Multiple sequence alignment - TraesCS3D01G401700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G401700 chr3D 100.000 4111 0 0 1 4111 516381181 516385291 0.000000e+00 7592.0
1 TraesCS3D01G401700 chr3D 89.231 65 6 1 4046 4110 48365628 48365691 3.410000e-11 80.5
2 TraesCS3D01G401700 chr3B 93.574 2381 118 17 1742 4111 679643801 679646157 0.000000e+00 3517.0
3 TraesCS3D01G401700 chr3B 90.129 1550 107 27 225 1748 679642199 679643728 0.000000e+00 1973.0
4 TraesCS3D01G401700 chr3B 87.854 247 24 3 1 241 679641938 679642184 6.730000e-73 285.0
5 TraesCS3D01G401700 chr3A 92.600 1473 85 12 2660 4111 651586779 651588248 0.000000e+00 2095.0
6 TraesCS3D01G401700 chr3A 93.533 835 34 13 1745 2576 651585502 651586319 0.000000e+00 1225.0
7 TraesCS3D01G401700 chr3A 90.653 674 45 8 1 659 651523096 651523766 0.000000e+00 880.0
8 TraesCS3D01G401700 chr3A 94.291 578 28 2 658 1233 651584157 651584731 0.000000e+00 880.0
9 TraesCS3D01G401700 chr3A 94.717 265 14 0 1464 1728 651585145 651585409 2.960000e-111 412.0
10 TraesCS3D01G401700 chr3A 91.905 210 8 7 2454 2661 651586319 651586521 6.730000e-73 285.0
11 TraesCS3D01G401700 chr3A 97.826 138 3 0 1236 1373 651584765 651584902 5.310000e-59 239.0
12 TraesCS3D01G401700 chr3A 91.129 124 7 2 2454 2576 651586259 651586379 9.140000e-37 165.0
13 TraesCS3D01G401700 chr3A 95.604 91 4 0 1373 1463 651585019 651585109 3.310000e-31 147.0
14 TraesCS3D01G401700 chr3A 75.600 250 51 10 351 592 552302266 552302513 9.340000e-22 115.0
15 TraesCS3D01G401700 chr7A 93.548 186 10 2 3880 4065 717067623 717067806 4.050000e-70 276.0
16 TraesCS3D01G401700 chr7A 79.808 104 15 6 519 620 652289432 652289531 2.050000e-08 71.3
17 TraesCS3D01G401700 chr1D 87.958 191 23 0 1000 1190 360386909 360387099 4.130000e-55 226.0
18 TraesCS3D01G401700 chr1D 81.659 229 35 7 19 244 22441131 22441355 2.520000e-42 183.0
19 TraesCS3D01G401700 chr1D 83.432 169 24 4 1001 1167 356932113 356931947 1.980000e-33 154.0
20 TraesCS3D01G401700 chr1D 75.458 273 50 16 323 585 480887812 480887547 2.600000e-22 117.0
21 TraesCS3D01G401700 chr1D 88.732 71 8 0 1622 1692 360387223 360387293 2.040000e-13 87.9
22 TraesCS3D01G401700 chr1A 87.565 193 24 0 998 1190 459946979 459947171 1.490000e-54 224.0
23 TraesCS3D01G401700 chr1A 81.910 199 34 2 42 239 24582023 24582220 2.540000e-37 167.0
24 TraesCS3D01G401700 chr1A 82.738 168 27 2 1001 1167 458220109 458219943 9.210000e-32 148.0
25 TraesCS3D01G401700 chr1A 90.141 71 7 0 1622 1692 459947307 459947377 4.380000e-15 93.5
26 TraesCS3D01G401700 chr1A 78.846 104 19 3 485 586 298557358 298557256 2.650000e-07 67.6
27 TraesCS3D01G401700 chr1B 87.435 191 24 0 1000 1190 482451149 482451339 1.920000e-53 220.0
28 TraesCS3D01G401700 chr1B 82.738 168 27 2 1001 1167 480441460 480441294 9.210000e-32 148.0
29 TraesCS3D01G401700 chr1B 76.557 273 54 10 320 586 616814890 616815158 1.540000e-29 141.0
30 TraesCS3D01G401700 chr1B 91.549 71 6 0 1622 1692 482451449 482451519 9.400000e-17 99.0
31 TraesCS3D01G401700 chr1B 76.410 195 37 6 398 584 297454875 297454682 3.380000e-16 97.1
32 TraesCS3D01G401700 chr1B 75.740 169 36 5 423 586 329344451 329344283 3.410000e-11 80.5
33 TraesCS3D01G401700 chr7D 91.724 145 9 1 3879 4023 621613582 621613723 9.010000e-47 198.0
34 TraesCS3D01G401700 chr6D 76.145 415 75 17 47 443 308931412 308931820 3.240000e-46 196.0
35 TraesCS3D01G401700 chr6D 80.753 239 40 4 6 241 337846649 337846884 9.080000e-42 182.0
36 TraesCS3D01G401700 chr6D 80.476 210 34 3 33 241 34190222 34190019 1.980000e-33 154.0
37 TraesCS3D01G401700 chr6D 78.641 206 34 10 394 592 415033798 415034000 1.200000e-25 128.0
38 TraesCS3D01G401700 chr7B 79.412 272 50 5 320 586 381858633 381858903 1.950000e-43 187.0
39 TraesCS3D01G401700 chr7B 91.509 106 5 2 3879 3984 718445463 718445362 4.280000e-30 143.0
40 TraesCS3D01G401700 chr5D 79.565 230 44 3 14 241 114585599 114585827 1.180000e-35 161.0
41 TraesCS3D01G401700 chr6A 81.159 207 32 3 243 443 588035037 588035242 4.250000e-35 159.0
42 TraesCS3D01G401700 chr6A 90.196 51 5 0 4056 4106 570382352 570382402 2.650000e-07 67.6
43 TraesCS3D01G401700 chr4D 75.562 356 68 13 243 585 7941527 7941178 1.530000e-34 158.0
44 TraesCS3D01G401700 chr4D 78.571 210 34 6 243 444 49916369 49916163 1.200000e-25 128.0
45 TraesCS3D01G401700 chrUn 79.327 208 38 4 43 247 28735480 28735685 1.540000e-29 141.0
46 TraesCS3D01G401700 chr4A 82.796 93 15 1 357 449 35565606 35565515 9.470000e-12 82.4
47 TraesCS3D01G401700 chr2D 86.301 73 10 0 357 429 405059771 405059699 3.410000e-11 80.5
48 TraesCS3D01G401700 chr2D 89.583 48 5 0 4048 4095 492022219 492022266 1.230000e-05 62.1
49 TraesCS3D01G401700 chr2D 83.077 65 11 0 4044 4108 595290118 595290182 4.440000e-05 60.2
50 TraesCS3D01G401700 chr4B 77.519 129 22 3 266 388 103057930 103058057 2.050000e-08 71.3
51 TraesCS3D01G401700 chr2A 89.583 48 5 0 4048 4095 637222648 637222695 1.230000e-05 62.1
52 TraesCS3D01G401700 chr2A 83.077 65 11 0 4044 4108 729500536 729500600 4.440000e-05 60.2
53 TraesCS3D01G401700 chr2B 81.538 65 12 0 4044 4108 723043233 723043297 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G401700 chr3D 516381181 516385291 4110 False 7592 7592 100.000000 1 4111 1 chr3D.!!$F2 4110
1 TraesCS3D01G401700 chr3B 679641938 679646157 4219 False 1925 3517 90.519000 1 4111 3 chr3B.!!$F1 4110
2 TraesCS3D01G401700 chr3A 651523096 651523766 670 False 880 880 90.653000 1 659 1 chr3A.!!$F2 658
3 TraesCS3D01G401700 chr3A 651584157 651588248 4091 False 681 2095 93.950625 658 4111 8 chr3A.!!$F3 3453

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
993 1050 0.176910 CGGAGGAAGAAGAAGGAGGC 59.823 60.0 0.0 0.0 0.0 4.70 F
1181 1238 0.970937 TACGACTTCTGCTCCCCCAG 60.971 60.0 0.0 0.0 0.0 4.45 F
2864 3610 0.696485 GTGGGGGATAGGGGCTACAA 60.696 60.0 0.0 0.0 0.0 2.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1817 2175 0.392193 CCGCACTGAGGCTCTGAAAT 60.392 55.000 25.68 2.93 0.00 2.17 R
2964 3723 0.393402 TCATGCTGGTGCTGGATGAC 60.393 55.000 0.00 0.00 35.90 3.06 R
3928 4695 3.080121 AGGCTCTGCTTCGGGAGG 61.080 66.667 0.00 0.00 34.02 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.019805 GGGAAGCACCTACAACTCGC 61.020 60.000 0.29 0.00 38.98 5.03
78 79 0.839946 CCCCTCCAGATTTCACCGAT 59.160 55.000 0.00 0.00 0.00 4.18
304 341 4.200092 GTCTTCTTGGGACAGTGAGTTTT 58.800 43.478 0.00 0.00 42.39 2.43
349 392 5.305902 TGGTGTCAGGTGTTTTAGATCTGTA 59.694 40.000 5.18 0.00 0.00 2.74
388 431 1.297689 CTGCAGCTCCAAGGCACTA 59.702 57.895 0.00 0.00 38.49 2.74
490 533 2.650116 TTGGCGGCTCTCTCTGACC 61.650 63.158 11.43 0.00 0.00 4.02
523 566 2.541346 CGTTCGATGGTCATGGAATCTG 59.459 50.000 10.65 2.85 37.74 2.90
564 608 6.054941 TGTTTGAGATGCTTTGTACTCTGAA 58.945 36.000 0.00 0.00 0.00 3.02
597 641 7.712264 ATAAAAGATCTGATGCTTTCGAGAG 57.288 36.000 0.00 0.00 33.50 3.20
599 643 4.572985 AGATCTGATGCTTTCGAGAGAG 57.427 45.455 7.23 0.00 43.69 3.20
871 923 1.404843 CCTCCTTTACTCCTCCTCCG 58.595 60.000 0.00 0.00 0.00 4.63
874 926 1.687297 CCTTTACTCCTCCTCCGCCC 61.687 65.000 0.00 0.00 0.00 6.13
955 1012 1.355066 CCAGAGCGCGAGAAGAAACC 61.355 60.000 12.10 0.00 0.00 3.27
967 1024 1.073923 GAAGAAACCAGCCCTTCCTGA 59.926 52.381 0.00 0.00 34.77 3.86
993 1050 0.176910 CGGAGGAAGAAGAAGGAGGC 59.823 60.000 0.00 0.00 0.00 4.70
1181 1238 0.970937 TACGACTTCTGCTCCCCCAG 60.971 60.000 0.00 0.00 0.00 4.45
1215 1272 1.537172 GTATCTGCCCCCTTTCCCC 59.463 63.158 0.00 0.00 0.00 4.81
1216 1273 0.994050 GTATCTGCCCCCTTTCCCCT 60.994 60.000 0.00 0.00 0.00 4.79
1345 1458 2.997986 GGTGTTTGTATGGGAGTGTACG 59.002 50.000 0.00 0.00 0.00 3.67
1417 1647 6.767902 ACTCGTATCAATAACTTGCCATGAAT 59.232 34.615 0.00 0.00 32.11 2.57
1515 1780 4.459337 CCAAACAACTCATACTCCCCTTTC 59.541 45.833 0.00 0.00 0.00 2.62
1592 1858 4.219070 ACGTTTAGCAACCTTTTTATCCCC 59.781 41.667 0.00 0.00 0.00 4.81
1603 1869 4.320202 CCTTTTTATCCCCGTATTCATGCG 60.320 45.833 0.00 0.00 35.63 4.73
1718 1984 5.175859 TCTTGACCTCCAAAACATATCGAC 58.824 41.667 0.00 0.00 33.76 4.20
1727 2004 5.123186 TCCAAAACATATCGACGAATGCTTT 59.877 36.000 0.00 8.27 0.00 3.51
1735 2012 4.647291 TCGACGAATGCTTTCTTTCTTC 57.353 40.909 10.29 0.00 0.00 2.87
1769 2126 4.160329 AGTGGAATGACCTGTAGTTCAGA 58.840 43.478 0.00 0.00 46.27 3.27
1770 2127 4.593206 AGTGGAATGACCTGTAGTTCAGAA 59.407 41.667 0.00 0.00 46.27 3.02
1771 2128 4.932200 GTGGAATGACCTGTAGTTCAGAAG 59.068 45.833 0.00 0.00 46.27 2.85
1772 2129 4.838423 TGGAATGACCTGTAGTTCAGAAGA 59.162 41.667 0.00 0.00 46.27 2.87
1947 2305 4.697352 GTCCTGTACACTGAGATTGCAATT 59.303 41.667 14.33 3.59 0.00 2.32
1949 2307 4.456911 CCTGTACACTGAGATTGCAATTGT 59.543 41.667 14.33 15.23 0.00 2.71
1986 2344 4.245660 CAGACACTTGAAAGGCGAAGATA 58.754 43.478 0.00 0.00 0.00 1.98
2116 2475 7.643569 TTAACATCATAAGCATTGTCACCAT 57.356 32.000 0.00 0.00 0.00 3.55
2124 2483 3.592059 AGCATTGTCACCATTGAAATGC 58.408 40.909 17.48 17.48 45.16 3.56
2125 2484 3.592059 GCATTGTCACCATTGAAATGCT 58.408 40.909 17.69 0.00 43.66 3.79
2126 2485 3.998341 GCATTGTCACCATTGAAATGCTT 59.002 39.130 17.69 0.00 43.66 3.91
2354 2715 3.261643 TGGAAGATGAGAACAAGCTGCTA 59.738 43.478 0.90 0.00 0.00 3.49
2491 2912 7.114247 GCGAACTGTTTAAATGCTGATTGTTTA 59.886 33.333 0.00 0.00 0.00 2.01
2492 2913 9.128107 CGAACTGTTTAAATGCTGATTGTTTAT 57.872 29.630 0.00 0.00 0.00 1.40
2555 3036 8.586273 CGGACTGTTTAAATGCTGATTATTTTG 58.414 33.333 0.00 0.00 0.00 2.44
2625 3107 1.619704 GCTGGGGGTAATGGAAGCTTT 60.620 52.381 0.00 0.00 0.00 3.51
2745 3487 5.368145 TCAACGATCCTTCCATCAATAAGG 58.632 41.667 0.00 0.00 43.11 2.69
2820 3562 8.498358 CACCTGAATTTTCATTTTAAAAGAGCC 58.502 33.333 6.79 0.00 36.46 4.70
2861 3607 1.010602 AGAGTGGGGGATAGGGGCTA 61.011 60.000 0.00 0.00 0.00 3.93
2864 3610 0.696485 GTGGGGGATAGGGGCTACAA 60.696 60.000 0.00 0.00 0.00 2.41
2875 3621 4.548451 AGGGGCTACAAGTTTACTACAC 57.452 45.455 0.00 0.00 0.00 2.90
2882 3628 6.035758 GGCTACAAGTTTACTACACTATGCAC 59.964 42.308 0.00 0.00 0.00 4.57
2929 3675 6.909550 TGCATTAGTTGTTACCAAAGGAAT 57.090 33.333 0.00 0.00 30.94 3.01
2964 3723 3.003689 AGGCTGTCTGTTTTTGTTCATCG 59.996 43.478 0.00 0.00 0.00 3.84
3122 3881 2.760385 AGCTAGGCCACCGACTCC 60.760 66.667 5.01 0.00 0.00 3.85
3123 3882 3.075005 GCTAGGCCACCGACTCCA 61.075 66.667 5.01 0.00 0.00 3.86
3252 4013 4.046938 ACGTAGTAGCTTGATGATGTGG 57.953 45.455 0.00 0.00 41.94 4.17
3333 4094 2.774439 CTGTAAGTTTGCACCACCAC 57.226 50.000 0.00 0.00 0.00 4.16
3334 4095 1.336755 CTGTAAGTTTGCACCACCACC 59.663 52.381 0.00 0.00 0.00 4.61
3392 4153 1.165270 GTTGTTTCCCTGATCACCGG 58.835 55.000 0.00 0.00 0.00 5.28
3393 4154 0.037590 TTGTTTCCCTGATCACCGGG 59.962 55.000 12.90 12.90 42.05 5.73
3423 4184 5.522460 CGGACGGTGAATAGTTTGTAATGAT 59.478 40.000 0.00 0.00 0.00 2.45
3497 4262 8.114331 TCAGCATCTTTCTACATGTTTCATTT 57.886 30.769 2.30 0.00 0.00 2.32
3514 4279 5.389859 TCATTTGGTATTTCAGCACAAGG 57.610 39.130 0.00 0.00 33.42 3.61
3552 4319 8.482128 ACAATCCATTTACACCAAGAAGAAAAA 58.518 29.630 0.00 0.00 0.00 1.94
3553 4320 8.981647 CAATCCATTTACACCAAGAAGAAAAAG 58.018 33.333 0.00 0.00 0.00 2.27
3947 4714 3.077556 TCCCGAAGCAGAGCCTCC 61.078 66.667 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 0.796927 GGAAAGCGAGTTGTAGGTGC 59.203 55.000 0.00 0.00 0.00 5.01
21 22 3.130693 CGTCTAGTGTTAGGGGAGGAAAG 59.869 52.174 0.00 0.00 0.00 2.62
78 79 2.028125 GAGGCGAATCCACGGGATCA 62.028 60.000 5.97 0.00 42.27 2.92
130 137 0.625683 AGGCACCATGATTCCCCTCT 60.626 55.000 0.00 0.00 0.00 3.69
259 296 0.972883 AGGAATCTATGCCGGAGCTC 59.027 55.000 5.05 4.71 40.80 4.09
349 392 1.011333 CGTCAACGTTGAACCCTTGT 58.989 50.000 31.20 0.00 39.21 3.16
482 525 1.557099 ACCACTATTGCGGTCAGAGA 58.443 50.000 0.00 0.00 0.00 3.10
490 533 1.255342 CATCGAACGACCACTATTGCG 59.745 52.381 0.00 0.00 0.00 4.85
523 566 7.319646 TCTCAAACATAATAAACATTGCACCC 58.680 34.615 0.00 0.00 0.00 4.61
634 686 0.741915 GATCGGTCTCAGGTCTCCAC 59.258 60.000 0.00 0.00 0.00 4.02
758 810 0.110464 GTGCTCTGTTTGCTTCGCTC 60.110 55.000 0.00 0.00 0.00 5.03
945 1002 1.352687 AGGAAGGGCTGGTTTCTTCTC 59.647 52.381 0.00 0.00 37.59 2.87
981 1038 1.687493 CCCTCCGCCTCCTTCTTCT 60.687 63.158 0.00 0.00 0.00 2.85
987 1044 4.888325 CCCATCCCTCCGCCTCCT 62.888 72.222 0.00 0.00 0.00 3.69
1215 1272 2.611518 ACGAAAAGCGAGATTCAGGAG 58.388 47.619 0.00 0.00 44.57 3.69
1216 1273 2.743636 ACGAAAAGCGAGATTCAGGA 57.256 45.000 0.00 0.00 44.57 3.86
1345 1458 9.595823 TTTTACCTATCTGCAGTGACTATAAAC 57.404 33.333 14.67 0.00 0.00 2.01
1417 1647 3.164268 CATTCAGACCAACCCAATTCCA 58.836 45.455 0.00 0.00 0.00 3.53
1515 1780 2.814805 AAATGTCATCCAGTCCAGGG 57.185 50.000 0.00 0.00 0.00 4.45
1592 1858 2.159761 ACCAAAACGACGCATGAATACG 60.160 45.455 0.00 0.00 0.00 3.06
1603 1869 2.081462 CCTATGTCCCACCAAAACGAC 58.919 52.381 0.00 0.00 0.00 4.34
1718 1984 3.916776 GGCTTGAAGAAAGAAAGCATTCG 59.083 43.478 8.69 0.00 46.46 3.34
1727 2004 1.421268 TCAGCCAGGCTTGAAGAAAGA 59.579 47.619 12.86 0.00 36.40 2.52
1735 2012 0.323178 ATTCCACTCAGCCAGGCTTG 60.323 55.000 12.86 8.07 36.40 4.01
1798 2156 7.283807 TCTGAAATATTGAATGTGTCCATCAGG 59.716 37.037 0.00 0.00 0.00 3.86
1817 2175 0.392193 CCGCACTGAGGCTCTGAAAT 60.392 55.000 25.68 2.93 0.00 2.17
1956 2314 3.679980 CCTTTCAAGTGTCTGTACCATCG 59.320 47.826 0.00 0.00 0.00 3.84
1986 2344 2.437359 GGGCTGCAGCGAGTTCAT 60.437 61.111 31.19 0.00 43.26 2.57
2512 2933 6.608610 ACAGTCCGCAAATATAGTTTTTGTC 58.391 36.000 0.00 0.00 36.63 3.18
2636 3118 9.529325 GCACCTACTTTTGATAAGTTTCTTTTT 57.471 29.630 0.00 0.00 0.00 1.94
2745 3487 9.301153 GGTATTACCAAATGATTGTCAACATTC 57.699 33.333 8.03 0.00 38.42 2.67
2820 3562 3.281341 TGCTCTATTTGCGTGTTTTGG 57.719 42.857 0.00 0.00 0.00 3.28
2861 3607 4.387862 GCGTGCATAGTGTAGTAAACTTGT 59.612 41.667 0.00 0.00 0.00 3.16
2864 3610 3.176708 CGCGTGCATAGTGTAGTAAACT 58.823 45.455 0.00 0.00 0.00 2.66
2882 3628 3.859745 ATAACTTGTACATGATGCGCG 57.140 42.857 15.13 0.00 0.00 6.86
2964 3723 0.393402 TCATGCTGGTGCTGGATGAC 60.393 55.000 0.00 0.00 35.90 3.06
3114 3873 2.207924 GGAGTGGTGTGGAGTCGGT 61.208 63.158 0.00 0.00 0.00 4.69
3122 3881 4.336433 GGATACATTTGATGGAGTGGTGTG 59.664 45.833 0.00 0.00 33.60 3.82
3123 3882 4.526970 GGATACATTTGATGGAGTGGTGT 58.473 43.478 0.00 0.00 33.60 4.16
3312 4073 2.020720 TGGTGGTGCAAACTTACAGTG 58.979 47.619 0.00 0.00 0.00 3.66
3333 4094 1.740585 CTACTGATATCTCGGCTCCGG 59.259 57.143 8.59 0.00 40.25 5.14
3334 4095 2.417239 GTCTACTGATATCTCGGCTCCG 59.583 54.545 3.98 1.14 41.35 4.63
3340 4101 7.441890 ACAATACCAGTCTACTGATATCTCG 57.558 40.000 11.69 0.44 46.59 4.04
3392 4153 0.179067 TATTCACCGTCCGGCAATCC 60.179 55.000 5.47 0.00 39.32 3.01
3393 4154 1.217882 CTATTCACCGTCCGGCAATC 58.782 55.000 5.47 0.00 39.32 2.67
3423 4184 8.307483 TCAAGATTTTCCACACTGTTTTTGTTA 58.693 29.630 0.00 0.00 0.00 2.41
3467 4229 6.922247 ACATGTAGAAAGATGCTGAATGAG 57.078 37.500 0.00 0.00 29.45 2.90
3497 4262 5.182950 CACATTACCTTGTGCTGAAATACCA 59.817 40.000 0.00 0.00 40.45 3.25
3514 4279 7.966204 GTGTAAATGGATTGTGTACCACATTAC 59.034 37.037 0.39 0.39 44.16 1.89
3627 4394 4.613929 GCTGAAGCTGGACTGGAG 57.386 61.111 0.00 0.00 38.21 3.86
3928 4695 3.080121 AGGCTCTGCTTCGGGAGG 61.080 66.667 0.00 0.00 34.02 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.