Multiple sequence alignment - TraesCS3D01G400300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G400300 chr3D 100.000 3715 0 0 1 3715 515233102 515229388 0.000000e+00 6861.0
1 TraesCS3D01G400300 chr3D 98.261 230 4 0 3486 3715 589558081 589558310 1.610000e-108 403.0
2 TraesCS3D01G400300 chr3D 91.892 74 6 0 2413 2486 382753627 382753554 1.830000e-18 104.0
3 TraesCS3D01G400300 chr3D 98.077 52 1 0 2413 2464 382806488 382806437 1.420000e-14 91.6
4 TraesCS3D01G400300 chr3A 94.099 1593 52 6 1215 2778 649773745 649772166 0.000000e+00 2383.0
5 TraesCS3D01G400300 chr3A 92.459 305 14 7 923 1218 649774196 649773892 9.530000e-116 427.0
6 TraesCS3D01G400300 chr3A 91.983 237 13 4 605 841 649774423 649774193 9.950000e-86 327.0
7 TraesCS3D01G400300 chr3A 93.333 75 5 0 2412 2486 506228319 506228245 1.090000e-20 111.0
8 TraesCS3D01G400300 chr3A 91.892 74 6 0 2413 2486 505723390 505723317 1.830000e-18 104.0
9 TraesCS3D01G400300 chr4A 90.806 707 36 9 2803 3498 58117569 58116881 0.000000e+00 918.0
10 TraesCS3D01G400300 chr4A 93.103 58 4 0 2414 2471 460239300 460239243 6.610000e-13 86.1
11 TraesCS3D01G400300 chr5A 91.475 610 51 1 1 609 312255208 312255817 0.000000e+00 837.0
12 TraesCS3D01G400300 chr5A 88.506 87 10 0 2782 2868 445014709 445014623 5.070000e-19 106.0
13 TraesCS3D01G400300 chr2B 91.447 608 49 2 1 607 474891610 474892215 0.000000e+00 832.0
14 TraesCS3D01G400300 chr6B 91.240 605 50 2 1 604 438405439 438406041 0.000000e+00 821.0
15 TraesCS3D01G400300 chr6B 90.625 608 54 3 1 607 229137796 229137191 0.000000e+00 804.0
16 TraesCS3D01G400300 chr2D 91.639 598 43 7 1 596 377512340 377511748 0.000000e+00 821.0
17 TraesCS3D01G400300 chr2D 97.391 230 6 0 3486 3715 31582487 31582258 3.480000e-105 392.0
18 TraesCS3D01G400300 chr2D 77.604 192 40 3 2779 2968 450913678 450913488 3.030000e-21 113.0
19 TraesCS3D01G400300 chr1A 90.969 609 51 2 1 607 292176541 292177147 0.000000e+00 817.0
20 TraesCS3D01G400300 chr5B 89.902 614 52 6 1 607 400932652 400933262 0.000000e+00 782.0
21 TraesCS3D01G400300 chr5B 83.310 725 41 34 2780 3498 293450125 293450775 2.470000e-166 595.0
22 TraesCS3D01G400300 chr6A 90.115 607 48 7 1 605 600912148 600912744 0.000000e+00 778.0
23 TraesCS3D01G400300 chr6A 89.877 326 24 3 2780 3101 77776956 77777276 9.600000e-111 411.0
24 TraesCS3D01G400300 chr7B 89.491 609 60 4 1 607 402821151 402820545 0.000000e+00 767.0
25 TraesCS3D01G400300 chr7B 96.522 230 8 0 3486 3715 584237076 584237305 7.530000e-102 381.0
26 TraesCS3D01G400300 chr7B 84.293 382 51 5 2781 3156 199290561 199290183 7.580000e-97 364.0
27 TraesCS3D01G400300 chr7B 75.983 458 80 11 1941 2398 463858626 463859053 3.760000e-50 209.0
28 TraesCS3D01G400300 chr3B 86.288 722 49 23 2782 3498 115213098 115213774 0.000000e+00 739.0
29 TraesCS3D01G400300 chr3B 86.753 385 38 8 2782 3156 156911369 156910988 2.060000e-112 416.0
30 TraesCS3D01G400300 chr3B 83.465 254 33 7 2782 3031 140437592 140437840 1.040000e-55 228.0
31 TraesCS3D01G400300 chr3B 93.333 75 5 0 2412 2486 498727805 498727731 1.090000e-20 111.0
32 TraesCS3D01G400300 chr3B 90.244 82 7 1 2413 2493 498367134 498367053 5.070000e-19 106.0
33 TraesCS3D01G400300 chr6D 98.261 230 4 0 3486 3715 16202540 16202311 1.610000e-108 403.0
34 TraesCS3D01G400300 chr7D 96.234 239 7 2 3479 3715 460053919 460054157 1.250000e-104 390.0
35 TraesCS3D01G400300 chr7D 80.080 251 44 6 2778 3023 13931233 13931482 8.200000e-42 182.0
36 TraesCS3D01G400300 chr2A 97.380 229 5 1 3487 3715 14453051 14452824 4.500000e-104 388.0
37 TraesCS3D01G400300 chr2A 85.915 213 25 4 2782 2990 5382301 5382090 4.830000e-54 222.0
38 TraesCS3D01G400300 chr4B 96.943 229 7 0 3487 3715 5831997 5831769 5.820000e-103 385.0
39 TraesCS3D01G400300 chr1B 95.417 240 11 0 3476 3715 673882845 673882606 2.090000e-102 383.0
40 TraesCS3D01G400300 chr7A 96.087 230 9 0 3486 3715 156135442 156135213 3.500000e-100 375.0
41 TraesCS3D01G400300 chr4D 93.103 58 4 0 2414 2471 116271084 116271141 6.610000e-13 86.1
42 TraesCS3D01G400300 chrUn 94.595 37 2 0 3211 3247 94831188 94831152 1.440000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G400300 chr3D 515229388 515233102 3714 True 6861.000000 6861 100.000 1 3715 1 chr3D.!!$R3 3714
1 TraesCS3D01G400300 chr3A 649772166 649774423 2257 True 1045.666667 2383 92.847 605 2778 3 chr3A.!!$R3 2173
2 TraesCS3D01G400300 chr4A 58116881 58117569 688 True 918.000000 918 90.806 2803 3498 1 chr4A.!!$R1 695
3 TraesCS3D01G400300 chr5A 312255208 312255817 609 False 837.000000 837 91.475 1 609 1 chr5A.!!$F1 608
4 TraesCS3D01G400300 chr2B 474891610 474892215 605 False 832.000000 832 91.447 1 607 1 chr2B.!!$F1 606
5 TraesCS3D01G400300 chr6B 438405439 438406041 602 False 821.000000 821 91.240 1 604 1 chr6B.!!$F1 603
6 TraesCS3D01G400300 chr6B 229137191 229137796 605 True 804.000000 804 90.625 1 607 1 chr6B.!!$R1 606
7 TraesCS3D01G400300 chr2D 377511748 377512340 592 True 821.000000 821 91.639 1 596 1 chr2D.!!$R2 595
8 TraesCS3D01G400300 chr1A 292176541 292177147 606 False 817.000000 817 90.969 1 607 1 chr1A.!!$F1 606
9 TraesCS3D01G400300 chr5B 400932652 400933262 610 False 782.000000 782 89.902 1 607 1 chr5B.!!$F2 606
10 TraesCS3D01G400300 chr5B 293450125 293450775 650 False 595.000000 595 83.310 2780 3498 1 chr5B.!!$F1 718
11 TraesCS3D01G400300 chr6A 600912148 600912744 596 False 778.000000 778 90.115 1 605 1 chr6A.!!$F2 604
12 TraesCS3D01G400300 chr7B 402820545 402821151 606 True 767.000000 767 89.491 1 607 1 chr7B.!!$R2 606
13 TraesCS3D01G400300 chr3B 115213098 115213774 676 False 739.000000 739 86.288 2782 3498 1 chr3B.!!$F1 716

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
840 850 0.038744 ATGAGGTGGAGCCAGGTTTG 59.961 55.0 0.0 0.0 40.61 2.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2822 3019 0.531974 GTCAGTGCAGACCCAAACGA 60.532 55.0 0.0 0.0 32.36 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 0.902984 AGTGGACACGGACATGCCTA 60.903 55.000 0.00 0.00 36.20 3.93
45 46 4.718940 GCCTATGTTAGTGTGGCAAAAT 57.281 40.909 0.00 0.00 42.79 1.82
207 215 2.098117 CCTTCTTTTCCAATGCCGCTAG 59.902 50.000 0.00 0.00 0.00 3.42
219 227 1.065928 CCGCTAGACCATCCGTGTC 59.934 63.158 0.00 0.00 0.00 3.67
234 242 3.118408 TCCGTGTCTGGGGAATGATTAAG 60.118 47.826 0.00 0.00 0.00 1.85
253 261 1.961394 AGTCTTGGCTCGACTTACACA 59.039 47.619 3.89 0.00 38.52 3.72
259 267 4.465632 TGGCTCGACTTACACAATGTAT 57.534 40.909 0.00 0.00 32.20 2.29
263 271 5.342525 GGCTCGACTTACACAATGTATATCG 59.657 44.000 12.64 12.64 39.69 2.92
353 361 0.108804 CGAAGGGCGCTGACTTCTAA 60.109 55.000 25.55 0.00 40.63 2.10
407 415 1.068333 GCGAAATGCATGTGTGTTCCT 60.068 47.619 0.00 0.00 45.45 3.36
415 423 3.696548 TGCATGTGTGTTCCTTAACAACA 59.303 39.130 0.00 0.00 46.84 3.33
555 565 2.370849 TGGCCTCGACTCTAAAACCTTT 59.629 45.455 3.32 0.00 0.00 3.11
596 606 6.607735 TGGTAAGTCTTTTACCTTGTTTCG 57.392 37.500 15.01 0.00 43.64 3.46
635 645 0.591170 AAACGAGACAACGCCAATGG 59.409 50.000 0.00 0.00 36.70 3.16
639 649 0.804989 GAGACAACGCCAATGGAAGG 59.195 55.000 2.05 0.00 0.00 3.46
640 650 0.400213 AGACAACGCCAATGGAAGGA 59.600 50.000 2.05 0.00 0.00 3.36
641 651 1.202879 AGACAACGCCAATGGAAGGAA 60.203 47.619 2.05 0.00 0.00 3.36
642 652 1.200020 GACAACGCCAATGGAAGGAAG 59.800 52.381 2.05 0.00 0.00 3.46
644 654 1.250840 AACGCCAATGGAAGGAAGGC 61.251 55.000 2.05 0.00 41.86 4.35
645 655 3.200522 GCCAATGGAAGGAAGGCG 58.799 61.111 2.05 0.00 35.42 5.52
646 656 2.418083 GCCAATGGAAGGAAGGCGG 61.418 63.158 2.05 0.00 35.42 6.13
647 657 1.302949 CCAATGGAAGGAAGGCGGA 59.697 57.895 0.00 0.00 0.00 5.54
648 658 0.749454 CCAATGGAAGGAAGGCGGAG 60.749 60.000 0.00 0.00 0.00 4.63
649 659 0.253044 CAATGGAAGGAAGGCGGAGA 59.747 55.000 0.00 0.00 0.00 3.71
652 662 0.991920 TGGAAGGAAGGCGGAGAAAT 59.008 50.000 0.00 0.00 0.00 2.17
661 671 1.149148 GGCGGAGAAATCCTAATCGC 58.851 55.000 0.00 0.00 37.81 4.58
710 720 8.818057 AGCATAGTATTTCAGATAAACGAACAC 58.182 33.333 0.00 0.00 0.00 3.32
717 727 6.525121 TTCAGATAAACGAACACTGACAAG 57.475 37.500 0.00 0.00 37.34 3.16
778 788 1.187087 ACACACGGAGAGAGGAATCC 58.813 55.000 0.00 0.00 0.00 3.01
799 809 2.941064 CGTCCATCACTTCGGTCTACTA 59.059 50.000 0.00 0.00 0.00 1.82
840 850 0.038744 ATGAGGTGGAGCCAGGTTTG 59.961 55.000 0.00 0.00 40.61 2.93
841 851 1.059584 TGAGGTGGAGCCAGGTTTGA 61.060 55.000 0.00 0.00 40.61 2.69
842 852 0.606673 GAGGTGGAGCCAGGTTTGAC 60.607 60.000 0.00 0.00 40.61 3.18
843 853 1.062488 AGGTGGAGCCAGGTTTGACT 61.062 55.000 0.00 0.00 40.61 3.41
844 854 0.178990 GGTGGAGCCAGGTTTGACTT 60.179 55.000 0.00 0.00 37.17 3.01
845 855 1.073284 GGTGGAGCCAGGTTTGACTTA 59.927 52.381 0.00 0.00 37.17 2.24
846 856 2.427506 GTGGAGCCAGGTTTGACTTAG 58.572 52.381 0.00 0.00 0.00 2.18
847 857 1.271379 TGGAGCCAGGTTTGACTTAGC 60.271 52.381 0.00 0.00 0.00 3.09
848 858 1.003696 GGAGCCAGGTTTGACTTAGCT 59.996 52.381 0.00 0.00 31.96 3.32
849 859 2.553247 GGAGCCAGGTTTGACTTAGCTT 60.553 50.000 0.00 0.00 30.05 3.74
850 860 3.307480 GGAGCCAGGTTTGACTTAGCTTA 60.307 47.826 0.00 0.00 30.05 3.09
851 861 4.324267 GAGCCAGGTTTGACTTAGCTTAA 58.676 43.478 0.00 0.00 30.05 1.85
852 862 4.327680 AGCCAGGTTTGACTTAGCTTAAG 58.672 43.478 0.00 0.00 41.51 1.85
853 863 3.440522 GCCAGGTTTGACTTAGCTTAAGG 59.559 47.826 4.29 0.00 40.08 2.69
854 864 3.440522 CCAGGTTTGACTTAGCTTAAGGC 59.559 47.826 4.29 0.00 44.25 4.35
855 865 3.440522 CAGGTTTGACTTAGCTTAAGGCC 59.559 47.826 4.29 0.00 43.32 5.19
856 866 2.753452 GGTTTGACTTAGCTTAAGGCCC 59.247 50.000 0.00 0.00 43.32 5.80
857 867 3.418047 GTTTGACTTAGCTTAAGGCCCA 58.582 45.455 0.00 0.00 43.32 5.36
858 868 3.350219 TTGACTTAGCTTAAGGCCCAG 57.650 47.619 0.00 0.00 43.32 4.45
859 869 1.559682 TGACTTAGCTTAAGGCCCAGG 59.440 52.381 0.00 0.00 43.32 4.45
860 870 0.256177 ACTTAGCTTAAGGCCCAGGC 59.744 55.000 0.00 0.00 43.05 4.85
861 871 0.815615 CTTAGCTTAAGGCCCAGGCG 60.816 60.000 0.00 0.00 43.05 5.52
862 872 1.559065 TTAGCTTAAGGCCCAGGCGT 61.559 55.000 0.00 0.00 43.05 5.68
863 873 1.968050 TAGCTTAAGGCCCAGGCGTC 61.968 60.000 4.04 0.00 43.05 5.19
864 874 2.124695 CTTAAGGCCCAGGCGTCC 60.125 66.667 4.04 0.00 43.06 4.79
865 875 2.931105 TTAAGGCCCAGGCGTCCA 60.931 61.111 4.04 0.00 43.06 4.02
866 876 2.876368 CTTAAGGCCCAGGCGTCCAG 62.876 65.000 4.04 0.25 43.06 3.86
877 887 3.329231 CGTCCAGCAAAGCAACGA 58.671 55.556 0.00 0.00 34.79 3.85
878 888 1.868997 CGTCCAGCAAAGCAACGAT 59.131 52.632 0.00 0.00 34.79 3.73
879 889 0.453282 CGTCCAGCAAAGCAACGATG 60.453 55.000 0.00 0.00 34.79 3.84
880 890 0.109597 GTCCAGCAAAGCAACGATGG 60.110 55.000 0.00 0.00 0.00 3.51
881 891 0.537143 TCCAGCAAAGCAACGATGGT 60.537 50.000 3.88 0.00 39.43 3.55
882 892 1.164411 CCAGCAAAGCAACGATGGTA 58.836 50.000 0.00 0.00 35.91 3.25
883 893 1.539388 CCAGCAAAGCAACGATGGTAA 59.461 47.619 0.00 0.00 35.91 2.85
884 894 2.164219 CCAGCAAAGCAACGATGGTAAT 59.836 45.455 0.00 0.00 35.91 1.89
885 895 3.376859 CCAGCAAAGCAACGATGGTAATA 59.623 43.478 0.00 0.00 35.91 0.98
886 896 4.036734 CCAGCAAAGCAACGATGGTAATAT 59.963 41.667 0.00 0.00 35.91 1.28
887 897 5.450412 CCAGCAAAGCAACGATGGTAATATT 60.450 40.000 0.00 0.00 35.91 1.28
888 898 6.238621 CCAGCAAAGCAACGATGGTAATATTA 60.239 38.462 0.00 0.00 35.91 0.98
889 899 7.362662 CAGCAAAGCAACGATGGTAATATTAT 58.637 34.615 0.00 0.00 35.91 1.28
890 900 8.503196 CAGCAAAGCAACGATGGTAATATTATA 58.497 33.333 0.00 0.00 35.91 0.98
891 901 9.062524 AGCAAAGCAACGATGGTAATATTATAA 57.937 29.630 0.00 0.00 35.91 0.98
892 902 9.840427 GCAAAGCAACGATGGTAATATTATAAT 57.160 29.630 2.97 2.97 35.91 1.28
982 992 2.267426 GCAACAAAAGGAAACACGCTT 58.733 42.857 0.00 0.00 0.00 4.68
1011 1022 6.426937 CCACAGAGGTTTCCATATAAATACCG 59.573 42.308 0.00 0.00 0.00 4.02
1012 1023 7.214381 CACAGAGGTTTCCATATAAATACCGA 58.786 38.462 0.00 0.00 0.00 4.69
1015 1026 7.275779 CAGAGGTTTCCATATAAATACCGATCG 59.724 40.741 8.51 8.51 0.00 3.69
1021 1033 6.849502 TCCATATAAATACCGATCGAGACAC 58.150 40.000 18.66 0.00 0.00 3.67
1026 1038 4.649088 AATACCGATCGAGACACAATCA 57.351 40.909 18.66 0.00 0.00 2.57
1028 1040 1.135139 ACCGATCGAGACACAATCAGG 59.865 52.381 18.66 0.00 0.00 3.86
1073 1085 1.676006 CTGCGAAGTCCAAACAACCTT 59.324 47.619 0.00 0.00 0.00 3.50
1132 1144 5.675684 ATTCTTCTTCACTTCTCTCCTCC 57.324 43.478 0.00 0.00 0.00 4.30
1135 1147 3.094484 TCTTCACTTCTCTCCTCCTCC 57.906 52.381 0.00 0.00 0.00 4.30
1138 1150 1.286553 TCACTTCTCTCCTCCTCCTCC 59.713 57.143 0.00 0.00 0.00 4.30
1172 1190 3.810310 AGGCCTAGAAAACTCTGATCG 57.190 47.619 1.29 0.00 0.00 3.69
1179 1197 5.302059 CCTAGAAAACTCTGATCGTGGGATA 59.698 44.000 0.00 0.00 31.51 2.59
1206 1224 7.998964 TGTCTAGAAAGGATATTGGGGATTTTC 59.001 37.037 0.00 0.00 0.00 2.29
1220 1389 3.541632 GGATTTTCCCGACAGATAAGCA 58.458 45.455 0.00 0.00 0.00 3.91
1226 1395 0.815615 CCGACAGATAAGCAAGCCCC 60.816 60.000 0.00 0.00 0.00 5.80
1241 1410 1.485066 AGCCCCCAAGTAGTGATTACG 59.515 52.381 0.00 0.00 37.35 3.18
1257 1426 2.163826 TACGACGACGCTGTAATCAC 57.836 50.000 7.30 0.00 43.96 3.06
1260 1429 0.640768 GACGACGCTGTAATCACTGC 59.359 55.000 0.00 0.00 43.91 4.40
1294 1463 3.303857 GCGCGTGTACTGATACTACTGAT 60.304 47.826 8.43 0.00 32.00 2.90
1295 1464 4.456019 CGCGTGTACTGATACTACTGATC 58.544 47.826 0.00 0.00 32.00 2.92
1312 1481 1.547372 GATCCCATGCATGCCCATAAC 59.453 52.381 21.69 4.68 0.00 1.89
1314 1483 1.661480 CCATGCATGCCCATAACCG 59.339 57.895 21.69 0.10 0.00 4.44
1343 1512 9.498176 TTTTCTTAAAACATGTAGGAGGAGTAC 57.502 33.333 0.00 0.00 0.00 2.73
1353 1522 6.594788 TGTAGGAGGAGTACGTATTTTGTT 57.405 37.500 0.00 0.00 0.00 2.83
1359 1528 5.812286 AGGAGTACGTATTTTGTTGGGATT 58.188 37.500 0.00 0.00 0.00 3.01
1360 1529 5.878669 AGGAGTACGTATTTTGTTGGGATTC 59.121 40.000 0.00 0.00 0.00 2.52
1362 1531 6.402875 GGAGTACGTATTTTGTTGGGATTCAC 60.403 42.308 0.00 0.00 0.00 3.18
1363 1532 4.776795 ACGTATTTTGTTGGGATTCACC 57.223 40.909 0.00 0.00 38.08 4.02
1374 1543 2.806945 GGATTCACCCACAGGATCAA 57.193 50.000 0.00 0.00 36.73 2.57
1375 1544 2.648059 GGATTCACCCACAGGATCAAG 58.352 52.381 0.00 0.00 36.73 3.02
1378 1547 3.593442 TTCACCCACAGGATCAAGTTT 57.407 42.857 0.00 0.00 36.73 2.66
1402 1571 2.868331 CGTGCGTGTCCGTCTACG 60.868 66.667 0.00 0.00 42.79 3.51
1415 1584 3.187842 TCCGTCTACGTTGATATGATCGG 59.812 47.826 14.95 14.95 37.74 4.18
1445 1614 5.200368 GGCGAATCCCAACATATTTCATT 57.800 39.130 0.00 0.00 0.00 2.57
1447 1616 6.381801 GGCGAATCCCAACATATTTCATTAG 58.618 40.000 0.00 0.00 0.00 1.73
1512 1681 1.303309 CCGATCCTGGTGCAGATTTC 58.697 55.000 0.00 0.00 32.44 2.17
1593 1790 6.321181 TCCTGCTCAAACCATTATTAATCCAC 59.679 38.462 0.00 0.00 0.00 4.02
2330 2527 4.980805 GCACGGGTCAACCTCGCA 62.981 66.667 9.15 0.00 36.97 5.10
2366 2563 3.073735 CCTGCCTCGGAGCTCACT 61.074 66.667 17.19 0.00 0.00 3.41
2541 2738 3.071206 GGCACTGCGAGGAGGAGA 61.071 66.667 0.00 0.00 41.23 3.71
2561 2758 0.526662 ACGGTAGAGGTTTCAGCGAG 59.473 55.000 0.00 0.00 36.99 5.03
2624 2821 2.746277 GAGATGGCGGCCGTGTTT 60.746 61.111 28.70 9.51 0.00 2.83
2657 2854 4.402528 TGCACCATTCCGGACCCG 62.403 66.667 1.83 0.66 38.63 5.28
2726 2923 3.195698 GGCTGATTCCGTCGCACC 61.196 66.667 0.00 0.00 0.00 5.01
2747 2944 2.101582 CTGCTGAGTCCCCACTATGTAC 59.898 54.545 0.00 0.00 30.63 2.90
2761 2958 7.597743 CCCCACTATGTACAATACGTAATCTTC 59.402 40.741 0.00 0.00 30.37 2.87
2799 2996 3.054802 CCTAAGAGCAACTCCAATGAGGT 60.055 47.826 0.00 0.00 43.29 3.85
2820 3017 1.147376 CCCATTTCGTCCGCCCATA 59.853 57.895 0.00 0.00 0.00 2.74
2822 3019 1.604604 CCATTTCGTCCGCCCATATT 58.395 50.000 0.00 0.00 0.00 1.28
2838 3035 2.851263 TATTCGTTTGGGTCTGCACT 57.149 45.000 0.00 0.00 0.00 4.40
2890 3089 7.210873 ACCATTTTTATTTTGTGTCCGCTTTA 58.789 30.769 0.00 0.00 0.00 1.85
2900 3099 1.448893 TCCGCTTTATGTCCACGCC 60.449 57.895 0.00 0.00 0.00 5.68
2968 3167 1.358759 CAAAGCGGGCGTTTTCTGT 59.641 52.632 0.00 0.00 0.00 3.41
3028 3230 1.082954 ACCTGCCATCCACCTACCT 59.917 57.895 0.00 0.00 0.00 3.08
3104 3307 3.825611 GCCACGCCATCGCCAATT 61.826 61.111 0.00 0.00 39.84 2.32
3107 3310 2.114670 CACGCCATCGCCAATTCCT 61.115 57.895 0.00 0.00 39.84 3.36
3186 3389 3.399181 CCGCCACCCAAGGAGCTA 61.399 66.667 0.00 0.00 0.00 3.32
3187 3390 2.187946 CGCCACCCAAGGAGCTAG 59.812 66.667 0.00 0.00 0.00 3.42
3188 3391 2.359169 CGCCACCCAAGGAGCTAGA 61.359 63.158 0.00 0.00 0.00 2.43
3189 3392 1.524482 GCCACCCAAGGAGCTAGAG 59.476 63.158 0.00 0.00 0.00 2.43
3190 3393 1.524482 CCACCCAAGGAGCTAGAGC 59.476 63.158 0.00 0.00 42.49 4.09
3344 3590 3.047280 TCGGATGCACAACCGCAC 61.047 61.111 19.45 0.00 46.56 5.34
3423 3669 3.428797 TAGCTGCCGCTAGTACCG 58.571 61.111 5.65 0.00 46.79 4.02
3424 3670 1.452651 TAGCTGCCGCTAGTACCGT 60.453 57.895 5.65 0.00 46.79 4.83
3425 3671 0.179048 TAGCTGCCGCTAGTACCGTA 60.179 55.000 5.65 0.00 46.79 4.02
3426 3672 1.008767 GCTGCCGCTAGTACCGTAG 60.009 63.158 0.00 0.00 0.00 3.51
3427 3673 1.722636 GCTGCCGCTAGTACCGTAGT 61.723 60.000 0.00 0.00 0.00 2.73
3428 3674 1.586422 CTGCCGCTAGTACCGTAGTA 58.414 55.000 0.00 0.00 0.00 1.82
3469 3721 1.351707 CGGATGCATAACCGTGTGC 59.648 57.895 16.59 2.92 43.53 4.57
3470 3722 1.351707 GGATGCATAACCGTGTGCG 59.648 57.895 0.00 0.00 44.36 5.34
3471 3723 1.366111 GGATGCATAACCGTGTGCGT 61.366 55.000 0.00 4.10 44.36 5.24
3472 3724 0.247655 GATGCATAACCGTGTGCGTG 60.248 55.000 0.00 0.00 44.36 5.34
3476 3728 1.003108 CATAACCGTGTGCGTGCATA 58.997 50.000 0.00 0.00 36.15 3.14
3490 3742 4.083271 TGCGTGCATACTAGATGCTACTAG 60.083 45.833 20.51 13.37 44.79 2.57
3491 3743 4.407818 CGTGCATACTAGATGCTACTAGC 58.592 47.826 20.51 0.61 44.79 3.42
3500 3752 4.580835 GCTACTAGCATAGCCCGC 57.419 61.111 2.96 0.00 44.39 6.13
3501 3753 1.444553 GCTACTAGCATAGCCCGCG 60.445 63.158 0.00 0.00 44.39 6.46
3502 3754 1.444553 CTACTAGCATAGCCCGCGC 60.445 63.158 0.00 0.00 44.39 6.86
3503 3755 3.263503 TACTAGCATAGCCCGCGCG 62.264 63.158 25.67 25.67 44.39 6.86
3530 3782 3.511595 CGCGCCTGGTGATGCATT 61.512 61.111 12.29 0.00 0.00 3.56
3531 3783 2.179547 CGCGCCTGGTGATGCATTA 61.180 57.895 12.29 0.00 0.00 1.90
3532 3784 1.509644 CGCGCCTGGTGATGCATTAT 61.510 55.000 12.29 0.00 0.00 1.28
3533 3785 1.522668 GCGCCTGGTGATGCATTATA 58.477 50.000 12.29 0.00 0.00 0.98
3534 3786 2.086869 GCGCCTGGTGATGCATTATAT 58.913 47.619 12.29 0.00 0.00 0.86
3535 3787 2.489329 GCGCCTGGTGATGCATTATATT 59.511 45.455 12.29 0.00 0.00 1.28
3536 3788 3.057315 GCGCCTGGTGATGCATTATATTT 60.057 43.478 12.29 0.00 0.00 1.40
3537 3789 4.155826 GCGCCTGGTGATGCATTATATTTA 59.844 41.667 12.29 0.00 0.00 1.40
3538 3790 5.163622 GCGCCTGGTGATGCATTATATTTAT 60.164 40.000 12.29 0.00 0.00 1.40
3539 3791 6.038161 GCGCCTGGTGATGCATTATATTTATA 59.962 38.462 12.29 0.00 0.00 0.98
3540 3792 7.409697 CGCCTGGTGATGCATTATATTTATAC 58.590 38.462 0.00 0.00 0.00 1.47
3541 3793 7.409697 GCCTGGTGATGCATTATATTTATACG 58.590 38.462 0.00 0.00 0.00 3.06
3542 3794 7.467267 GCCTGGTGATGCATTATATTTATACGG 60.467 40.741 0.00 0.00 0.00 4.02
3543 3795 7.768582 CCTGGTGATGCATTATATTTATACGGA 59.231 37.037 0.00 0.00 0.00 4.69
3544 3796 9.330063 CTGGTGATGCATTATATTTATACGGAT 57.670 33.333 0.00 0.00 0.00 4.18
3545 3797 9.325198 TGGTGATGCATTATATTTATACGGATC 57.675 33.333 0.00 0.00 0.00 3.36
3546 3798 8.487970 GGTGATGCATTATATTTATACGGATCG 58.512 37.037 0.00 0.00 29.09 3.69
3547 3799 9.031360 GTGATGCATTATATTTATACGGATCGT 57.969 33.333 0.00 0.00 44.35 3.73
3554 3806 8.931385 TTATATTTATACGGATCGTAAAGGCC 57.069 34.615 0.00 0.00 45.39 5.19
3555 3807 4.669206 TTTATACGGATCGTAAAGGCCA 57.331 40.909 5.01 0.00 45.39 5.36
3556 3808 4.877378 TTATACGGATCGTAAAGGCCAT 57.123 40.909 5.01 0.00 45.39 4.40
3557 3809 3.764237 ATACGGATCGTAAAGGCCATT 57.236 42.857 5.01 0.33 45.39 3.16
3558 3810 2.413310 ACGGATCGTAAAGGCCATTT 57.587 45.000 5.01 5.42 38.73 2.32
3559 3811 2.718563 ACGGATCGTAAAGGCCATTTT 58.281 42.857 5.01 0.00 38.73 1.82
3560 3812 3.086282 ACGGATCGTAAAGGCCATTTTT 58.914 40.909 5.01 0.00 38.73 1.94
3561 3813 4.263435 ACGGATCGTAAAGGCCATTTTTA 58.737 39.130 5.01 0.00 38.73 1.52
3562 3814 4.885325 ACGGATCGTAAAGGCCATTTTTAT 59.115 37.500 5.01 0.00 38.73 1.40
3563 3815 6.056884 ACGGATCGTAAAGGCCATTTTTATA 58.943 36.000 5.01 0.00 38.73 0.98
3564 3816 6.713450 ACGGATCGTAAAGGCCATTTTTATAT 59.287 34.615 5.01 0.00 38.73 0.86
3565 3817 7.229907 ACGGATCGTAAAGGCCATTTTTATATT 59.770 33.333 5.01 0.00 38.73 1.28
3566 3818 8.079809 CGGATCGTAAAGGCCATTTTTATATTT 58.920 33.333 5.01 0.00 32.01 1.40
3567 3819 9.758651 GGATCGTAAAGGCCATTTTTATATTTT 57.241 29.630 5.01 0.00 32.01 1.82
3593 3845 9.982291 TTAATGACAGAATCGCATAACTAAAAC 57.018 29.630 0.00 0.00 0.00 2.43
3594 3846 6.417191 TGACAGAATCGCATAACTAAAACC 57.583 37.500 0.00 0.00 0.00 3.27
3595 3847 5.353123 TGACAGAATCGCATAACTAAAACCC 59.647 40.000 0.00 0.00 0.00 4.11
3596 3848 5.250200 ACAGAATCGCATAACTAAAACCCA 58.750 37.500 0.00 0.00 0.00 4.51
3597 3849 5.354234 ACAGAATCGCATAACTAAAACCCAG 59.646 40.000 0.00 0.00 0.00 4.45
3598 3850 5.584649 CAGAATCGCATAACTAAAACCCAGA 59.415 40.000 0.00 0.00 0.00 3.86
3599 3851 6.093495 CAGAATCGCATAACTAAAACCCAGAA 59.907 38.462 0.00 0.00 0.00 3.02
3600 3852 6.657541 AGAATCGCATAACTAAAACCCAGAAA 59.342 34.615 0.00 0.00 0.00 2.52
3601 3853 5.873179 TCGCATAACTAAAACCCAGAAAG 57.127 39.130 0.00 0.00 0.00 2.62
3602 3854 5.553123 TCGCATAACTAAAACCCAGAAAGA 58.447 37.500 0.00 0.00 0.00 2.52
3603 3855 5.642063 TCGCATAACTAAAACCCAGAAAGAG 59.358 40.000 0.00 0.00 0.00 2.85
3604 3856 5.411669 CGCATAACTAAAACCCAGAAAGAGT 59.588 40.000 0.00 0.00 0.00 3.24
3605 3857 6.072673 CGCATAACTAAAACCCAGAAAGAGTT 60.073 38.462 0.00 0.00 0.00 3.01
3606 3858 7.306213 GCATAACTAAAACCCAGAAAGAGTTC 58.694 38.462 0.00 0.00 0.00 3.01
3607 3859 7.175119 GCATAACTAAAACCCAGAAAGAGTTCT 59.825 37.037 0.00 0.00 45.36 3.01
3608 3860 9.720769 CATAACTAAAACCCAGAAAGAGTTCTA 57.279 33.333 0.00 0.00 42.45 2.10
3611 3863 9.470399 AACTAAAACCCAGAAAGAGTTCTAAAA 57.530 29.630 0.00 0.00 42.45 1.52
3612 3864 9.121658 ACTAAAACCCAGAAAGAGTTCTAAAAG 57.878 33.333 0.00 0.00 42.45 2.27
3613 3865 6.961360 AAACCCAGAAAGAGTTCTAAAAGG 57.039 37.500 0.00 0.00 42.45 3.11
3614 3866 5.648330 ACCCAGAAAGAGTTCTAAAAGGT 57.352 39.130 0.00 0.00 42.45 3.50
3615 3867 5.377478 ACCCAGAAAGAGTTCTAAAAGGTG 58.623 41.667 0.00 0.00 42.45 4.00
3616 3868 4.762251 CCCAGAAAGAGTTCTAAAAGGTGG 59.238 45.833 0.00 0.00 42.45 4.61
3617 3869 5.456186 CCCAGAAAGAGTTCTAAAAGGTGGA 60.456 44.000 0.00 0.00 42.45 4.02
3618 3870 6.062095 CCAGAAAGAGTTCTAAAAGGTGGAA 58.938 40.000 0.00 0.00 42.45 3.53
3619 3871 6.546034 CCAGAAAGAGTTCTAAAAGGTGGAAA 59.454 38.462 0.00 0.00 42.45 3.13
3620 3872 7.068226 CCAGAAAGAGTTCTAAAAGGTGGAAAA 59.932 37.037 0.00 0.00 42.45 2.29
3621 3873 8.633561 CAGAAAGAGTTCTAAAAGGTGGAAAAT 58.366 33.333 0.00 0.00 42.45 1.82
3622 3874 8.633561 AGAAAGAGTTCTAAAAGGTGGAAAATG 58.366 33.333 0.00 0.00 42.53 2.32
3623 3875 8.533569 AAAGAGTTCTAAAAGGTGGAAAATGA 57.466 30.769 0.00 0.00 0.00 2.57
3624 3876 7.751768 AGAGTTCTAAAAGGTGGAAAATGAG 57.248 36.000 0.00 0.00 0.00 2.90
3625 3877 7.290813 AGAGTTCTAAAAGGTGGAAAATGAGT 58.709 34.615 0.00 0.00 0.00 3.41
3626 3878 8.437575 AGAGTTCTAAAAGGTGGAAAATGAGTA 58.562 33.333 0.00 0.00 0.00 2.59
3627 3879 8.392372 AGTTCTAAAAGGTGGAAAATGAGTAC 57.608 34.615 0.00 0.00 0.00 2.73
3628 3880 7.996644 AGTTCTAAAAGGTGGAAAATGAGTACA 59.003 33.333 0.00 0.00 0.00 2.90
3629 3881 8.793592 GTTCTAAAAGGTGGAAAATGAGTACAT 58.206 33.333 0.00 0.00 38.50 2.29
3630 3882 8.934023 TCTAAAAGGTGGAAAATGAGTACATT 57.066 30.769 0.00 0.00 46.99 2.71
3642 3894 6.720112 AATGAGTACATTTATTGCAGCCAT 57.280 33.333 0.00 0.00 43.17 4.40
3643 3895 5.503662 TGAGTACATTTATTGCAGCCATG 57.496 39.130 0.00 0.00 0.00 3.66
3644 3896 4.949238 TGAGTACATTTATTGCAGCCATGT 59.051 37.500 0.00 7.70 32.80 3.21
3645 3897 6.118852 TGAGTACATTTATTGCAGCCATGTA 58.881 36.000 0.00 6.18 30.70 2.29
3646 3898 6.772233 TGAGTACATTTATTGCAGCCATGTAT 59.228 34.615 11.17 4.17 33.90 2.29
3647 3899 6.973843 AGTACATTTATTGCAGCCATGTATG 58.026 36.000 11.17 0.00 33.90 2.39
3648 3900 6.772233 AGTACATTTATTGCAGCCATGTATGA 59.228 34.615 11.17 0.00 33.90 2.15
3649 3901 6.659745 ACATTTATTGCAGCCATGTATGAT 57.340 33.333 8.67 0.00 0.00 2.45
3650 3902 7.764141 ACATTTATTGCAGCCATGTATGATA 57.236 32.000 8.67 0.00 0.00 2.15
3651 3903 8.180706 ACATTTATTGCAGCCATGTATGATAA 57.819 30.769 8.67 0.00 0.00 1.75
3652 3904 8.640651 ACATTTATTGCAGCCATGTATGATAAA 58.359 29.630 8.67 0.00 0.00 1.40
3653 3905 9.647797 CATTTATTGCAGCCATGTATGATAAAT 57.352 29.630 0.00 1.33 0.00 1.40
3656 3908 9.519191 TTATTGCAGCCATGTATGATAAATACT 57.481 29.630 0.00 0.00 0.00 2.12
3657 3909 6.806388 TGCAGCCATGTATGATAAATACTG 57.194 37.500 0.00 2.11 0.00 2.74
3658 3910 6.532826 TGCAGCCATGTATGATAAATACTGA 58.467 36.000 8.33 0.00 0.00 3.41
3659 3911 7.170277 TGCAGCCATGTATGATAAATACTGAT 58.830 34.615 8.33 0.00 0.00 2.90
3660 3912 7.120138 TGCAGCCATGTATGATAAATACTGATG 59.880 37.037 8.33 0.00 0.00 3.07
3661 3913 7.335171 GCAGCCATGTATGATAAATACTGATGA 59.665 37.037 8.33 0.00 0.00 2.92
3662 3914 8.880750 CAGCCATGTATGATAAATACTGATGAG 58.119 37.037 0.00 0.00 0.00 2.90
3663 3915 7.551974 AGCCATGTATGATAAATACTGATGAGC 59.448 37.037 0.00 0.00 0.00 4.26
3664 3916 7.465111 GCCATGTATGATAAATACTGATGAGCG 60.465 40.741 0.00 0.00 0.00 5.03
3665 3917 7.010830 CCATGTATGATAAATACTGATGAGCGG 59.989 40.741 0.00 0.00 0.00 5.52
3666 3918 7.227049 TGTATGATAAATACTGATGAGCGGA 57.773 36.000 0.00 0.00 0.00 5.54
3667 3919 7.666623 TGTATGATAAATACTGATGAGCGGAA 58.333 34.615 0.00 0.00 0.00 4.30
3668 3920 8.147704 TGTATGATAAATACTGATGAGCGGAAA 58.852 33.333 0.00 0.00 0.00 3.13
3669 3921 9.155975 GTATGATAAATACTGATGAGCGGAAAT 57.844 33.333 0.00 0.00 0.00 2.17
3670 3922 7.425577 TGATAAATACTGATGAGCGGAAATG 57.574 36.000 0.00 0.00 0.00 2.32
3671 3923 6.992123 TGATAAATACTGATGAGCGGAAATGT 59.008 34.615 0.00 0.00 0.00 2.71
3672 3924 8.147704 TGATAAATACTGATGAGCGGAAATGTA 58.852 33.333 0.00 0.00 0.00 2.29
3673 3925 6.604735 AAATACTGATGAGCGGAAATGTAC 57.395 37.500 0.00 0.00 0.00 2.90
3674 3926 3.610040 ACTGATGAGCGGAAATGTACA 57.390 42.857 0.00 0.00 0.00 2.90
3675 3927 3.262420 ACTGATGAGCGGAAATGTACAC 58.738 45.455 0.00 0.00 0.00 2.90
3676 3928 2.267426 TGATGAGCGGAAATGTACACG 58.733 47.619 0.00 0.00 0.00 4.49
3687 3939 7.090401 CGGAAATGTACACGCTACTAATAAG 57.910 40.000 0.00 0.00 0.00 1.73
3688 3940 6.143438 CGGAAATGTACACGCTACTAATAAGG 59.857 42.308 0.00 0.00 0.00 2.69
3689 3941 6.982724 GGAAATGTACACGCTACTAATAAGGT 59.017 38.462 0.00 0.00 0.00 3.50
3690 3942 7.168804 GGAAATGTACACGCTACTAATAAGGTC 59.831 40.741 0.00 0.00 0.00 3.85
3691 3943 6.956202 ATGTACACGCTACTAATAAGGTCT 57.044 37.500 0.00 0.00 0.00 3.85
3692 3944 8.455903 AATGTACACGCTACTAATAAGGTCTA 57.544 34.615 0.00 0.00 0.00 2.59
3693 3945 7.251704 TGTACACGCTACTAATAAGGTCTAC 57.748 40.000 0.00 0.00 0.00 2.59
3694 3946 7.050377 TGTACACGCTACTAATAAGGTCTACT 58.950 38.462 0.00 0.00 0.00 2.57
3695 3947 7.554118 TGTACACGCTACTAATAAGGTCTACTT 59.446 37.037 0.00 0.00 43.28 2.24
3696 3948 9.046296 GTACACGCTACTAATAAGGTCTACTTA 57.954 37.037 0.00 0.00 45.24 2.24
3711 3963 8.492415 AGGTCTACTTATTGGCACATTATAGA 57.508 34.615 0.00 0.00 39.30 1.98
3712 3964 8.589338 AGGTCTACTTATTGGCACATTATAGAG 58.411 37.037 0.00 0.00 39.30 2.43
3713 3965 8.585881 GGTCTACTTATTGGCACATTATAGAGA 58.414 37.037 0.00 0.00 39.30 3.10
3714 3966 9.413048 GTCTACTTATTGGCACATTATAGAGAC 57.587 37.037 0.00 0.00 39.30 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 3.556843 GCCCAATTTTGCCACACTAACAT 60.557 43.478 0.00 0.00 0.00 2.71
84 86 6.811665 CAGTCGTCCAAACTCTATTGTTGATA 59.188 38.462 0.00 0.00 0.00 2.15
112 114 0.895559 CAACCCCTTCACTGAAGCCC 60.896 60.000 12.69 0.00 38.24 5.19
121 129 1.055040 CAATTTGGCCAACCCCTTCA 58.945 50.000 20.35 0.97 33.59 3.02
207 215 1.550130 TTCCCCAGACACGGATGGTC 61.550 60.000 0.00 0.00 34.58 4.02
219 227 3.633986 GCCAAGACTTAATCATTCCCCAG 59.366 47.826 0.00 0.00 0.00 4.45
234 242 2.433868 TGTGTAAGTCGAGCCAAGAC 57.566 50.000 0.00 0.00 38.81 3.01
253 261 2.231478 CCCAGTCCGCTCGATATACATT 59.769 50.000 0.00 0.00 0.00 2.71
259 267 2.125326 CACCCCAGTCCGCTCGATA 61.125 63.158 0.00 0.00 0.00 2.92
263 271 2.670148 AATCCACCCCAGTCCGCTC 61.670 63.158 0.00 0.00 0.00 5.03
407 415 4.156922 CACCCACTGAAACTGTGTTGTTAA 59.843 41.667 0.00 0.00 32.65 2.01
415 423 0.255890 AGCACACCCACTGAAACTGT 59.744 50.000 0.00 0.00 0.00 3.55
477 485 6.445357 ACATTACACAAATATTTCGTCCCC 57.555 37.500 0.00 0.00 0.00 4.81
481 489 7.642194 CGGCATTACATTACACAAATATTTCGT 59.358 33.333 0.00 1.60 0.00 3.85
616 626 0.591170 CCATTGGCGTTGTCTCGTTT 59.409 50.000 0.00 0.00 0.00 3.60
617 627 0.250124 TCCATTGGCGTTGTCTCGTT 60.250 50.000 0.00 0.00 0.00 3.85
619 629 0.443869 CTTCCATTGGCGTTGTCTCG 59.556 55.000 0.00 0.00 0.00 4.04
624 634 0.527565 CCTTCCTTCCATTGGCGTTG 59.472 55.000 0.00 0.00 0.00 4.10
625 635 1.250840 GCCTTCCTTCCATTGGCGTT 61.251 55.000 0.00 0.00 33.96 4.84
635 645 1.669604 GGATTTCTCCGCCTTCCTTC 58.330 55.000 0.00 0.00 0.00 3.46
645 655 2.147150 GCTGGCGATTAGGATTTCTCC 58.853 52.381 0.00 0.00 42.43 3.71
646 656 2.147150 GGCTGGCGATTAGGATTTCTC 58.853 52.381 0.00 0.00 0.00 2.87
647 657 1.541233 CGGCTGGCGATTAGGATTTCT 60.541 52.381 19.64 0.00 0.00 2.52
648 658 0.868406 CGGCTGGCGATTAGGATTTC 59.132 55.000 19.64 0.00 0.00 2.17
649 659 1.166531 GCGGCTGGCGATTAGGATTT 61.167 55.000 28.34 0.00 0.00 2.17
710 720 1.013596 TGCAACCGTGTTCTTGTCAG 58.986 50.000 0.00 0.00 0.00 3.51
717 727 0.593773 ACGCATTTGCAACCGTGTTC 60.594 50.000 15.49 0.00 42.21 3.18
778 788 1.743958 AGTAGACCGAAGTGATGGACG 59.256 52.381 0.00 0.00 0.00 4.79
799 809 9.107177 CTCATAAATTACTCAGCTTGACTTGAT 57.893 33.333 0.00 0.00 0.00 2.57
823 833 0.606673 GTCAAACCTGGCTCCACCTC 60.607 60.000 0.00 0.00 40.22 3.85
840 850 1.747552 GCCTGGGCCTTAAGCTAAGTC 60.748 57.143 4.53 0.00 43.05 3.01
841 851 0.256177 GCCTGGGCCTTAAGCTAAGT 59.744 55.000 4.53 0.00 43.05 2.24
842 852 0.815615 CGCCTGGGCCTTAAGCTAAG 60.816 60.000 4.53 0.00 43.05 2.18
843 853 1.223487 CGCCTGGGCCTTAAGCTAA 59.777 57.895 4.53 0.00 43.05 3.09
844 854 1.968050 GACGCCTGGGCCTTAAGCTA 61.968 60.000 4.53 0.00 43.05 3.32
845 855 3.330720 ACGCCTGGGCCTTAAGCT 61.331 61.111 4.53 0.00 43.05 3.74
846 856 2.824489 GACGCCTGGGCCTTAAGC 60.824 66.667 4.53 0.97 42.60 3.09
847 857 2.124695 GGACGCCTGGGCCTTAAG 60.125 66.667 4.53 0.00 37.98 1.85
848 858 2.931105 TGGACGCCTGGGCCTTAA 60.931 61.111 4.53 0.00 37.98 1.85
849 859 3.399181 CTGGACGCCTGGGCCTTA 61.399 66.667 4.53 0.00 37.98 2.69
854 864 3.058160 CTTTGCTGGACGCCTGGG 61.058 66.667 0.00 0.00 38.05 4.45
855 865 3.741476 GCTTTGCTGGACGCCTGG 61.741 66.667 0.00 0.00 38.05 4.45
856 866 2.554636 TTGCTTTGCTGGACGCCTG 61.555 57.895 0.00 0.00 38.05 4.85
857 867 2.203337 TTGCTTTGCTGGACGCCT 60.203 55.556 0.00 0.00 38.05 5.52
858 868 2.050077 GTTGCTTTGCTGGACGCC 60.050 61.111 0.00 0.00 38.05 5.68
859 869 2.187599 ATCGTTGCTTTGCTGGACGC 62.188 55.000 0.00 0.00 39.77 5.19
860 870 0.453282 CATCGTTGCTTTGCTGGACG 60.453 55.000 0.00 0.00 33.91 4.79
861 871 0.109597 CCATCGTTGCTTTGCTGGAC 60.110 55.000 0.00 0.00 0.00 4.02
862 872 0.537143 ACCATCGTTGCTTTGCTGGA 60.537 50.000 0.00 0.00 0.00 3.86
863 873 1.164411 TACCATCGTTGCTTTGCTGG 58.836 50.000 0.00 0.00 0.00 4.85
864 874 2.987413 TTACCATCGTTGCTTTGCTG 57.013 45.000 0.00 0.00 0.00 4.41
865 875 5.835113 AATATTACCATCGTTGCTTTGCT 57.165 34.783 0.00 0.00 0.00 3.91
866 876 9.840427 ATTATAATATTACCATCGTTGCTTTGC 57.160 29.630 0.00 0.00 0.00 3.68
913 923 9.909644 GTACGTATCATGACCAAATTATAGTCT 57.090 33.333 0.00 0.00 0.00 3.24
914 924 9.136952 GGTACGTATCATGACCAAATTATAGTC 57.863 37.037 0.00 0.00 31.89 2.59
915 925 8.867097 AGGTACGTATCATGACCAAATTATAGT 58.133 33.333 8.86 0.00 34.18 2.12
916 926 9.140286 CAGGTACGTATCATGACCAAATTATAG 57.860 37.037 8.86 0.00 34.18 1.31
917 927 7.601130 GCAGGTACGTATCATGACCAAATTATA 59.399 37.037 8.86 0.00 34.18 0.98
918 928 6.426937 GCAGGTACGTATCATGACCAAATTAT 59.573 38.462 8.86 0.00 34.18 1.28
919 929 5.756347 GCAGGTACGTATCATGACCAAATTA 59.244 40.000 8.86 0.00 34.18 1.40
920 930 4.574828 GCAGGTACGTATCATGACCAAATT 59.425 41.667 8.86 0.00 34.18 1.82
921 931 4.127171 GCAGGTACGTATCATGACCAAAT 58.873 43.478 8.86 0.00 34.18 2.32
922 932 3.055747 TGCAGGTACGTATCATGACCAAA 60.056 43.478 8.86 0.00 34.18 3.28
923 933 2.498078 TGCAGGTACGTATCATGACCAA 59.502 45.455 8.86 0.00 34.18 3.67
924 934 2.104170 TGCAGGTACGTATCATGACCA 58.896 47.619 8.86 0.00 34.18 4.02
982 992 1.067295 ATGGAAACCTCTGTGGCTGA 58.933 50.000 0.00 0.00 40.22 4.26
1011 1022 1.134699 TGGCCTGATTGTGTCTCGATC 60.135 52.381 3.32 0.00 37.44 3.69
1012 1023 0.904649 TGGCCTGATTGTGTCTCGAT 59.095 50.000 3.32 0.00 0.00 3.59
1015 1026 0.678048 GGGTGGCCTGATTGTGTCTC 60.678 60.000 3.32 0.00 0.00 3.36
1021 1033 0.394352 GGTAGTGGGTGGCCTGATTG 60.394 60.000 3.32 0.00 0.00 2.67
1026 1038 0.178885 TAGTTGGTAGTGGGTGGCCT 60.179 55.000 3.32 0.00 0.00 5.19
1028 1040 1.207329 CTCTAGTTGGTAGTGGGTGGC 59.793 57.143 0.00 0.00 0.00 5.01
1073 1085 6.315891 CCTTTCAGCTTTTGTTTTGGATTTGA 59.684 34.615 0.00 0.00 0.00 2.69
1125 1137 1.994399 AGAAGAGGAGGAGGAGGAGA 58.006 55.000 0.00 0.00 0.00 3.71
1132 1144 4.099419 GCCTAAGAAGAAGAAGAGGAGGAG 59.901 50.000 0.00 0.00 0.00 3.69
1135 1147 4.030216 AGGCCTAAGAAGAAGAAGAGGAG 58.970 47.826 1.29 0.00 0.00 3.69
1138 1150 6.783708 TTCTAGGCCTAAGAAGAAGAAGAG 57.216 41.667 14.85 0.00 0.00 2.85
1172 1190 8.043710 CCAATATCCTTTCTAGACATATCCCAC 58.956 40.741 0.00 0.00 0.00 4.61
1179 1197 7.654287 AATCCCCAATATCCTTTCTAGACAT 57.346 36.000 0.00 0.00 0.00 3.06
1206 1224 0.815615 GGGCTTGCTTATCTGTCGGG 60.816 60.000 0.00 0.00 0.00 5.14
1209 1227 0.255890 TGGGGGCTTGCTTATCTGTC 59.744 55.000 0.00 0.00 0.00 3.51
1210 1228 0.704076 TTGGGGGCTTGCTTATCTGT 59.296 50.000 0.00 0.00 0.00 3.41
1211 1229 1.341383 ACTTGGGGGCTTGCTTATCTG 60.341 52.381 0.00 0.00 0.00 2.90
1212 1230 1.002857 ACTTGGGGGCTTGCTTATCT 58.997 50.000 0.00 0.00 0.00 1.98
1213 1231 2.092375 ACTACTTGGGGGCTTGCTTATC 60.092 50.000 0.00 0.00 0.00 1.75
1220 1389 2.093128 CGTAATCACTACTTGGGGGCTT 60.093 50.000 0.00 0.00 0.00 4.35
1226 1395 3.096461 CGTCGTCGTAATCACTACTTGG 58.904 50.000 0.00 0.00 0.00 3.61
1241 1410 0.640768 GCAGTGATTACAGCGTCGTC 59.359 55.000 0.00 0.00 29.47 4.20
1260 1429 1.149361 ACACGCGCCGTACAATATGG 61.149 55.000 5.73 0.00 38.32 2.74
1274 1443 4.320348 GGGATCAGTAGTATCAGTACACGC 60.320 50.000 0.00 0.00 33.09 5.34
1275 1444 4.820173 TGGGATCAGTAGTATCAGTACACG 59.180 45.833 0.00 0.00 33.09 4.49
1294 1463 0.469705 GGTTATGGGCATGCATGGGA 60.470 55.000 27.34 0.00 0.00 4.37
1295 1464 1.808531 CGGTTATGGGCATGCATGGG 61.809 60.000 27.34 4.09 0.00 4.00
1334 1503 3.937079 CCCAACAAAATACGTACTCCTCC 59.063 47.826 0.00 0.00 0.00 4.30
1359 1528 3.593442 AAAACTTGATCCTGTGGGTGA 57.407 42.857 0.00 0.00 0.00 4.02
1378 1547 1.152989 ACGGACACGCACGCTAAAAA 61.153 50.000 0.00 0.00 46.04 1.94
1402 1571 3.748048 CCCACATGACCGATCATATCAAC 59.252 47.826 0.00 0.00 44.13 3.18
1445 1614 4.095782 CAGCCGCTAACTAAAATTTGCCTA 59.904 41.667 0.00 0.00 0.00 3.93
1447 1616 3.179048 CAGCCGCTAACTAAAATTTGCC 58.821 45.455 0.00 0.00 0.00 4.52
1512 1681 1.040339 AAGGAGAGCTACGGAGGCAG 61.040 60.000 0.00 0.00 0.00 4.85
1519 1716 1.227002 GCGGGAAAGGAGAGCTACG 60.227 63.158 0.00 0.00 0.00 3.51
1568 1765 6.321181 GTGGATTAATAATGGTTTGAGCAGGA 59.679 38.462 0.00 0.00 0.00 3.86
1583 1780 5.506815 CGTGCGTTAGAGAGGTGGATTAATA 60.507 44.000 0.00 0.00 0.00 0.98
1587 1784 1.135083 CGTGCGTTAGAGAGGTGGATT 60.135 52.381 0.00 0.00 0.00 3.01
1593 1790 3.248171 GCGCGTGCGTTAGAGAGG 61.248 66.667 16.27 0.00 42.09 3.69
1804 2001 1.341531 CCGACTGGTATCTGGATGTCC 59.658 57.143 0.00 0.00 0.00 4.02
1838 2035 3.793144 CCGGCGTCTTGAAGCTGC 61.793 66.667 6.01 0.00 38.36 5.25
1993 2190 2.426522 CCACGAGGTTGATGATGTTGT 58.573 47.619 0.00 0.00 0.00 3.32
1994 2191 1.739466 CCCACGAGGTTGATGATGTTG 59.261 52.381 0.00 0.00 0.00 3.33
2204 2401 2.126071 CGTCCGTGGTGCAGGTAG 60.126 66.667 0.00 0.00 0.00 3.18
2541 2738 0.963962 TCGCTGAAACCTCTACCGTT 59.036 50.000 0.00 0.00 0.00 4.44
2561 2758 2.202570 CGGATGTCCACGACGACC 60.203 66.667 0.00 0.00 34.95 4.79
2570 2767 1.749033 GTCTGGGATCCGGATGTCC 59.251 63.158 24.82 22.35 41.38 4.02
2597 2794 2.456119 CGCCATCTCCTTCACGTGC 61.456 63.158 11.67 0.00 0.00 5.34
2624 2821 3.390521 CACTCCACGCCCAGCCTA 61.391 66.667 0.00 0.00 0.00 3.93
2709 2906 3.195698 GGTGCGACGGAATCAGCC 61.196 66.667 0.00 0.00 0.00 4.85
2726 2923 1.198713 ACATAGTGGGGACTCAGCAG 58.801 55.000 0.00 0.00 0.00 4.24
2761 2958 6.206634 TGCTCTTAGGTGTTACCATGAAAAAG 59.793 38.462 0.00 0.00 41.95 2.27
2764 2961 5.235850 TGCTCTTAGGTGTTACCATGAAA 57.764 39.130 0.00 0.00 41.95 2.69
2770 2967 3.007614 TGGAGTTGCTCTTAGGTGTTACC 59.992 47.826 0.00 0.00 38.99 2.85
2778 2975 3.937706 CACCTCATTGGAGTTGCTCTTAG 59.062 47.826 0.00 0.00 39.64 2.18
2799 2996 2.046700 GGCGGACGAAATGGGTCA 60.047 61.111 0.00 0.00 36.12 4.02
2820 3017 1.202758 TCAGTGCAGACCCAAACGAAT 60.203 47.619 0.00 0.00 0.00 3.34
2822 3019 0.531974 GTCAGTGCAGACCCAAACGA 60.532 55.000 0.00 0.00 32.36 3.85
2838 3035 1.030488 TTGGGCCGTCGTTTTTGTCA 61.030 50.000 0.00 0.00 0.00 3.58
2890 3089 2.478335 AAATGGGTCGGCGTGGACAT 62.478 55.000 6.85 5.07 38.70 3.06
2900 3099 1.803334 TTTGAGACGGAAATGGGTCG 58.197 50.000 0.00 0.00 38.20 4.79
3090 3293 1.378514 AAGGAATTGGCGATGGCGT 60.379 52.632 0.00 0.00 41.24 5.68
3104 3307 3.760035 GTCTCGCCGGAGCAAGGA 61.760 66.667 5.05 0.00 40.26 3.36
3107 3310 3.760035 GGAGTCTCGCCGGAGCAA 61.760 66.667 5.05 0.00 40.26 3.91
3190 3393 4.812476 TTCGATGTGCGGCGGGAG 62.812 66.667 9.78 0.00 41.33 4.30
3197 3400 3.554692 GGAGCCGTTCGATGTGCG 61.555 66.667 0.00 0.00 42.69 5.34
3308 3554 2.245532 GAGCAACACGTCGTGCAC 59.754 61.111 24.80 14.14 36.98 4.57
3421 3667 4.877801 CACCAGAGTGCACGTACTACGG 62.878 59.091 12.01 12.43 40.90 4.02
3422 3668 1.728179 CACCAGAGTGCACGTACTACG 60.728 57.143 12.01 7.07 41.78 3.51
3423 3669 1.978542 CACCAGAGTGCACGTACTAC 58.021 55.000 12.01 0.47 37.14 2.73
3467 3719 2.623416 AGTAGCATCTAGTATGCACGCA 59.377 45.455 21.46 0.00 46.77 5.24
3468 3720 3.290308 AGTAGCATCTAGTATGCACGC 57.710 47.619 21.46 13.84 46.77 5.34
3469 3721 4.407818 GCTAGTAGCATCTAGTATGCACG 58.592 47.826 17.47 10.62 46.77 5.34
3513 3765 1.509644 ATAATGCATCACCAGGCGCG 61.510 55.000 0.00 0.00 0.00 6.86
3514 3766 1.522668 TATAATGCATCACCAGGCGC 58.477 50.000 0.00 0.00 0.00 6.53
3515 3767 4.771590 AAATATAATGCATCACCAGGCG 57.228 40.909 0.00 0.00 0.00 5.52
3516 3768 7.409697 CGTATAAATATAATGCATCACCAGGC 58.590 38.462 0.00 0.00 0.00 4.85
3517 3769 7.768582 TCCGTATAAATATAATGCATCACCAGG 59.231 37.037 0.00 0.00 0.00 4.45
3518 3770 8.716646 TCCGTATAAATATAATGCATCACCAG 57.283 34.615 0.00 0.00 0.00 4.00
3519 3771 9.325198 GATCCGTATAAATATAATGCATCACCA 57.675 33.333 0.00 0.00 0.00 4.17
3520 3772 8.487970 CGATCCGTATAAATATAATGCATCACC 58.512 37.037 0.00 0.00 0.00 4.02
3521 3773 9.031360 ACGATCCGTATAAATATAATGCATCAC 57.969 33.333 0.00 0.00 38.73 3.06
3528 3780 9.538508 GGCCTTTACGATCCGTATAAATATAAT 57.461 33.333 0.00 0.00 41.97 1.28
3529 3781 8.530311 TGGCCTTTACGATCCGTATAAATATAA 58.470 33.333 3.32 0.00 41.97 0.98
3530 3782 8.065473 TGGCCTTTACGATCCGTATAAATATA 57.935 34.615 3.32 0.00 41.97 0.86
3531 3783 6.938507 TGGCCTTTACGATCCGTATAAATAT 58.061 36.000 3.32 0.00 41.97 1.28
3532 3784 6.343716 TGGCCTTTACGATCCGTATAAATA 57.656 37.500 3.32 0.00 41.97 1.40
3533 3785 5.217978 TGGCCTTTACGATCCGTATAAAT 57.782 39.130 3.32 0.00 41.97 1.40
3534 3786 4.669206 TGGCCTTTACGATCCGTATAAA 57.331 40.909 3.32 0.00 41.97 1.40
3535 3787 4.877378 ATGGCCTTTACGATCCGTATAA 57.123 40.909 3.32 0.00 41.97 0.98
3536 3788 4.877378 AATGGCCTTTACGATCCGTATA 57.123 40.909 3.32 0.00 41.97 1.47
3537 3789 3.764237 AATGGCCTTTACGATCCGTAT 57.236 42.857 3.32 0.00 41.97 3.06
3538 3790 3.547054 AAATGGCCTTTACGATCCGTA 57.453 42.857 3.32 0.00 41.54 4.02
3539 3791 2.413310 AAATGGCCTTTACGATCCGT 57.587 45.000 3.32 0.00 44.35 4.69
3540 3792 3.775661 AAAAATGGCCTTTACGATCCG 57.224 42.857 3.32 0.00 0.00 4.18
3541 3793 9.758651 AAAATATAAAAATGGCCTTTACGATCC 57.241 29.630 3.32 0.00 0.00 3.36
3567 3819 9.982291 GTTTTAGTTATGCGATTCTGTCATTAA 57.018 29.630 0.00 0.00 0.00 1.40
3568 3820 8.609176 GGTTTTAGTTATGCGATTCTGTCATTA 58.391 33.333 0.00 0.00 0.00 1.90
3569 3821 7.415206 GGGTTTTAGTTATGCGATTCTGTCATT 60.415 37.037 0.00 0.00 0.00 2.57
3570 3822 6.038271 GGGTTTTAGTTATGCGATTCTGTCAT 59.962 38.462 0.00 0.00 0.00 3.06
3571 3823 5.353123 GGGTTTTAGTTATGCGATTCTGTCA 59.647 40.000 0.00 0.00 0.00 3.58
3572 3824 5.353123 TGGGTTTTAGTTATGCGATTCTGTC 59.647 40.000 0.00 0.00 0.00 3.51
3573 3825 5.250200 TGGGTTTTAGTTATGCGATTCTGT 58.750 37.500 0.00 0.00 0.00 3.41
3574 3826 5.584649 TCTGGGTTTTAGTTATGCGATTCTG 59.415 40.000 0.00 0.00 0.00 3.02
3575 3827 5.741011 TCTGGGTTTTAGTTATGCGATTCT 58.259 37.500 0.00 0.00 0.00 2.40
3576 3828 6.431198 TTCTGGGTTTTAGTTATGCGATTC 57.569 37.500 0.00 0.00 0.00 2.52
3577 3829 6.657541 TCTTTCTGGGTTTTAGTTATGCGATT 59.342 34.615 0.00 0.00 0.00 3.34
3578 3830 6.177610 TCTTTCTGGGTTTTAGTTATGCGAT 58.822 36.000 0.00 0.00 0.00 4.58
3579 3831 5.553123 TCTTTCTGGGTTTTAGTTATGCGA 58.447 37.500 0.00 0.00 0.00 5.10
3580 3832 5.411669 ACTCTTTCTGGGTTTTAGTTATGCG 59.588 40.000 0.00 0.00 0.00 4.73
3581 3833 6.819397 ACTCTTTCTGGGTTTTAGTTATGC 57.181 37.500 0.00 0.00 0.00 3.14
3582 3834 8.622948 AGAACTCTTTCTGGGTTTTAGTTATG 57.377 34.615 0.00 0.00 40.82 1.90
3585 3837 9.470399 TTTTAGAACTCTTTCTGGGTTTTAGTT 57.530 29.630 0.00 0.00 42.41 2.24
3586 3838 9.121658 CTTTTAGAACTCTTTCTGGGTTTTAGT 57.878 33.333 0.00 0.00 42.41 2.24
3587 3839 8.568794 CCTTTTAGAACTCTTTCTGGGTTTTAG 58.431 37.037 0.00 0.00 42.41 1.85
3588 3840 8.057011 ACCTTTTAGAACTCTTTCTGGGTTTTA 58.943 33.333 0.00 0.00 42.41 1.52
3589 3841 6.895756 ACCTTTTAGAACTCTTTCTGGGTTTT 59.104 34.615 0.00 0.00 42.41 2.43
3590 3842 6.321435 CACCTTTTAGAACTCTTTCTGGGTTT 59.679 38.462 0.00 0.00 42.41 3.27
3591 3843 5.828328 CACCTTTTAGAACTCTTTCTGGGTT 59.172 40.000 0.00 0.00 42.41 4.11
3592 3844 5.377478 CACCTTTTAGAACTCTTTCTGGGT 58.623 41.667 0.00 0.00 42.41 4.51
3593 3845 4.762251 CCACCTTTTAGAACTCTTTCTGGG 59.238 45.833 0.00 0.00 42.41 4.45
3594 3846 5.621193 TCCACCTTTTAGAACTCTTTCTGG 58.379 41.667 0.00 0.00 42.41 3.86
3595 3847 7.568199 TTTCCACCTTTTAGAACTCTTTCTG 57.432 36.000 0.00 0.00 42.41 3.02
3596 3848 8.633561 CATTTTCCACCTTTTAGAACTCTTTCT 58.366 33.333 0.00 0.00 44.70 2.52
3597 3849 8.630037 TCATTTTCCACCTTTTAGAACTCTTTC 58.370 33.333 0.00 0.00 0.00 2.62
3598 3850 8.533569 TCATTTTCCACCTTTTAGAACTCTTT 57.466 30.769 0.00 0.00 0.00 2.52
3599 3851 7.780271 ACTCATTTTCCACCTTTTAGAACTCTT 59.220 33.333 0.00 0.00 0.00 2.85
3600 3852 7.290813 ACTCATTTTCCACCTTTTAGAACTCT 58.709 34.615 0.00 0.00 0.00 3.24
3601 3853 7.511959 ACTCATTTTCCACCTTTTAGAACTC 57.488 36.000 0.00 0.00 0.00 3.01
3602 3854 7.996644 TGTACTCATTTTCCACCTTTTAGAACT 59.003 33.333 0.00 0.00 0.00 3.01
3603 3855 8.161699 TGTACTCATTTTCCACCTTTTAGAAC 57.838 34.615 0.00 0.00 0.00 3.01
3604 3856 8.934023 ATGTACTCATTTTCCACCTTTTAGAA 57.066 30.769 0.00 0.00 0.00 2.10
3605 3857 8.934023 AATGTACTCATTTTCCACCTTTTAGA 57.066 30.769 0.00 0.00 40.88 2.10
3619 3871 6.097270 ACATGGCTGCAATAAATGTACTCATT 59.903 34.615 0.50 0.00 44.94 2.57
3620 3872 5.595542 ACATGGCTGCAATAAATGTACTCAT 59.404 36.000 0.50 0.00 35.59 2.90
3621 3873 4.949238 ACATGGCTGCAATAAATGTACTCA 59.051 37.500 0.50 0.00 29.93 3.41
3622 3874 5.505173 ACATGGCTGCAATAAATGTACTC 57.495 39.130 0.50 0.00 29.93 2.59
3623 3875 6.772233 TCATACATGGCTGCAATAAATGTACT 59.228 34.615 0.50 2.68 36.75 2.73
3624 3876 6.969366 TCATACATGGCTGCAATAAATGTAC 58.031 36.000 0.50 0.00 36.75 2.90
3625 3877 7.764141 ATCATACATGGCTGCAATAAATGTA 57.236 32.000 0.50 11.40 37.92 2.29
3626 3878 6.659745 ATCATACATGGCTGCAATAAATGT 57.340 33.333 0.50 5.78 35.70 2.71
3627 3879 9.647797 ATTTATCATACATGGCTGCAATAAATG 57.352 29.630 0.50 3.37 30.77 2.32
3630 3882 9.519191 AGTATTTATCATACATGGCTGCAATAA 57.481 29.630 0.50 0.00 0.00 1.40
3631 3883 8.949177 CAGTATTTATCATACATGGCTGCAATA 58.051 33.333 0.50 0.00 0.00 1.90
3632 3884 7.666804 TCAGTATTTATCATACATGGCTGCAAT 59.333 33.333 0.50 0.00 0.00 3.56
3633 3885 6.997476 TCAGTATTTATCATACATGGCTGCAA 59.003 34.615 0.50 0.00 0.00 4.08
3634 3886 6.532826 TCAGTATTTATCATACATGGCTGCA 58.467 36.000 0.50 0.00 0.00 4.41
3635 3887 7.335171 TCATCAGTATTTATCATACATGGCTGC 59.665 37.037 0.00 0.00 0.00 5.25
3636 3888 8.782339 TCATCAGTATTTATCATACATGGCTG 57.218 34.615 0.00 0.00 0.00 4.85
3637 3889 7.551974 GCTCATCAGTATTTATCATACATGGCT 59.448 37.037 0.00 0.00 0.00 4.75
3638 3890 7.465111 CGCTCATCAGTATTTATCATACATGGC 60.465 40.741 0.00 0.00 0.00 4.40
3639 3891 7.010830 CCGCTCATCAGTATTTATCATACATGG 59.989 40.741 0.00 0.00 0.00 3.66
3640 3892 7.761249 TCCGCTCATCAGTATTTATCATACATG 59.239 37.037 0.00 0.00 0.00 3.21
3641 3893 7.840931 TCCGCTCATCAGTATTTATCATACAT 58.159 34.615 0.00 0.00 0.00 2.29
3642 3894 7.227049 TCCGCTCATCAGTATTTATCATACA 57.773 36.000 0.00 0.00 0.00 2.29
3643 3895 8.534333 TTTCCGCTCATCAGTATTTATCATAC 57.466 34.615 0.00 0.00 0.00 2.39
3644 3896 9.154847 CATTTCCGCTCATCAGTATTTATCATA 57.845 33.333 0.00 0.00 0.00 2.15
3645 3897 7.663081 ACATTTCCGCTCATCAGTATTTATCAT 59.337 33.333 0.00 0.00 0.00 2.45
3646 3898 6.992123 ACATTTCCGCTCATCAGTATTTATCA 59.008 34.615 0.00 0.00 0.00 2.15
3647 3899 7.426929 ACATTTCCGCTCATCAGTATTTATC 57.573 36.000 0.00 0.00 0.00 1.75
3648 3900 7.931407 TGTACATTTCCGCTCATCAGTATTTAT 59.069 33.333 0.00 0.00 0.00 1.40
3649 3901 7.223971 GTGTACATTTCCGCTCATCAGTATTTA 59.776 37.037 0.00 0.00 0.00 1.40
3650 3902 6.037172 GTGTACATTTCCGCTCATCAGTATTT 59.963 38.462 0.00 0.00 0.00 1.40
3651 3903 5.523916 GTGTACATTTCCGCTCATCAGTATT 59.476 40.000 0.00 0.00 0.00 1.89
3652 3904 5.050490 GTGTACATTTCCGCTCATCAGTAT 58.950 41.667 0.00 0.00 0.00 2.12
3653 3905 4.430007 GTGTACATTTCCGCTCATCAGTA 58.570 43.478 0.00 0.00 0.00 2.74
3654 3906 3.262420 GTGTACATTTCCGCTCATCAGT 58.738 45.455 0.00 0.00 0.00 3.41
3655 3907 2.282555 CGTGTACATTTCCGCTCATCAG 59.717 50.000 0.00 0.00 0.00 2.90
3656 3908 2.267426 CGTGTACATTTCCGCTCATCA 58.733 47.619 0.00 0.00 0.00 3.07
3657 3909 1.004927 GCGTGTACATTTCCGCTCATC 60.005 52.381 18.17 0.00 42.66 2.92
3658 3910 1.006832 GCGTGTACATTTCCGCTCAT 58.993 50.000 18.17 0.00 42.66 2.90
3659 3911 2.451693 GCGTGTACATTTCCGCTCA 58.548 52.632 18.17 0.00 42.66 4.26
3662 3914 1.636988 AGTAGCGTGTACATTTCCGC 58.363 50.000 17.87 17.87 46.07 5.54
3663 3915 6.143438 CCTTATTAGTAGCGTGTACATTTCCG 59.857 42.308 0.00 0.00 0.00 4.30
3664 3916 6.982724 ACCTTATTAGTAGCGTGTACATTTCC 59.017 38.462 0.00 0.00 0.00 3.13
3665 3917 7.919621 AGACCTTATTAGTAGCGTGTACATTTC 59.080 37.037 0.00 0.00 0.00 2.17
3666 3918 7.779073 AGACCTTATTAGTAGCGTGTACATTT 58.221 34.615 0.00 0.00 0.00 2.32
3667 3919 7.344095 AGACCTTATTAGTAGCGTGTACATT 57.656 36.000 0.00 0.00 0.00 2.71
3668 3920 6.956202 AGACCTTATTAGTAGCGTGTACAT 57.044 37.500 0.00 0.00 0.00 2.29
3669 3921 7.050377 AGTAGACCTTATTAGTAGCGTGTACA 58.950 38.462 0.00 0.00 0.00 2.90
3670 3922 7.489574 AGTAGACCTTATTAGTAGCGTGTAC 57.510 40.000 0.00 0.00 0.00 2.90
3671 3923 9.784531 ATAAGTAGACCTTATTAGTAGCGTGTA 57.215 33.333 0.00 0.00 42.51 2.90
3672 3924 8.688747 ATAAGTAGACCTTATTAGTAGCGTGT 57.311 34.615 0.00 0.00 42.51 4.49
3685 3937 8.934697 TCTATAATGTGCCAATAAGTAGACCTT 58.065 33.333 0.00 0.00 37.17 3.50
3686 3938 8.492415 TCTATAATGTGCCAATAAGTAGACCT 57.508 34.615 0.00 0.00 0.00 3.85
3687 3939 8.585881 TCTCTATAATGTGCCAATAAGTAGACC 58.414 37.037 0.00 0.00 0.00 3.85
3688 3940 9.413048 GTCTCTATAATGTGCCAATAAGTAGAC 57.587 37.037 0.00 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.