Multiple sequence alignment - TraesCS3D01G401800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G401800 chr3D 100.000 3920 0 0 1 3920 516387771 516383852 0.000000e+00 7239.0
1 TraesCS3D01G401800 chr3D 90.034 291 25 3 1 291 610435245 610435531 1.330000e-99 374.0
2 TraesCS3D01G401800 chr3D 88.737 293 25 4 1 291 104394339 104394625 6.230000e-93 351.0
3 TraesCS3D01G401800 chr3D 94.118 85 4 1 298 381 324782780 324782864 1.140000e-25 128.0
4 TraesCS3D01G401800 chr3D 93.023 86 4 2 298 382 330910938 330910854 1.480000e-24 124.0
5 TraesCS3D01G401800 chr3D 89.231 65 6 1 2482 2546 48365691 48365628 3.250000e-11 80.5
6 TraesCS3D01G401800 chr3A 94.435 3468 158 18 481 3920 651590251 651586791 0.000000e+00 5302.0
7 TraesCS3D01G401800 chr3B 93.770 3451 155 25 481 3920 679648126 679644725 0.000000e+00 5127.0
8 TraesCS3D01G401800 chr1A 76.701 970 201 18 1859 2820 459950084 459949132 2.090000e-142 516.0
9 TraesCS3D01G401800 chr1A 94.545 110 6 0 373 482 402950627 402950736 1.870000e-38 171.0
10 TraesCS3D01G401800 chr1D 76.289 970 205 18 1859 2820 360390303 360389351 9.780000e-136 494.0
11 TraesCS3D01G401800 chr1D 91.579 285 20 2 5 289 470919776 470920056 1.320000e-104 390.0
12 TraesCS3D01G401800 chr1D 87.500 296 29 4 1 291 360892109 360891817 6.280000e-88 335.0
13 TraesCS3D01G401800 chr4D 89.078 293 22 8 1 292 397123414 397123697 4.820000e-94 355.0
14 TraesCS3D01G401800 chr4D 94.048 84 2 3 298 380 383876565 383876484 1.480000e-24 124.0
15 TraesCS3D01G401800 chr5B 88.396 293 29 5 1 291 571193894 571193605 8.060000e-92 348.0
16 TraesCS3D01G401800 chr5D 86.348 293 32 6 1 290 242647890 242647603 2.940000e-81 313.0
17 TraesCS3D01G401800 chr5D 92.222 90 4 3 298 385 465704720 465704632 1.480000e-24 124.0
18 TraesCS3D01G401800 chr2B 86.195 297 31 9 1 291 470070096 470070388 2.940000e-81 313.0
19 TraesCS3D01G401800 chr2B 78.889 90 17 2 2460 2548 723043321 723043233 4.230000e-05 60.2
20 TraesCS3D01G401800 chr6B 86.149 296 28 12 1 291 171214333 171214046 1.370000e-79 307.0
21 TraesCS3D01G401800 chr7A 93.548 186 10 2 2527 2712 717067806 717067623 3.860000e-70 276.0
22 TraesCS3D01G401800 chr7A 95.588 68 2 1 2371 2438 717067868 717067802 1.490000e-19 108.0
23 TraesCS3D01G401800 chr7D 91.724 145 9 1 2569 2713 621613723 621613582 8.590000e-47 198.0
24 TraesCS3D01G401800 chr7D 90.826 109 5 4 2215 2323 621613986 621613883 1.470000e-29 141.0
25 TraesCS3D01G401800 chr7D 97.403 77 1 1 298 373 265164895 265164971 3.180000e-26 130.0
26 TraesCS3D01G401800 chr7D 97.059 68 1 1 2371 2438 621613802 621613736 3.200000e-21 113.0
27 TraesCS3D01G401800 chr7B 91.509 106 5 2 2608 2713 718445362 718445463 4.080000e-30 143.0
28 TraesCS3D01G401800 chr7B 90.826 109 5 4 2215 2323 718445130 718445233 1.470000e-29 141.0
29 TraesCS3D01G401800 chrUn 90.826 109 5 4 2215 2323 314006667 314006564 1.470000e-29 141.0
30 TraesCS3D01G401800 chr2D 98.684 76 0 1 298 372 644985661 644985586 2.460000e-27 134.0
31 TraesCS3D01G401800 chr2D 95.238 84 2 2 298 380 55412275 55412357 8.840000e-27 132.0
32 TraesCS3D01G401800 chr2D 96.203 79 1 2 297 374 345277365 345277442 1.140000e-25 128.0
33 TraesCS3D01G401800 chr2D 80.220 91 14 3 2460 2548 595290206 595290118 9.090000e-07 65.8
34 TraesCS3D01G401800 chr2D 89.583 48 5 0 2497 2544 492022266 492022219 1.180000e-05 62.1
35 TraesCS3D01G401800 chr6A 92.473 93 3 4 298 387 82088569 82088478 3.180000e-26 130.0
36 TraesCS3D01G401800 chr6A 77.160 162 32 5 2379 2536 570382512 570382352 5.390000e-14 89.8
37 TraesCS3D01G401800 chr2A 80.220 91 14 3 2460 2548 729500624 729500536 9.090000e-07 65.8
38 TraesCS3D01G401800 chr2A 89.583 48 5 0 2497 2544 637222695 637222648 1.180000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G401800 chr3D 516383852 516387771 3919 True 7239 7239 100.000 1 3920 1 chr3D.!!$R3 3919
1 TraesCS3D01G401800 chr3A 651586791 651590251 3460 True 5302 5302 94.435 481 3920 1 chr3A.!!$R1 3439
2 TraesCS3D01G401800 chr3B 679644725 679648126 3401 True 5127 5127 93.770 481 3920 1 chr3B.!!$R1 3439
3 TraesCS3D01G401800 chr1A 459949132 459950084 952 True 516 516 76.701 1859 2820 1 chr1A.!!$R1 961
4 TraesCS3D01G401800 chr1D 360389351 360390303 952 True 494 494 76.289 1859 2820 1 chr1D.!!$R1 961

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
442 443 0.033208 TGCCAACTGGATCAATCCCC 60.033 55.0 6.57 0.0 46.59 4.81 F
685 690 0.034476 TCTCATGATCCTCGCCATGC 59.966 55.0 0.00 0.0 39.82 4.06 F
923 934 0.456221 ATAGACTCCAACGCCGAGTG 59.544 55.0 4.53 0.0 40.67 3.51 F
1722 1734 0.606944 TTACCCACACCAACATCGCC 60.607 55.0 0.00 0.0 0.00 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1695 1707 0.618458 TGGTGTGGGTAATGGAGCTC 59.382 55.0 4.71 4.71 0.00 4.09 R
1764 1776 1.424493 AAACGAGCAGCGCTATGAGC 61.424 55.0 10.99 9.96 46.04 4.26 R
1810 1822 1.782028 GACAAACCGCGGTTCTTGCT 61.782 55.0 41.09 24.38 37.35 3.91 R
3197 3221 0.037590 TTGTTTCCCTGATCACCGGG 59.962 55.0 12.90 12.90 42.05 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.319133 GGCATGCCTCTTTCGGAA 57.681 55.556 29.98 0.00 0.00 4.30
18 19 2.566824 GGCATGCCTCTTTCGGAAA 58.433 52.632 29.98 2.78 0.00 3.13
19 20 0.453390 GGCATGCCTCTTTCGGAAAG 59.547 55.000 29.98 21.64 39.88 2.62
20 21 0.453390 GCATGCCTCTTTCGGAAAGG 59.547 55.000 25.66 15.57 39.01 3.11
21 22 1.098050 CATGCCTCTTTCGGAAAGGG 58.902 55.000 25.66 23.41 38.75 3.95
22 23 0.991920 ATGCCTCTTTCGGAAAGGGA 59.008 50.000 27.71 16.81 41.66 4.20
23 24 0.768622 TGCCTCTTTCGGAAAGGGAA 59.231 50.000 27.71 19.29 41.66 3.97
24 25 1.144093 TGCCTCTTTCGGAAAGGGAAA 59.856 47.619 27.71 14.52 41.66 3.13
25 26 2.235891 GCCTCTTTCGGAAAGGGAAAA 58.764 47.619 27.71 9.72 41.66 2.29
26 27 2.626266 GCCTCTTTCGGAAAGGGAAAAA 59.374 45.455 27.71 9.07 41.66 1.94
41 42 3.424780 AAAAACCCGTGCTCCCGGT 62.425 57.895 0.00 0.00 46.66 5.28
42 43 2.914756 AAAAACCCGTGCTCCCGGTT 62.915 55.000 0.00 4.62 46.66 4.44
43 44 3.837570 AAACCCGTGCTCCCGGTTC 62.838 63.158 0.00 0.00 46.66 3.62
47 48 4.675029 CGTGCTCCCGGTTCGGTT 62.675 66.667 0.00 0.00 46.80 4.44
48 49 2.281276 GTGCTCCCGGTTCGGTTT 60.281 61.111 0.00 0.00 46.80 3.27
49 50 2.031465 TGCTCCCGGTTCGGTTTC 59.969 61.111 0.00 0.00 46.80 2.78
50 51 2.346365 GCTCCCGGTTCGGTTTCT 59.654 61.111 0.00 0.00 46.80 2.52
51 52 1.302271 GCTCCCGGTTCGGTTTCTT 60.302 57.895 0.00 0.00 46.80 2.52
52 53 1.296755 GCTCCCGGTTCGGTTTCTTC 61.297 60.000 0.00 0.00 46.80 2.87
53 54 1.005867 TCCCGGTTCGGTTTCTTCG 60.006 57.895 0.00 0.00 46.80 3.79
54 55 1.301165 CCCGGTTCGGTTTCTTCGT 60.301 57.895 0.00 0.00 46.80 3.85
55 56 0.881600 CCCGGTTCGGTTTCTTCGTT 60.882 55.000 0.00 0.00 46.80 3.85
56 57 0.509929 CCGGTTCGGTTTCTTCGTTC 59.490 55.000 0.00 0.00 42.73 3.95
57 58 0.160182 CGGTTCGGTTTCTTCGTTCG 59.840 55.000 0.00 0.00 0.00 3.95
58 59 0.509929 GGTTCGGTTTCTTCGTTCGG 59.490 55.000 0.00 0.00 0.00 4.30
59 60 1.211743 GTTCGGTTTCTTCGTTCGGT 58.788 50.000 0.00 0.00 0.00 4.69
60 61 1.594397 GTTCGGTTTCTTCGTTCGGTT 59.406 47.619 0.00 0.00 0.00 4.44
61 62 1.938625 TCGGTTTCTTCGTTCGGTTT 58.061 45.000 0.00 0.00 0.00 3.27
62 63 2.278854 TCGGTTTCTTCGTTCGGTTTT 58.721 42.857 0.00 0.00 0.00 2.43
63 64 2.677337 TCGGTTTCTTCGTTCGGTTTTT 59.323 40.909 0.00 0.00 0.00 1.94
98 99 7.980742 AAAAAGTTCGTCAAAACCTATCAAC 57.019 32.000 0.00 0.00 0.00 3.18
99 100 6.687081 AAAGTTCGTCAAAACCTATCAACA 57.313 33.333 0.00 0.00 0.00 3.33
100 101 6.877611 AAGTTCGTCAAAACCTATCAACAT 57.122 33.333 0.00 0.00 0.00 2.71
101 102 6.241207 AGTTCGTCAAAACCTATCAACATG 57.759 37.500 0.00 0.00 0.00 3.21
102 103 5.181245 AGTTCGTCAAAACCTATCAACATGG 59.819 40.000 0.00 0.00 0.00 3.66
103 104 4.900684 TCGTCAAAACCTATCAACATGGA 58.099 39.130 0.00 0.00 0.00 3.41
104 105 5.496556 TCGTCAAAACCTATCAACATGGAT 58.503 37.500 0.00 0.00 0.00 3.41
105 106 5.943416 TCGTCAAAACCTATCAACATGGATT 59.057 36.000 0.00 0.00 0.00 3.01
106 107 6.093495 TCGTCAAAACCTATCAACATGGATTC 59.907 38.462 0.00 0.00 0.00 2.52
107 108 6.094048 CGTCAAAACCTATCAACATGGATTCT 59.906 38.462 0.00 0.00 0.00 2.40
108 109 7.279981 CGTCAAAACCTATCAACATGGATTCTA 59.720 37.037 0.00 0.00 0.00 2.10
109 110 8.616076 GTCAAAACCTATCAACATGGATTCTAG 58.384 37.037 0.00 0.00 0.00 2.43
110 111 8.328758 TCAAAACCTATCAACATGGATTCTAGT 58.671 33.333 0.00 0.00 0.00 2.57
111 112 8.960591 CAAAACCTATCAACATGGATTCTAGTT 58.039 33.333 0.00 0.00 0.00 2.24
112 113 9.533831 AAAACCTATCAACATGGATTCTAGTTT 57.466 29.630 0.00 0.00 0.00 2.66
113 114 9.533831 AAACCTATCAACATGGATTCTAGTTTT 57.466 29.630 0.00 0.00 0.00 2.43
114 115 8.511604 ACCTATCAACATGGATTCTAGTTTTG 57.488 34.615 0.00 0.00 0.00 2.44
115 116 8.328758 ACCTATCAACATGGATTCTAGTTTTGA 58.671 33.333 0.00 0.00 0.00 2.69
116 117 9.177608 CCTATCAACATGGATTCTAGTTTTGAA 57.822 33.333 0.00 0.00 0.00 2.69
118 119 8.868522 ATCAACATGGATTCTAGTTTTGAAGA 57.131 30.769 0.00 0.00 0.00 2.87
119 120 8.868522 TCAACATGGATTCTAGTTTTGAAGAT 57.131 30.769 0.00 0.00 0.00 2.40
120 121 8.950210 TCAACATGGATTCTAGTTTTGAAGATC 58.050 33.333 0.00 0.00 0.00 2.75
121 122 8.954350 CAACATGGATTCTAGTTTTGAAGATCT 58.046 33.333 0.00 0.00 0.00 2.75
122 123 8.729805 ACATGGATTCTAGTTTTGAAGATCTC 57.270 34.615 0.00 0.00 0.00 2.75
123 124 7.493971 ACATGGATTCTAGTTTTGAAGATCTCG 59.506 37.037 0.00 0.00 0.00 4.04
124 125 7.170393 TGGATTCTAGTTTTGAAGATCTCGA 57.830 36.000 0.00 0.00 0.00 4.04
125 126 7.036220 TGGATTCTAGTTTTGAAGATCTCGAC 58.964 38.462 0.00 0.00 0.00 4.20
126 127 6.197468 GGATTCTAGTTTTGAAGATCTCGACG 59.803 42.308 0.00 0.00 0.00 5.12
127 128 4.413087 TCTAGTTTTGAAGATCTCGACGC 58.587 43.478 0.00 0.00 0.00 5.19
128 129 1.986378 AGTTTTGAAGATCTCGACGCG 59.014 47.619 3.53 3.53 0.00 6.01
129 130 1.983605 GTTTTGAAGATCTCGACGCGA 59.016 47.619 15.93 0.00 0.00 5.87
138 139 3.280211 TCGACGCGAGGAATCCAA 58.720 55.556 15.93 0.00 0.00 3.53
139 140 1.153901 TCGACGCGAGGAATCCAAC 60.154 57.895 15.93 0.00 0.00 3.77
140 141 2.505498 CGACGCGAGGAATCCAACG 61.505 63.158 15.93 12.84 0.00 4.10
141 142 2.125673 ACGCGAGGAATCCAACGG 60.126 61.111 15.93 11.24 0.00 4.44
142 143 2.125673 CGCGAGGAATCCAACGGT 60.126 61.111 17.17 0.00 0.00 4.83
143 144 2.452813 CGCGAGGAATCCAACGGTG 61.453 63.158 17.17 0.00 0.00 4.94
144 145 1.079405 GCGAGGAATCCAACGGTGA 60.079 57.895 17.17 0.00 0.00 4.02
145 146 0.672401 GCGAGGAATCCAACGGTGAA 60.672 55.000 17.17 0.00 0.00 3.18
146 147 1.803334 CGAGGAATCCAACGGTGAAA 58.197 50.000 0.00 0.00 0.00 2.69
147 148 2.147958 CGAGGAATCCAACGGTGAAAA 58.852 47.619 0.00 0.00 0.00 2.29
148 149 2.095919 CGAGGAATCCAACGGTGAAAAC 60.096 50.000 0.00 0.00 0.00 2.43
149 150 1.877443 AGGAATCCAACGGTGAAAACG 59.123 47.619 0.00 0.00 37.36 3.60
157 158 1.925229 ACGGTGAAAACGTTTCGAGA 58.075 45.000 21.87 2.72 42.70 4.04
158 159 2.476821 ACGGTGAAAACGTTTCGAGAT 58.523 42.857 21.87 4.51 42.70 2.75
159 160 2.867975 ACGGTGAAAACGTTTCGAGATT 59.132 40.909 21.87 3.81 42.70 2.40
160 161 3.310501 ACGGTGAAAACGTTTCGAGATTT 59.689 39.130 21.87 3.11 42.70 2.17
161 162 3.657625 CGGTGAAAACGTTTCGAGATTTG 59.342 43.478 15.01 0.00 0.00 2.32
162 163 3.972502 GGTGAAAACGTTTCGAGATTTGG 59.027 43.478 15.01 0.00 0.00 3.28
163 164 4.260866 GGTGAAAACGTTTCGAGATTTGGA 60.261 41.667 15.01 0.00 0.00 3.53
164 165 4.669283 GTGAAAACGTTTCGAGATTTGGAC 59.331 41.667 15.01 0.00 0.00 4.02
165 166 4.333095 TGAAAACGTTTCGAGATTTGGACA 59.667 37.500 15.01 0.00 0.00 4.02
166 167 3.872560 AACGTTTCGAGATTTGGACAC 57.127 42.857 0.00 0.00 0.00 3.67
167 168 2.828877 ACGTTTCGAGATTTGGACACA 58.171 42.857 0.00 0.00 0.00 3.72
168 169 2.542595 ACGTTTCGAGATTTGGACACAC 59.457 45.455 0.00 0.00 0.00 3.82
169 170 2.409752 CGTTTCGAGATTTGGACACACG 60.410 50.000 0.00 0.00 0.00 4.49
170 171 2.519377 TTCGAGATTTGGACACACGT 57.481 45.000 0.00 0.00 0.00 4.49
171 172 2.519377 TCGAGATTTGGACACACGTT 57.481 45.000 0.00 0.00 0.00 3.99
172 173 2.828877 TCGAGATTTGGACACACGTTT 58.171 42.857 0.00 0.00 0.00 3.60
173 174 3.199677 TCGAGATTTGGACACACGTTTT 58.800 40.909 0.00 0.00 0.00 2.43
174 175 4.370049 TCGAGATTTGGACACACGTTTTA 58.630 39.130 0.00 0.00 0.00 1.52
175 176 4.809958 TCGAGATTTGGACACACGTTTTAA 59.190 37.500 0.00 0.00 0.00 1.52
176 177 5.050634 TCGAGATTTGGACACACGTTTTAAG 60.051 40.000 0.00 0.00 0.00 1.85
177 178 5.050634 CGAGATTTGGACACACGTTTTAAGA 60.051 40.000 0.00 0.00 0.00 2.10
178 179 6.300354 AGATTTGGACACACGTTTTAAGAG 57.700 37.500 0.00 0.00 0.00 2.85
179 180 6.053005 AGATTTGGACACACGTTTTAAGAGA 58.947 36.000 0.00 0.00 0.00 3.10
180 181 6.710744 AGATTTGGACACACGTTTTAAGAGAT 59.289 34.615 0.00 0.00 0.00 2.75
181 182 7.876068 AGATTTGGACACACGTTTTAAGAGATA 59.124 33.333 0.00 0.00 0.00 1.98
182 183 7.789273 TTTGGACACACGTTTTAAGAGATAA 57.211 32.000 0.00 0.00 0.00 1.75
183 184 7.789273 TTGGACACACGTTTTAAGAGATAAA 57.211 32.000 0.00 0.00 0.00 1.40
184 185 7.789273 TGGACACACGTTTTAAGAGATAAAA 57.211 32.000 0.00 0.00 40.35 1.52
211 212 9.549509 CGTTTTGAATAAACGGATCTATGAAAA 57.450 29.630 13.31 0.00 46.39 2.29
232 233 6.605471 AAAAAGGAAAAACTCTCAGGTTGT 57.395 33.333 0.00 0.00 0.00 3.32
233 234 5.836821 AAAGGAAAAACTCTCAGGTTGTC 57.163 39.130 0.00 0.00 0.00 3.18
234 235 3.467803 AGGAAAAACTCTCAGGTTGTCG 58.532 45.455 0.00 0.00 0.00 4.35
235 236 2.031944 GGAAAAACTCTCAGGTTGTCGC 60.032 50.000 0.00 0.00 0.00 5.19
236 237 1.217882 AAAACTCTCAGGTTGTCGCG 58.782 50.000 0.00 0.00 0.00 5.87
237 238 0.387929 AAACTCTCAGGTTGTCGCGA 59.612 50.000 3.71 3.71 0.00 5.87
238 239 0.318784 AACTCTCAGGTTGTCGCGAC 60.319 55.000 31.66 31.66 0.00 5.19
239 240 1.444553 CTCTCAGGTTGTCGCGACC 60.445 63.158 34.34 21.38 38.16 4.79
243 244 4.003788 AGGTTGTCGCGACCTGGG 62.004 66.667 34.34 0.00 45.73 4.45
244 245 3.998672 GGTTGTCGCGACCTGGGA 61.999 66.667 34.34 14.55 35.15 4.37
245 246 2.029964 GTTGTCGCGACCTGGGAA 59.970 61.111 34.34 19.71 41.74 3.97
246 247 2.027625 GTTGTCGCGACCTGGGAAG 61.028 63.158 34.34 0.00 41.74 3.46
247 248 3.234630 TTGTCGCGACCTGGGAAGG 62.235 63.158 34.34 0.00 41.74 3.46
248 249 3.692406 GTCGCGACCTGGGAAGGT 61.692 66.667 28.61 0.00 46.40 3.50
249 250 3.691342 TCGCGACCTGGGAAGGTG 61.691 66.667 3.71 0.00 43.24 4.00
250 251 4.760047 CGCGACCTGGGAAGGTGG 62.760 72.222 0.00 2.14 43.24 4.61
251 252 3.637273 GCGACCTGGGAAGGTGGT 61.637 66.667 1.25 0.00 43.24 4.16
252 253 2.347490 CGACCTGGGAAGGTGGTG 59.653 66.667 1.25 0.00 43.24 4.17
253 254 2.516888 CGACCTGGGAAGGTGGTGT 61.517 63.158 1.25 0.00 43.24 4.16
254 255 1.073199 GACCTGGGAAGGTGGTGTG 59.927 63.158 1.25 0.00 43.24 3.82
255 256 1.696314 ACCTGGGAAGGTGGTGTGT 60.696 57.895 0.00 0.00 41.33 3.72
256 257 1.286305 ACCTGGGAAGGTGGTGTGTT 61.286 55.000 0.00 0.00 41.33 3.32
257 258 0.537371 CCTGGGAAGGTGGTGTGTTC 60.537 60.000 0.00 0.00 0.00 3.18
258 259 0.474184 CTGGGAAGGTGGTGTGTTCT 59.526 55.000 0.00 0.00 0.00 3.01
259 260 0.923358 TGGGAAGGTGGTGTGTTCTT 59.077 50.000 0.00 0.00 0.00 2.52
260 261 1.286553 TGGGAAGGTGGTGTGTTCTTT 59.713 47.619 0.00 0.00 0.00 2.52
261 262 1.681264 GGGAAGGTGGTGTGTTCTTTG 59.319 52.381 0.00 0.00 0.00 2.77
262 263 1.067060 GGAAGGTGGTGTGTTCTTTGC 59.933 52.381 0.00 0.00 0.00 3.68
263 264 1.748493 GAAGGTGGTGTGTTCTTTGCA 59.252 47.619 0.00 0.00 0.00 4.08
264 265 1.846007 AGGTGGTGTGTTCTTTGCAA 58.154 45.000 0.00 0.00 0.00 4.08
265 266 1.476488 AGGTGGTGTGTTCTTTGCAAC 59.524 47.619 0.00 0.00 0.00 4.17
266 267 1.544686 GTGGTGTGTTCTTTGCAACG 58.455 50.000 0.00 0.00 0.00 4.10
267 268 1.131504 GTGGTGTGTTCTTTGCAACGA 59.868 47.619 0.00 0.00 0.00 3.85
268 269 1.400142 TGGTGTGTTCTTTGCAACGAG 59.600 47.619 0.00 0.00 0.00 4.18
269 270 1.400494 GGTGTGTTCTTTGCAACGAGT 59.600 47.619 0.00 0.00 0.00 4.18
270 271 2.610374 GGTGTGTTCTTTGCAACGAGTA 59.390 45.455 0.00 0.00 0.00 2.59
271 272 3.545426 GGTGTGTTCTTTGCAACGAGTAC 60.545 47.826 0.00 6.66 0.00 2.73
272 273 3.308866 GTGTGTTCTTTGCAACGAGTACT 59.691 43.478 16.78 0.00 0.00 2.73
273 274 3.554324 TGTGTTCTTTGCAACGAGTACTC 59.446 43.478 13.18 13.18 0.00 2.59
274 275 3.059800 GTGTTCTTTGCAACGAGTACTCC 60.060 47.826 17.23 3.69 0.00 3.85
275 276 3.181469 TGTTCTTTGCAACGAGTACTCCT 60.181 43.478 17.23 2.73 0.00 3.69
276 277 3.746045 TCTTTGCAACGAGTACTCCTT 57.254 42.857 17.23 9.18 0.00 3.36
277 278 4.859304 TCTTTGCAACGAGTACTCCTTA 57.141 40.909 17.23 0.00 0.00 2.69
278 279 5.204409 TCTTTGCAACGAGTACTCCTTAA 57.796 39.130 17.23 2.08 0.00 1.85
279 280 5.790593 TCTTTGCAACGAGTACTCCTTAAT 58.209 37.500 17.23 0.00 0.00 1.40
280 281 6.228258 TCTTTGCAACGAGTACTCCTTAATT 58.772 36.000 17.23 1.76 0.00 1.40
281 282 7.380536 TCTTTGCAACGAGTACTCCTTAATTA 58.619 34.615 17.23 0.00 0.00 1.40
282 283 7.544566 TCTTTGCAACGAGTACTCCTTAATTAG 59.455 37.037 17.23 7.81 0.00 1.73
283 284 6.276832 TGCAACGAGTACTCCTTAATTAGT 57.723 37.500 17.23 3.77 0.00 2.24
284 285 6.097356 TGCAACGAGTACTCCTTAATTAGTG 58.903 40.000 17.23 1.71 0.00 2.74
285 286 6.071784 TGCAACGAGTACTCCTTAATTAGTGA 60.072 38.462 17.23 0.00 0.00 3.41
286 287 6.979238 GCAACGAGTACTCCTTAATTAGTGAT 59.021 38.462 17.23 0.00 0.00 3.06
287 288 7.491696 GCAACGAGTACTCCTTAATTAGTGATT 59.508 37.037 17.23 0.00 0.00 2.57
288 289 9.367444 CAACGAGTACTCCTTAATTAGTGATTT 57.633 33.333 17.23 0.00 0.00 2.17
289 290 9.583765 AACGAGTACTCCTTAATTAGTGATTTC 57.416 33.333 17.23 0.00 0.00 2.17
290 291 7.914346 ACGAGTACTCCTTAATTAGTGATTTCG 59.086 37.037 17.23 2.39 0.00 3.46
291 292 7.096558 CGAGTACTCCTTAATTAGTGATTTCGC 60.097 40.741 17.23 0.00 0.00 4.70
292 293 7.783042 AGTACTCCTTAATTAGTGATTTCGCT 58.217 34.615 0.00 0.00 40.27 4.93
293 294 6.910536 ACTCCTTAATTAGTGATTTCGCTG 57.089 37.500 3.93 0.00 37.28 5.18
294 295 6.640518 ACTCCTTAATTAGTGATTTCGCTGA 58.359 36.000 3.93 0.00 37.28 4.26
295 296 7.275920 ACTCCTTAATTAGTGATTTCGCTGAT 58.724 34.615 3.93 0.00 37.28 2.90
296 297 7.770897 ACTCCTTAATTAGTGATTTCGCTGATT 59.229 33.333 13.49 13.49 42.66 2.57
297 298 8.506168 TCCTTAATTAGTGATTTCGCTGATTT 57.494 30.769 14.01 4.27 41.14 2.17
298 299 8.397906 TCCTTAATTAGTGATTTCGCTGATTTG 58.602 33.333 14.01 9.08 41.14 2.32
299 300 7.166473 CCTTAATTAGTGATTTCGCTGATTTGC 59.834 37.037 14.01 0.00 41.14 3.68
300 301 5.565592 ATTAGTGATTTCGCTGATTTGCA 57.434 34.783 3.93 0.00 37.28 4.08
302 303 2.816087 AGTGATTTCGCTGATTTGCAGT 59.184 40.909 0.00 0.00 46.62 4.40
306 307 2.872925 CGCTGATTTGCAGTGCGC 60.873 61.111 11.20 0.00 46.94 6.09
307 308 2.505557 GCTGATTTGCAGTGCGCC 60.506 61.111 11.20 0.00 46.62 6.53
308 309 2.956194 CTGATTTGCAGTGCGCCA 59.044 55.556 11.20 4.63 41.33 5.69
309 310 1.443194 CTGATTTGCAGTGCGCCAC 60.443 57.895 11.20 3.02 41.33 5.01
310 311 1.859427 CTGATTTGCAGTGCGCCACT 61.859 55.000 11.20 5.73 46.51 4.00
311 312 1.286880 GATTTGCAGTGCGCCACTT 59.713 52.632 11.20 0.00 42.59 3.16
312 313 1.005294 GATTTGCAGTGCGCCACTTG 61.005 55.000 11.20 0.00 42.59 3.16
313 314 1.737355 ATTTGCAGTGCGCCACTTGT 61.737 50.000 11.20 0.00 42.59 3.16
314 315 2.335052 TTTGCAGTGCGCCACTTGTC 62.335 55.000 11.20 1.45 42.59 3.18
315 316 4.374702 GCAGTGCGCCACTTGTCG 62.375 66.667 4.18 0.00 42.59 4.35
316 317 4.374702 CAGTGCGCCACTTGTCGC 62.375 66.667 4.18 0.00 42.59 5.19
322 323 3.414700 GCCACTTGTCGCGACCTG 61.415 66.667 34.34 27.21 0.00 4.00
323 324 2.338620 CCACTTGTCGCGACCTGA 59.661 61.111 34.34 19.74 0.00 3.86
324 325 1.734477 CCACTTGTCGCGACCTGAG 60.734 63.158 34.34 28.33 0.00 3.35
325 326 1.285950 CACTTGTCGCGACCTGAGA 59.714 57.895 34.34 14.55 0.00 3.27
326 327 0.318699 CACTTGTCGCGACCTGAGAA 60.319 55.000 34.34 20.80 0.00 2.87
327 328 0.039074 ACTTGTCGCGACCTGAGAAG 60.039 55.000 34.34 29.41 41.18 2.85
328 329 0.734253 CTTGTCGCGACCTGAGAAGG 60.734 60.000 34.34 12.93 34.18 3.46
329 330 1.461091 TTGTCGCGACCTGAGAAGGT 61.461 55.000 34.34 0.00 46.40 3.50
330 331 1.444553 GTCGCGACCTGAGAAGGTG 60.445 63.158 28.61 0.00 43.24 4.00
331 332 2.125912 CGCGACCTGAGAAGGTGG 60.126 66.667 0.00 2.14 43.24 4.61
332 333 2.636412 CGCGACCTGAGAAGGTGGA 61.636 63.158 0.00 0.00 43.24 4.02
333 334 1.216710 GCGACCTGAGAAGGTGGAG 59.783 63.158 10.68 0.28 43.24 3.86
334 335 1.536943 GCGACCTGAGAAGGTGGAGT 61.537 60.000 10.68 0.00 43.24 3.85
335 336 0.244994 CGACCTGAGAAGGTGGAGTG 59.755 60.000 1.25 0.00 43.24 3.51
336 337 1.343069 GACCTGAGAAGGTGGAGTGT 58.657 55.000 1.25 0.00 43.24 3.55
337 338 1.694696 GACCTGAGAAGGTGGAGTGTT 59.305 52.381 1.25 0.00 43.24 3.32
338 339 1.694696 ACCTGAGAAGGTGGAGTGTTC 59.305 52.381 0.00 0.00 41.33 3.18
339 340 1.974236 CCTGAGAAGGTGGAGTGTTCT 59.026 52.381 0.00 0.00 33.14 3.01
340 341 2.370189 CCTGAGAAGGTGGAGTGTTCTT 59.630 50.000 0.00 0.00 30.55 2.52
341 342 3.181450 CCTGAGAAGGTGGAGTGTTCTTT 60.181 47.826 0.00 0.00 30.55 2.52
342 343 3.808728 TGAGAAGGTGGAGTGTTCTTTG 58.191 45.455 0.00 0.00 30.55 2.77
343 344 2.550180 GAGAAGGTGGAGTGTTCTTTGC 59.450 50.000 0.00 0.00 30.55 3.68
344 345 2.092429 AGAAGGTGGAGTGTTCTTTGCA 60.092 45.455 0.00 0.00 0.00 4.08
345 346 2.435372 AGGTGGAGTGTTCTTTGCAA 57.565 45.000 0.00 0.00 0.00 4.08
346 347 2.024414 AGGTGGAGTGTTCTTTGCAAC 58.976 47.619 0.00 0.00 0.00 4.17
347 348 1.268539 GGTGGAGTGTTCTTTGCAACG 60.269 52.381 0.00 0.00 0.00 4.10
348 349 1.668751 GTGGAGTGTTCTTTGCAACGA 59.331 47.619 0.00 0.00 0.00 3.85
349 350 1.939934 TGGAGTGTTCTTTGCAACGAG 59.060 47.619 0.00 0.00 0.00 4.18
350 351 1.940613 GGAGTGTTCTTTGCAACGAGT 59.059 47.619 0.00 0.00 0.00 4.18
351 352 3.128349 GGAGTGTTCTTTGCAACGAGTA 58.872 45.455 0.00 0.00 0.00 2.59
352 353 3.059800 GGAGTGTTCTTTGCAACGAGTAC 60.060 47.826 0.00 6.11 0.00 2.73
353 354 3.793559 AGTGTTCTTTGCAACGAGTACT 58.206 40.909 14.37 14.37 0.00 2.73
354 355 3.802685 AGTGTTCTTTGCAACGAGTACTC 59.197 43.478 13.18 13.18 0.00 2.59
355 356 3.059800 GTGTTCTTTGCAACGAGTACTCC 60.060 47.826 17.23 3.69 0.00 3.85
356 357 3.181469 TGTTCTTTGCAACGAGTACTCCT 60.181 43.478 17.23 2.73 0.00 3.69
357 358 3.746045 TCTTTGCAACGAGTACTCCTT 57.254 42.857 17.23 9.18 0.00 3.36
358 359 4.859304 TCTTTGCAACGAGTACTCCTTA 57.141 40.909 17.23 0.00 0.00 2.69
359 360 5.204409 TCTTTGCAACGAGTACTCCTTAA 57.796 39.130 17.23 2.08 0.00 1.85
360 361 5.790593 TCTTTGCAACGAGTACTCCTTAAT 58.209 37.500 17.23 0.00 0.00 1.40
361 362 6.228258 TCTTTGCAACGAGTACTCCTTAATT 58.772 36.000 17.23 1.76 0.00 1.40
362 363 7.380536 TCTTTGCAACGAGTACTCCTTAATTA 58.619 34.615 17.23 0.00 0.00 1.40
363 364 7.544566 TCTTTGCAACGAGTACTCCTTAATTAG 59.455 37.037 17.23 7.81 0.00 1.73
364 365 6.276832 TGCAACGAGTACTCCTTAATTAGT 57.723 37.500 17.23 3.77 0.00 2.24
365 366 6.097356 TGCAACGAGTACTCCTTAATTAGTG 58.903 40.000 17.23 1.71 0.00 2.74
366 367 6.071784 TGCAACGAGTACTCCTTAATTAGTGA 60.072 38.462 17.23 0.00 0.00 3.41
367 368 6.979238 GCAACGAGTACTCCTTAATTAGTGAT 59.021 38.462 17.23 0.00 0.00 3.06
368 369 7.491696 GCAACGAGTACTCCTTAATTAGTGATT 59.508 37.037 17.23 0.00 0.00 2.57
369 370 9.367444 CAACGAGTACTCCTTAATTAGTGATTT 57.633 33.333 17.23 0.00 0.00 2.17
370 371 9.583765 AACGAGTACTCCTTAATTAGTGATTTC 57.416 33.333 17.23 0.00 0.00 2.17
371 372 7.914346 ACGAGTACTCCTTAATTAGTGATTTCG 59.086 37.037 17.23 2.39 0.00 3.46
372 373 7.096558 CGAGTACTCCTTAATTAGTGATTTCGC 60.097 40.741 17.23 0.00 0.00 4.70
373 374 7.783042 AGTACTCCTTAATTAGTGATTTCGCT 58.217 34.615 0.00 0.00 40.27 4.93
374 375 7.921745 AGTACTCCTTAATTAGTGATTTCGCTC 59.078 37.037 0.00 0.00 37.87 5.03
375 376 6.640518 ACTCCTTAATTAGTGATTTCGCTCA 58.359 36.000 0.00 0.00 37.87 4.26
376 377 7.275920 ACTCCTTAATTAGTGATTTCGCTCAT 58.724 34.615 0.00 0.00 37.87 2.90
377 378 7.770897 ACTCCTTAATTAGTGATTTCGCTCATT 59.229 33.333 0.00 1.83 37.87 2.57
378 379 8.506168 TCCTTAATTAGTGATTTCGCTCATTT 57.494 30.769 6.01 0.00 37.87 2.32
379 380 8.956426 TCCTTAATTAGTGATTTCGCTCATTTT 58.044 29.630 6.01 0.00 37.87 1.82
380 381 9.226345 CCTTAATTAGTGATTTCGCTCATTTTC 57.774 33.333 6.01 0.00 37.87 2.29
381 382 9.773328 CTTAATTAGTGATTTCGCTCATTTTCA 57.227 29.630 6.01 0.00 37.87 2.69
383 384 8.679288 AATTAGTGATTTCGCTCATTTTCAAG 57.321 30.769 0.00 0.00 37.87 3.02
384 385 5.051891 AGTGATTTCGCTCATTTTCAAGG 57.948 39.130 0.00 0.00 29.29 3.61
385 386 4.082571 AGTGATTTCGCTCATTTTCAAGGG 60.083 41.667 0.00 0.00 29.29 3.95
386 387 3.193267 TGATTTCGCTCATTTTCAAGGGG 59.807 43.478 0.00 0.00 0.00 4.79
387 388 1.544724 TTCGCTCATTTTCAAGGGGG 58.455 50.000 0.00 0.00 0.00 5.40
388 389 0.404040 TCGCTCATTTTCAAGGGGGT 59.596 50.000 0.00 0.00 0.00 4.95
389 390 0.527565 CGCTCATTTTCAAGGGGGTG 59.472 55.000 0.00 0.00 0.00 4.61
390 391 1.632589 GCTCATTTTCAAGGGGGTGT 58.367 50.000 0.00 0.00 0.00 4.16
391 392 1.273327 GCTCATTTTCAAGGGGGTGTG 59.727 52.381 0.00 0.00 0.00 3.82
392 393 1.895131 CTCATTTTCAAGGGGGTGTGG 59.105 52.381 0.00 0.00 0.00 4.17
393 394 0.975887 CATTTTCAAGGGGGTGTGGG 59.024 55.000 0.00 0.00 0.00 4.61
394 395 0.835971 ATTTTCAAGGGGGTGTGGGC 60.836 55.000 0.00 0.00 0.00 5.36
395 396 2.956077 TTTTCAAGGGGGTGTGGGCC 62.956 60.000 0.00 0.00 0.00 5.80
400 401 4.376170 GGGGGTGTGGGCCGATTT 62.376 66.667 0.00 0.00 0.00 2.17
401 402 2.283604 GGGGTGTGGGCCGATTTT 60.284 61.111 0.00 0.00 0.00 1.82
402 403 2.348104 GGGGTGTGGGCCGATTTTC 61.348 63.158 0.00 0.00 0.00 2.29
403 404 2.348104 GGGTGTGGGCCGATTTTCC 61.348 63.158 0.00 0.00 0.00 3.13
404 405 2.348104 GGTGTGGGCCGATTTTCCC 61.348 63.158 0.00 0.00 42.93 3.97
405 406 1.304134 GTGTGGGCCGATTTTCCCT 60.304 57.895 0.00 0.00 43.04 4.20
406 407 0.034863 GTGTGGGCCGATTTTCCCTA 60.035 55.000 0.00 0.00 43.04 3.53
407 408 0.699399 TGTGGGCCGATTTTCCCTAA 59.301 50.000 0.00 0.00 43.04 2.69
408 409 1.286553 TGTGGGCCGATTTTCCCTAAT 59.713 47.619 0.00 0.00 43.04 1.73
409 410 1.681264 GTGGGCCGATTTTCCCTAATG 59.319 52.381 0.00 0.00 43.04 1.90
410 411 1.328279 GGGCCGATTTTCCCTAATGG 58.672 55.000 0.00 0.00 39.46 3.16
411 412 0.673985 GGCCGATTTTCCCTAATGGC 59.326 55.000 0.00 0.00 40.25 4.40
412 413 0.673985 GCCGATTTTCCCTAATGGCC 59.326 55.000 0.00 0.00 35.01 5.36
413 414 2.026905 GCCGATTTTCCCTAATGGCCA 61.027 52.381 8.56 8.56 35.01 5.36
414 415 2.383855 CCGATTTTCCCTAATGGCCAA 58.616 47.619 10.96 0.00 0.00 4.52
415 416 2.965147 CCGATTTTCCCTAATGGCCAAT 59.035 45.455 10.96 2.97 0.00 3.16
416 417 3.005791 CCGATTTTCCCTAATGGCCAATC 59.994 47.826 10.96 3.56 32.67 2.67
417 418 3.636300 CGATTTTCCCTAATGGCCAATCA 59.364 43.478 10.96 0.00 34.34 2.57
418 419 4.281688 CGATTTTCCCTAATGGCCAATCAT 59.718 41.667 10.96 0.00 34.34 2.45
419 420 5.476599 CGATTTTCCCTAATGGCCAATCATA 59.523 40.000 10.96 0.00 34.34 2.15
420 421 6.015519 CGATTTTCCCTAATGGCCAATCATAA 60.016 38.462 10.96 0.00 34.34 1.90
421 422 7.471260 CGATTTTCCCTAATGGCCAATCATAAA 60.471 37.037 10.96 3.88 34.34 1.40
422 423 6.478512 TTTCCCTAATGGCCAATCATAAAC 57.521 37.500 10.96 0.00 0.00 2.01
423 424 5.402054 TCCCTAATGGCCAATCATAAACT 57.598 39.130 10.96 0.00 0.00 2.66
424 425 5.139727 TCCCTAATGGCCAATCATAAACTG 58.860 41.667 10.96 0.00 0.00 3.16
425 426 4.262164 CCCTAATGGCCAATCATAAACTGC 60.262 45.833 10.96 0.00 0.00 4.40
426 427 3.825143 AATGGCCAATCATAAACTGCC 57.175 42.857 10.96 0.00 39.33 4.85
427 428 2.228545 TGGCCAATCATAAACTGCCA 57.771 45.000 0.61 0.00 45.96 4.92
428 429 2.533916 TGGCCAATCATAAACTGCCAA 58.466 42.857 0.61 0.00 45.23 4.52
429 430 2.233431 TGGCCAATCATAAACTGCCAAC 59.767 45.455 0.61 0.00 45.23 3.77
430 431 2.497273 GGCCAATCATAAACTGCCAACT 59.503 45.455 0.00 0.00 38.73 3.16
431 432 3.514645 GCCAATCATAAACTGCCAACTG 58.485 45.455 0.00 0.00 0.00 3.16
432 433 3.676873 GCCAATCATAAACTGCCAACTGG 60.677 47.826 0.00 0.00 38.53 4.00
433 434 3.763360 CCAATCATAAACTGCCAACTGGA 59.237 43.478 0.00 0.00 37.39 3.86
434 435 4.403432 CCAATCATAAACTGCCAACTGGAT 59.597 41.667 0.00 0.00 37.39 3.41
435 436 5.450965 CCAATCATAAACTGCCAACTGGATC 60.451 44.000 0.00 0.00 37.39 3.36
436 437 4.299586 TCATAAACTGCCAACTGGATCA 57.700 40.909 0.00 0.00 37.39 2.92
437 438 4.661222 TCATAAACTGCCAACTGGATCAA 58.339 39.130 0.00 0.00 37.39 2.57
438 439 5.263599 TCATAAACTGCCAACTGGATCAAT 58.736 37.500 0.00 0.00 37.39 2.57
439 440 5.357878 TCATAAACTGCCAACTGGATCAATC 59.642 40.000 0.00 0.00 37.39 2.67
441 442 1.341383 ACTGCCAACTGGATCAATCCC 60.341 52.381 6.57 0.00 46.59 3.85
442 443 0.033208 TGCCAACTGGATCAATCCCC 60.033 55.000 6.57 0.00 46.59 4.81
443 444 1.103398 GCCAACTGGATCAATCCCCG 61.103 60.000 6.57 0.95 46.59 5.73
444 445 0.255890 CCAACTGGATCAATCCCCGT 59.744 55.000 6.57 1.54 46.59 5.28
445 446 1.488812 CCAACTGGATCAATCCCCGTA 59.511 52.381 6.57 0.00 46.59 4.02
446 447 2.092646 CCAACTGGATCAATCCCCGTAA 60.093 50.000 6.57 0.00 46.59 3.18
447 448 3.435026 CCAACTGGATCAATCCCCGTAAT 60.435 47.826 6.57 0.00 46.59 1.89
448 449 3.492102 ACTGGATCAATCCCCGTAATG 57.508 47.619 6.57 0.00 46.59 1.90
449 450 3.045634 ACTGGATCAATCCCCGTAATGA 58.954 45.455 6.57 0.00 46.59 2.57
450 451 3.181454 ACTGGATCAATCCCCGTAATGAC 60.181 47.826 6.57 0.00 46.59 3.06
451 452 2.105821 TGGATCAATCCCCGTAATGACC 59.894 50.000 6.57 0.00 46.59 4.02
452 453 2.552373 GGATCAATCCCCGTAATGACCC 60.552 54.545 0.00 0.00 41.20 4.46
453 454 0.841289 TCAATCCCCGTAATGACCCC 59.159 55.000 0.00 0.00 0.00 4.95
454 455 0.534203 CAATCCCCGTAATGACCCCG 60.534 60.000 0.00 0.00 0.00 5.73
455 456 0.984432 AATCCCCGTAATGACCCCGT 60.984 55.000 0.00 0.00 0.00 5.28
456 457 0.105555 ATCCCCGTAATGACCCCGTA 60.106 55.000 0.00 0.00 0.00 4.02
457 458 0.105555 TCCCCGTAATGACCCCGTAT 60.106 55.000 0.00 0.00 0.00 3.06
458 459 0.760572 CCCCGTAATGACCCCGTATT 59.239 55.000 0.00 0.00 0.00 1.89
459 460 1.969923 CCCCGTAATGACCCCGTATTA 59.030 52.381 0.00 0.00 0.00 0.98
460 461 2.028748 CCCCGTAATGACCCCGTATTAG 60.029 54.545 0.00 0.00 0.00 1.73
461 462 2.611224 CCCGTAATGACCCCGTATTAGC 60.611 54.545 0.00 0.00 0.00 3.09
462 463 2.611224 CCGTAATGACCCCGTATTAGCC 60.611 54.545 0.00 0.00 0.00 3.93
463 464 2.611224 CGTAATGACCCCGTATTAGCCC 60.611 54.545 0.00 0.00 0.00 5.19
464 465 0.395312 AATGACCCCGTATTAGCCCG 59.605 55.000 0.00 0.00 0.00 6.13
465 466 0.761702 ATGACCCCGTATTAGCCCGT 60.762 55.000 0.00 0.00 0.00 5.28
466 467 1.068585 GACCCCGTATTAGCCCGTG 59.931 63.158 0.00 0.00 0.00 4.94
467 468 1.679559 GACCCCGTATTAGCCCGTGT 61.680 60.000 0.00 0.00 0.00 4.49
468 469 1.227438 CCCCGTATTAGCCCGTGTG 60.227 63.158 0.00 0.00 0.00 3.82
469 470 1.518774 CCCGTATTAGCCCGTGTGT 59.481 57.895 0.00 0.00 0.00 3.72
470 471 0.808453 CCCGTATTAGCCCGTGTGTG 60.808 60.000 0.00 0.00 0.00 3.82
471 472 0.108520 CCGTATTAGCCCGTGTGTGT 60.109 55.000 0.00 0.00 0.00 3.72
472 473 1.134753 CCGTATTAGCCCGTGTGTGTA 59.865 52.381 0.00 0.00 0.00 2.90
473 474 2.456989 CGTATTAGCCCGTGTGTGTAG 58.543 52.381 0.00 0.00 0.00 2.74
474 475 2.199236 GTATTAGCCCGTGTGTGTAGC 58.801 52.381 0.00 0.00 0.00 3.58
475 476 0.611200 ATTAGCCCGTGTGTGTAGCA 59.389 50.000 0.00 0.00 0.00 3.49
476 477 0.611200 TTAGCCCGTGTGTGTAGCAT 59.389 50.000 0.00 0.00 0.00 3.79
477 478 0.611200 TAGCCCGTGTGTGTAGCATT 59.389 50.000 0.00 0.00 0.00 3.56
478 479 0.955428 AGCCCGTGTGTGTAGCATTG 60.955 55.000 0.00 0.00 0.00 2.82
479 480 1.501741 CCCGTGTGTGTAGCATTGC 59.498 57.895 0.00 0.00 0.00 3.56
480 481 1.501741 CCGTGTGTGTAGCATTGCC 59.498 57.895 4.70 0.00 0.00 4.52
481 482 1.132436 CGTGTGTGTAGCATTGCCG 59.868 57.895 4.70 0.00 0.00 5.69
482 483 1.501741 GTGTGTGTAGCATTGCCGG 59.498 57.895 4.70 0.00 0.00 6.13
483 484 1.072332 TGTGTGTAGCATTGCCGGT 59.928 52.632 1.90 0.00 0.00 5.28
484 485 1.233950 TGTGTGTAGCATTGCCGGTG 61.234 55.000 1.90 0.00 0.00 4.94
485 486 2.331893 TGTGTAGCATTGCCGGTGC 61.332 57.895 7.42 7.42 42.81 5.01
645 650 1.183030 TCGAGCCCCGTGAGAGAAAA 61.183 55.000 0.00 0.00 39.75 2.29
685 690 0.034476 TCTCATGATCCTCGCCATGC 59.966 55.000 0.00 0.00 39.82 4.06
732 737 1.875576 CGCCTGAAGAGAAACTGTGCT 60.876 52.381 0.00 0.00 0.00 4.40
756 761 5.296780 TCAGACAGTTGAGCTTTTTAACCTG 59.703 40.000 0.00 0.00 0.00 4.00
864 875 1.539560 ATCACTCGCTCACTGCCACT 61.540 55.000 0.00 0.00 38.78 4.00
869 880 4.008933 GCTCACTGCCACTCGGGT 62.009 66.667 0.00 0.00 39.65 5.28
914 925 1.281867 CCCACAAGGCATAGACTCCAA 59.718 52.381 0.00 0.00 0.00 3.53
923 934 0.456221 ATAGACTCCAACGCCGAGTG 59.544 55.000 4.53 0.00 40.67 3.51
957 969 1.664151 GATCGGTTGATTCGGTTCACC 59.336 52.381 0.00 0.00 34.09 4.02
1477 1489 2.432628 GCTCCAACCTCACCGACG 60.433 66.667 0.00 0.00 0.00 5.12
1663 1675 4.560856 CCTTCGGCCTCGCTCTCG 62.561 72.222 0.00 0.00 36.13 4.04
1722 1734 0.606944 TTACCCACACCAACATCGCC 60.607 55.000 0.00 0.00 0.00 5.54
1764 1776 2.125229 TCCGTCCTCCTCGTCTCG 60.125 66.667 0.00 0.00 0.00 4.04
1814 1826 3.120385 CGACGGCATCAGCAGCAA 61.120 61.111 0.00 0.00 44.61 3.91
1892 1904 4.210304 GCTGTTCGACATCCGCGC 62.210 66.667 0.00 0.00 38.37 6.86
2206 2218 0.930742 GCTCGACCGCTACATCTTCG 60.931 60.000 0.00 0.00 0.00 3.79
2208 2220 0.376152 TCGACCGCTACATCTTCGAC 59.624 55.000 0.00 0.00 33.95 4.20
2367 2385 2.887568 CTGGACGAGGACATGCGC 60.888 66.667 0.00 0.00 0.00 6.09
2963 2981 4.613929 GCTGAAGCTGGACTGGAG 57.386 61.111 0.00 0.00 38.21 3.86
3076 3096 7.966204 GTGTAAATGGATTGTGTACCACATTAC 59.034 37.037 0.39 0.39 44.16 1.89
3093 3113 5.182950 CACATTACCTTGTGCTGAAATACCA 59.817 40.000 0.00 0.00 40.45 3.25
3119 3139 7.692460 ATGAAACATGTAGAAAGATGCTGAA 57.308 32.000 0.00 0.00 29.45 3.02
3120 3140 7.692460 TGAAACATGTAGAAAGATGCTGAAT 57.308 32.000 0.00 0.00 29.45 2.57
3121 3141 7.532571 TGAAACATGTAGAAAGATGCTGAATG 58.467 34.615 0.00 0.00 29.45 2.67
3123 3143 6.922247 ACATGTAGAAAGATGCTGAATGAG 57.078 37.500 0.00 0.00 29.45 2.90
3167 3191 8.307483 TCAAGATTTTCCACACTGTTTTTGTTA 58.693 29.630 0.00 0.00 0.00 2.41
3197 3221 1.217882 CTATTCACCGTCCGGCAATC 58.782 55.000 5.47 0.00 39.32 2.67
3198 3222 0.179067 TATTCACCGTCCGGCAATCC 60.179 55.000 5.47 0.00 39.32 3.01
3250 3274 7.441890 ACAATACCAGTCTACTGATATCTCG 57.558 40.000 11.69 0.44 46.59 4.04
3256 3280 2.417239 GTCTACTGATATCTCGGCTCCG 59.583 54.545 3.98 1.14 41.35 4.63
3257 3281 1.740585 CTACTGATATCTCGGCTCCGG 59.259 57.143 8.59 0.00 40.25 5.14
3278 3302 2.020720 TGGTGGTGCAAACTTACAGTG 58.979 47.619 0.00 0.00 0.00 3.66
3465 3489 3.117512 GGGGATACATTTGATGGAGTGGT 60.118 47.826 0.00 0.00 39.74 4.16
3476 3502 2.207924 GGAGTGGTGTGGAGTCGGT 61.208 63.158 0.00 0.00 0.00 4.69
3626 3652 0.393402 TCATGCTGGTGCTGGATGAC 60.393 55.000 0.00 0.00 35.90 3.06
3708 3747 3.859745 ATAACTTGTACATGATGCGCG 57.140 42.857 15.13 0.00 0.00 6.86
3726 3765 3.176708 CGCGTGCATAGTGTAGTAAACT 58.823 45.455 0.00 0.00 0.00 2.66
3729 3768 4.387862 GCGTGCATAGTGTAGTAAACTTGT 59.612 41.667 0.00 0.00 0.00 3.16
3770 3813 3.281341 TGCTCTATTTGCGTGTTTTGG 57.719 42.857 0.00 0.00 0.00 3.28
3845 3888 9.301153 GGTATTACCAAATGATTGTCAACATTC 57.699 33.333 8.03 0.00 38.42 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.453390 CTTTCCGAAAGAGGCATGCC 59.547 55.000 30.12 30.12 41.02 4.40
2 3 1.098050 CCCTTTCCGAAAGAGGCATG 58.902 55.000 20.43 4.41 41.02 4.06
3 4 0.991920 TCCCTTTCCGAAAGAGGCAT 59.008 50.000 20.43 0.00 41.02 4.40
4 5 0.768622 TTCCCTTTCCGAAAGAGGCA 59.231 50.000 20.43 8.95 41.02 4.75
5 6 1.905637 TTTCCCTTTCCGAAAGAGGC 58.094 50.000 20.43 0.00 41.02 4.70
38 39 0.160182 CGAACGAAGAAACCGAACCG 59.840 55.000 0.00 0.00 0.00 4.44
39 40 0.509929 CCGAACGAAGAAACCGAACC 59.490 55.000 0.00 0.00 0.00 3.62
40 41 1.211743 ACCGAACGAAGAAACCGAAC 58.788 50.000 0.00 0.00 0.00 3.95
41 42 1.938625 AACCGAACGAAGAAACCGAA 58.061 45.000 0.00 0.00 0.00 4.30
42 43 1.938625 AAACCGAACGAAGAAACCGA 58.061 45.000 0.00 0.00 0.00 4.69
43 44 2.742954 AAAACCGAACGAAGAAACCG 57.257 45.000 0.00 0.00 0.00 4.44
74 75 7.540299 TGTTGATAGGTTTTGACGAACTTTTT 58.460 30.769 0.00 0.00 0.00 1.94
75 76 7.090953 TGTTGATAGGTTTTGACGAACTTTT 57.909 32.000 0.00 0.00 0.00 2.27
76 77 6.687081 TGTTGATAGGTTTTGACGAACTTT 57.313 33.333 0.00 0.00 0.00 2.66
77 78 6.293955 CCATGTTGATAGGTTTTGACGAACTT 60.294 38.462 0.00 0.00 0.00 2.66
78 79 5.181245 CCATGTTGATAGGTTTTGACGAACT 59.819 40.000 0.00 0.00 0.00 3.01
79 80 5.180492 TCCATGTTGATAGGTTTTGACGAAC 59.820 40.000 0.00 0.00 0.00 3.95
80 81 5.309638 TCCATGTTGATAGGTTTTGACGAA 58.690 37.500 0.00 0.00 0.00 3.85
81 82 4.900684 TCCATGTTGATAGGTTTTGACGA 58.099 39.130 0.00 0.00 0.00 4.20
82 83 5.818136 ATCCATGTTGATAGGTTTTGACG 57.182 39.130 0.00 0.00 0.00 4.35
83 84 7.396540 AGAATCCATGTTGATAGGTTTTGAC 57.603 36.000 0.00 0.00 0.00 3.18
84 85 8.328758 ACTAGAATCCATGTTGATAGGTTTTGA 58.671 33.333 0.00 0.00 0.00 2.69
85 86 8.511604 ACTAGAATCCATGTTGATAGGTTTTG 57.488 34.615 0.00 0.00 0.00 2.44
86 87 9.533831 AAACTAGAATCCATGTTGATAGGTTTT 57.466 29.630 0.00 0.00 0.00 2.43
87 88 9.533831 AAAACTAGAATCCATGTTGATAGGTTT 57.466 29.630 0.00 0.00 0.00 3.27
88 89 8.960591 CAAAACTAGAATCCATGTTGATAGGTT 58.039 33.333 0.00 0.00 0.00 3.50
89 90 8.328758 TCAAAACTAGAATCCATGTTGATAGGT 58.671 33.333 0.00 0.00 0.00 3.08
90 91 8.737168 TCAAAACTAGAATCCATGTTGATAGG 57.263 34.615 0.00 0.00 0.00 2.57
92 93 9.958180 TCTTCAAAACTAGAATCCATGTTGATA 57.042 29.630 0.00 0.00 0.00 2.15
93 94 8.868522 TCTTCAAAACTAGAATCCATGTTGAT 57.131 30.769 0.00 0.00 0.00 2.57
94 95 8.868522 ATCTTCAAAACTAGAATCCATGTTGA 57.131 30.769 0.00 0.00 0.00 3.18
95 96 8.954350 AGATCTTCAAAACTAGAATCCATGTTG 58.046 33.333 0.00 0.00 0.00 3.33
96 97 9.171877 GAGATCTTCAAAACTAGAATCCATGTT 57.828 33.333 0.00 0.00 0.00 2.71
97 98 7.493971 CGAGATCTTCAAAACTAGAATCCATGT 59.506 37.037 0.00 0.00 0.00 3.21
98 99 7.708322 TCGAGATCTTCAAAACTAGAATCCATG 59.292 37.037 0.00 0.00 0.00 3.66
99 100 7.708752 GTCGAGATCTTCAAAACTAGAATCCAT 59.291 37.037 0.00 0.00 0.00 3.41
100 101 7.036220 GTCGAGATCTTCAAAACTAGAATCCA 58.964 38.462 0.00 0.00 0.00 3.41
101 102 6.197468 CGTCGAGATCTTCAAAACTAGAATCC 59.803 42.308 0.00 0.00 0.00 3.01
102 103 6.291374 GCGTCGAGATCTTCAAAACTAGAATC 60.291 42.308 0.00 0.00 0.00 2.52
103 104 5.517054 GCGTCGAGATCTTCAAAACTAGAAT 59.483 40.000 0.00 0.00 0.00 2.40
104 105 4.857588 GCGTCGAGATCTTCAAAACTAGAA 59.142 41.667 0.00 0.00 0.00 2.10
105 106 4.413087 GCGTCGAGATCTTCAAAACTAGA 58.587 43.478 0.00 0.00 0.00 2.43
106 107 3.238570 CGCGTCGAGATCTTCAAAACTAG 59.761 47.826 0.00 0.00 0.00 2.57
107 108 3.120095 TCGCGTCGAGATCTTCAAAACTA 60.120 43.478 5.77 0.00 0.00 2.24
108 109 1.986378 CGCGTCGAGATCTTCAAAACT 59.014 47.619 0.00 0.00 0.00 2.66
109 110 1.983605 TCGCGTCGAGATCTTCAAAAC 59.016 47.619 5.77 0.00 0.00 2.43
110 111 2.341318 TCGCGTCGAGATCTTCAAAA 57.659 45.000 5.77 0.00 0.00 2.44
121 122 1.153901 GTTGGATTCCTCGCGTCGA 60.154 57.895 5.77 0.00 0.00 4.20
122 123 2.505498 CGTTGGATTCCTCGCGTCG 61.505 63.158 5.77 0.00 0.00 5.12
123 124 2.165301 CCGTTGGATTCCTCGCGTC 61.165 63.158 5.77 0.00 0.00 5.19
124 125 2.125673 CCGTTGGATTCCTCGCGT 60.126 61.111 5.77 0.00 0.00 6.01
125 126 2.125673 ACCGTTGGATTCCTCGCG 60.126 61.111 0.00 0.00 0.00 5.87
126 127 0.672401 TTCACCGTTGGATTCCTCGC 60.672 55.000 3.95 0.00 0.00 5.03
127 128 1.803334 TTTCACCGTTGGATTCCTCG 58.197 50.000 3.95 8.76 0.00 4.63
128 129 2.095919 CGTTTTCACCGTTGGATTCCTC 60.096 50.000 3.95 0.00 0.00 3.71
129 130 1.877443 CGTTTTCACCGTTGGATTCCT 59.123 47.619 3.95 0.00 0.00 3.36
130 131 1.605232 ACGTTTTCACCGTTGGATTCC 59.395 47.619 0.00 0.00 34.28 3.01
131 132 3.343380 AACGTTTTCACCGTTGGATTC 57.657 42.857 0.00 0.00 45.89 2.52
132 133 3.697982 GAAACGTTTTCACCGTTGGATT 58.302 40.909 15.89 0.00 46.85 3.01
133 134 2.286536 CGAAACGTTTTCACCGTTGGAT 60.287 45.455 15.89 0.00 46.85 3.41
134 135 1.062294 CGAAACGTTTTCACCGTTGGA 59.938 47.619 15.89 0.00 46.85 3.53
135 136 1.062294 TCGAAACGTTTTCACCGTTGG 59.938 47.619 15.89 0.00 46.85 3.77
136 137 2.029486 TCTCGAAACGTTTTCACCGTTG 59.971 45.455 15.89 10.91 46.85 4.10
138 139 1.925229 TCTCGAAACGTTTTCACCGT 58.075 45.000 15.89 0.00 40.92 4.83
139 140 3.515071 AATCTCGAAACGTTTTCACCG 57.485 42.857 15.89 13.74 0.00 4.94
140 141 3.972502 CCAAATCTCGAAACGTTTTCACC 59.027 43.478 15.89 0.95 0.00 4.02
141 142 4.669283 GTCCAAATCTCGAAACGTTTTCAC 59.331 41.667 15.89 1.34 0.00 3.18
142 143 4.333095 TGTCCAAATCTCGAAACGTTTTCA 59.667 37.500 15.89 3.88 0.00 2.69
143 144 4.669283 GTGTCCAAATCTCGAAACGTTTTC 59.331 41.667 15.89 7.60 0.00 2.29
144 145 4.095185 TGTGTCCAAATCTCGAAACGTTTT 59.905 37.500 15.89 0.00 0.00 2.43
145 146 3.623960 TGTGTCCAAATCTCGAAACGTTT 59.376 39.130 14.57 14.57 0.00 3.60
146 147 3.001939 GTGTGTCCAAATCTCGAAACGTT 59.998 43.478 0.00 0.00 0.00 3.99
147 148 2.542595 GTGTGTCCAAATCTCGAAACGT 59.457 45.455 0.00 0.00 0.00 3.99
148 149 2.409752 CGTGTGTCCAAATCTCGAAACG 60.410 50.000 0.00 0.00 0.00 3.60
149 150 2.542595 ACGTGTGTCCAAATCTCGAAAC 59.457 45.455 0.00 0.00 0.00 2.78
150 151 2.828877 ACGTGTGTCCAAATCTCGAAA 58.171 42.857 0.00 0.00 0.00 3.46
151 152 2.519377 ACGTGTGTCCAAATCTCGAA 57.481 45.000 0.00 0.00 0.00 3.71
152 153 2.519377 AACGTGTGTCCAAATCTCGA 57.481 45.000 0.00 0.00 0.00 4.04
153 154 3.602390 AAAACGTGTGTCCAAATCTCG 57.398 42.857 0.00 0.00 0.00 4.04
154 155 6.202188 TCTCTTAAAACGTGTGTCCAAATCTC 59.798 38.462 0.00 0.00 0.00 2.75
155 156 6.053005 TCTCTTAAAACGTGTGTCCAAATCT 58.947 36.000 0.00 0.00 0.00 2.40
156 157 6.295039 TCTCTTAAAACGTGTGTCCAAATC 57.705 37.500 0.00 0.00 0.00 2.17
157 158 6.877611 ATCTCTTAAAACGTGTGTCCAAAT 57.122 33.333 0.00 0.00 0.00 2.32
158 159 7.789273 TTATCTCTTAAAACGTGTGTCCAAA 57.211 32.000 0.00 0.00 0.00 3.28
159 160 7.789273 TTTATCTCTTAAAACGTGTGTCCAA 57.211 32.000 0.00 0.00 0.00 3.53
160 161 7.632721 GTTTTATCTCTTAAAACGTGTGTCCA 58.367 34.615 0.00 0.00 45.73 4.02
209 210 6.605471 ACAACCTGAGAGTTTTTCCTTTTT 57.395 33.333 0.00 0.00 0.00 1.94
210 211 5.163652 CGACAACCTGAGAGTTTTTCCTTTT 60.164 40.000 0.00 0.00 0.00 2.27
211 212 4.335594 CGACAACCTGAGAGTTTTTCCTTT 59.664 41.667 0.00 0.00 0.00 3.11
212 213 3.877508 CGACAACCTGAGAGTTTTTCCTT 59.122 43.478 0.00 0.00 0.00 3.36
213 214 3.467803 CGACAACCTGAGAGTTTTTCCT 58.532 45.455 0.00 0.00 0.00 3.36
214 215 2.031944 GCGACAACCTGAGAGTTTTTCC 60.032 50.000 0.00 0.00 0.00 3.13
215 216 2.348591 CGCGACAACCTGAGAGTTTTTC 60.349 50.000 0.00 0.00 0.00 2.29
216 217 1.597663 CGCGACAACCTGAGAGTTTTT 59.402 47.619 0.00 0.00 0.00 1.94
217 218 1.202486 TCGCGACAACCTGAGAGTTTT 60.202 47.619 3.71 0.00 0.00 2.43
218 219 0.387929 TCGCGACAACCTGAGAGTTT 59.612 50.000 3.71 0.00 0.00 2.66
219 220 0.318784 GTCGCGACAACCTGAGAGTT 60.319 55.000 33.09 0.00 0.00 3.01
220 221 1.286260 GTCGCGACAACCTGAGAGT 59.714 57.895 33.09 0.00 0.00 3.24
221 222 1.444553 GGTCGCGACAACCTGAGAG 60.445 63.158 37.26 0.00 33.78 3.20
222 223 1.901948 AGGTCGCGACAACCTGAGA 60.902 57.895 37.26 0.00 45.50 3.27
223 224 2.651361 AGGTCGCGACAACCTGAG 59.349 61.111 37.26 0.00 45.50 3.35
227 228 3.524648 TTCCCAGGTCGCGACAACC 62.525 63.158 37.26 23.25 37.03 3.77
228 229 2.027625 CTTCCCAGGTCGCGACAAC 61.028 63.158 37.26 22.72 0.00 3.32
229 230 2.342279 CTTCCCAGGTCGCGACAA 59.658 61.111 37.26 22.53 0.00 3.18
230 231 3.691342 CCTTCCCAGGTCGCGACA 61.691 66.667 37.26 16.71 35.06 4.35
239 240 0.474184 AGAACACACCACCTTCCCAG 59.526 55.000 0.00 0.00 0.00 4.45
240 241 0.923358 AAGAACACACCACCTTCCCA 59.077 50.000 0.00 0.00 0.00 4.37
241 242 1.681264 CAAAGAACACACCACCTTCCC 59.319 52.381 0.00 0.00 0.00 3.97
242 243 1.067060 GCAAAGAACACACCACCTTCC 59.933 52.381 0.00 0.00 0.00 3.46
243 244 1.748493 TGCAAAGAACACACCACCTTC 59.252 47.619 0.00 0.00 0.00 3.46
244 245 1.846007 TGCAAAGAACACACCACCTT 58.154 45.000 0.00 0.00 0.00 3.50
245 246 1.476488 GTTGCAAAGAACACACCACCT 59.524 47.619 0.00 0.00 0.00 4.00
246 247 1.797348 CGTTGCAAAGAACACACCACC 60.797 52.381 6.52 0.00 0.00 4.61
247 248 1.131504 TCGTTGCAAAGAACACACCAC 59.868 47.619 12.88 0.00 0.00 4.16
248 249 1.400142 CTCGTTGCAAAGAACACACCA 59.600 47.619 15.91 0.00 0.00 4.17
249 250 1.400494 ACTCGTTGCAAAGAACACACC 59.600 47.619 15.91 0.00 0.00 4.16
250 251 2.825086 ACTCGTTGCAAAGAACACAC 57.175 45.000 15.91 0.00 0.00 3.82
251 252 3.527533 AGTACTCGTTGCAAAGAACACA 58.472 40.909 15.91 0.00 0.00 3.72
252 253 3.059800 GGAGTACTCGTTGCAAAGAACAC 60.060 47.826 15.91 14.96 0.00 3.32
253 254 3.128349 GGAGTACTCGTTGCAAAGAACA 58.872 45.455 15.91 4.24 0.00 3.18
254 255 3.391049 AGGAGTACTCGTTGCAAAGAAC 58.609 45.455 15.91 11.95 0.00 3.01
255 256 3.746045 AGGAGTACTCGTTGCAAAGAA 57.254 42.857 15.91 0.00 0.00 2.52
256 257 3.746045 AAGGAGTACTCGTTGCAAAGA 57.254 42.857 25.72 14.45 36.47 2.52
257 258 6.481954 AATTAAGGAGTACTCGTTGCAAAG 57.518 37.500 31.33 2.46 38.07 2.77
258 259 7.117236 CACTAATTAAGGAGTACTCGTTGCAAA 59.883 37.037 31.33 21.62 38.07 3.68
259 260 6.588756 CACTAATTAAGGAGTACTCGTTGCAA 59.411 38.462 31.33 22.18 38.07 4.08
260 261 6.071784 TCACTAATTAAGGAGTACTCGTTGCA 60.072 38.462 31.33 21.45 38.07 4.08
261 262 6.327934 TCACTAATTAAGGAGTACTCGTTGC 58.672 40.000 31.33 13.49 38.07 4.17
262 263 8.928270 AATCACTAATTAAGGAGTACTCGTTG 57.072 34.615 31.33 20.36 38.07 4.10
263 264 9.583765 GAAATCACTAATTAAGGAGTACTCGTT 57.416 33.333 28.20 28.20 40.33 3.85
264 265 7.914346 CGAAATCACTAATTAAGGAGTACTCGT 59.086 37.037 16.56 14.43 0.00 4.18
265 266 7.096558 GCGAAATCACTAATTAAGGAGTACTCG 60.097 40.741 16.56 2.92 0.00 4.18
266 267 7.921745 AGCGAAATCACTAATTAAGGAGTACTC 59.078 37.037 14.87 14.87 0.00 2.59
267 268 7.707035 CAGCGAAATCACTAATTAAGGAGTACT 59.293 37.037 0.00 0.00 0.00 2.73
268 269 7.705325 TCAGCGAAATCACTAATTAAGGAGTAC 59.295 37.037 0.00 0.00 0.00 2.73
269 270 7.778083 TCAGCGAAATCACTAATTAAGGAGTA 58.222 34.615 0.00 0.00 0.00 2.59
270 271 6.640518 TCAGCGAAATCACTAATTAAGGAGT 58.359 36.000 0.00 0.00 0.00 3.85
271 272 7.721286 ATCAGCGAAATCACTAATTAAGGAG 57.279 36.000 0.00 0.00 0.00 3.69
272 273 8.397906 CAAATCAGCGAAATCACTAATTAAGGA 58.602 33.333 0.00 0.00 0.00 3.36
273 274 7.166473 GCAAATCAGCGAAATCACTAATTAAGG 59.834 37.037 0.00 0.00 0.00 2.69
274 275 7.697710 TGCAAATCAGCGAAATCACTAATTAAG 59.302 33.333 0.00 0.00 37.31 1.85
275 276 7.534282 TGCAAATCAGCGAAATCACTAATTAA 58.466 30.769 0.00 0.00 37.31 1.40
276 277 7.082700 TGCAAATCAGCGAAATCACTAATTA 57.917 32.000 0.00 0.00 37.31 1.40
277 278 5.953183 TGCAAATCAGCGAAATCACTAATT 58.047 33.333 0.00 0.00 37.31 1.40
278 279 5.124457 ACTGCAAATCAGCGAAATCACTAAT 59.876 36.000 0.00 0.00 46.76 1.73
279 280 4.455533 ACTGCAAATCAGCGAAATCACTAA 59.544 37.500 0.00 0.00 46.76 2.24
280 281 4.002982 ACTGCAAATCAGCGAAATCACTA 58.997 39.130 0.00 0.00 46.76 2.74
281 282 2.816087 ACTGCAAATCAGCGAAATCACT 59.184 40.909 0.00 0.00 46.76 3.41
282 283 2.912967 CACTGCAAATCAGCGAAATCAC 59.087 45.455 0.00 0.00 46.76 3.06
283 284 2.669113 GCACTGCAAATCAGCGAAATCA 60.669 45.455 0.00 0.00 46.76 2.57
284 285 1.916000 GCACTGCAAATCAGCGAAATC 59.084 47.619 0.00 0.00 46.76 2.17
285 286 1.986698 GCACTGCAAATCAGCGAAAT 58.013 45.000 0.00 0.00 46.76 2.17
286 287 3.477504 GCACTGCAAATCAGCGAAA 57.522 47.368 0.00 0.00 46.76 3.46
289 290 2.872925 GCGCACTGCAAATCAGCG 60.873 61.111 0.30 11.82 46.76 5.18
291 292 3.339994 AAGTGGCGCACTGCAAATCAG 62.340 52.381 10.83 0.00 44.62 2.90
292 293 1.454572 AAGTGGCGCACTGCAAATCA 61.455 50.000 10.83 0.00 44.62 2.57
293 294 1.005294 CAAGTGGCGCACTGCAAATC 61.005 55.000 10.83 0.00 44.62 2.17
294 295 1.007038 CAAGTGGCGCACTGCAAAT 60.007 52.632 10.83 0.00 44.62 2.32
295 296 2.335052 GACAAGTGGCGCACTGCAAA 62.335 55.000 10.83 0.00 44.62 3.68
296 297 2.828095 ACAAGTGGCGCACTGCAA 60.828 55.556 10.83 0.00 44.62 4.08
297 298 3.279116 GACAAGTGGCGCACTGCA 61.279 61.111 10.83 0.00 44.62 4.41
298 299 4.374702 CGACAAGTGGCGCACTGC 62.375 66.667 10.83 4.09 44.62 4.40
305 306 3.414700 CAGGTCGCGACAAGTGGC 61.415 66.667 37.26 20.56 0.00 5.01
306 307 1.734477 CTCAGGTCGCGACAAGTGG 60.734 63.158 37.26 21.60 0.00 4.00
307 308 0.318699 TTCTCAGGTCGCGACAAGTG 60.319 55.000 37.26 29.08 0.00 3.16
308 309 0.039074 CTTCTCAGGTCGCGACAAGT 60.039 55.000 37.26 20.42 0.00 3.16
309 310 0.734253 CCTTCTCAGGTCGCGACAAG 60.734 60.000 37.26 29.03 35.06 3.16
310 311 1.289066 CCTTCTCAGGTCGCGACAA 59.711 57.895 37.26 22.53 35.06 3.18
311 312 2.962569 CCTTCTCAGGTCGCGACA 59.037 61.111 37.26 18.77 35.06 4.35
320 321 3.760580 AAGAACACTCCACCTTCTCAG 57.239 47.619 0.00 0.00 0.00 3.35
321 322 3.808728 CAAAGAACACTCCACCTTCTCA 58.191 45.455 0.00 0.00 0.00 3.27
322 323 2.550180 GCAAAGAACACTCCACCTTCTC 59.450 50.000 0.00 0.00 0.00 2.87
323 324 2.092429 TGCAAAGAACACTCCACCTTCT 60.092 45.455 0.00 0.00 0.00 2.85
324 325 2.297701 TGCAAAGAACACTCCACCTTC 58.702 47.619 0.00 0.00 0.00 3.46
325 326 2.427095 GTTGCAAAGAACACTCCACCTT 59.573 45.455 0.00 0.00 0.00 3.50
326 327 2.024414 GTTGCAAAGAACACTCCACCT 58.976 47.619 0.00 0.00 0.00 4.00
327 328 1.268539 CGTTGCAAAGAACACTCCACC 60.269 52.381 6.52 0.00 0.00 4.61
328 329 1.668751 TCGTTGCAAAGAACACTCCAC 59.331 47.619 12.88 0.00 0.00 4.02
329 330 1.939934 CTCGTTGCAAAGAACACTCCA 59.060 47.619 15.91 0.00 0.00 3.86
330 331 1.940613 ACTCGTTGCAAAGAACACTCC 59.059 47.619 15.91 0.00 0.00 3.85
331 332 3.802685 AGTACTCGTTGCAAAGAACACTC 59.197 43.478 15.91 5.78 0.00 3.51
332 333 3.793559 AGTACTCGTTGCAAAGAACACT 58.206 40.909 15.91 16.69 0.00 3.55
333 334 3.059800 GGAGTACTCGTTGCAAAGAACAC 60.060 47.826 15.91 14.96 0.00 3.32
334 335 3.128349 GGAGTACTCGTTGCAAAGAACA 58.872 45.455 15.91 4.24 0.00 3.18
335 336 3.391049 AGGAGTACTCGTTGCAAAGAAC 58.609 45.455 15.91 11.95 0.00 3.01
336 337 3.746045 AGGAGTACTCGTTGCAAAGAA 57.254 42.857 15.91 0.00 0.00 2.52
337 338 3.746045 AAGGAGTACTCGTTGCAAAGA 57.254 42.857 25.72 14.45 36.47 2.52
338 339 6.481954 AATTAAGGAGTACTCGTTGCAAAG 57.518 37.500 31.33 2.46 38.07 2.77
339 340 7.117236 CACTAATTAAGGAGTACTCGTTGCAAA 59.883 37.037 31.33 21.62 38.07 3.68
340 341 6.588756 CACTAATTAAGGAGTACTCGTTGCAA 59.411 38.462 31.33 22.18 38.07 4.08
341 342 6.071784 TCACTAATTAAGGAGTACTCGTTGCA 60.072 38.462 31.33 21.45 38.07 4.08
342 343 6.327934 TCACTAATTAAGGAGTACTCGTTGC 58.672 40.000 31.33 13.49 38.07 4.17
343 344 8.928270 AATCACTAATTAAGGAGTACTCGTTG 57.072 34.615 31.33 20.36 38.07 4.10
344 345 9.583765 GAAATCACTAATTAAGGAGTACTCGTT 57.416 33.333 28.20 28.20 40.33 3.85
345 346 7.914346 CGAAATCACTAATTAAGGAGTACTCGT 59.086 37.037 16.56 14.43 0.00 4.18
346 347 7.096558 GCGAAATCACTAATTAAGGAGTACTCG 60.097 40.741 16.56 2.92 0.00 4.18
347 348 7.921745 AGCGAAATCACTAATTAAGGAGTACTC 59.078 37.037 14.87 14.87 0.00 2.59
348 349 7.783042 AGCGAAATCACTAATTAAGGAGTACT 58.217 34.615 0.00 0.00 0.00 2.73
349 350 7.705325 TGAGCGAAATCACTAATTAAGGAGTAC 59.295 37.037 0.00 0.00 0.00 2.73
350 351 7.778083 TGAGCGAAATCACTAATTAAGGAGTA 58.222 34.615 0.00 0.00 0.00 2.59
351 352 6.640518 TGAGCGAAATCACTAATTAAGGAGT 58.359 36.000 0.00 0.00 0.00 3.85
352 353 7.721286 ATGAGCGAAATCACTAATTAAGGAG 57.279 36.000 0.00 0.00 30.46 3.69
353 354 8.506168 AAATGAGCGAAATCACTAATTAAGGA 57.494 30.769 0.00 0.00 30.46 3.36
354 355 9.226345 GAAAATGAGCGAAATCACTAATTAAGG 57.774 33.333 0.00 0.00 30.46 2.69
355 356 9.773328 TGAAAATGAGCGAAATCACTAATTAAG 57.227 29.630 0.00 0.00 30.46 1.85
357 358 9.773328 CTTGAAAATGAGCGAAATCACTAATTA 57.227 29.630 0.00 0.00 30.46 1.40
358 359 7.756722 CCTTGAAAATGAGCGAAATCACTAATT 59.243 33.333 0.00 0.00 30.46 1.40
359 360 7.253422 CCTTGAAAATGAGCGAAATCACTAAT 58.747 34.615 0.00 0.00 30.46 1.73
360 361 6.349280 CCCTTGAAAATGAGCGAAATCACTAA 60.349 38.462 0.00 0.00 30.46 2.24
361 362 5.123820 CCCTTGAAAATGAGCGAAATCACTA 59.876 40.000 0.00 0.00 30.46 2.74
362 363 4.082571 CCCTTGAAAATGAGCGAAATCACT 60.083 41.667 0.00 0.00 30.46 3.41
363 364 4.168760 CCCTTGAAAATGAGCGAAATCAC 58.831 43.478 0.00 0.00 30.46 3.06
364 365 3.193267 CCCCTTGAAAATGAGCGAAATCA 59.807 43.478 0.00 0.00 0.00 2.57
365 366 3.429410 CCCCCTTGAAAATGAGCGAAATC 60.429 47.826 0.00 0.00 0.00 2.17
366 367 2.497273 CCCCCTTGAAAATGAGCGAAAT 59.503 45.455 0.00 0.00 0.00 2.17
367 368 1.892474 CCCCCTTGAAAATGAGCGAAA 59.108 47.619 0.00 0.00 0.00 3.46
368 369 1.203001 ACCCCCTTGAAAATGAGCGAA 60.203 47.619 0.00 0.00 0.00 4.70
369 370 0.404040 ACCCCCTTGAAAATGAGCGA 59.596 50.000 0.00 0.00 0.00 4.93
370 371 0.527565 CACCCCCTTGAAAATGAGCG 59.472 55.000 0.00 0.00 0.00 5.03
371 372 1.273327 CACACCCCCTTGAAAATGAGC 59.727 52.381 0.00 0.00 0.00 4.26
372 373 1.895131 CCACACCCCCTTGAAAATGAG 59.105 52.381 0.00 0.00 0.00 2.90
373 374 1.482177 CCCACACCCCCTTGAAAATGA 60.482 52.381 0.00 0.00 0.00 2.57
374 375 0.975887 CCCACACCCCCTTGAAAATG 59.024 55.000 0.00 0.00 0.00 2.32
375 376 0.835971 GCCCACACCCCCTTGAAAAT 60.836 55.000 0.00 0.00 0.00 1.82
376 377 1.458588 GCCCACACCCCCTTGAAAA 60.459 57.895 0.00 0.00 0.00 2.29
377 378 2.200092 GCCCACACCCCCTTGAAA 59.800 61.111 0.00 0.00 0.00 2.69
378 379 3.909651 GGCCCACACCCCCTTGAA 61.910 66.667 0.00 0.00 0.00 2.69
383 384 3.897681 AAAATCGGCCCACACCCCC 62.898 63.158 0.00 0.00 0.00 5.40
384 385 2.283604 AAAATCGGCCCACACCCC 60.284 61.111 0.00 0.00 0.00 4.95
385 386 2.348104 GGAAAATCGGCCCACACCC 61.348 63.158 0.00 0.00 0.00 4.61
386 387 2.348104 GGGAAAATCGGCCCACACC 61.348 63.158 0.00 0.00 44.07 4.16
387 388 3.284336 GGGAAAATCGGCCCACAC 58.716 61.111 0.00 0.00 44.07 3.82
391 392 1.328279 CCATTAGGGAAAATCGGCCC 58.672 55.000 0.00 0.00 45.04 5.80
392 393 0.673985 GCCATTAGGGAAAATCGGCC 59.326 55.000 0.00 0.00 40.01 6.13
393 394 0.673985 GGCCATTAGGGAAAATCGGC 59.326 55.000 0.00 0.00 40.01 5.54
394 395 2.065899 TGGCCATTAGGGAAAATCGG 57.934 50.000 0.00 0.00 40.01 4.18
395 396 3.636300 TGATTGGCCATTAGGGAAAATCG 59.364 43.478 6.09 0.00 40.36 3.34
396 397 5.813513 ATGATTGGCCATTAGGGAAAATC 57.186 39.130 6.09 3.48 40.01 2.17
397 398 7.348011 AGTTTATGATTGGCCATTAGGGAAAAT 59.652 33.333 6.09 0.00 40.01 1.82
398 399 6.671779 AGTTTATGATTGGCCATTAGGGAAAA 59.328 34.615 6.09 0.00 40.01 2.29
399 400 6.098124 CAGTTTATGATTGGCCATTAGGGAAA 59.902 38.462 6.09 0.34 40.01 3.13
400 401 5.598005 CAGTTTATGATTGGCCATTAGGGAA 59.402 40.000 6.09 0.00 40.01 3.97
401 402 5.139727 CAGTTTATGATTGGCCATTAGGGA 58.860 41.667 6.09 0.00 40.01 4.20
402 403 4.262164 GCAGTTTATGATTGGCCATTAGGG 60.262 45.833 6.09 0.00 40.85 3.53
403 404 4.262164 GGCAGTTTATGATTGGCCATTAGG 60.262 45.833 6.09 0.00 41.02 2.69
404 405 4.341806 TGGCAGTTTATGATTGGCCATTAG 59.658 41.667 6.09 0.00 45.69 1.73
405 406 4.285020 TGGCAGTTTATGATTGGCCATTA 58.715 39.130 6.09 0.00 45.69 1.90
406 407 3.106054 TGGCAGTTTATGATTGGCCATT 58.894 40.909 6.09 1.72 45.69 3.16
407 408 2.749600 TGGCAGTTTATGATTGGCCAT 58.250 42.857 6.09 0.00 45.69 4.40
409 410 2.497273 AGTTGGCAGTTTATGATTGGCC 59.503 45.455 0.00 0.00 41.70 5.36
410 411 3.514645 CAGTTGGCAGTTTATGATTGGC 58.485 45.455 0.00 0.00 37.84 4.52
411 412 3.763360 TCCAGTTGGCAGTTTATGATTGG 59.237 43.478 0.00 0.00 34.44 3.16
412 413 5.125900 TGATCCAGTTGGCAGTTTATGATTG 59.874 40.000 0.00 0.00 34.44 2.67
413 414 5.263599 TGATCCAGTTGGCAGTTTATGATT 58.736 37.500 0.00 0.00 34.44 2.57
414 415 4.858850 TGATCCAGTTGGCAGTTTATGAT 58.141 39.130 0.00 0.00 34.44 2.45
415 416 4.299586 TGATCCAGTTGGCAGTTTATGA 57.700 40.909 0.00 0.00 34.44 2.15
416 417 5.450965 GGATTGATCCAGTTGGCAGTTTATG 60.451 44.000 5.14 0.00 46.38 1.90
417 418 4.646492 GGATTGATCCAGTTGGCAGTTTAT 59.354 41.667 5.14 0.00 46.38 1.40
418 419 4.016444 GGATTGATCCAGTTGGCAGTTTA 58.984 43.478 5.14 0.00 46.38 2.01
419 420 2.827921 GGATTGATCCAGTTGGCAGTTT 59.172 45.455 5.14 0.00 46.38 2.66
420 421 2.450476 GGATTGATCCAGTTGGCAGTT 58.550 47.619 5.14 0.00 46.38 3.16
421 422 2.134789 GGATTGATCCAGTTGGCAGT 57.865 50.000 5.14 0.00 46.38 4.40
431 432 2.552373 GGGTCATTACGGGGATTGATCC 60.552 54.545 1.21 1.21 46.41 3.36
432 433 2.552373 GGGGTCATTACGGGGATTGATC 60.552 54.545 0.00 0.00 0.00 2.92
433 434 1.423921 GGGGTCATTACGGGGATTGAT 59.576 52.381 0.00 0.00 0.00 2.57
434 435 0.841289 GGGGTCATTACGGGGATTGA 59.159 55.000 0.00 0.00 0.00 2.57
435 436 0.534203 CGGGGTCATTACGGGGATTG 60.534 60.000 0.00 0.00 0.00 2.67
436 437 0.984432 ACGGGGTCATTACGGGGATT 60.984 55.000 0.00 0.00 0.00 3.01
437 438 0.105555 TACGGGGTCATTACGGGGAT 60.106 55.000 0.00 0.00 0.00 3.85
438 439 0.105555 ATACGGGGTCATTACGGGGA 60.106 55.000 0.00 0.00 0.00 4.81
439 440 0.760572 AATACGGGGTCATTACGGGG 59.239 55.000 0.00 0.00 0.00 5.73
440 441 2.611224 GCTAATACGGGGTCATTACGGG 60.611 54.545 0.00 0.00 0.00 5.28
441 442 2.611224 GGCTAATACGGGGTCATTACGG 60.611 54.545 0.00 0.00 0.00 4.02
442 443 2.611224 GGGCTAATACGGGGTCATTACG 60.611 54.545 0.00 0.00 0.00 3.18
443 444 2.611224 CGGGCTAATACGGGGTCATTAC 60.611 54.545 0.00 0.00 0.00 1.89
444 445 1.619827 CGGGCTAATACGGGGTCATTA 59.380 52.381 0.00 0.00 0.00 1.90
445 446 0.395312 CGGGCTAATACGGGGTCATT 59.605 55.000 0.00 0.00 0.00 2.57
446 447 0.761702 ACGGGCTAATACGGGGTCAT 60.762 55.000 0.00 0.00 0.00 3.06
447 448 1.381599 ACGGGCTAATACGGGGTCA 60.382 57.895 0.00 0.00 0.00 4.02
448 449 1.068585 CACGGGCTAATACGGGGTC 59.931 63.158 0.00 0.00 0.00 4.46
449 450 1.686800 ACACGGGCTAATACGGGGT 60.687 57.895 0.00 0.00 37.93 4.95
450 451 1.227438 CACACGGGCTAATACGGGG 60.227 63.158 0.00 0.00 37.93 5.73
451 452 0.808453 CACACACGGGCTAATACGGG 60.808 60.000 0.00 0.00 39.87 5.28
452 453 0.108520 ACACACACGGGCTAATACGG 60.109 55.000 0.00 0.00 0.00 4.02
453 454 2.456989 CTACACACACGGGCTAATACG 58.543 52.381 0.00 0.00 0.00 3.06
454 455 2.199236 GCTACACACACGGGCTAATAC 58.801 52.381 0.00 0.00 0.00 1.89
455 456 1.826096 TGCTACACACACGGGCTAATA 59.174 47.619 0.00 0.00 0.00 0.98
456 457 0.611200 TGCTACACACACGGGCTAAT 59.389 50.000 0.00 0.00 0.00 1.73
457 458 0.611200 ATGCTACACACACGGGCTAA 59.389 50.000 0.00 0.00 0.00 3.09
458 459 0.611200 AATGCTACACACACGGGCTA 59.389 50.000 0.00 0.00 0.00 3.93
459 460 0.955428 CAATGCTACACACACGGGCT 60.955 55.000 0.00 0.00 0.00 5.19
460 461 1.501741 CAATGCTACACACACGGGC 59.498 57.895 0.00 0.00 0.00 6.13
461 462 1.501741 GCAATGCTACACACACGGG 59.498 57.895 0.00 0.00 0.00 5.28
462 463 1.501741 GGCAATGCTACACACACGG 59.498 57.895 4.82 0.00 0.00 4.94
463 464 1.132436 CGGCAATGCTACACACACG 59.868 57.895 4.82 0.00 0.00 4.49
464 465 1.234615 ACCGGCAATGCTACACACAC 61.235 55.000 4.82 0.00 0.00 3.82
465 466 1.072332 ACCGGCAATGCTACACACA 59.928 52.632 4.82 0.00 0.00 3.72
466 467 1.501741 CACCGGCAATGCTACACAC 59.498 57.895 4.82 0.00 0.00 3.82
467 468 2.331893 GCACCGGCAATGCTACACA 61.332 57.895 4.82 0.00 40.08 3.72
468 469 2.485122 GCACCGGCAATGCTACAC 59.515 61.111 4.82 0.00 40.08 2.90
473 474 3.332493 CTCACAGCACCGGCAATGC 62.332 63.158 0.00 3.86 44.61 3.56
474 475 0.673333 TACTCACAGCACCGGCAATG 60.673 55.000 0.00 0.00 44.61 2.82
475 476 0.673644 GTACTCACAGCACCGGCAAT 60.674 55.000 0.00 0.00 44.61 3.56
476 477 1.301401 GTACTCACAGCACCGGCAA 60.301 57.895 0.00 0.00 44.61 4.52
477 478 1.826340 ATGTACTCACAGCACCGGCA 61.826 55.000 0.00 0.00 44.61 5.69
478 479 1.079127 ATGTACTCACAGCACCGGC 60.079 57.895 0.00 0.00 38.30 6.13
479 480 1.361668 GCATGTACTCACAGCACCGG 61.362 60.000 0.00 0.00 38.30 5.28
480 481 0.670239 TGCATGTACTCACAGCACCG 60.670 55.000 0.00 0.00 38.30 4.94
481 482 0.798776 GTGCATGTACTCACAGCACC 59.201 55.000 6.69 4.79 44.81 5.01
483 484 2.671070 CGTAGTGCATGTACTCACAGCA 60.671 50.000 20.38 0.00 38.30 4.41
484 485 1.920574 CGTAGTGCATGTACTCACAGC 59.079 52.381 20.38 6.11 38.30 4.40
485 486 1.920574 GCGTAGTGCATGTACTCACAG 59.079 52.381 20.38 10.84 45.45 3.66
486 487 1.731098 CGCGTAGTGCATGTACTCACA 60.731 52.381 20.38 0.00 46.97 3.58
487 488 0.914551 CGCGTAGTGCATGTACTCAC 59.085 55.000 20.38 14.56 46.97 3.51
488 489 3.322526 CGCGTAGTGCATGTACTCA 57.677 52.632 20.38 4.53 46.97 3.41
645 650 1.956477 GAGTTGGTTCCATGTGCACTT 59.044 47.619 19.41 9.21 0.00 3.16
687 692 2.027751 GATAGCGGCAGGTCGTCC 59.972 66.667 1.45 0.00 0.00 4.79
732 737 5.296780 CAGGTTAAAAAGCTCAACTGTCTGA 59.703 40.000 0.00 0.00 37.06 3.27
740 745 3.322191 ACCCCAGGTTAAAAAGCTCAA 57.678 42.857 0.00 0.00 37.06 3.02
746 751 3.451540 GGTTGTCAACCCCAGGTTAAAAA 59.548 43.478 22.30 0.00 45.01 1.94
809 814 1.395045 TATCTGAGGCGCAGGAGTGG 61.395 60.000 18.30 0.00 44.98 4.00
810 815 0.031857 CTATCTGAGGCGCAGGAGTG 59.968 60.000 18.30 3.16 44.98 3.51
811 816 0.396417 ACTATCTGAGGCGCAGGAGT 60.396 55.000 18.30 17.36 44.98 3.85
820 831 5.394005 CCAGTTTCAGTCTGACTATCTGAGG 60.394 48.000 21.03 13.05 39.00 3.86
902 913 0.872021 CTCGGCGTTGGAGTCTATGC 60.872 60.000 6.85 0.00 0.00 3.14
914 925 4.926207 GGGTAAATCACTCGGCGT 57.074 55.556 6.85 0.00 0.00 5.68
957 969 2.097038 CAGAGCGCGAACAGAAGGG 61.097 63.158 12.10 0.00 0.00 3.95
1017 1029 1.668867 GAGGAGGAGCCGGATAAGC 59.331 63.158 5.05 0.00 43.43 3.09
1695 1707 0.618458 TGGTGTGGGTAATGGAGCTC 59.382 55.000 4.71 4.71 0.00 4.09
1722 1734 3.186047 GGGATGACGGTTGCGACG 61.186 66.667 0.00 0.00 37.36 5.12
1764 1776 1.424493 AAACGAGCAGCGCTATGAGC 61.424 55.000 10.99 9.96 46.04 4.26
1810 1822 1.782028 GACAAACCGCGGTTCTTGCT 61.782 55.000 41.09 24.38 37.35 3.91
2643 2661 3.077556 TCCCGAAGCAGAGCCTCC 61.078 66.667 0.00 0.00 0.00 4.30
3037 3055 8.981647 CAATCCATTTACACCAAGAAGAAAAAG 58.018 33.333 0.00 0.00 0.00 2.27
3038 3056 8.482128 ACAATCCATTTACACCAAGAAGAAAAA 58.518 29.630 0.00 0.00 0.00 1.94
3076 3096 5.389859 TCATTTGGTATTTCAGCACAAGG 57.610 39.130 0.00 0.00 33.42 3.61
3093 3113 8.114331 TCAGCATCTTTCTACATGTTTCATTT 57.886 30.769 2.30 0.00 0.00 2.32
3120 3140 9.506018 TCTTGATTTGATGTGAACTTTATCTCA 57.494 29.630 0.00 0.00 0.00 3.27
3167 3191 5.522460 CGGACGGTGAATAGTTTGTAATGAT 59.478 40.000 0.00 0.00 0.00 2.45
3197 3221 0.037590 TTGTTTCCCTGATCACCGGG 59.962 55.000 12.90 12.90 42.05 5.73
3198 3222 1.165270 GTTGTTTCCCTGATCACCGG 58.835 55.000 0.00 0.00 0.00 5.28
3256 3280 1.336755 CTGTAAGTTTGCACCACCACC 59.663 52.381 0.00 0.00 0.00 4.61
3257 3281 2.774439 CTGTAAGTTTGCACCACCAC 57.226 50.000 0.00 0.00 0.00 4.16
3338 3362 4.046938 ACGTAGTAGCTTGATGATGTGG 57.953 45.455 0.00 0.00 41.94 4.17
3465 3489 1.982395 CTAGGCCACCGACTCCACA 60.982 63.158 5.01 0.00 0.00 4.17
3626 3652 3.003689 AGGCTGTCTGTTTTTGTTCATCG 59.996 43.478 0.00 0.00 0.00 3.84
3661 3700 6.909550 TGCATTAGTTGTTACCAAAGGAAT 57.090 33.333 0.00 0.00 30.94 3.01
3708 3747 6.035758 GGCTACAAGTTTACTACACTATGCAC 59.964 42.308 0.00 0.00 0.00 4.57
3715 3754 4.548451 AGGGGCTACAAGTTTACTACAC 57.452 45.455 0.00 0.00 0.00 2.90
3726 3765 0.696485 GTGGGGGATAGGGGCTACAA 60.696 60.000 0.00 0.00 0.00 2.41
3729 3768 1.010602 AGAGTGGGGGATAGGGGCTA 61.011 60.000 0.00 0.00 0.00 3.93
3770 3813 8.498358 CACCTGAATTTTCATTTTAAAAGAGCC 58.502 33.333 6.79 0.00 36.46 4.70
3845 3888 5.368145 TCAACGATCCTTCCATCAATAAGG 58.632 41.667 0.00 0.00 43.11 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.