676 63.158 0.00 0.00 41.94 5.01
138 139 1.489560 GGTCAGGTAGGTGGCTTGGT 61.490 60.000 0.00 0.00 0.00 3.67
139 140 1.299976 GGTCAGGTAGGTGGCTTGG 59.700 63.158 0.00 0.00 0.00 3.61
141 142 2.291043 CCGGTCAGGTAGGTGGCTT 61.291 63.158 0.00 0.00 34.51 4.35
142 143 2.683933 CCGGTCAGGTAGGTGGCT 60.684 66.667 0.00 0.00 34.51 4.75
143 144 4.468689 GCCGGTCAGGTAGGTGGC 62.469 72.222 1.90 0.00 43.70 5.01
144 145 4.143333 CGCCGGTCAGGTAGGTGG 62.143 72.222 1.90 0.00 43.70 4.61
146 147 2.602568 AACGCCGGTCAGGTAGGT 60.603 61.111 1.90 0.00 43.70 3.08
147 148 1.885163 AAGAACGCCGGTCAGGTAGG 61.885 60.000 4.38 0.00 43.70 3.18
148 149 0.037605 AAAGAACGCCGGTCAGGTAG 60.038 55.000 4.38 0.00 43.70 3.18
150 151 1.597027 CAAAGAACGCCGGTCAGGT 60.597 57.895 4.38 0.00 43.70 4.00
151 152 2.966309 GCAAAGAACGCCGGTCAGG 61.966 63.158 4.38 0.00 44.97 3.86
152 153 2.556287 GCAAAGAACGCCGGTCAG 59.444 61.111 4.38 0.00 0.00 3.51
153 154 2.975799 GGCAAAGAACGCCGGTCA 60.976 61.111 4.38 0.00 40.35 4.02
159 160 1.032114 ATAGGCAGGGCAAAGAACGC 61.032 55.000 0.00 0.00 0.00 4.84
160 161 0.734889 CATAGGCAGGGCAAAGAACG 59.265 55.000 0.00 0.00 0.00 3.95
162 163 1.915489 TCTCATAGGCAGGGCAAAGAA 59.085 47.619 0.00 0.00 0.00 2.52
164 165 2.425143 TTCTCATAGGCAGGGCAAAG 57.575 50.000 0.00 0.00 0.00 2.77
165 166 2.658285 CATTCTCATAGGCAGGGCAAA 58.342 47.619 0.00 0.00 0.00 3.68
167 168 0.475475 CCATTCTCATAGGCAGGGCA 59.525 55.000 0.00 0.00 0.00 5.36
174 175 4.633126 CGATATGTTGGCCATTCTCATAGG 59.367 45.833 6.09 6.71 34.86 2.57
175 176 5.349817 GTCGATATGTTGGCCATTCTCATAG 59.650 44.000 6.09 3.95 34.86 2.23
177 178 4.067896 GTCGATATGTTGGCCATTCTCAT 58.932 43.478 6.09 11.92 34.86 2.90
178 179 3.134623 AGTCGATATGTTGGCCATTCTCA 59.865 43.478 6.09 4.46 34.86 3.27
179 180 3.733337 AGTCGATATGTTGGCCATTCTC 58.267 45.455 6.09 0.00 34.86 2.87
180 181 3.845781 AGTCGATATGTTGGCCATTCT 57.154 42.857 6.09 0.00 34.86 2.40
181 182 4.377021 TGTAGTCGATATGTTGGCCATTC 58.623 43.478 6.09 3.51 34.86 2.67
182 183 4.415881 TGTAGTCGATATGTTGGCCATT 57.584 40.909 6.09 0.00 34.86 3.16
183 184 4.415881 TTGTAGTCGATATGTTGGCCAT 57.584 40.909 6.09 0.00 37.58 4.40
184 185 3.897141 TTGTAGTCGATATGTTGGCCA 57.103 42.857 0.00 0.00 0.00 5.36
185 186 4.127171 ACATTGTAGTCGATATGTTGGCC 58.873 43.478 0.00 0.00 0.00 5.36
190 191 7.899178 TTGTTCAACATTGTAGTCGATATGT 57.101 32.000 0.00 0.00 32.89 2.29
191 192 9.773328 ATTTTGTTCAACATTGTAGTCGATATG 57.227 29.630 0.00 0.00 0.00 1.78
194 195 8.450964 CCTATTTTGTTCAACATTGTAGTCGAT 58.549 33.333 0.00 0.00 0.00 3.59
195 196 7.094975 CCCTATTTTGTTCAACATTGTAGTCGA 60.095 37.037 0.00 0.00 0.00 4.20
196 197 7.021196 CCCTATTTTGTTCAACATTGTAGTCG 58.979 38.462 0.00 0.00 0.00 4.18
197 198 7.175990 TCCCCTATTTTGTTCAACATTGTAGTC 59.824 37.037 0.00 0.00 0.00 2.59
198 199 7.007723 TCCCCTATTTTGTTCAACATTGTAGT 58.992 34.615 0.00 0.00 0.00 2.73
199 200 7.040062 TGTCCCCTATTTTGTTCAACATTGTAG 60.040 37.037 0.00 0.00 0.00 2.74
200 201 6.778069 TGTCCCCTATTTTGTTCAACATTGTA 59.222 34.615 0.00 0.00 0.00 2.41
202 203 6.095432 TGTCCCCTATTTTGTTCAACATTG 57.905 37.500 0.00 0.00 0.00 2.82
203 204 6.933514 ATGTCCCCTATTTTGTTCAACATT 57.066 33.333 0.00 0.00 0.00 2.71
204 205 6.295802 CCAATGTCCCCTATTTTGTTCAACAT 60.296 38.462 0.00 0.00 0.00 2.71
205 206 5.011533 CCAATGTCCCCTATTTTGTTCAACA 59.988 40.000 0.00 0.00 0.00 3.33
206 207 5.245075 TCCAATGTCCCCTATTTTGTTCAAC 59.755 40.000 0.00 0.00 0.00 3.18
207 208 5.398236 TCCAATGTCCCCTATTTTGTTCAA 58.602 37.500 0.00 0.00 0.00 2.69
210 211 5.842339 AGATCCAATGTCCCCTATTTTGTT 58.158 37.500 0.00 0.00 0.00 2.83
212 213 4.829492 GGAGATCCAATGTCCCCTATTTTG 59.171 45.833 0.00 0.00 36.76 2.44
214 215 4.319515 AGGAGATCCAATGTCCCCTATTT 58.680 43.478 0.92 0.00 43.41 1.40
215 216 3.959920 AGGAGATCCAATGTCCCCTATT 58.040 45.455 0.92 0.00 43.41 1.73
216 217 3.654806 CAAGGAGATCCAATGTCCCCTAT 59.345 47.826 0.92 0.00 43.41 2.57
218 219 1.849039 CAAGGAGATCCAATGTCCCCT 59.151 52.381 0.92 0.00 43.41 4.79
219 220 1.752084 GCAAGGAGATCCAATGTCCCC 60.752 57.143 0.92 0.00 43.41 4.81
220 221 1.685148 GCAAGGAGATCCAATGTCCC 58.315 55.000 0.92 0.00 43.41 4.46
221 222 1.213926 AGGCAAGGAGATCCAATGTCC 59.786 52.381 0.92 6.01 42.75 4.02
222 223 2.092753 TGAGGCAAGGAGATCCAATGTC 60.093 50.000 0.92 1.61 38.89 3.06
223 224 1.918262 TGAGGCAAGGAGATCCAATGT 59.082 47.619 0.92 0.00 38.89 2.71
226 227 0.914644 CCTGAGGCAAGGAGATCCAA 59.085 55.000 0.92 0.00 40.02 3.53
227 228 2.612760 CCTGAGGCAAGGAGATCCA 58.387 57.895 0.92 0.00 40.02 3.41
239 240 0.109342 AGACACACAAAGGCCTGAGG 59.891 55.000 5.69 0.53 0.00 3.86
244 245 3.733443 ATTTTCAGACACACAAAGGCC 57.267 42.857 0.00 0.00 0.00 5.19
246 247 6.863126 GGTCATTATTTTCAGACACACAAAGG 59.137 38.462 0.00 0.00 32.79 3.11
247 248 7.651808 AGGTCATTATTTTCAGACACACAAAG 58.348 34.615 0.00 0.00 32.79 2.77
275 276 9.028284 AGTGTTGGAATTAAAGTCAATGATGAT 57.972 29.630 0.00 0.00 38.01 2.45
276 277 8.408043 AGTGTTGGAATTAAAGTCAATGATGA 57.592 30.769 0.00 0.00 0.00 2.92
277 278 9.559958 GTAGTGTTGGAATTAAAGTCAATGATG 57.440 33.333 0.00 0.00 0.00 3.07
278 279 8.739972 GGTAGTGTTGGAATTAAAGTCAATGAT 58.260 33.333 0.00 0.00 0.00 2.45
279 280 7.942341 AGGTAGTGTTGGAATTAAAGTCAATGA 59.058 33.333 0.00 0.00 0.00 2.57
280 281 8.110860 AGGTAGTGTTGGAATTAAAGTCAATG 57.889 34.615 0.00 0.00 0.00 2.82
282 283 8.528044 AAAGGTAGTGTTGGAATTAAAGTCAA 57.472 30.769 0.00 0.00 0.00 3.18
283 284 8.528044 AAAAGGTAGTGTTGGAATTAAAGTCA 57.472 30.769 0.00 0.00 0.00 3.41
284 285 9.244799 CAAAAAGGTAGTGTTGGAATTAAAGTC 57.755 33.333 0.00 0.00 0.00 3.01
285 286 7.709182 GCAAAAAGGTAGTGTTGGAATTAAAGT 59.291 33.333 0.00 0.00 0.00 2.66
286 287 7.096230 CGCAAAAAGGTAGTGTTGGAATTAAAG 60.096 37.037 0.00 0.00 0.00 1.85
287 288 6.697892 CGCAAAAAGGTAGTGTTGGAATTAAA 59.302 34.615 0.00 0.00 0.00 1.52
288 289 6.183360 ACGCAAAAAGGTAGTGTTGGAATTAA 60.183 34.615 0.00 0.00 0.00 1.40
290 291 4.098807 ACGCAAAAAGGTAGTGTTGGAATT 59.901 37.500 0.00 0.00 0.00 2.17
291 292 3.634910 ACGCAAAAAGGTAGTGTTGGAAT 59.365 39.130 0.00 0.00 0.00 3.01
292 293 3.018149 ACGCAAAAAGGTAGTGTTGGAA 58.982 40.909 0.00 0.00 0.00 3.53
293 294 2.645802 ACGCAAAAAGGTAGTGTTGGA 58.354 42.857 0.00 0.00 0.00 3.53
294 295 4.555348 TTACGCAAAAAGGTAGTGTTGG 57.445 40.909 0.00 0.00 0.00 3.77
304 305 6.314784 CAGGTAGAATCCTTTACGCAAAAAG 58.685 40.000 1.63 1.63 35.37 2.27
305 306 5.182380 CCAGGTAGAATCCTTTACGCAAAAA 59.818 40.000 0.00 0.00 35.37 1.94
306 307 4.698304 CCAGGTAGAATCCTTTACGCAAAA 59.302 41.667 0.00 0.00 35.37 2.44
307 308 4.258543 CCAGGTAGAATCCTTTACGCAAA 58.741 43.478 0.00 0.00 35.37 3.68
308 309 3.869065 CCAGGTAGAATCCTTTACGCAA 58.131 45.455 0.00 0.00 35.37 4.85
309 310 2.419574 GCCAGGTAGAATCCTTTACGCA 60.420 50.000 0.00 0.00 35.37 5.24
311 312 2.159142 ACGCCAGGTAGAATCCTTTACG 60.159 50.000 0.00 0.00 35.37 3.18
312 313 3.455327 GACGCCAGGTAGAATCCTTTAC 58.545 50.000 0.00 0.00 35.37 2.01
313 314 2.100252 CGACGCCAGGTAGAATCCTTTA 59.900 50.000 0.00 0.00 35.37 1.85
314 315 1.134788 CGACGCCAGGTAGAATCCTTT 60.135 52.381 0.00 0.00 35.37 3.11
315 316 0.460311 CGACGCCAGGTAGAATCCTT 59.540 55.000 0.00 0.00 35.37 3.36
316 317 2.017559 GCGACGCCAGGTAGAATCCT 62.018 60.000 9.14 0.00 38.51 3.24
317 318 1.591863 GCGACGCCAGGTAGAATCC 60.592 63.158 9.14 0.00 0.00 3.01
318 319 4.014065 GCGACGCCAGGTAGAATC 57.986 61.111 9.14 0.00 0.00 2.52
329 330 3.643978 GATGAGGCATGGCGACGC 61.644 66.667 12.43 12.43 0.00 5.19
330 331 1.953138 GAGATGAGGCATGGCGACG 60.953 63.158 14.30 0.00 0.00 5.12
331 332 0.250209 ATGAGATGAGGCATGGCGAC 60.250 55.000 14.30 12.53 0.00 5.19
334 335 2.149578 GTACATGAGATGAGGCATGGC 58.850 52.381 12.14 12.14 44.64 4.40
335 336 3.766068 AGTACATGAGATGAGGCATGG 57.234 47.619 0.00 0.00 44.64 3.66
337 338 3.972638 AGGAAGTACATGAGATGAGGCAT 59.027 43.478 0.00 0.00 0.00 4.40
338 339 3.133542 CAGGAAGTACATGAGATGAGGCA 59.866 47.826 0.00 0.00 31.40 4.75
340 341 5.350504 AACAGGAAGTACATGAGATGAGG 57.649 43.478 0.00 0.00 34.19 3.86
341 342 7.704472 GTCTTAACAGGAAGTACATGAGATGAG 59.296 40.741 0.00 0.00 34.19 2.90
342 343 7.178451 TGTCTTAACAGGAAGTACATGAGATGA 59.822 37.037 0.00 0.00 34.19 2.92
345 346 6.911250 TGTCTTAACAGGAAGTACATGAGA 57.089 37.500 0.00 0.00 34.19 3.27
348 349 8.948631 ATACATGTCTTAACAGGAAGTACATG 57.051 34.615 0.00 17.51 42.68 3.21
438 439 2.513738 TCTAGGCCACCCAATATGCTTT 59.486 45.455 5.01 0.00 0.00 3.51
486 487 8.581253 AAAGTTCCTATCGAAGATCCAATTTT 57.419 30.769 0.00 0.00 45.12 1.82
543 544 8.347035 GTCCTAAAACATAGTTGCACTACAAAA 58.653 33.333 0.00 0.00 40.82 2.44
635 642 2.433868 TAACACAACGTCTCCAGAGC 57.566 50.000 0.00 0.00 0.00 4.09
669 676 4.393371 GCTAGTGGTGAATCTGACTTTTCC 59.607 45.833 0.00 0.00 0.00 3.13
747 760 6.571624 ACCTAGGACCTAGCATATTGGATAA 58.428 40.000 21.54 0.00 33.12 1.75
760 773 9.995594 TCTTGTTAAATACTTACCTAGGACCTA 57.004 33.333 17.98 0.13 0.00 3.08
837 855 4.657075 AAGCCGTACTGTACATTTTTCG 57.343 40.909 17.35 2.24 0.00 3.46
845 863 6.401796 CCTTGATTTGTTAAGCCGTACTGTAC 60.402 42.308 7.90 7.90 0.00 2.90
947 968 6.017400 ACAAAACGAAATCATGAGCTCAAT 57.983 33.333 22.50 7.91 0.00 2.57
1004 1027 5.841783 ACTCTACTCCCCATCTTTCTAATCC 59.158 44.000 0.00 0.00 0.00 3.01
1010 1033 2.158885 GCCACTCTACTCCCCATCTTTC 60.159 54.545 0.00 0.00 0.00 2.62
1039 1062 4.392047 ACTTGTGCATCTTGATGAACTGA 58.608 39.130 19.11 9.56 31.30 3.41
1166 3307 8.395633 GGAAAAATTTATGACAGTAGCGTACAT 58.604 33.333 0.00 0.00 0.00 2.29
1232 3376 6.061441 ACTTTGGACAATTGTGAGTACATGA 58.939 36.000 17.58 0.00 36.53 3.07
1240 3384 4.892345 TCCATCAACTTTGGACAATTGTGA 59.108 37.500 17.58 4.65 38.35 3.58
1276 3508 8.619146 TTGTAATACTATACGTGTTGTAGTGC 57.381 34.615 14.69 13.79 36.25 4.40
1302 3534 4.465632 TCTAGAAGCGTTTAGAATGCCA 57.534 40.909 0.00 0.00 44.49 4.92
1317 3550 7.402054 TGGAGGCATTTTTATGTCTTCTAGAA 58.598 34.615 4.81 4.81 36.50 2.10
1328 3561 7.938490 ACAGAAAACAATTGGAGGCATTTTTAT 59.062 29.630 10.83 0.40 0.00 1.40
1459 3694 1.202842 CCCGGAAACCTAGTTTGTGGT 60.203 52.381 0.73 0.00 35.77 4.16
1468 3703 1.356398 AGGAAATTGCCCGGAAACCTA 59.644 47.619 0.73 0.00 0.00 3.08
1710 3948 2.028385 GGCGAGAAAGAGTTGGAGGTAA 60.028 50.000 0.00 0.00 0.00 2.85
1751 3990 2.512485 TTTGTTCTCGCGTGAGGTTA 57.488 45.000 24.88 9.20 42.79 2.85
1850 4106 7.716799 TGGATTTCTTGCCAATAACATTACT 57.283 32.000 0.00 0.00 0.00 2.24
1878 4134 6.600427 CCCGTTTATGTATCAGTAAAAAGGGT 59.400 38.462 8.41 0.00 36.40 4.34
2108 4388 5.825593 AGAAGGTGTTCTATCAGGTTCAA 57.174 39.130 0.00 0.00 41.54 2.69
2143 4423 3.437741 AGGGCGTTTTTATAAACACCTCG 59.562 43.478 13.35 5.88 42.75 4.63
2190 4470 5.424757 AGAGCTTGTTTACACTACAACACA 58.575 37.500 0.00 0.00 32.57 3.72
2372 4901 2.287644 GGCAAGAACATTGGTTTGCAAC 59.712 45.455 17.39 0.00 40.75 4.17
2373 4902 2.170187 AGGCAAGAACATTGGTTTGCAA 59.830 40.909 17.39 0.00 40.75 4.08
2374 4903 1.761784 AGGCAAGAACATTGGTTTGCA 59.238 42.857 17.39 0.00 40.75 4.08
2375 4904 2.224018 TGAGGCAAGAACATTGGTTTGC 60.224 45.455 11.00 11.00 39.11 3.68
2376 4905 3.318839 TCTGAGGCAAGAACATTGGTTTG 59.681 43.478 0.00 0.00 37.36 2.93
2377 4906 3.565307 TCTGAGGCAAGAACATTGGTTT 58.435 40.909 0.00 0.00 37.36 3.27
2378 4907 3.228188 TCTGAGGCAAGAACATTGGTT 57.772 42.857 0.00 0.00 40.76 3.67
2379 4908 2.957402 TCTGAGGCAAGAACATTGGT 57.043 45.000 0.00 0.00 0.00 3.67
2380 4909 4.337555 CCTATTCTGAGGCAAGAACATTGG 59.662 45.833 4.96 2.76 38.95 3.16
2381 4910 5.496133 CCTATTCTGAGGCAAGAACATTG 57.504 43.478 4.96 0.00 38.95 2.82
2392 4921 4.843516 AGAATAAGGAGGCCTATTCTGAGG 59.156 45.833 22.36 0.00 35.15 3.86
2393 4922 6.269769 AGAAGAATAAGGAGGCCTATTCTGAG 59.730 42.308 23.29 0.00 35.85 3.35
2394 4923 6.146760 AGAAGAATAAGGAGGCCTATTCTGA 58.853 40.000 23.29 9.00 35.85 3.27
2395 4924 6.432403 AGAAGAATAAGGAGGCCTATTCTG 57.568 41.667 23.29 0.00 35.85 3.02
2396 4925 8.749696 ATTAGAAGAATAAGGAGGCCTATTCT 57.250 34.615 18.89 18.89 36.50 2.40
2397 4926 9.225436 CAATTAGAAGAATAAGGAGGCCTATTC 57.775 37.037 15.49 15.49 31.13 1.75
2398 4927 8.728098 ACAATTAGAAGAATAAGGAGGCCTATT 58.272 33.333 4.42 6.58 31.13 1.73
2399 4928 8.281529 ACAATTAGAAGAATAAGGAGGCCTAT 57.718 34.615 4.42 0.00 31.13 2.57
2400 4929 7.691993 ACAATTAGAAGAATAAGGAGGCCTA 57.308 36.000 4.42 0.00 31.13 3.93
2401 4930 6.582929 ACAATTAGAAGAATAAGGAGGCCT 57.417 37.500 3.86 3.86 33.87 5.19
2402 4931 6.828785 TGAACAATTAGAAGAATAAGGAGGCC 59.171 38.462 0.00 0.00 0.00 5.19
2403 4932 7.554476 ACTGAACAATTAGAAGAATAAGGAGGC 59.446 37.037 0.00 0.00 0.00 4.70
2404 4933 9.103861 GACTGAACAATTAGAAGAATAAGGAGG 57.896 37.037 0.00 0.00 0.00 4.30
2405 4934 9.658799 TGACTGAACAATTAGAAGAATAAGGAG 57.341 33.333 0.00 0.00 0.00 3.69
2717 5254 0.855598 ATGGGATCCTCACCATTGGG 59.144 55.000 12.58 0.00 44.85 4.12
2725 5262 6.975471 AATATATTGTCCATGGGATCCTCA 57.025 37.500 13.02 8.57 32.73 3.86
2789 5331 0.909623 ACCGAGGTTCGAATCCCATT 59.090 50.000 4.40 0.00 43.74 3.16
2935 5481 1.749063 GTGTTAATGTTAGGGGCAGCC 59.251 52.381 1.26 1.26 0.00 4.85
2991 5643 6.373005 TGGATAGTCATTTGAGGAGTGAAA 57.627 37.500 0.00 0.00 0.00 2.69
2993 5645 7.419057 GGTTATGGATAGTCATTTGAGGAGTGA 60.419 40.741 0.00 0.00 0.00 3.41
3110 5762 2.955660 GTCTGGGTTTTGTCCAACATCA 59.044 45.455 0.00 0.00 33.36 3.07
3130 5782 0.763035 AGCTTCACGTTTACCAGGGT 59.237 50.000 0.00 0.00 0.00 4.34
3156 5808 5.700832 GCTATCGATTTGTGAATCCATGGTA 59.299 40.000 12.58 0.00 38.76 3.25
3343 6055 2.489275 GCTGTTGGTGGTGGTGGTG 61.489 63.158 0.00 0.00 0.00 4.17
3344 6056 2.123897 GCTGTTGGTGGTGGTGGT 60.124 61.111 0.00 0.00 0.00 4.16
3345 6057 1.756172 TTGCTGTTGGTGGTGGTGG 60.756 57.895 0.00 0.00 0.00 4.61
3346 6058 1.318886 TGTTGCTGTTGGTGGTGGTG 61.319 55.000 0.00 0.00 0.00 4.17
3347 6059 1.000270 TGTTGCTGTTGGTGGTGGT 60.000 52.632 0.00 0.00 0.00 4.16
3348 6060 1.735360 CTGTTGCTGTTGGTGGTGG 59.265 57.895 0.00 0.00 0.00 4.61
3349 6061 1.066257 GCTGTTGCTGTTGGTGGTG 59.934 57.895 0.00 0.00 36.03 4.17
3350 6062 3.525221 GCTGTTGCTGTTGGTGGT 58.475 55.556 0.00 0.00 36.03 4.16
3505 6289 0.537143 TTGTGCGCTCTGGTTTCCAT 60.537 50.000 9.73 0.00 30.82 3.41
3575 6414 1.953686 GCTTGTTTGAACTACTGGGCA 59.046 47.619 0.00 0.00 0.00 5.36
3582 6421 1.160946 TGCGGCGCTTGTTTGAACTA 61.161 50.000 33.26 4.50 0.00 2.24
3707 6556 3.160585 CCTCCACCTTCACAGGCA 58.839 61.111 0.00 0.00 45.56 4.75
3842 6691 4.081420 GGTCACAAGTACAGATGAGATGGT 60.081 45.833 0.00 0.00 0.00 3.55
3889 6851 4.586235 AGCCTTGGCGCAGTGGTT 62.586 61.111 10.83 2.12 0.00 3.67
3899 6861 2.045926 CACGAAGGGGAGCCTTGG 60.046 66.667 0.00 0.00 0.00 3.61
3955 6917 9.053840 TGTAATCACGTGGAAGTTTATTTTGTA 57.946 29.630 17.00 0.00 0.00 2.41
4017 6979 5.819379 TGACTTGGATATTTTCAGCTAGCAG 59.181 40.000 18.83 9.54 0.00 4.24
4112 7077 6.079763 GCTATACACCATTGATATTTGCACG 58.920 40.000 0.00 0.00 0.00 5.34
4250 7225 4.214119 CCACAATAGTTTATGCCCTCGATG 59.786 45.833 0.00 0.00 0.00 3.84
4316 7291 7.676947 TGATAGTTTTAGTTACACCTCTGCTT 58.323 34.615 0.00 0.00 0.00 3.91
4472 7448 6.003950 CCATTCTTCTTGTGGTCCTTTTAGA 58.996 40.000 0.00 0.00 0.00 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.