Multiple sequence alignment - TraesCS3D01G401300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G401300 chr3D 100.000 6023 0 0 1 6023 515958674 515964696 0.000000e+00 11123.0
1 TraesCS3D01G401300 chr3D 95.652 92 4 0 5746 5837 271512576 271512667 1.350000e-31 148.0
2 TraesCS3D01G401300 chr3D 88.333 120 9 4 5739 5854 55092767 55092885 8.140000e-29 139.0
3 TraesCS3D01G401300 chr3D 96.000 50 2 0 5688 5737 515964417 515964466 1.390000e-11 82.4
4 TraesCS3D01G401300 chr3D 94.231 52 3 0 4676 4727 61319404 61319455 5.000000e-11 80.5
5 TraesCS3D01G401300 chr3B 93.785 4425 206 38 7 4397 679196629 679201018 0.000000e+00 6584.0
6 TraesCS3D01G401300 chr3B 89.408 642 33 9 4726 5339 679201386 679202020 0.000000e+00 776.0
7 TraesCS3D01G401300 chr3B 97.093 172 5 0 5852 6023 679202637 679202808 2.120000e-74 291.0
8 TraesCS3D01G401300 chr3B 88.362 232 21 6 5475 5701 679202396 679202626 2.140000e-69 274.0
9 TraesCS3D01G401300 chr3B 88.591 149 13 2 5690 5837 241678773 241678918 1.720000e-40 178.0
10 TraesCS3D01G401300 chr3B 87.324 142 11 6 5697 5837 828548603 828548738 8.080000e-34 156.0
11 TraesCS3D01G401300 chr3B 94.231 52 3 0 4676 4727 663290927 663290876 5.000000e-11 80.5
12 TraesCS3D01G401300 chr3A 93.976 2822 120 26 27 2822 650421976 650424773 0.000000e+00 4224.0
13 TraesCS3D01G401300 chr3A 93.865 1581 82 9 2819 4392 650424844 650426416 0.000000e+00 2368.0
14 TraesCS3D01G401300 chr3A 90.208 674 26 8 4762 5415 650426983 650427636 0.000000e+00 843.0
15 TraesCS3D01G401300 chr3A 97.340 188 5 0 5836 6023 650428213 650428400 2.710000e-83 320.0
16 TraesCS3D01G401300 chr3A 85.902 305 28 7 5408 5699 650427913 650428215 1.630000e-80 311.0
17 TraesCS3D01G401300 chr2D 93.939 99 5 1 5742 5840 331544138 331544235 1.350000e-31 148.0
18 TraesCS3D01G401300 chr2D 91.667 60 2 2 5697 5753 629726125 629726066 5.000000e-11 80.5
19 TraesCS3D01G401300 chr7D 93.000 100 5 2 5744 5841 22959655 22959754 1.750000e-30 145.0
20 TraesCS3D01G401300 chr7D 90.179 112 6 5 5729 5837 426558874 426558983 2.260000e-29 141.0
21 TraesCS3D01G401300 chr7D 81.757 148 21 4 5696 5837 5579499 5579646 1.060000e-22 119.0
22 TraesCS3D01G401300 chr7D 94.444 36 2 0 5371 5406 259291275 259291310 8.430000e-04 56.5
23 TraesCS3D01G401300 chr1D 90.741 108 7 3 5744 5848 243753289 243753396 2.260000e-29 141.0
24 TraesCS3D01G401300 chr7A 96.226 53 2 0 4676 4728 425791951 425792003 2.990000e-13 87.9
25 TraesCS3D01G401300 chr7A 92.105 38 3 0 5371 5408 281374269 281374306 3.000000e-03 54.7
26 TraesCS3D01G401300 chr6D 94.545 55 3 0 4677 4731 96747851 96747797 1.080000e-12 86.1
27 TraesCS3D01G401300 chr1B 96.154 52 2 0 4676 4727 497472923 497472872 1.080000e-12 86.1
28 TraesCS3D01G401300 chr1B 94.340 53 3 0 4676 4728 619550835 619550887 1.390000e-11 82.4
29 TraesCS3D01G401300 chr1B 88.889 63 7 0 5476 5538 572291327 572291265 1.800000e-10 78.7
30 TraesCS3D01G401300 chr2B 96.154 52 1 1 4676 4727 600745722 600745772 3.870000e-12 84.2
31 TraesCS3D01G401300 chr2B 94.231 52 3 0 5691 5742 796586998 796587049 5.000000e-11 80.5
32 TraesCS3D01G401300 chr1A 97.917 48 1 0 5696 5743 353176264 353176217 3.870000e-12 84.2
33 TraesCS3D01G401300 chr5A 94.340 53 3 0 4676 4728 569803239 569803291 1.390000e-11 82.4
34 TraesCS3D01G401300 chr5A 92.857 56 2 2 5689 5743 36291098 36291152 5.000000e-11 80.5
35 TraesCS3D01G401300 chr4A 89.231 65 3 3 5692 5753 626960496 626960559 1.800000e-10 78.7
36 TraesCS3D01G401300 chr5B 86.957 69 7 2 4676 4744 666317088 666317154 6.470000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G401300 chr3D 515958674 515964696 6022 False 5602.70 11123 98.0000 1 6023 2 chr3D.!!$F4 6022
1 TraesCS3D01G401300 chr3B 679196629 679202808 6179 False 1981.25 6584 92.1620 7 6023 4 chr3B.!!$F3 6016
2 TraesCS3D01G401300 chr3A 650421976 650428400 6424 False 1613.20 4224 92.2582 27 6023 5 chr3A.!!$F1 5996

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
844 859 1.064314 TGGTGCTTTGGTTGGTACAGT 60.064 47.619 0.0 0.0 42.39 3.55 F
1008 1024 0.106708 TAGCGGGACTGATGGCATTC 59.893 55.000 0.0 0.0 0.00 2.67 F
2213 2253 0.402861 ACCTTCTGTTTCCTGGGGGA 60.403 55.000 0.0 0.0 40.36 4.81 F
3152 3277 0.111061 TGTTGCTGCCTCTGAATGGT 59.889 50.000 0.0 0.0 0.00 3.55 F
3288 3413 0.040958 CGAAGGCTGACAACACAAGC 60.041 55.000 0.0 0.0 0.00 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2195 2235 0.329596 CTCCCCCAGGAAACAGAAGG 59.670 60.000 0.0 0.0 43.40 3.46 R
2451 2495 1.262417 TGCATAGACTTCGGACACCA 58.738 50.000 0.0 0.0 0.00 4.17 R
3272 3397 0.107017 ACAGCTTGTGTTGTCAGCCT 60.107 50.000 0.0 0.0 34.94 4.58 R
4744 5125 0.316360 CAAACCGGTACAACACGCAC 60.316 55.000 8.0 0.0 0.00 5.34 R
5225 5656 2.679082 ACCTATCGGCTTCCAGTACAT 58.321 47.619 0.0 0.0 0.00 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 1.742831 GGCTGGTCACAATAATGCGAA 59.257 47.619 0.00 0.00 0.00 4.70
45 46 1.735018 TGGTCACAATAATGCGAACCG 59.265 47.619 0.00 0.00 31.62 4.44
477 486 2.436646 CCGTTCGGCTGATTGGCT 60.437 61.111 0.00 0.00 39.32 4.75
478 487 2.753966 CCGTTCGGCTGATTGGCTG 61.754 63.158 0.00 0.00 39.32 4.85
488 497 1.474077 CTGATTGGCTGGTGGTTTAGC 59.526 52.381 0.00 0.00 39.17 3.09
518 527 1.661821 CTATGGCGTCCGCTAGTGC 60.662 63.158 11.82 0.00 41.60 4.40
519 528 2.349969 CTATGGCGTCCGCTAGTGCA 62.350 60.000 11.82 0.85 41.60 4.57
525 534 1.603172 GCGTCCGCTAGTGCATTAGAT 60.603 52.381 19.51 0.00 39.64 1.98
529 538 1.193203 CCGCTAGTGCATTAGATTGCG 59.807 52.381 19.51 15.30 45.77 4.85
530 539 1.860950 CGCTAGTGCATTAGATTGCGT 59.139 47.619 19.51 0.00 45.77 5.24
532 541 3.126831 GCTAGTGCATTAGATTGCGTCT 58.873 45.455 19.51 0.00 45.77 4.18
533 542 3.060003 GCTAGTGCATTAGATTGCGTCTG 60.060 47.826 19.51 0.00 45.77 3.51
534 543 2.977914 AGTGCATTAGATTGCGTCTGT 58.022 42.857 0.00 0.00 45.77 3.41
535 544 4.123497 AGTGCATTAGATTGCGTCTGTA 57.877 40.909 0.00 0.00 45.77 2.74
567 576 4.834453 CCTGCTCGGAGCCAGCTG 62.834 72.222 26.00 6.78 41.51 4.24
587 596 1.451927 GCCCACAGATCCGATTGCA 60.452 57.895 0.00 0.00 0.00 4.08
591 600 2.033801 CCCACAGATCCGATTGCAATTC 59.966 50.000 14.33 7.06 0.00 2.17
593 602 1.331756 ACAGATCCGATTGCAATTCGC 59.668 47.619 14.33 0.00 42.89 4.70
596 605 1.713937 ATCCGATTGCAATTCGCGCA 61.714 50.000 14.33 0.00 46.97 6.09
618 627 1.413517 GGGAATGGGGATTTGCCAGAT 60.414 52.381 0.00 0.00 38.95 2.90
619 628 2.401568 GGAATGGGGATTTGCCAGATT 58.598 47.619 0.00 0.00 38.95 2.40
666 675 5.278266 GCTTTGTGGAGTAGTTATGTTTGCA 60.278 40.000 0.00 0.00 0.00 4.08
744 759 2.359531 CGTTGGCTTGGTAGGAAACAAA 59.640 45.455 0.00 0.00 0.00 2.83
770 785 2.296190 GGAAACAACGCTTTTCTGGGAT 59.704 45.455 4.55 0.00 34.06 3.85
806 821 1.399744 TAATGCTCTGCGGATCCGGT 61.400 55.000 33.98 6.04 40.19 5.28
829 844 3.625313 GCTTCCTTCTTTAGATCTGGTGC 59.375 47.826 5.18 3.01 0.00 5.01
844 859 1.064314 TGGTGCTTTGGTTGGTACAGT 60.064 47.619 0.00 0.00 42.39 3.55
1008 1024 0.106708 TAGCGGGACTGATGGCATTC 59.893 55.000 0.00 0.00 0.00 2.67
1089 1105 2.012948 GACCACCGTCGTCGTGTTC 61.013 63.158 0.71 0.00 35.01 3.18
1176 1192 1.140052 TCAAACAAGAAGTCGGAGCCA 59.860 47.619 0.00 0.00 0.00 4.75
1305 1321 4.058817 AGAAATTCGAGGACACTGACAAC 58.941 43.478 0.00 0.00 0.00 3.32
1414 1430 4.264083 TGGAGATGGCTGAAGAAAAGGAAT 60.264 41.667 0.00 0.00 0.00 3.01
1499 1515 1.923909 GTGCTAAGGAGGGTGGGGT 60.924 63.158 0.00 0.00 0.00 4.95
1532 1548 3.052262 TCTGGTGATGAGGAGGAGAAGAT 60.052 47.826 0.00 0.00 0.00 2.40
1713 1753 2.298446 TGGAGCTCAGTCTGAACTTCTG 59.702 50.000 17.19 0.00 31.71 3.02
1848 1888 6.299023 TGGAAATTATGTAATAGCAGTGCG 57.701 37.500 10.00 0.00 0.00 5.34
1896 1936 6.111382 TGACAATGAGAAGGCTATCAAGAAG 58.889 40.000 6.44 1.19 0.00 2.85
2023 2063 1.351017 CCAAGAGCAGGGACAAGGTAA 59.649 52.381 0.00 0.00 0.00 2.85
2026 2066 4.082125 CAAGAGCAGGGACAAGGTAATTT 58.918 43.478 0.00 0.00 0.00 1.82
2066 2106 9.715121 TGTTTCTATAACACCGAGTAATCTTTT 57.285 29.630 0.00 0.00 0.00 2.27
2068 2108 7.766219 TCTATAACACCGAGTAATCTTTTGC 57.234 36.000 0.00 0.00 0.00 3.68
2071 2111 3.074412 ACACCGAGTAATCTTTTGCTGG 58.926 45.455 0.00 0.00 0.00 4.85
2093 2133 6.539173 TGGTCAACTTCTCCTTTTGCTTATA 58.461 36.000 0.00 0.00 0.00 0.98
2095 2135 7.040686 TGGTCAACTTCTCCTTTTGCTTATAAC 60.041 37.037 0.00 0.00 0.00 1.89
2098 2138 8.567948 TCAACTTCTCCTTTTGCTTATAACAAG 58.432 33.333 0.00 0.00 0.00 3.16
2195 2235 3.762288 GGGTTAAAGTTTCTGGGGATCAC 59.238 47.826 0.00 0.00 0.00 3.06
2213 2253 0.402861 ACCTTCTGTTTCCTGGGGGA 60.403 55.000 0.00 0.00 40.36 4.81
2306 2348 2.550830 ATGACTCACTTCCACACACC 57.449 50.000 0.00 0.00 0.00 4.16
2311 2353 1.942657 CTCACTTCCACACACCAACAG 59.057 52.381 0.00 0.00 0.00 3.16
2348 2391 9.640963 CTATAACACATACCTAAGTATCAAGGC 57.359 37.037 0.00 0.00 37.06 4.35
2351 2394 6.900194 ACACATACCTAAGTATCAAGGCAAT 58.100 36.000 0.00 0.00 37.06 3.56
2377 2420 3.834813 TGCTATCACTCACTTGAAGGAGT 59.165 43.478 9.55 9.55 44.84 3.85
2433 2477 5.336150 TGCATGTTCTTTCTTTGAAACCA 57.664 34.783 0.00 0.00 0.00 3.67
2656 2705 1.398960 GCTCAAGTACAGTTTGCGCTG 60.399 52.381 9.73 0.00 41.92 5.18
2662 2711 0.966179 TACAGTTTGCGCTGGAGAGA 59.034 50.000 9.73 0.00 40.59 3.10
2795 2845 2.937519 TGTCTTGTGGTGGCATGTTTA 58.062 42.857 0.00 0.00 0.00 2.01
2796 2846 2.621055 TGTCTTGTGGTGGCATGTTTAC 59.379 45.455 0.00 0.00 0.00 2.01
2797 2847 2.030274 GTCTTGTGGTGGCATGTTTACC 60.030 50.000 0.00 7.84 35.05 2.85
2798 2848 1.272212 CTTGTGGTGGCATGTTTACCC 59.728 52.381 11.08 0.00 33.51 3.69
2805 2856 3.537580 GTGGCATGTTTACCCTTCGATA 58.462 45.455 0.00 0.00 0.00 2.92
2816 2874 3.768878 ACCCTTCGATATCTCCTGGTAG 58.231 50.000 0.34 0.00 0.00 3.18
2822 2947 4.580868 TCGATATCTCCTGGTAGCTACTG 58.419 47.826 22.74 15.29 0.00 2.74
2833 2958 5.221067 CCTGGTAGCTACTGTGTACTGTATG 60.221 48.000 22.74 0.00 31.43 2.39
2834 2959 5.503002 TGGTAGCTACTGTGTACTGTATGA 58.497 41.667 22.74 0.00 31.43 2.15
2986 3111 9.657419 AAGATGTTGAAATTTGGAATGGTATTC 57.343 29.630 0.00 0.00 0.00 1.75
2990 3115 9.308000 TGTTGAAATTTGGAATGGTATTCTACT 57.692 29.630 0.00 0.00 0.00 2.57
2995 3120 8.877864 AATTTGGAATGGTATTCTACTGAACA 57.122 30.769 2.03 0.00 34.71 3.18
2997 3122 6.620877 TGGAATGGTATTCTACTGAACACT 57.379 37.500 2.03 0.00 34.71 3.55
3003 3128 9.574516 AATGGTATTCTACTGAACACTTCTTTT 57.425 29.630 0.00 0.00 34.71 2.27
3020 3145 6.474751 ACTTCTTTTAATATCACTCGTACCGC 59.525 38.462 0.00 0.00 0.00 5.68
3022 3147 5.975344 TCTTTTAATATCACTCGTACCGCTG 59.025 40.000 0.00 0.00 0.00 5.18
3031 3156 1.198408 CTCGTACCGCTGTACAGAACA 59.802 52.381 27.08 4.99 46.33 3.18
3055 3180 4.195416 TGCTGCAATATCAATGAACCGTA 58.805 39.130 0.00 0.00 0.00 4.02
3056 3181 4.035091 TGCTGCAATATCAATGAACCGTAC 59.965 41.667 0.00 0.00 0.00 3.67
3067 3192 1.669779 TGAACCGTACCAAAACCGTTG 59.330 47.619 0.00 0.00 0.00 4.10
3081 3206 4.794278 AACCGTTGTTTTCCTCTGTTTT 57.206 36.364 0.00 0.00 0.00 2.43
3083 3208 4.740268 ACCGTTGTTTTCCTCTGTTTTTC 58.260 39.130 0.00 0.00 0.00 2.29
3119 3244 2.930950 AGCTGTTCACTTGCTTTGGTA 58.069 42.857 0.00 0.00 32.61 3.25
3120 3245 2.618709 AGCTGTTCACTTGCTTTGGTAC 59.381 45.455 0.00 0.00 32.61 3.34
3126 3251 3.411446 TCACTTGCTTTGGTACATCAGG 58.589 45.455 0.00 0.00 39.30 3.86
3129 3254 4.278170 CACTTGCTTTGGTACATCAGGAAA 59.722 41.667 0.00 0.00 39.30 3.13
3132 3257 5.195001 TGCTTTGGTACATCAGGAAAAAC 57.805 39.130 0.00 0.00 39.30 2.43
3152 3277 0.111061 TGTTGCTGCCTCTGAATGGT 59.889 50.000 0.00 0.00 0.00 3.55
3153 3278 1.251251 GTTGCTGCCTCTGAATGGTT 58.749 50.000 0.00 0.00 0.00 3.67
3170 3295 9.613428 CTGAATGGTTACACCTGATTTTCTATA 57.387 33.333 0.00 0.00 39.58 1.31
3187 3312 9.959721 ATTTTCTATAGAACACTACACCACAAT 57.040 29.630 14.85 5.00 33.13 2.71
3193 3318 2.846193 ACACTACACCACAATCCACAC 58.154 47.619 0.00 0.00 0.00 3.82
3195 3320 2.548057 CACTACACCACAATCCACACAC 59.452 50.000 0.00 0.00 0.00 3.82
3203 3328 3.822735 CCACAATCCACACACAGAGAAAT 59.177 43.478 0.00 0.00 0.00 2.17
3207 3332 6.149973 CACAATCCACACACAGAGAAATACAT 59.850 38.462 0.00 0.00 0.00 2.29
3230 3355 6.260870 TGTTGCTTGTAACAGAAGTTCAAA 57.739 33.333 5.50 0.00 39.15 2.69
3235 3360 6.751425 TGCTTGTAACAGAAGTTCAAATGTTG 59.249 34.615 15.58 3.34 39.15 3.33
3262 3387 8.917415 AAACTCTCTTTCATTGTTCTTTTCAC 57.083 30.769 0.00 0.00 0.00 3.18
3263 3388 7.032377 ACTCTCTTTCATTGTTCTTTTCACC 57.968 36.000 0.00 0.00 0.00 4.02
3264 3389 6.830838 ACTCTCTTTCATTGTTCTTTTCACCT 59.169 34.615 0.00 0.00 0.00 4.00
3265 3390 7.993183 ACTCTCTTTCATTGTTCTTTTCACCTA 59.007 33.333 0.00 0.00 0.00 3.08
3270 3395 9.329913 CTTTCATTGTTCTTTTCACCTATAACG 57.670 33.333 0.00 0.00 0.00 3.18
3272 3397 8.610248 TCATTGTTCTTTTCACCTATAACGAA 57.390 30.769 0.00 0.00 0.00 3.85
3279 3404 3.795623 TCACCTATAACGAAGGCTGAC 57.204 47.619 0.00 0.00 37.67 3.51
3281 3406 3.512329 TCACCTATAACGAAGGCTGACAA 59.488 43.478 0.00 0.00 37.67 3.18
3288 3413 0.040958 CGAAGGCTGACAACACAAGC 60.041 55.000 0.00 0.00 0.00 4.01
3357 3484 4.858850 TGTGCCCAACTTCATGAATAGAT 58.141 39.130 8.96 0.00 0.00 1.98
3359 3486 5.716228 TGTGCCCAACTTCATGAATAGATTT 59.284 36.000 8.96 0.00 0.00 2.17
3365 3492 7.775093 CCCAACTTCATGAATAGATTTGACCTA 59.225 37.037 8.96 0.00 0.00 3.08
3417 3545 4.441792 ACCAACTGCAAAGTTTTTCATCC 58.558 39.130 0.00 0.00 0.00 3.51
3426 3554 5.933463 GCAAAGTTTTTCATCCATCATCCAA 59.067 36.000 0.00 0.00 0.00 3.53
3443 3571 5.485353 TCATCCAAGTGAACCAGATCTAACT 59.515 40.000 0.00 0.00 0.00 2.24
3444 3572 5.825593 TCCAAGTGAACCAGATCTAACTT 57.174 39.130 0.00 0.00 0.00 2.66
3450 3578 6.831976 AGTGAACCAGATCTAACTTTCAGTT 58.168 36.000 0.00 0.00 41.97 3.16
3572 3700 2.622942 TCAGAAGCCAATGGACAACAAC 59.377 45.455 2.05 0.00 0.00 3.32
3578 3706 2.493278 GCCAATGGACAACAACTGCTAT 59.507 45.455 2.05 0.00 0.00 2.97
3620 3748 0.451783 CACCGCTATGCAAGGAAACC 59.548 55.000 7.70 0.00 0.00 3.27
3655 3783 3.290710 CTGCATGGTATGGTTAAGGCTT 58.709 45.455 4.58 4.58 0.00 4.35
3657 3785 3.446873 TGCATGGTATGGTTAAGGCTTTG 59.553 43.478 4.45 0.00 0.00 2.77
3658 3786 3.737972 GCATGGTATGGTTAAGGCTTTGC 60.738 47.826 4.45 0.74 0.00 3.68
3660 3788 4.577988 TGGTATGGTTAAGGCTTTGCTA 57.422 40.909 4.45 0.00 0.00 3.49
3662 3790 3.311596 GGTATGGTTAAGGCTTTGCTACG 59.688 47.826 4.45 0.00 0.00 3.51
3663 3791 2.554370 TGGTTAAGGCTTTGCTACGT 57.446 45.000 4.45 0.00 0.00 3.57
3664 3792 2.853705 TGGTTAAGGCTTTGCTACGTT 58.146 42.857 4.45 0.00 0.00 3.99
3764 3897 0.179140 CCAAATTGCCGATTGGTCCG 60.179 55.000 0.00 0.00 40.96 4.79
4007 4141 3.009805 ACGGAGGGTAAGTAAATGGCTTT 59.990 43.478 0.00 0.00 0.00 3.51
4013 4147 7.560262 GGAGGGTAAGTAAATGGCTTTCTTTAT 59.440 37.037 0.00 0.00 0.00 1.40
4044 4179 8.481974 TCGATGATGCATTTTGATTTTGAATT 57.518 26.923 0.00 0.00 0.00 2.17
4215 4350 1.778334 TATCGTGCCAATCGATTCGG 58.222 50.000 7.92 13.95 43.98 4.30
4316 4451 5.360591 CCAAGAACATATGACCTCCTACAC 58.639 45.833 10.38 0.00 0.00 2.90
4361 4496 5.971792 GCTCAAAAAGAGGTCAGTGTTTTAC 59.028 40.000 0.00 0.00 44.86 2.01
4375 4510 5.365619 AGTGTTTTACTGTCTCGGTGATTT 58.634 37.500 0.00 0.00 38.49 2.17
4392 4527 8.092068 TCGGTGATTTCAGTTTCTTCATACTTA 58.908 33.333 0.00 0.00 0.00 2.24
4412 4786 7.583860 ACTTACTAGACTGAAATTCGCTTTC 57.416 36.000 0.00 4.02 43.05 2.62
4428 4802 3.250762 CGCTTTCATTCACTGTTTGGAGA 59.749 43.478 0.00 0.00 0.00 3.71
4432 4806 6.703165 GCTTTCATTCACTGTTTGGAGAATTT 59.297 34.615 0.00 0.00 0.00 1.82
4433 4807 7.306983 GCTTTCATTCACTGTTTGGAGAATTTG 60.307 37.037 0.00 0.00 0.00 2.32
4434 4808 6.957920 TCATTCACTGTTTGGAGAATTTGA 57.042 33.333 0.00 0.00 0.00 2.69
4443 4817 7.492344 ACTGTTTGGAGAATTTGAAACATCAAC 59.508 33.333 0.00 0.00 37.60 3.18
4455 4831 5.250982 TGAAACATCAACTCAGCTCATGAT 58.749 37.500 0.00 0.00 37.28 2.45
4461 4837 7.960262 ACATCAACTCAGCTCATGATAAGATA 58.040 34.615 0.00 0.00 37.28 1.98
4462 4838 8.427276 ACATCAACTCAGCTCATGATAAGATAA 58.573 33.333 0.00 0.00 37.28 1.75
4463 4839 8.710551 CATCAACTCAGCTCATGATAAGATAAC 58.289 37.037 0.00 0.00 37.28 1.89
4469 4845 8.883954 TCAGCTCATGATAAGATAACTTTGAG 57.116 34.615 0.00 7.46 38.87 3.02
4511 4892 6.866480 TCTTGAAATATTCCTTGCATCCAAC 58.134 36.000 0.00 0.00 0.00 3.77
4521 4902 3.054802 CCTTGCATCCAACTACCTCTCTT 60.055 47.826 0.00 0.00 0.00 2.85
4526 4907 2.986050 TCCAACTACCTCTCTTTGGGT 58.014 47.619 0.00 0.00 39.27 4.51
4534 4915 3.497332 ACCTCTCTTTGGGTTTTAAGCC 58.503 45.455 3.79 3.79 46.58 4.35
4543 4924 1.274167 GGGTTTTAAGCCCCTTTTCGG 59.726 52.381 5.50 0.00 40.65 4.30
4544 4925 2.241160 GGTTTTAAGCCCCTTTTCGGA 58.759 47.619 0.00 0.00 33.16 4.55
4545 4926 2.629137 GGTTTTAAGCCCCTTTTCGGAA 59.371 45.455 0.00 0.00 33.16 4.30
4575 4956 4.277009 TCCGCACATGCCACCCAA 62.277 61.111 0.00 0.00 37.91 4.12
4583 4964 2.624838 CACATGCCACCCAATTCCTATC 59.375 50.000 0.00 0.00 0.00 2.08
4592 4973 7.293771 TGCCACCCAATTCCTATCTTTATACTA 59.706 37.037 0.00 0.00 0.00 1.82
4604 4985 9.774413 CCTATCTTTATACTATTCGTGGGTTTT 57.226 33.333 0.00 0.00 0.00 2.43
4619 5000 5.240121 GTGGGTTTTTCAATTCATGCATCT 58.760 37.500 0.00 0.00 0.00 2.90
4641 5022 4.016444 TGAATGGGCCTCAAGTATTTGAC 58.984 43.478 4.53 0.00 38.37 3.18
4656 5037 6.937392 AGTATTTGACTCCTACAAGGTTCTC 58.063 40.000 0.00 0.00 36.53 2.87
4657 5038 5.825593 ATTTGACTCCTACAAGGTTCTCA 57.174 39.130 0.00 0.00 36.53 3.27
4662 5043 7.584122 TGACTCCTACAAGGTTCTCATATAC 57.416 40.000 0.00 0.00 36.53 1.47
4663 5044 7.355101 TGACTCCTACAAGGTTCTCATATACT 58.645 38.462 0.00 0.00 36.53 2.12
4664 5045 7.839705 TGACTCCTACAAGGTTCTCATATACTT 59.160 37.037 0.00 0.00 36.53 2.24
4665 5046 8.240267 ACTCCTACAAGGTTCTCATATACTTC 57.760 38.462 0.00 0.00 36.53 3.01
4666 5047 7.288158 ACTCCTACAAGGTTCTCATATACTTCC 59.712 40.741 0.00 0.00 36.53 3.46
4667 5048 7.363031 TCCTACAAGGTTCTCATATACTTCCT 58.637 38.462 0.00 0.00 36.53 3.36
4668 5049 7.506261 TCCTACAAGGTTCTCATATACTTCCTC 59.494 40.741 0.00 0.00 36.53 3.71
4669 5050 6.487299 ACAAGGTTCTCATATACTTCCTCC 57.513 41.667 0.00 0.00 0.00 4.30
4670 5051 5.069251 ACAAGGTTCTCATATACTTCCTCCG 59.931 44.000 0.00 0.00 0.00 4.63
4671 5052 4.805744 AGGTTCTCATATACTTCCTCCGT 58.194 43.478 0.00 0.00 0.00 4.69
4672 5053 5.209659 AGGTTCTCATATACTTCCTCCGTT 58.790 41.667 0.00 0.00 0.00 4.44
4673 5054 5.302313 AGGTTCTCATATACTTCCTCCGTTC 59.698 44.000 0.00 0.00 0.00 3.95
4674 5055 5.509332 GGTTCTCATATACTTCCTCCGTTCC 60.509 48.000 0.00 0.00 0.00 3.62
4675 5056 5.063017 TCTCATATACTTCCTCCGTTCCT 57.937 43.478 0.00 0.00 0.00 3.36
4676 5057 6.196918 TCTCATATACTTCCTCCGTTCCTA 57.803 41.667 0.00 0.00 0.00 2.94
4677 5058 6.239396 TCTCATATACTTCCTCCGTTCCTAG 58.761 44.000 0.00 0.00 0.00 3.02
4678 5059 5.950023 TCATATACTTCCTCCGTTCCTAGT 58.050 41.667 0.00 0.00 0.00 2.57
4679 5060 6.371278 TCATATACTTCCTCCGTTCCTAGTT 58.629 40.000 0.00 0.00 0.00 2.24
4680 5061 6.489361 TCATATACTTCCTCCGTTCCTAGTTC 59.511 42.308 0.00 0.00 0.00 3.01
4681 5062 2.885616 ACTTCCTCCGTTCCTAGTTCA 58.114 47.619 0.00 0.00 0.00 3.18
4682 5063 3.236896 ACTTCCTCCGTTCCTAGTTCAA 58.763 45.455 0.00 0.00 0.00 2.69
4683 5064 3.644738 ACTTCCTCCGTTCCTAGTTCAAA 59.355 43.478 0.00 0.00 0.00 2.69
4684 5065 4.286291 ACTTCCTCCGTTCCTAGTTCAAAT 59.714 41.667 0.00 0.00 0.00 2.32
4685 5066 4.903045 TCCTCCGTTCCTAGTTCAAATT 57.097 40.909 0.00 0.00 0.00 1.82
4686 5067 5.237236 TCCTCCGTTCCTAGTTCAAATTT 57.763 39.130 0.00 0.00 0.00 1.82
4687 5068 5.001232 TCCTCCGTTCCTAGTTCAAATTTG 58.999 41.667 12.15 12.15 0.00 2.32
4688 5069 5.001232 CCTCCGTTCCTAGTTCAAATTTGA 58.999 41.667 16.91 16.91 34.92 2.69
4689 5070 5.472137 CCTCCGTTCCTAGTTCAAATTTGAA 59.528 40.000 26.01 26.01 44.31 2.69
4704 5085 8.641499 TCAAATTTGAACTAAAACCATGACAC 57.359 30.769 18.45 0.00 33.55 3.67
4705 5086 8.474025 TCAAATTTGAACTAAAACCATGACACT 58.526 29.630 18.45 0.00 33.55 3.55
4706 5087 9.097257 CAAATTTGAACTAAAACCATGACACTT 57.903 29.630 13.08 0.00 0.00 3.16
4712 5093 9.743057 TGAACTAAAACCATGACACTTATTTTG 57.257 29.630 0.00 0.00 0.00 2.44
4713 5094 9.959749 GAACTAAAACCATGACACTTATTTTGA 57.040 29.630 0.00 0.00 0.00 2.69
4718 5099 8.606040 AAACCATGACACTTATTTTGAAATGG 57.394 30.769 0.00 0.00 36.93 3.16
4719 5100 7.537596 ACCATGACACTTATTTTGAAATGGA 57.462 32.000 4.94 0.00 35.65 3.41
4720 5101 7.605449 ACCATGACACTTATTTTGAAATGGAG 58.395 34.615 4.94 1.06 35.65 3.86
4721 5102 7.037438 CCATGACACTTATTTTGAAATGGAGG 58.963 38.462 0.00 0.00 34.82 4.30
4722 5103 6.588719 TGACACTTATTTTGAAATGGAGGG 57.411 37.500 0.00 1.96 0.00 4.30
4723 5104 6.310941 TGACACTTATTTTGAAATGGAGGGA 58.689 36.000 9.46 0.00 0.00 4.20
4724 5105 6.434028 TGACACTTATTTTGAAATGGAGGGAG 59.566 38.462 9.46 0.00 0.00 4.30
4725 5106 6.314917 ACACTTATTTTGAAATGGAGGGAGT 58.685 36.000 9.46 0.00 0.00 3.85
4726 5107 7.466804 ACACTTATTTTGAAATGGAGGGAGTA 58.533 34.615 9.46 0.00 0.00 2.59
4727 5108 8.116026 ACACTTATTTTGAAATGGAGGGAGTAT 58.884 33.333 9.46 0.00 0.00 2.12
4741 5122 3.053395 AGGGAGTATGTGCCAACATCATT 60.053 43.478 0.00 0.00 43.85 2.57
4742 5123 3.701040 GGGAGTATGTGCCAACATCATTT 59.299 43.478 0.00 0.00 43.85 2.32
4743 5124 4.160252 GGGAGTATGTGCCAACATCATTTT 59.840 41.667 0.00 0.00 43.85 1.82
4744 5125 5.104374 GGAGTATGTGCCAACATCATTTTG 58.896 41.667 0.00 0.00 43.85 2.44
4751 5132 2.741612 CCAACATCATTTTGTGCGTGT 58.258 42.857 0.00 0.00 0.00 4.49
4753 5134 3.060406 CCAACATCATTTTGTGCGTGTTG 60.060 43.478 8.60 8.60 44.60 3.33
4760 5164 0.743701 TTTGTGCGTGTTGTACCGGT 60.744 50.000 13.98 13.98 31.26 5.28
5023 5427 2.208431 AGATCGAAGCAAGCATGTAGC 58.792 47.619 0.00 0.00 46.19 3.58
5067 5472 1.544246 GTTACCGGTTAGTGGGTACGT 59.456 52.381 15.04 0.00 38.47 3.57
5068 5473 2.750712 GTTACCGGTTAGTGGGTACGTA 59.249 50.000 15.04 0.00 38.47 3.57
5069 5474 1.173913 ACCGGTTAGTGGGTACGTAC 58.826 55.000 17.56 17.56 33.95 3.67
5256 5687 3.016997 CGATAGGTAGAGCCACGGA 57.983 57.895 0.00 0.00 40.61 4.69
5257 5688 0.875728 CGATAGGTAGAGCCACGGAG 59.124 60.000 0.00 0.00 40.61 4.63
5278 5709 0.393537 GGAGGGTGGCATCAGTTCTG 60.394 60.000 0.00 0.00 0.00 3.02
5280 5711 1.211457 GAGGGTGGCATCAGTTCTGAT 59.789 52.381 9.22 9.22 0.00 2.90
5341 5772 3.125316 GTCCTTGAATTCGTGATGTCACC 59.875 47.826 7.51 0.00 43.66 4.02
5342 5773 2.094258 CCTTGAATTCGTGATGTCACCG 59.906 50.000 7.51 3.69 43.66 4.94
5343 5774 2.734276 TGAATTCGTGATGTCACCGA 57.266 45.000 7.51 5.76 43.66 4.69
5385 5910 3.932459 GCTTATGGCTGTGTGCATC 57.068 52.632 0.00 0.00 45.15 3.91
5422 6237 3.984770 CCTGGGGACTGGGGTTATTTATA 59.015 47.826 0.00 0.00 45.15 0.98
5428 6243 7.298552 TGGGGACTGGGGTTATTTATATTACAT 59.701 37.037 0.00 0.00 0.00 2.29
5431 6246 9.449719 GGACTGGGGTTATTTATATTACATCTG 57.550 37.037 0.00 0.00 0.00 2.90
5432 6247 8.863872 ACTGGGGTTATTTATATTACATCTGC 57.136 34.615 0.00 0.00 0.00 4.26
5445 6260 3.207265 ACATCTGCCACACACTTACAA 57.793 42.857 0.00 0.00 0.00 2.41
5465 6280 1.079819 CGTGGCCCACTGTCAGTAG 60.080 63.158 12.94 0.00 31.34 2.57
5539 6388 1.138859 CATCGGATACAGTGGCCTTCA 59.861 52.381 3.32 0.00 0.00 3.02
5547 6396 3.730761 GTGGCCTTCACAGCGCAG 61.731 66.667 11.47 3.33 45.39 5.18
5595 6448 4.390297 GTCAGTTAACATCTTCAGTCTGCC 59.610 45.833 8.61 0.00 0.00 4.85
5599 6452 0.908198 ACATCTTCAGTCTGCCCTCC 59.092 55.000 0.00 0.00 0.00 4.30
5606 6459 0.823460 CAGTCTGCCCTCCTCTTCTC 59.177 60.000 0.00 0.00 0.00 2.87
5690 6546 4.402528 CCATCCGGGCCGTCACAA 62.403 66.667 26.32 4.89 0.00 3.33
5701 6557 1.197036 GCCGTCACAAAAAGCTACTCC 59.803 52.381 0.00 0.00 0.00 3.85
5702 6558 1.804748 CCGTCACAAAAAGCTACTCCC 59.195 52.381 0.00 0.00 0.00 4.30
5703 6559 2.550208 CCGTCACAAAAAGCTACTCCCT 60.550 50.000 0.00 0.00 0.00 4.20
5704 6560 2.737252 CGTCACAAAAAGCTACTCCCTC 59.263 50.000 0.00 0.00 0.00 4.30
5705 6561 3.075148 GTCACAAAAAGCTACTCCCTCC 58.925 50.000 0.00 0.00 0.00 4.30
5706 6562 2.076863 CACAAAAAGCTACTCCCTCCG 58.923 52.381 0.00 0.00 0.00 4.63
5707 6563 1.697982 ACAAAAAGCTACTCCCTCCGT 59.302 47.619 0.00 0.00 0.00 4.69
5708 6564 2.105993 ACAAAAAGCTACTCCCTCCGTT 59.894 45.455 0.00 0.00 0.00 4.44
5709 6565 2.742589 CAAAAAGCTACTCCCTCCGTTC 59.257 50.000 0.00 0.00 0.00 3.95
5710 6566 0.903236 AAAGCTACTCCCTCCGTTCC 59.097 55.000 0.00 0.00 0.00 3.62
5711 6567 0.252103 AAGCTACTCCCTCCGTTCCA 60.252 55.000 0.00 0.00 0.00 3.53
5712 6568 0.032017 AGCTACTCCCTCCGTTCCAT 60.032 55.000 0.00 0.00 0.00 3.41
5713 6569 1.217183 AGCTACTCCCTCCGTTCCATA 59.783 52.381 0.00 0.00 0.00 2.74
5714 6570 2.037144 GCTACTCCCTCCGTTCCATAA 58.963 52.381 0.00 0.00 0.00 1.90
5715 6571 2.633481 GCTACTCCCTCCGTTCCATAAT 59.367 50.000 0.00 0.00 0.00 1.28
5716 6572 3.830755 GCTACTCCCTCCGTTCCATAATA 59.169 47.826 0.00 0.00 0.00 0.98
5717 6573 4.466726 GCTACTCCCTCCGTTCCATAATAT 59.533 45.833 0.00 0.00 0.00 1.28
5718 6574 5.655532 GCTACTCCCTCCGTTCCATAATATA 59.344 44.000 0.00 0.00 0.00 0.86
5719 6575 6.154021 GCTACTCCCTCCGTTCCATAATATAA 59.846 42.308 0.00 0.00 0.00 0.98
5720 6576 6.607004 ACTCCCTCCGTTCCATAATATAAG 57.393 41.667 0.00 0.00 0.00 1.73
5721 6577 6.320518 ACTCCCTCCGTTCCATAATATAAGA 58.679 40.000 0.00 0.00 0.00 2.10
5722 6578 6.437793 ACTCCCTCCGTTCCATAATATAAGAG 59.562 42.308 0.00 0.00 0.00 2.85
5723 6579 5.187186 TCCCTCCGTTCCATAATATAAGAGC 59.813 44.000 0.00 0.00 0.00 4.09
5724 6580 5.103000 CCTCCGTTCCATAATATAAGAGCG 58.897 45.833 3.06 3.06 33.46 5.03
5725 6581 5.336531 CCTCCGTTCCATAATATAAGAGCGT 60.337 44.000 7.53 0.00 32.01 5.07
5726 6582 6.092955 TCCGTTCCATAATATAAGAGCGTT 57.907 37.500 7.53 0.00 32.01 4.84
5727 6583 6.518493 TCCGTTCCATAATATAAGAGCGTTT 58.482 36.000 7.53 0.00 32.01 3.60
5728 6584 6.987992 TCCGTTCCATAATATAAGAGCGTTTT 59.012 34.615 7.53 0.00 32.01 2.43
5729 6585 7.496591 TCCGTTCCATAATATAAGAGCGTTTTT 59.503 33.333 7.53 0.00 32.01 1.94
5730 6586 7.797123 CCGTTCCATAATATAAGAGCGTTTTTC 59.203 37.037 7.53 0.00 32.01 2.29
5731 6587 8.332464 CGTTCCATAATATAAGAGCGTTTTTCA 58.668 33.333 0.00 0.00 0.00 2.69
5732 6588 9.434559 GTTCCATAATATAAGAGCGTTTTTCAC 57.565 33.333 0.00 0.00 0.00 3.18
5733 6589 8.725405 TCCATAATATAAGAGCGTTTTTCACA 57.275 30.769 0.00 0.00 0.00 3.58
5734 6590 8.609176 TCCATAATATAAGAGCGTTTTTCACAC 58.391 33.333 0.00 0.00 0.00 3.82
5735 6591 8.612619 CCATAATATAAGAGCGTTTTTCACACT 58.387 33.333 0.00 0.00 0.00 3.55
5738 6594 8.542497 AATATAAGAGCGTTTTTCACACTACA 57.458 30.769 0.00 0.00 0.00 2.74
5739 6595 4.531659 AAGAGCGTTTTTCACACTACAC 57.468 40.909 0.00 0.00 0.00 2.90
5740 6596 3.793559 AGAGCGTTTTTCACACTACACT 58.206 40.909 0.00 0.00 0.00 3.55
5741 6597 4.940463 AGAGCGTTTTTCACACTACACTA 58.060 39.130 0.00 0.00 0.00 2.74
5742 6598 4.982916 AGAGCGTTTTTCACACTACACTAG 59.017 41.667 0.00 0.00 0.00 2.57
5743 6599 4.940463 AGCGTTTTTCACACTACACTAGA 58.060 39.130 0.00 0.00 0.00 2.43
5744 6600 4.743644 AGCGTTTTTCACACTACACTAGAC 59.256 41.667 0.00 0.00 0.00 2.59
5745 6601 4.505191 GCGTTTTTCACACTACACTAGACA 59.495 41.667 0.00 0.00 0.00 3.41
5746 6602 5.005971 GCGTTTTTCACACTACACTAGACAA 59.994 40.000 0.00 0.00 0.00 3.18
5747 6603 6.455913 GCGTTTTTCACACTACACTAGACAAA 60.456 38.462 0.00 0.00 0.00 2.83
5748 6604 7.457868 CGTTTTTCACACTACACTAGACAAAA 58.542 34.615 0.00 0.00 0.00 2.44
5749 6605 7.958567 CGTTTTTCACACTACACTAGACAAAAA 59.041 33.333 0.00 0.00 0.00 1.94
5750 6606 9.274065 GTTTTTCACACTACACTAGACAAAAAG 57.726 33.333 0.00 0.00 0.00 2.27
5751 6607 6.598753 TTCACACTACACTAGACAAAAAGC 57.401 37.500 0.00 0.00 0.00 3.51
5752 6608 5.914033 TCACACTACACTAGACAAAAAGCT 58.086 37.500 0.00 0.00 0.00 3.74
5753 6609 7.046292 TCACACTACACTAGACAAAAAGCTA 57.954 36.000 0.00 0.00 0.00 3.32
5754 6610 6.921857 TCACACTACACTAGACAAAAAGCTAC 59.078 38.462 0.00 0.00 0.00 3.58
5755 6611 6.924060 CACACTACACTAGACAAAAAGCTACT 59.076 38.462 0.00 0.00 0.00 2.57
5756 6612 7.115095 CACACTACACTAGACAAAAAGCTACTC 59.885 40.741 0.00 0.00 0.00 2.59
5757 6613 6.586844 CACTACACTAGACAAAAAGCTACTCC 59.413 42.308 0.00 0.00 0.00 3.85
5758 6614 4.895961 ACACTAGACAAAAAGCTACTCCC 58.104 43.478 0.00 0.00 0.00 4.30
5759 6615 4.593634 ACACTAGACAAAAAGCTACTCCCT 59.406 41.667 0.00 0.00 0.00 4.20
5760 6616 5.172205 CACTAGACAAAAAGCTACTCCCTC 58.828 45.833 0.00 0.00 0.00 4.30
5761 6617 3.704800 AGACAAAAAGCTACTCCCTCC 57.295 47.619 0.00 0.00 0.00 4.30
5762 6618 2.979678 AGACAAAAAGCTACTCCCTCCA 59.020 45.455 0.00 0.00 0.00 3.86
5763 6619 3.589288 AGACAAAAAGCTACTCCCTCCAT 59.411 43.478 0.00 0.00 0.00 3.41
5764 6620 3.942115 GACAAAAAGCTACTCCCTCCATC 59.058 47.826 0.00 0.00 0.00 3.51
5765 6621 3.282885 CAAAAAGCTACTCCCTCCATCC 58.717 50.000 0.00 0.00 0.00 3.51
5766 6622 1.512735 AAAGCTACTCCCTCCATCCC 58.487 55.000 0.00 0.00 0.00 3.85
5767 6623 0.343372 AAGCTACTCCCTCCATCCCA 59.657 55.000 0.00 0.00 0.00 4.37
5768 6624 0.570218 AGCTACTCCCTCCATCCCAT 59.430 55.000 0.00 0.00 0.00 4.00
5769 6625 1.795786 AGCTACTCCCTCCATCCCATA 59.204 52.381 0.00 0.00 0.00 2.74
5770 6626 2.182312 AGCTACTCCCTCCATCCCATAA 59.818 50.000 0.00 0.00 0.00 1.90
5771 6627 3.181390 AGCTACTCCCTCCATCCCATAAT 60.181 47.826 0.00 0.00 0.00 1.28
5772 6628 4.047265 AGCTACTCCCTCCATCCCATAATA 59.953 45.833 0.00 0.00 0.00 0.98
5773 6629 4.971924 GCTACTCCCTCCATCCCATAATAT 59.028 45.833 0.00 0.00 0.00 1.28
5774 6630 6.067600 AGCTACTCCCTCCATCCCATAATATA 60.068 42.308 0.00 0.00 0.00 0.86
5775 6631 6.615726 GCTACTCCCTCCATCCCATAATATAA 59.384 42.308 0.00 0.00 0.00 0.98
5776 6632 7.202047 GCTACTCCCTCCATCCCATAATATAAG 60.202 44.444 0.00 0.00 0.00 1.73
5777 6633 6.826727 ACTCCCTCCATCCCATAATATAAGA 58.173 40.000 0.00 0.00 0.00 2.10
5778 6634 6.905776 ACTCCCTCCATCCCATAATATAAGAG 59.094 42.308 0.00 0.00 0.00 2.85
5779 6635 5.667626 TCCCTCCATCCCATAATATAAGAGC 59.332 44.000 0.00 0.00 0.00 4.09
5780 6636 5.453903 CCCTCCATCCCATAATATAAGAGCG 60.454 48.000 0.00 0.00 0.00 5.03
5781 6637 5.129485 CCTCCATCCCATAATATAAGAGCGT 59.871 44.000 0.00 0.00 0.00 5.07
5782 6638 6.352222 CCTCCATCCCATAATATAAGAGCGTT 60.352 42.308 0.00 0.00 0.00 4.84
5783 6639 7.016153 TCCATCCCATAATATAAGAGCGTTT 57.984 36.000 0.00 0.00 0.00 3.60
5784 6640 7.458397 TCCATCCCATAATATAAGAGCGTTTT 58.542 34.615 0.00 0.00 0.00 2.43
5785 6641 7.942341 TCCATCCCATAATATAAGAGCGTTTTT 59.058 33.333 0.00 0.00 0.00 1.94
5786 6642 8.237267 CCATCCCATAATATAAGAGCGTTTTTC 58.763 37.037 0.00 0.00 0.00 2.29
5787 6643 8.783093 CATCCCATAATATAAGAGCGTTTTTCA 58.217 33.333 0.00 0.00 0.00 2.69
5788 6644 8.149973 TCCCATAATATAAGAGCGTTTTTCAC 57.850 34.615 0.00 0.00 0.00 3.18
5789 6645 7.771361 TCCCATAATATAAGAGCGTTTTTCACA 59.229 33.333 0.00 0.00 0.00 3.58
5790 6646 7.855904 CCCATAATATAAGAGCGTTTTTCACAC 59.144 37.037 0.00 0.00 0.00 3.82
5791 6647 8.612619 CCATAATATAAGAGCGTTTTTCACACT 58.387 33.333 0.00 0.00 0.00 3.55
5794 6650 8.773404 AATATAAGAGCGTTTTTCACACTAGT 57.227 30.769 0.00 0.00 0.00 2.57
5796 6652 3.793559 AGAGCGTTTTTCACACTAGTGT 58.206 40.909 22.95 22.95 46.01 3.55
5797 6653 4.189231 AGAGCGTTTTTCACACTAGTGTT 58.811 39.130 25.89 8.28 46.01 3.32
5798 6654 4.034048 AGAGCGTTTTTCACACTAGTGTTG 59.966 41.667 25.89 19.61 46.01 3.33
5799 6655 3.687698 AGCGTTTTTCACACTAGTGTTGT 59.312 39.130 25.89 1.77 46.01 3.32
5800 6656 3.783943 GCGTTTTTCACACTAGTGTTGTG 59.216 43.478 25.89 15.02 46.01 3.33
5809 6665 4.965062 ACACTAGTGTTGTGTGAAAAACG 58.035 39.130 22.95 0.00 45.57 3.60
5810 6666 3.783943 CACTAGTGTTGTGTGAAAAACGC 59.216 43.478 15.06 0.00 39.89 4.84
5811 6667 3.687698 ACTAGTGTTGTGTGAAAAACGCT 59.312 39.130 0.00 6.80 46.09 5.07
5812 6668 3.131240 AGTGTTGTGTGAAAAACGCTC 57.869 42.857 0.00 0.00 41.98 5.03
5813 6669 2.747446 AGTGTTGTGTGAAAAACGCTCT 59.253 40.909 0.00 0.00 41.98 4.09
5814 6670 3.190535 AGTGTTGTGTGAAAAACGCTCTT 59.809 39.130 0.00 0.00 41.98 2.85
5815 6671 4.393680 AGTGTTGTGTGAAAAACGCTCTTA 59.606 37.500 0.00 0.00 41.98 2.10
5816 6672 5.065988 AGTGTTGTGTGAAAAACGCTCTTAT 59.934 36.000 0.00 0.00 41.98 1.73
5817 6673 6.259167 AGTGTTGTGTGAAAAACGCTCTTATA 59.741 34.615 0.00 0.00 41.98 0.98
5818 6674 7.041372 AGTGTTGTGTGAAAAACGCTCTTATAT 60.041 33.333 0.00 0.00 41.98 0.86
5819 6675 7.589954 GTGTTGTGTGAAAAACGCTCTTATATT 59.410 33.333 0.00 0.00 40.15 1.28
5820 6676 8.775527 TGTTGTGTGAAAAACGCTCTTATATTA 58.224 29.630 0.00 0.00 40.15 0.98
5821 6677 9.769093 GTTGTGTGAAAAACGCTCTTATATTAT 57.231 29.630 0.00 0.00 40.15 1.28
5822 6678 9.767684 TTGTGTGAAAAACGCTCTTATATTATG 57.232 29.630 0.00 0.00 40.15 1.90
5823 6679 8.394877 TGTGTGAAAAACGCTCTTATATTATGG 58.605 33.333 0.00 0.00 40.15 2.74
5824 6680 7.855904 GTGTGAAAAACGCTCTTATATTATGGG 59.144 37.037 0.00 0.00 36.31 4.00
5825 6681 7.771361 TGTGAAAAACGCTCTTATATTATGGGA 59.229 33.333 0.00 0.00 0.00 4.37
5826 6682 8.068380 GTGAAAAACGCTCTTATATTATGGGAC 58.932 37.037 0.00 0.00 0.00 4.46
5827 6683 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
5828 6684 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
5829 6685 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
5830 6686 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
5831 6687 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
5832 6688 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
5833 6689 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
5834 6690 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
5835 6691 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
5836 6692 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
5837 6693 2.077687 TTATGGGACGGAGGGAGTAC 57.922 55.000 0.00 0.00 0.00 2.73
5848 6704 2.829720 GGAGGGAGTACATACACACACA 59.170 50.000 0.00 0.00 0.00 3.72
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.234972 GCCAGTACGTGTACTTTTACAGTTT 59.765 40.000 9.88 0.00 43.35 2.66
1 2 4.746611 GCCAGTACGTGTACTTTTACAGTT 59.253 41.667 9.88 0.00 43.35 3.16
2 3 4.038402 AGCCAGTACGTGTACTTTTACAGT 59.962 41.667 9.88 0.00 43.35 3.55
3 4 4.384846 CAGCCAGTACGTGTACTTTTACAG 59.615 45.833 9.88 0.00 43.35 2.74
4 5 4.300803 CAGCCAGTACGTGTACTTTTACA 58.699 43.478 9.88 0.00 43.35 2.41
5 6 3.676646 CCAGCCAGTACGTGTACTTTTAC 59.323 47.826 9.88 1.19 43.35 2.01
17 18 3.065371 GCATTATTGTGACCAGCCAGTAC 59.935 47.826 0.00 0.00 0.00 2.73
21 22 1.093972 CGCATTATTGTGACCAGCCA 58.906 50.000 0.00 0.00 35.26 4.75
42 43 1.604378 CAGATTTGCCCTCTCCGGT 59.396 57.895 0.00 0.00 0.00 5.28
181 182 1.081556 TGTGTCGTGTGTGTGACAGC 61.082 55.000 0.00 0.00 45.08 4.40
301 310 3.299190 GGGGATCGAGGAGGCGAG 61.299 72.222 0.00 0.00 44.26 5.03
302 311 3.793957 GAGGGGATCGAGGAGGCGA 62.794 68.421 0.00 0.00 45.22 5.54
303 312 3.299190 GAGGGGATCGAGGAGGCG 61.299 72.222 0.00 0.00 0.00 5.52
478 487 3.574780 GCGGTGAGCTAAACCACC 58.425 61.111 16.28 13.95 46.99 4.61
488 497 1.723870 GCCATAGCAAAGCGGTGAG 59.276 57.895 0.00 0.00 39.53 3.51
518 527 5.344066 ACAGACTACAGACGCAATCTAATG 58.656 41.667 0.00 0.00 35.15 1.90
519 528 5.584253 ACAGACTACAGACGCAATCTAAT 57.416 39.130 0.00 0.00 35.15 1.73
525 534 1.875514 ACGTACAGACTACAGACGCAA 59.124 47.619 0.00 0.00 37.02 4.85
529 538 3.126000 GGGTACACGTACAGACTACAGAC 59.874 52.174 9.43 0.00 37.78 3.51
530 539 3.008375 AGGGTACACGTACAGACTACAGA 59.992 47.826 9.43 0.00 37.78 3.41
532 541 3.076621 CAGGGTACACGTACAGACTACA 58.923 50.000 9.43 0.00 37.78 2.74
533 542 2.159462 GCAGGGTACACGTACAGACTAC 60.159 54.545 9.43 0.00 37.78 2.73
534 543 2.086869 GCAGGGTACACGTACAGACTA 58.913 52.381 9.43 0.00 37.78 2.59
535 544 0.886563 GCAGGGTACACGTACAGACT 59.113 55.000 9.43 2.00 37.78 3.24
567 576 2.203070 AATCGGATCTGTGGGCGC 60.203 61.111 0.00 0.00 0.00 6.53
587 596 1.666209 CCCATTCCCTTGCGCGAATT 61.666 55.000 12.10 0.00 0.00 2.17
591 600 4.794648 TCCCCATTCCCTTGCGCG 62.795 66.667 0.00 0.00 0.00 6.86
593 602 0.461135 CAAATCCCCATTCCCTTGCG 59.539 55.000 0.00 0.00 0.00 4.85
596 605 0.417035 TGGCAAATCCCCATTCCCTT 59.583 50.000 0.00 0.00 0.00 3.95
597 606 0.031817 CTGGCAAATCCCCATTCCCT 60.032 55.000 0.00 0.00 0.00 4.20
598 607 0.032217 TCTGGCAAATCCCCATTCCC 60.032 55.000 0.00 0.00 0.00 3.97
619 628 4.241681 GCGTGCATTAATGAAGGGAAAAA 58.758 39.130 19.73 0.00 0.00 1.94
666 675 1.973515 TCTCCATCTATCGGCAAGCAT 59.026 47.619 0.00 0.00 0.00 3.79
681 690 3.387374 TGAAAAAGGCAAGCAAATCTCCA 59.613 39.130 0.00 0.00 0.00 3.86
744 759 4.533222 CAGAAAAGCGTTGTTTCCGTATT 58.467 39.130 4.62 0.00 35.92 1.89
806 821 4.836825 CACCAGATCTAAAGAAGGAAGCA 58.163 43.478 0.00 0.00 0.00 3.91
844 859 8.548880 ACCCAGAGCAGTAGAAATTTATACTA 57.451 34.615 21.70 3.44 33.78 1.82
1305 1321 5.446875 CGACTCATCTGGAACATTGTCATTG 60.447 44.000 0.00 0.00 38.20 2.82
1414 1430 1.978580 GTCCTCCTTCTCCTTTGGTGA 59.021 52.381 0.00 0.00 0.00 4.02
1499 1515 0.994247 ATCACCAGATTGCCCAGTCA 59.006 50.000 0.00 0.00 0.00 3.41
1532 1548 6.448207 TTTCAACATCATTGTCAGTTGTGA 57.552 33.333 13.81 0.00 41.43 3.58
1713 1753 4.291783 CATTCTCGGTATTCGACTCCTTC 58.708 47.826 0.00 0.00 43.74 3.46
1848 1888 3.877508 GGCAAGGTATGTAATCTGTCACC 59.122 47.826 0.00 0.00 0.00 4.02
1896 1936 6.624352 TCATAATGCTTGGTAGAATGAAGC 57.376 37.500 0.00 0.00 42.07 3.86
2035 2075 9.832445 ATTACTCGGTGTTATAGAAACATCATT 57.168 29.630 2.43 0.00 30.94 2.57
2046 2086 6.537301 CCAGCAAAAGATTACTCGGTGTTATA 59.463 38.462 0.00 0.00 0.00 0.98
2048 2088 4.693566 CCAGCAAAAGATTACTCGGTGTTA 59.306 41.667 0.00 0.00 0.00 2.41
2054 2094 4.452455 AGTTGACCAGCAAAAGATTACTCG 59.548 41.667 0.00 0.00 38.44 4.18
2066 2106 2.951642 CAAAAGGAGAAGTTGACCAGCA 59.048 45.455 0.00 0.00 0.00 4.41
2068 2108 3.217626 AGCAAAAGGAGAAGTTGACCAG 58.782 45.455 0.00 0.00 0.00 4.00
2071 2111 7.871853 TGTTATAAGCAAAAGGAGAAGTTGAC 58.128 34.615 0.00 0.00 0.00 3.18
2093 2133 4.141959 ACCTGCAAAAATAGTGCACTTGTT 60.142 37.500 27.06 17.29 46.76 2.83
2095 2135 3.981211 ACCTGCAAAAATAGTGCACTTG 58.019 40.909 27.06 17.68 46.76 3.16
2098 2138 4.082245 ACCATACCTGCAAAAATAGTGCAC 60.082 41.667 9.40 9.40 46.76 4.57
2195 2235 0.329596 CTCCCCCAGGAAACAGAAGG 59.670 60.000 0.00 0.00 43.40 3.46
2213 2253 2.290577 GCCATTCTTGAACTGAGTCCCT 60.291 50.000 0.00 0.00 0.00 4.20
2283 2323 5.247337 TGGTGTGTGGAAGTGAGTCATAATA 59.753 40.000 0.00 0.00 0.00 0.98
2326 2368 6.308015 TGCCTTGATACTTAGGTATGTGTT 57.692 37.500 1.65 0.00 38.60 3.32
2348 2391 6.245115 TCAAGTGAGTGATAGCAACAATTG 57.755 37.500 17.30 17.30 38.60 2.32
2351 2394 4.756642 CCTTCAAGTGAGTGATAGCAACAA 59.243 41.667 0.00 0.00 0.00 2.83
2366 2409 3.290710 ACATGTGCAAACTCCTTCAAGT 58.709 40.909 0.00 0.00 0.00 3.16
2377 2420 1.955778 CAGTCCTGGAACATGTGCAAA 59.044 47.619 6.08 0.00 38.20 3.68
2445 2489 5.567623 GCATAGACTTCGGACACCATGATAT 60.568 44.000 0.00 0.00 0.00 1.63
2446 2490 4.262036 GCATAGACTTCGGACACCATGATA 60.262 45.833 0.00 0.00 0.00 2.15
2447 2491 3.493350 GCATAGACTTCGGACACCATGAT 60.493 47.826 0.00 0.00 0.00 2.45
2449 2493 2.205074 GCATAGACTTCGGACACCATG 58.795 52.381 0.00 0.00 0.00 3.66
2450 2494 1.831106 TGCATAGACTTCGGACACCAT 59.169 47.619 0.00 0.00 0.00 3.55
2451 2495 1.262417 TGCATAGACTTCGGACACCA 58.738 50.000 0.00 0.00 0.00 4.17
2452 2496 2.604046 ATGCATAGACTTCGGACACC 57.396 50.000 0.00 0.00 0.00 4.16
2453 2497 4.868171 TGTAAATGCATAGACTTCGGACAC 59.132 41.667 0.00 0.00 0.00 3.67
2454 2498 5.079689 TGTAAATGCATAGACTTCGGACA 57.920 39.130 0.00 0.00 0.00 4.02
2455 2499 5.559035 GCATGTAAATGCATAGACTTCGGAC 60.559 44.000 13.25 0.00 46.25 4.79
2456 2500 4.511454 GCATGTAAATGCATAGACTTCGGA 59.489 41.667 13.25 0.00 46.25 4.55
2457 2501 4.776743 GCATGTAAATGCATAGACTTCGG 58.223 43.478 13.25 0.00 46.25 4.30
2484 2533 6.110707 GGTAAAGCCTGCACATAGTAGTTTA 58.889 40.000 0.00 0.00 0.00 2.01
2539 2588 5.248640 ACTCCACAACCAACATCTAGAATG 58.751 41.667 0.00 0.00 0.00 2.67
2656 2705 3.574354 ATTGCTGGAATTCCTCTCTCC 57.426 47.619 24.73 7.64 36.82 3.71
2662 2711 4.450305 AGCTGATATTGCTGGAATTCCT 57.550 40.909 24.73 7.22 39.56 3.36
2752 2801 4.165043 ACCTTCAATGTGCCAAGGGACT 62.165 50.000 12.07 0.00 41.05 3.85
2795 2845 2.777459 ACCAGGAGATATCGAAGGGT 57.223 50.000 0.00 1.99 0.00 4.34
2796 2846 2.494073 GCTACCAGGAGATATCGAAGGG 59.506 54.545 0.00 1.36 0.00 3.95
2797 2847 3.426615 AGCTACCAGGAGATATCGAAGG 58.573 50.000 0.00 1.39 0.00 3.46
2798 2848 5.123186 CAGTAGCTACCAGGAGATATCGAAG 59.877 48.000 20.31 0.00 0.00 3.79
2805 2856 3.390175 ACACAGTAGCTACCAGGAGAT 57.610 47.619 20.31 0.00 0.00 2.75
2822 2947 9.472361 AAACCGTATTCATATCATACAGTACAC 57.528 33.333 0.00 0.00 0.00 2.90
2833 2958 8.495949 CCAGTTGTCATAAACCGTATTCATATC 58.504 37.037 0.00 0.00 0.00 1.63
2834 2959 7.990886 ACCAGTTGTCATAAACCGTATTCATAT 59.009 33.333 0.00 0.00 0.00 1.78
2844 2969 7.266922 TGAAAGTAACCAGTTGTCATAAACC 57.733 36.000 0.00 0.00 0.00 3.27
2990 3115 8.827177 ACGAGTGATATTAAAAGAAGTGTTCA 57.173 30.769 0.00 0.00 0.00 3.18
3020 3145 3.902261 TTGCAGCAATGTTCTGTACAG 57.098 42.857 17.17 17.17 40.83 2.74
3022 3147 6.122850 TGATATTGCAGCAATGTTCTGTAC 57.877 37.500 27.91 10.67 35.54 2.90
3031 3156 4.098349 ACGGTTCATTGATATTGCAGCAAT 59.902 37.500 23.96 23.96 43.99 3.56
3081 3206 6.406692 ACAGCTACTTGAACTGTTCTAGAA 57.593 37.500 29.57 13.34 41.78 2.10
3097 3222 2.618709 ACCAAAGCAAGTGAACAGCTAC 59.381 45.455 0.00 0.00 37.70 3.58
3119 3244 3.491447 GCAGCAACAGTTTTTCCTGATGT 60.491 43.478 0.00 0.00 37.51 3.06
3120 3245 3.054878 GCAGCAACAGTTTTTCCTGATG 58.945 45.455 0.00 0.00 38.04 3.07
3126 3251 2.358898 TCAGAGGCAGCAACAGTTTTTC 59.641 45.455 0.00 0.00 0.00 2.29
3129 3254 2.057137 TTCAGAGGCAGCAACAGTTT 57.943 45.000 0.00 0.00 0.00 2.66
3132 3257 0.809385 CCATTCAGAGGCAGCAACAG 59.191 55.000 0.00 0.00 0.00 3.16
3170 3295 3.135712 TGTGGATTGTGGTGTAGTGTTCT 59.864 43.478 0.00 0.00 0.00 3.01
3178 3303 1.211703 TCTGTGTGTGGATTGTGGTGT 59.788 47.619 0.00 0.00 0.00 4.16
3187 3312 5.227569 ACATGTATTTCTCTGTGTGTGGA 57.772 39.130 0.00 0.00 0.00 4.02
3193 3318 6.005583 ACAAGCAACATGTATTTCTCTGTG 57.994 37.500 0.00 0.00 0.00 3.66
3195 3320 7.584108 TGTTACAAGCAACATGTATTTCTCTG 58.416 34.615 0.00 0.00 33.55 3.35
3203 3328 6.540551 TGAACTTCTGTTACAAGCAACATGTA 59.459 34.615 0.00 0.00 37.75 2.29
3207 3332 5.888691 TTGAACTTCTGTTACAAGCAACA 57.111 34.783 0.00 0.00 36.39 3.33
3230 3355 9.125026 AGAACAATGAAAGAGAGTTTACAACAT 57.875 29.630 0.00 0.00 0.00 2.71
3248 3373 7.962918 CCTTCGTTATAGGTGAAAAGAACAATG 59.037 37.037 0.00 0.00 0.00 2.82
3260 3385 3.520290 TGTCAGCCTTCGTTATAGGTG 57.480 47.619 0.00 0.00 35.13 4.00
3261 3386 3.259876 TGTTGTCAGCCTTCGTTATAGGT 59.740 43.478 0.00 0.00 35.13 3.08
3262 3387 3.617263 GTGTTGTCAGCCTTCGTTATAGG 59.383 47.826 0.00 0.00 35.80 2.57
3263 3388 4.242475 TGTGTTGTCAGCCTTCGTTATAG 58.758 43.478 0.00 0.00 0.00 1.31
3264 3389 4.260139 TGTGTTGTCAGCCTTCGTTATA 57.740 40.909 0.00 0.00 0.00 0.98
3265 3390 3.120321 TGTGTTGTCAGCCTTCGTTAT 57.880 42.857 0.00 0.00 0.00 1.89
3267 3392 1.670811 CTTGTGTTGTCAGCCTTCGTT 59.329 47.619 0.00 0.00 0.00 3.85
3270 3395 1.002033 CAGCTTGTGTTGTCAGCCTTC 60.002 52.381 0.00 0.00 0.00 3.46
3272 3397 0.107017 ACAGCTTGTGTTGTCAGCCT 60.107 50.000 0.00 0.00 34.94 4.58
3330 3457 4.299586 TCATGAAGTTGGGCACATCTAA 57.700 40.909 0.00 0.00 0.00 2.10
3384 3511 1.951510 CAGTTGGTTCGCAGCATGT 59.048 52.632 0.00 0.00 39.31 3.21
3390 3517 0.814457 AACTTTGCAGTTGGTTCGCA 59.186 45.000 0.00 0.00 42.05 5.10
3391 3518 1.921243 AAACTTTGCAGTTGGTTCGC 58.079 45.000 0.00 0.00 42.89 4.70
3393 3520 5.006649 GGATGAAAAACTTTGCAGTTGGTTC 59.993 40.000 7.84 7.84 42.89 3.62
3417 3545 4.778579 AGATCTGGTTCACTTGGATGATG 58.221 43.478 0.00 0.00 0.00 3.07
3572 3700 7.040494 TGTCTTCTGATCTTTTCTCATAGCAG 58.960 38.462 0.00 0.00 0.00 4.24
3578 3706 4.564406 GGGCTGTCTTCTGATCTTTTCTCA 60.564 45.833 0.00 0.00 0.00 3.27
3764 3897 4.336713 GGCCATTTTGATCCTCTTACTGAC 59.663 45.833 0.00 0.00 0.00 3.51
4215 4350 1.174712 ACAATGGGCAGTGTGTCAGC 61.175 55.000 0.00 0.00 38.29 4.26
4316 4451 2.662006 TTGAGAAGAGATGGTCTGCG 57.338 50.000 0.00 0.00 35.63 5.18
4361 4496 4.310769 AGAAACTGAAATCACCGAGACAG 58.689 43.478 0.00 0.00 0.00 3.51
4375 4510 9.516546 TCAGTCTAGTAAGTATGAAGAAACTGA 57.483 33.333 0.00 0.00 0.00 3.41
4412 4786 7.492020 TGTTTCAAATTCTCCAAACAGTGAATG 59.508 33.333 0.00 0.00 34.56 2.67
4415 4789 6.522625 TGTTTCAAATTCTCCAAACAGTGA 57.477 33.333 0.00 0.00 34.56 3.41
4420 4794 7.706179 TGAGTTGATGTTTCAAATTCTCCAAAC 59.294 33.333 0.00 0.00 43.29 2.93
4428 4802 6.395426 TGAGCTGAGTTGATGTTTCAAATT 57.605 33.333 0.00 0.00 43.29 1.82
4432 4806 4.644498 TCATGAGCTGAGTTGATGTTTCA 58.356 39.130 0.00 0.00 0.00 2.69
4433 4807 5.814764 ATCATGAGCTGAGTTGATGTTTC 57.185 39.130 0.09 0.00 37.28 2.78
4434 4808 7.108194 TCTTATCATGAGCTGAGTTGATGTTT 58.892 34.615 0.09 0.00 37.28 2.83
4443 4817 8.883954 TCAAAGTTATCTTATCATGAGCTGAG 57.116 34.615 0.09 0.00 33.02 3.35
4461 4837 7.410120 AATGTTTCTTGGAGTTCTCAAAGTT 57.590 32.000 14.31 1.87 0.00 2.66
4462 4838 7.410120 AAATGTTTCTTGGAGTTCTCAAAGT 57.590 32.000 14.31 0.00 0.00 2.66
4463 4839 8.193438 AGAAAATGTTTCTTGGAGTTCTCAAAG 58.807 33.333 9.90 9.90 0.00 2.77
4511 4892 4.700692 GGCTTAAAACCCAAAGAGAGGTAG 59.299 45.833 0.00 0.00 34.45 3.18
4526 4907 5.354842 TTTTTCCGAAAAGGGGCTTAAAA 57.645 34.783 6.41 0.00 41.52 1.52
4553 4934 2.103042 GTGGCATGTGCGGAGAGAC 61.103 63.158 0.00 0.00 43.26 3.36
4556 4937 4.408821 GGGTGGCATGTGCGGAGA 62.409 66.667 0.00 0.00 43.26 3.71
4560 4941 1.153784 GAATTGGGTGGCATGTGCG 60.154 57.895 0.00 0.00 43.26 5.34
4575 4956 9.322769 ACCCACGAATAGTATAAAGATAGGAAT 57.677 33.333 0.00 0.00 0.00 3.01
4592 4973 4.690280 GCATGAATTGAAAAACCCACGAAT 59.310 37.500 0.00 0.00 0.00 3.34
4596 4977 5.121142 CAGATGCATGAATTGAAAAACCCAC 59.879 40.000 2.46 0.00 0.00 4.61
4604 4985 4.442332 GCCCATTCAGATGCATGAATTGAA 60.442 41.667 11.92 12.10 45.44 2.69
4619 5000 4.016444 GTCAAATACTTGAGGCCCATTCA 58.984 43.478 0.00 0.00 42.27 2.57
4641 5022 7.507616 AGGAAGTATATGAGAACCTTGTAGGAG 59.492 40.741 0.00 0.00 37.67 3.69
4656 5037 6.264744 TGAACTAGGAACGGAGGAAGTATATG 59.735 42.308 0.00 0.00 0.00 1.78
4657 5038 6.371278 TGAACTAGGAACGGAGGAAGTATAT 58.629 40.000 0.00 0.00 0.00 0.86
4662 5043 3.955650 TTGAACTAGGAACGGAGGAAG 57.044 47.619 0.00 0.00 0.00 3.46
4663 5044 4.903045 ATTTGAACTAGGAACGGAGGAA 57.097 40.909 0.00 0.00 0.00 3.36
4664 5045 4.903045 AATTTGAACTAGGAACGGAGGA 57.097 40.909 0.00 0.00 0.00 3.71
4665 5046 5.001232 TCAAATTTGAACTAGGAACGGAGG 58.999 41.667 18.45 0.00 33.55 4.30
4666 5047 6.554334 TTCAAATTTGAACTAGGAACGGAG 57.446 37.500 26.01 0.00 41.88 4.63
4678 5059 9.092876 GTGTCATGGTTTTAGTTCAAATTTGAA 57.907 29.630 26.01 26.01 44.31 2.69
4679 5060 8.474025 AGTGTCATGGTTTTAGTTCAAATTTGA 58.526 29.630 16.91 16.91 34.92 2.69
4680 5061 8.647143 AGTGTCATGGTTTTAGTTCAAATTTG 57.353 30.769 12.15 12.15 0.00 2.32
4686 5067 9.743057 CAAAATAAGTGTCATGGTTTTAGTTCA 57.257 29.630 0.00 0.00 0.00 3.18
4687 5068 9.959749 TCAAAATAAGTGTCATGGTTTTAGTTC 57.040 29.630 0.00 0.00 0.00 3.01
4692 5073 9.054922 CCATTTCAAAATAAGTGTCATGGTTTT 57.945 29.630 0.00 0.00 0.00 2.43
4693 5074 8.428063 TCCATTTCAAAATAAGTGTCATGGTTT 58.572 29.630 0.00 0.00 32.71 3.27
4694 5075 7.961351 TCCATTTCAAAATAAGTGTCATGGTT 58.039 30.769 0.00 0.00 32.71 3.67
4695 5076 7.309990 CCTCCATTTCAAAATAAGTGTCATGGT 60.310 37.037 0.00 0.00 32.71 3.55
4696 5077 7.037438 CCTCCATTTCAAAATAAGTGTCATGG 58.963 38.462 0.00 0.00 32.40 3.66
4697 5078 7.037438 CCCTCCATTTCAAAATAAGTGTCATG 58.963 38.462 0.00 0.00 0.00 3.07
4698 5079 6.953520 TCCCTCCATTTCAAAATAAGTGTCAT 59.046 34.615 0.00 0.00 0.00 3.06
4699 5080 6.310941 TCCCTCCATTTCAAAATAAGTGTCA 58.689 36.000 0.00 0.00 0.00 3.58
4700 5081 6.434340 ACTCCCTCCATTTCAAAATAAGTGTC 59.566 38.462 0.00 0.00 0.00 3.67
4701 5082 6.314917 ACTCCCTCCATTTCAAAATAAGTGT 58.685 36.000 0.00 0.00 0.00 3.55
4702 5083 6.840780 ACTCCCTCCATTTCAAAATAAGTG 57.159 37.500 0.00 0.00 0.00 3.16
4703 5084 8.116026 ACATACTCCCTCCATTTCAAAATAAGT 58.884 33.333 0.00 0.00 0.00 2.24
4704 5085 8.408601 CACATACTCCCTCCATTTCAAAATAAG 58.591 37.037 0.00 0.00 0.00 1.73
4705 5086 7.147915 GCACATACTCCCTCCATTTCAAAATAA 60.148 37.037 0.00 0.00 0.00 1.40
4706 5087 6.321181 GCACATACTCCCTCCATTTCAAAATA 59.679 38.462 0.00 0.00 0.00 1.40
4707 5088 5.127682 GCACATACTCCCTCCATTTCAAAAT 59.872 40.000 0.00 0.00 0.00 1.82
4708 5089 4.462483 GCACATACTCCCTCCATTTCAAAA 59.538 41.667 0.00 0.00 0.00 2.44
4709 5090 4.016444 GCACATACTCCCTCCATTTCAAA 58.984 43.478 0.00 0.00 0.00 2.69
4710 5091 3.620488 GCACATACTCCCTCCATTTCAA 58.380 45.455 0.00 0.00 0.00 2.69
4711 5092 2.092429 GGCACATACTCCCTCCATTTCA 60.092 50.000 0.00 0.00 0.00 2.69
4712 5093 2.092429 TGGCACATACTCCCTCCATTTC 60.092 50.000 0.00 0.00 0.00 2.17
4713 5094 1.922447 TGGCACATACTCCCTCCATTT 59.078 47.619 0.00 0.00 0.00 2.32
4714 5095 1.595311 TGGCACATACTCCCTCCATT 58.405 50.000 0.00 0.00 0.00 3.16
4715 5096 1.212935 GTTGGCACATACTCCCTCCAT 59.787 52.381 0.00 0.00 39.30 3.41
4716 5097 0.618458 GTTGGCACATACTCCCTCCA 59.382 55.000 0.00 0.00 39.30 3.86
4717 5098 0.618458 TGTTGGCACATACTCCCTCC 59.382 55.000 0.00 0.00 39.30 4.30
4718 5099 2.092968 TGATGTTGGCACATACTCCCTC 60.093 50.000 0.00 0.00 44.22 4.30
4719 5100 1.915489 TGATGTTGGCACATACTCCCT 59.085 47.619 0.00 0.00 44.22 4.20
4720 5101 2.418368 TGATGTTGGCACATACTCCC 57.582 50.000 0.00 0.00 44.22 4.30
4721 5102 4.989279 AAATGATGTTGGCACATACTCC 57.011 40.909 0.00 0.00 44.22 3.85
4722 5103 5.574055 CACAAAATGATGTTGGCACATACTC 59.426 40.000 0.00 0.00 44.22 2.59
4723 5104 5.472148 CACAAAATGATGTTGGCACATACT 58.528 37.500 0.00 0.00 44.22 2.12
4724 5105 4.091800 GCACAAAATGATGTTGGCACATAC 59.908 41.667 0.00 0.00 44.22 2.39
4725 5106 4.244066 GCACAAAATGATGTTGGCACATA 58.756 39.130 0.00 0.00 44.22 2.29
4727 5108 2.481854 GCACAAAATGATGTTGGCACA 58.518 42.857 0.00 0.00 37.31 4.57
4737 5118 2.286477 CGGTACAACACGCACAAAATGA 60.286 45.455 0.00 0.00 0.00 2.57
4741 5122 0.743701 ACCGGTACAACACGCACAAA 60.744 50.000 4.49 0.00 0.00 2.83
4742 5123 0.743701 AACCGGTACAACACGCACAA 60.744 50.000 8.00 0.00 0.00 3.33
4743 5124 0.743701 AAACCGGTACAACACGCACA 60.744 50.000 8.00 0.00 0.00 4.57
4744 5125 0.316360 CAAACCGGTACAACACGCAC 60.316 55.000 8.00 0.00 0.00 5.34
4751 5132 3.741249 TCAGTTATGCAAACCGGTACAA 58.259 40.909 8.00 0.00 0.00 2.41
4753 5134 4.493545 CGATTCAGTTATGCAAACCGGTAC 60.494 45.833 8.00 0.00 0.00 3.34
4760 5164 5.390885 GCTTGAGACGATTCAGTTATGCAAA 60.391 40.000 0.00 0.00 0.00 3.68
5023 5427 5.563751 CGGTTTGTCTTGAATGTATGTTTCG 59.436 40.000 0.00 0.00 0.00 3.46
5067 5472 9.595823 GCCAAAATTCAGTCTAGTGTAATAGTA 57.404 33.333 0.00 0.00 0.00 1.82
5068 5473 7.553044 GGCCAAAATTCAGTCTAGTGTAATAGT 59.447 37.037 0.00 0.00 0.00 2.12
5069 5474 7.012421 GGGCCAAAATTCAGTCTAGTGTAATAG 59.988 40.741 4.39 0.00 0.00 1.73
5225 5656 2.679082 ACCTATCGGCTTCCAGTACAT 58.321 47.619 0.00 0.00 0.00 2.29
5256 5687 3.790437 CTGATGCCACCCTCCGCT 61.790 66.667 0.00 0.00 0.00 5.52
5257 5688 3.628646 AACTGATGCCACCCTCCGC 62.629 63.158 0.00 0.00 0.00 5.54
5278 5709 3.756117 ACCAGAAGTGAGGTTTTCCATC 58.244 45.455 0.00 0.00 43.73 3.51
5280 5711 4.781775 TTACCAGAAGTGAGGTTTTCCA 57.218 40.909 0.00 0.00 43.73 3.53
5315 5746 4.389374 ACATCACGAATTCAAGGACAACT 58.611 39.130 6.22 0.00 0.00 3.16
5316 5747 4.213270 TGACATCACGAATTCAAGGACAAC 59.787 41.667 6.22 0.00 0.00 3.32
5317 5748 4.213270 GTGACATCACGAATTCAAGGACAA 59.787 41.667 6.22 0.00 37.10 3.18
5319 5750 4.327854 GTGACATCACGAATTCAAGGAC 57.672 45.455 6.22 0.00 37.10 3.85
5341 5772 0.528017 TCAGCTGCTCCACTAACTCG 59.472 55.000 9.47 0.00 0.00 4.18
5342 5773 1.821753 TCTCAGCTGCTCCACTAACTC 59.178 52.381 9.47 0.00 0.00 3.01
5343 5774 1.930251 TCTCAGCTGCTCCACTAACT 58.070 50.000 9.47 0.00 0.00 2.24
5394 5919 2.593978 CCAGTCCCCAGGCATCTG 59.406 66.667 0.00 0.00 40.59 2.90
5422 6237 4.905429 TGTAAGTGTGTGGCAGATGTAAT 58.095 39.130 0.00 0.00 0.00 1.89
5428 6243 1.808512 CGGTTGTAAGTGTGTGGCAGA 60.809 52.381 0.00 0.00 0.00 4.26
5431 6246 0.306533 CACGGTTGTAAGTGTGTGGC 59.693 55.000 0.00 0.00 33.97 5.01
5432 6247 0.941542 CCACGGTTGTAAGTGTGTGG 59.058 55.000 0.00 0.00 40.68 4.17
5445 6260 3.941188 CTGACAGTGGGCCACGGT 61.941 66.667 37.01 37.01 44.51 4.83
5506 6351 1.839424 TCCGATGAGAGTGAGCAAGA 58.161 50.000 0.00 0.00 0.00 3.02
5555 6404 2.504681 CGAAATTGTGCAGGCGGC 60.505 61.111 0.00 0.00 45.13 6.53
5556 6405 1.154225 GACGAAATTGTGCAGGCGG 60.154 57.895 0.00 0.00 0.00 6.13
5557 6406 0.453282 CTGACGAAATTGTGCAGGCG 60.453 55.000 0.00 0.00 0.00 5.52
5558 6407 0.593128 ACTGACGAAATTGTGCAGGC 59.407 50.000 0.00 0.00 0.00 4.85
5559 6408 4.219033 GTTAACTGACGAAATTGTGCAGG 58.781 43.478 0.00 0.00 0.00 4.85
5561 6410 4.884458 TGTTAACTGACGAAATTGTGCA 57.116 36.364 7.22 0.00 0.00 4.57
5563 6412 7.351981 TGAAGATGTTAACTGACGAAATTGTG 58.648 34.615 7.22 0.00 0.00 3.33
5564 6413 7.226720 ACTGAAGATGTTAACTGACGAAATTGT 59.773 33.333 7.22 0.00 0.00 2.71
5567 6420 7.116948 CAGACTGAAGATGTTAACTGACGAAAT 59.883 37.037 7.22 0.00 0.00 2.17
5595 6448 1.107945 GGAACGAGGAGAAGAGGAGG 58.892 60.000 0.00 0.00 0.00 4.30
5690 6546 1.278413 GGAACGGAGGGAGTAGCTTTT 59.722 52.381 0.00 0.00 0.00 2.27
5701 6557 5.103000 CGCTCTTATATTATGGAACGGAGG 58.897 45.833 0.00 0.00 0.00 4.30
5702 6558 5.710984 ACGCTCTTATATTATGGAACGGAG 58.289 41.667 0.00 0.00 0.00 4.63
5703 6559 5.717078 ACGCTCTTATATTATGGAACGGA 57.283 39.130 0.00 0.00 0.00 4.69
5704 6560 6.780706 AAACGCTCTTATATTATGGAACGG 57.219 37.500 0.00 0.00 0.00 4.44
5705 6561 8.332464 TGAAAAACGCTCTTATATTATGGAACG 58.668 33.333 0.00 0.00 0.00 3.95
5706 6562 9.434559 GTGAAAAACGCTCTTATATTATGGAAC 57.565 33.333 0.00 0.00 0.00 3.62
5707 6563 9.168451 TGTGAAAAACGCTCTTATATTATGGAA 57.832 29.630 0.00 0.00 0.00 3.53
5708 6564 8.609176 GTGTGAAAAACGCTCTTATATTATGGA 58.391 33.333 0.00 0.00 36.31 3.41
5709 6565 8.612619 AGTGTGAAAAACGCTCTTATATTATGG 58.387 33.333 0.00 0.00 46.98 2.74
5712 6568 9.642327 TGTAGTGTGAAAAACGCTCTTATATTA 57.358 29.630 0.00 0.00 46.98 0.98
5713 6569 8.440833 GTGTAGTGTGAAAAACGCTCTTATATT 58.559 33.333 0.00 0.00 46.98 1.28
5714 6570 7.817962 AGTGTAGTGTGAAAAACGCTCTTATAT 59.182 33.333 0.00 0.00 46.98 0.86
5715 6571 7.149973 AGTGTAGTGTGAAAAACGCTCTTATA 58.850 34.615 0.00 0.00 46.98 0.98
5716 6572 5.989777 AGTGTAGTGTGAAAAACGCTCTTAT 59.010 36.000 0.00 0.00 46.98 1.73
5717 6573 5.353938 AGTGTAGTGTGAAAAACGCTCTTA 58.646 37.500 0.00 0.00 46.98 2.10
5718 6574 4.189231 AGTGTAGTGTGAAAAACGCTCTT 58.811 39.130 0.00 0.00 46.98 2.85
5719 6575 3.793559 AGTGTAGTGTGAAAAACGCTCT 58.206 40.909 0.00 0.00 46.98 4.09
5720 6576 4.980434 TCTAGTGTAGTGTGAAAAACGCTC 59.020 41.667 0.00 0.00 46.98 5.03
5722 6578 4.505191 TGTCTAGTGTAGTGTGAAAAACGC 59.495 41.667 0.00 0.00 39.75 4.84
5723 6579 6.578020 TTGTCTAGTGTAGTGTGAAAAACG 57.422 37.500 0.00 0.00 0.00 3.60
5724 6580 9.274065 CTTTTTGTCTAGTGTAGTGTGAAAAAC 57.726 33.333 0.00 0.00 0.00 2.43
5725 6581 7.966204 GCTTTTTGTCTAGTGTAGTGTGAAAAA 59.034 33.333 0.00 0.00 0.00 1.94
5726 6582 7.335924 AGCTTTTTGTCTAGTGTAGTGTGAAAA 59.664 33.333 0.00 0.00 0.00 2.29
5727 6583 6.821665 AGCTTTTTGTCTAGTGTAGTGTGAAA 59.178 34.615 0.00 0.00 0.00 2.69
5728 6584 6.346096 AGCTTTTTGTCTAGTGTAGTGTGAA 58.654 36.000 0.00 0.00 0.00 3.18
5729 6585 5.914033 AGCTTTTTGTCTAGTGTAGTGTGA 58.086 37.500 0.00 0.00 0.00 3.58
5730 6586 6.924060 AGTAGCTTTTTGTCTAGTGTAGTGTG 59.076 38.462 0.00 0.00 0.00 3.82
5731 6587 7.052142 AGTAGCTTTTTGTCTAGTGTAGTGT 57.948 36.000 0.00 0.00 0.00 3.55
5732 6588 6.586844 GGAGTAGCTTTTTGTCTAGTGTAGTG 59.413 42.308 0.00 0.00 0.00 2.74
5733 6589 6.295180 GGGAGTAGCTTTTTGTCTAGTGTAGT 60.295 42.308 0.00 0.00 0.00 2.73
5734 6590 6.071278 AGGGAGTAGCTTTTTGTCTAGTGTAG 60.071 42.308 0.00 0.00 0.00 2.74
5735 6591 5.778750 AGGGAGTAGCTTTTTGTCTAGTGTA 59.221 40.000 0.00 0.00 0.00 2.90
5736 6592 4.593634 AGGGAGTAGCTTTTTGTCTAGTGT 59.406 41.667 0.00 0.00 0.00 3.55
5737 6593 5.153950 AGGGAGTAGCTTTTTGTCTAGTG 57.846 43.478 0.00 0.00 0.00 2.74
5738 6594 4.223255 GGAGGGAGTAGCTTTTTGTCTAGT 59.777 45.833 0.00 0.00 0.00 2.57
5739 6595 4.223032 TGGAGGGAGTAGCTTTTTGTCTAG 59.777 45.833 0.00 0.00 0.00 2.43
5740 6596 4.164981 TGGAGGGAGTAGCTTTTTGTCTA 58.835 43.478 0.00 0.00 0.00 2.59
5741 6597 2.979678 TGGAGGGAGTAGCTTTTTGTCT 59.020 45.455 0.00 0.00 0.00 3.41
5742 6598 3.418684 TGGAGGGAGTAGCTTTTTGTC 57.581 47.619 0.00 0.00 0.00 3.18
5743 6599 3.308473 GGATGGAGGGAGTAGCTTTTTGT 60.308 47.826 0.00 0.00 0.00 2.83
5744 6600 3.282885 GGATGGAGGGAGTAGCTTTTTG 58.717 50.000 0.00 0.00 0.00 2.44
5745 6601 2.242452 GGGATGGAGGGAGTAGCTTTTT 59.758 50.000 0.00 0.00 0.00 1.94
5746 6602 1.847088 GGGATGGAGGGAGTAGCTTTT 59.153 52.381 0.00 0.00 0.00 2.27
5747 6603 1.274416 TGGGATGGAGGGAGTAGCTTT 60.274 52.381 0.00 0.00 0.00 3.51
5748 6604 0.343372 TGGGATGGAGGGAGTAGCTT 59.657 55.000 0.00 0.00 0.00 3.74
5749 6605 0.570218 ATGGGATGGAGGGAGTAGCT 59.430 55.000 0.00 0.00 0.00 3.32
5750 6606 2.327325 TATGGGATGGAGGGAGTAGC 57.673 55.000 0.00 0.00 0.00 3.58
5751 6607 8.068110 TCTTATATTATGGGATGGAGGGAGTAG 58.932 40.741 0.00 0.00 0.00 2.57
5752 6608 7.961940 TCTTATATTATGGGATGGAGGGAGTA 58.038 38.462 0.00 0.00 0.00 2.59
5753 6609 6.826727 TCTTATATTATGGGATGGAGGGAGT 58.173 40.000 0.00 0.00 0.00 3.85
5754 6610 6.183361 GCTCTTATATTATGGGATGGAGGGAG 60.183 46.154 0.00 0.00 0.00 4.30
5755 6611 5.667626 GCTCTTATATTATGGGATGGAGGGA 59.332 44.000 0.00 0.00 0.00 4.20
5756 6612 5.453903 CGCTCTTATATTATGGGATGGAGGG 60.454 48.000 0.00 0.00 0.00 4.30
5757 6613 5.129485 ACGCTCTTATATTATGGGATGGAGG 59.871 44.000 0.00 0.00 0.00 4.30
5758 6614 6.227298 ACGCTCTTATATTATGGGATGGAG 57.773 41.667 0.00 0.00 0.00 3.86
5759 6615 6.620877 AACGCTCTTATATTATGGGATGGA 57.379 37.500 0.00 0.00 0.00 3.41
5760 6616 7.687941 AAAACGCTCTTATATTATGGGATGG 57.312 36.000 0.00 0.00 0.00 3.51
5761 6617 8.783093 TGAAAAACGCTCTTATATTATGGGATG 58.217 33.333 0.00 0.00 0.00 3.51
5762 6618 8.784043 GTGAAAAACGCTCTTATATTATGGGAT 58.216 33.333 0.00 0.00 0.00 3.85
5763 6619 7.771361 TGTGAAAAACGCTCTTATATTATGGGA 59.229 33.333 0.00 0.00 0.00 4.37
5764 6620 7.855904 GTGTGAAAAACGCTCTTATATTATGGG 59.144 37.037 0.00 0.00 36.31 4.00
5765 6621 8.612619 AGTGTGAAAAACGCTCTTATATTATGG 58.387 33.333 0.00 0.00 46.98 2.74
5768 6624 9.865321 ACTAGTGTGAAAAACGCTCTTATATTA 57.135 29.630 0.00 0.00 46.98 0.98
5769 6625 8.656849 CACTAGTGTGAAAAACGCTCTTATATT 58.343 33.333 15.06 0.00 46.98 1.28
5770 6626 7.817962 ACACTAGTGTGAAAAACGCTCTTATAT 59.182 33.333 27.41 0.00 46.98 0.86
5771 6627 7.149973 ACACTAGTGTGAAAAACGCTCTTATA 58.850 34.615 27.41 0.00 46.98 0.98
5772 6628 5.989777 ACACTAGTGTGAAAAACGCTCTTAT 59.010 36.000 27.41 0.00 46.98 1.73
5773 6629 5.353938 ACACTAGTGTGAAAAACGCTCTTA 58.646 37.500 27.41 0.00 46.98 2.10
5774 6630 4.189231 ACACTAGTGTGAAAAACGCTCTT 58.811 39.130 27.41 0.00 46.98 2.85
5775 6631 3.793559 ACACTAGTGTGAAAAACGCTCT 58.206 40.909 27.41 0.00 46.98 4.09
5776 6632 4.201783 ACAACACTAGTGTGAAAAACGCTC 60.202 41.667 28.55 0.00 46.98 5.03
5778 6634 3.783943 CACAACACTAGTGTGAAAAACGC 59.216 43.478 28.55 0.00 46.55 4.84
5788 6644 3.783943 GCGTTTTTCACACAACACTAGTG 59.216 43.478 21.44 21.44 42.56 2.74
5789 6645 3.687698 AGCGTTTTTCACACAACACTAGT 59.312 39.130 0.00 0.00 0.00 2.57
5790 6646 4.034048 AGAGCGTTTTTCACACAACACTAG 59.966 41.667 0.00 0.00 0.00 2.57
5791 6647 3.936453 AGAGCGTTTTTCACACAACACTA 59.064 39.130 0.00 0.00 0.00 2.74
5792 6648 2.747446 AGAGCGTTTTTCACACAACACT 59.253 40.909 0.00 0.00 0.00 3.55
5793 6649 3.131240 AGAGCGTTTTTCACACAACAC 57.869 42.857 0.00 0.00 0.00 3.32
5794 6650 3.840890 AAGAGCGTTTTTCACACAACA 57.159 38.095 0.00 0.00 0.00 3.33
5795 6651 9.769093 ATAATATAAGAGCGTTTTTCACACAAC 57.231 29.630 0.00 0.00 0.00 3.32
5796 6652 9.767684 CATAATATAAGAGCGTTTTTCACACAA 57.232 29.630 0.00 0.00 0.00 3.33
5797 6653 8.394877 CCATAATATAAGAGCGTTTTTCACACA 58.605 33.333 0.00 0.00 0.00 3.72
5798 6654 7.855904 CCCATAATATAAGAGCGTTTTTCACAC 59.144 37.037 0.00 0.00 0.00 3.82
5799 6655 7.771361 TCCCATAATATAAGAGCGTTTTTCACA 59.229 33.333 0.00 0.00 0.00 3.58
5800 6656 8.068380 GTCCCATAATATAAGAGCGTTTTTCAC 58.932 37.037 0.00 0.00 0.00 3.18
5801 6657 7.042321 CGTCCCATAATATAAGAGCGTTTTTCA 60.042 37.037 0.00 0.00 0.00 2.69
5802 6658 7.288672 CGTCCCATAATATAAGAGCGTTTTTC 58.711 38.462 0.00 0.00 0.00 2.29
5803 6659 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
5804 6660 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
5805 6661 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
5806 6662 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
5807 6663 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
5808 6664 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
5809 6665 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
5810 6666 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
5811 6667 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
5812 6668 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
5813 6669 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
5814 6670 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
5815 6671 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
5816 6672 3.140707 TGTACTCCCTCCGTCCCATAATA 59.859 47.826 0.00 0.00 0.00 0.98
5817 6673 2.090943 TGTACTCCCTCCGTCCCATAAT 60.091 50.000 0.00 0.00 0.00 1.28
5818 6674 1.288633 TGTACTCCCTCCGTCCCATAA 59.711 52.381 0.00 0.00 0.00 1.90
5819 6675 0.928505 TGTACTCCCTCCGTCCCATA 59.071 55.000 0.00 0.00 0.00 2.74
5820 6676 0.264955 ATGTACTCCCTCCGTCCCAT 59.735 55.000 0.00 0.00 0.00 4.00
5821 6677 0.928505 TATGTACTCCCTCCGTCCCA 59.071 55.000 0.00 0.00 0.00 4.37
5822 6678 1.326328 GTATGTACTCCCTCCGTCCC 58.674 60.000 0.00 0.00 0.00 4.46
5823 6679 1.680207 GTGTATGTACTCCCTCCGTCC 59.320 57.143 0.00 0.00 0.00 4.79
5824 6680 2.098770 GTGTGTATGTACTCCCTCCGTC 59.901 54.545 0.00 0.00 0.00 4.79
5825 6681 2.097825 GTGTGTATGTACTCCCTCCGT 58.902 52.381 0.00 0.00 0.00 4.69
5826 6682 2.097036 TGTGTGTATGTACTCCCTCCG 58.903 52.381 0.00 0.00 0.00 4.63
5827 6683 2.829720 TGTGTGTGTATGTACTCCCTCC 59.170 50.000 0.00 0.00 0.00 4.30
5828 6684 4.081642 ACATGTGTGTGTATGTACTCCCTC 60.082 45.833 0.00 0.00 37.14 4.30
5829 6685 3.838317 ACATGTGTGTGTATGTACTCCCT 59.162 43.478 0.00 0.00 37.14 4.20
5830 6686 4.202245 ACATGTGTGTGTATGTACTCCC 57.798 45.455 0.00 0.00 37.14 4.30
5848 6704 3.493350 GCCACGTCCTGAATATCTCACAT 60.493 47.826 0.00 0.00 0.00 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.