Multiple sequence alignment - TraesCS3D01G400100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G400100 chr3D 100.000 3064 0 0 1 3064 515005829 515008892 0.000000e+00 5659.0
1 TraesCS3D01G400100 chr3D 93.825 1166 67 3 1341 2503 448612884 448614047 0.000000e+00 1749.0
2 TraesCS3D01G400100 chr3D 90.287 1287 94 21 103 1365 6531577 6530298 0.000000e+00 1655.0
3 TraesCS3D01G400100 chr3D 87.730 1304 101 31 107 1354 449745984 449747284 0.000000e+00 1467.0
4 TraesCS3D01G400100 chr6A 90.473 1732 141 17 693 2412 497727032 497728751 0.000000e+00 2263.0
5 TraesCS3D01G400100 chr3A 94.168 1166 65 2 1341 2503 418765104 418763939 0.000000e+00 1773.0
6 TraesCS3D01G400100 chr3A 88.587 1288 101 16 103 1365 418766265 418764999 0.000000e+00 1522.0
7 TraesCS3D01G400100 chr3A 81.614 979 108 29 111 1024 730096265 730097236 0.000000e+00 745.0
8 TraesCS3D01G400100 chr3A 78.511 591 91 24 245 813 589400455 589399879 3.760000e-94 355.0
9 TraesCS3D01G400100 chr3A 84.227 317 26 7 111 403 730523160 730523476 1.390000e-73 287.0
10 TraesCS3D01G400100 chr3A 91.146 192 14 2 2874 3064 649707982 649708171 1.090000e-64 257.0
11 TraesCS3D01G400100 chr3A 88.670 203 22 1 245 447 600309855 600309654 2.360000e-61 246.0
12 TraesCS3D01G400100 chr3A 88.462 182 21 0 245 426 598888995 598888814 1.430000e-53 220.0
13 TraesCS3D01G400100 chr3A 90.361 83 7 1 7 89 649635359 649635440 1.160000e-19 108.0
14 TraesCS3D01G400100 chr4D 93.659 1167 68 6 1341 2503 116524006 116522842 0.000000e+00 1740.0
15 TraesCS3D01G400100 chr4D 92.797 1180 77 6 1341 2513 493970559 493969381 0.000000e+00 1701.0
16 TraesCS3D01G400100 chr4D 92.618 1165 81 3 1341 2502 421048080 421046918 0.000000e+00 1670.0
17 TraesCS3D01G400100 chr4D 88.880 1304 90 22 103 1356 414224955 414226253 0.000000e+00 1554.0
18 TraesCS3D01G400100 chr4D 87.285 1282 121 15 103 1365 116525159 116523901 0.000000e+00 1426.0
19 TraesCS3D01G400100 chr2A 92.906 1170 70 7 1341 2503 456461960 456460797 0.000000e+00 1688.0
20 TraesCS3D01G400100 chr2A 86.207 667 59 6 103 736 769257721 769258387 0.000000e+00 691.0
21 TraesCS3D01G400100 chr5A 92.539 1166 83 3 1341 2503 604231505 604230341 0.000000e+00 1668.0
22 TraesCS3D01G400100 chr5A 89.787 1126 94 15 247 1356 604232530 604231410 0.000000e+00 1423.0
23 TraesCS3D01G400100 chr5A 86.449 214 18 2 245 448 365660135 365660347 1.110000e-54 224.0
24 TraesCS3D01G400100 chr1A 92.216 1169 85 5 1341 2503 327011368 327010200 0.000000e+00 1650.0
25 TraesCS3D01G400100 chr1A 88.603 1281 107 15 104 1356 238074342 238075611 0.000000e+00 1520.0
26 TraesCS3D01G400100 chr2B 88.358 1297 112 20 103 1365 713705370 713704079 0.000000e+00 1522.0
27 TraesCS3D01G400100 chr2B 91.011 979 79 7 383 1354 459481348 459480372 0.000000e+00 1312.0
28 TraesCS3D01G400100 chr6D 88.006 1284 119 18 104 1356 450905332 450906611 0.000000e+00 1485.0
29 TraesCS3D01G400100 chr7B 87.665 1289 117 15 108 1356 238000519 238001805 0.000000e+00 1461.0
30 TraesCS3D01G400100 chr7B 100.000 29 0 0 2580 2608 595572963 595572991 2.000000e-03 54.7
31 TraesCS3D01G400100 chr3B 87.007 1293 130 13 103 1365 61877870 61876586 0.000000e+00 1423.0
32 TraesCS3D01G400100 chr3B 85.240 813 83 18 103 897 594819048 594818255 0.000000e+00 802.0
33 TraesCS3D01G400100 chr3B 93.506 385 19 6 2684 3064 677732858 677733240 4.430000e-158 568.0
34 TraesCS3D01G400100 chr3B 92.222 90 5 2 2541 2629 677723433 677723521 3.210000e-25 126.0
35 TraesCS3D01G400100 chr3B 100.000 28 0 0 2585 2612 803839092 803839119 6.000000e-03 52.8
36 TraesCS3D01G400100 chr3B 96.875 32 0 1 2582 2612 803845514 803845545 6.000000e-03 52.8
37 TraesCS3D01G400100 chr4A 87.154 1300 106 20 103 1356 60890968 60892252 0.000000e+00 1419.0
38 TraesCS3D01G400100 chr4A 86.754 1291 132 13 103 1356 19186579 19185291 0.000000e+00 1400.0
39 TraesCS3D01G400100 chr4B 86.687 1307 108 27 103 1354 656167792 656166497 0.000000e+00 1389.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G400100 chr3D 515005829 515008892 3063 False 5659.0 5659 100.0000 1 3064 1 chr3D.!!$F3 3063
1 TraesCS3D01G400100 chr3D 448612884 448614047 1163 False 1749.0 1749 93.8250 1341 2503 1 chr3D.!!$F1 1162
2 TraesCS3D01G400100 chr3D 6530298 6531577 1279 True 1655.0 1655 90.2870 103 1365 1 chr3D.!!$R1 1262
3 TraesCS3D01G400100 chr3D 449745984 449747284 1300 False 1467.0 1467 87.7300 107 1354 1 chr3D.!!$F2 1247
4 TraesCS3D01G400100 chr6A 497727032 497728751 1719 False 2263.0 2263 90.4730 693 2412 1 chr6A.!!$F1 1719
5 TraesCS3D01G400100 chr3A 418763939 418766265 2326 True 1647.5 1773 91.3775 103 2503 2 chr3A.!!$R4 2400
6 TraesCS3D01G400100 chr3A 730096265 730097236 971 False 745.0 745 81.6140 111 1024 1 chr3A.!!$F3 913
7 TraesCS3D01G400100 chr3A 589399879 589400455 576 True 355.0 355 78.5110 245 813 1 chr3A.!!$R1 568
8 TraesCS3D01G400100 chr4D 493969381 493970559 1178 True 1701.0 1701 92.7970 1341 2513 1 chr4D.!!$R2 1172
9 TraesCS3D01G400100 chr4D 421046918 421048080 1162 True 1670.0 1670 92.6180 1341 2502 1 chr4D.!!$R1 1161
10 TraesCS3D01G400100 chr4D 116522842 116525159 2317 True 1583.0 1740 90.4720 103 2503 2 chr4D.!!$R3 2400
11 TraesCS3D01G400100 chr4D 414224955 414226253 1298 False 1554.0 1554 88.8800 103 1356 1 chr4D.!!$F1 1253
12 TraesCS3D01G400100 chr2A 456460797 456461960 1163 True 1688.0 1688 92.9060 1341 2503 1 chr2A.!!$R1 1162
13 TraesCS3D01G400100 chr2A 769257721 769258387 666 False 691.0 691 86.2070 103 736 1 chr2A.!!$F1 633
14 TraesCS3D01G400100 chr5A 604230341 604232530 2189 True 1545.5 1668 91.1630 247 2503 2 chr5A.!!$R1 2256
15 TraesCS3D01G400100 chr1A 327010200 327011368 1168 True 1650.0 1650 92.2160 1341 2503 1 chr1A.!!$R1 1162
16 TraesCS3D01G400100 chr1A 238074342 238075611 1269 False 1520.0 1520 88.6030 104 1356 1 chr1A.!!$F1 1252
17 TraesCS3D01G400100 chr2B 713704079 713705370 1291 True 1522.0 1522 88.3580 103 1365 1 chr2B.!!$R2 1262
18 TraesCS3D01G400100 chr2B 459480372 459481348 976 True 1312.0 1312 91.0110 383 1354 1 chr2B.!!$R1 971
19 TraesCS3D01G400100 chr6D 450905332 450906611 1279 False 1485.0 1485 88.0060 104 1356 1 chr6D.!!$F1 1252
20 TraesCS3D01G400100 chr7B 238000519 238001805 1286 False 1461.0 1461 87.6650 108 1356 1 chr7B.!!$F1 1248
21 TraesCS3D01G400100 chr3B 61876586 61877870 1284 True 1423.0 1423 87.0070 103 1365 1 chr3B.!!$R1 1262
22 TraesCS3D01G400100 chr3B 594818255 594819048 793 True 802.0 802 85.2400 103 897 1 chr3B.!!$R2 794
23 TraesCS3D01G400100 chr4A 60890968 60892252 1284 False 1419.0 1419 87.1540 103 1356 1 chr4A.!!$F1 1253
24 TraesCS3D01G400100 chr4A 19185291 19186579 1288 True 1400.0 1400 86.7540 103 1356 1 chr4A.!!$R1 1253
25 TraesCS3D01G400100 chr4B 656166497 656167792 1295 True 1389.0 1389 86.6870 103 1354 1 chr4B.!!$R1 1251

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
79 80 0.035739 TTACCCTTCGACCACAAGCC 59.964 55.0 0.0 0.0 0.0 4.35 F
1314 1522 0.253020 AGGGGGTGGGTAAGTAGTGG 60.253 60.0 0.0 0.0 0.0 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1336 1544 0.103937 CTTCCTCCTCTCCATCACGC 59.896 60.0 0.0 0.0 0.0 5.34 R
2705 3099 0.031585 TGACAGTTTCTCCACGACGG 59.968 55.0 0.0 0.0 0.0 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 2.669569 GCCTCGCCAGAGTTGCAA 60.670 61.111 0.00 0.00 42.86 4.08
31 32 2.260869 GCCTCGCCAGAGTTGCAAA 61.261 57.895 0.00 0.00 42.86 3.68
32 33 1.871772 CCTCGCCAGAGTTGCAAAG 59.128 57.895 0.00 0.00 42.86 2.77
33 34 1.580845 CCTCGCCAGAGTTGCAAAGG 61.581 60.000 0.00 2.17 42.86 3.11
34 35 1.580845 CTCGCCAGAGTTGCAAAGGG 61.581 60.000 0.00 1.33 39.60 3.95
35 36 1.600636 CGCCAGAGTTGCAAAGGGA 60.601 57.895 0.00 0.00 0.00 4.20
36 37 1.172180 CGCCAGAGTTGCAAAGGGAA 61.172 55.000 0.00 0.00 0.00 3.97
37 38 1.039856 GCCAGAGTTGCAAAGGGAAA 58.960 50.000 0.00 0.00 0.00 3.13
38 39 1.412343 GCCAGAGTTGCAAAGGGAAAA 59.588 47.619 0.00 0.00 0.00 2.29
39 40 2.546584 GCCAGAGTTGCAAAGGGAAAAG 60.547 50.000 0.00 0.00 0.00 2.27
40 41 2.546584 CCAGAGTTGCAAAGGGAAAAGC 60.547 50.000 0.00 0.00 0.00 3.51
41 42 1.688735 AGAGTTGCAAAGGGAAAAGCC 59.311 47.619 0.00 0.00 0.00 4.35
50 51 2.885113 GGAAAAGCCCCACGCATC 59.115 61.111 0.00 0.00 41.38 3.91
51 52 2.710902 GGAAAAGCCCCACGCATCC 61.711 63.158 0.00 0.00 41.38 3.51
52 53 1.976474 GAAAAGCCCCACGCATCCA 60.976 57.895 0.00 0.00 41.38 3.41
53 54 1.305213 AAAAGCCCCACGCATCCAT 60.305 52.632 0.00 0.00 41.38 3.41
54 55 1.322538 AAAAGCCCCACGCATCCATC 61.323 55.000 0.00 0.00 41.38 3.51
55 56 3.721370 AAGCCCCACGCATCCATCC 62.721 63.158 0.00 0.00 41.38 3.51
56 57 4.504596 GCCCCACGCATCCATCCA 62.505 66.667 0.00 0.00 37.47 3.41
57 58 2.517414 CCCCACGCATCCATCCAT 59.483 61.111 0.00 0.00 0.00 3.41
58 59 1.601759 CCCCACGCATCCATCCATC 60.602 63.158 0.00 0.00 0.00 3.51
59 60 1.148949 CCCACGCATCCATCCATCA 59.851 57.895 0.00 0.00 0.00 3.07
60 61 0.251033 CCCACGCATCCATCCATCAT 60.251 55.000 0.00 0.00 0.00 2.45
61 62 1.612676 CCACGCATCCATCCATCATT 58.387 50.000 0.00 0.00 0.00 2.57
62 63 2.552809 CCCACGCATCCATCCATCATTA 60.553 50.000 0.00 0.00 0.00 1.90
63 64 2.485426 CCACGCATCCATCCATCATTAC 59.515 50.000 0.00 0.00 0.00 1.89
64 65 2.485426 CACGCATCCATCCATCATTACC 59.515 50.000 0.00 0.00 0.00 2.85
65 66 2.086869 CGCATCCATCCATCATTACCC 58.913 52.381 0.00 0.00 0.00 3.69
66 67 2.290514 CGCATCCATCCATCATTACCCT 60.291 50.000 0.00 0.00 0.00 4.34
67 68 3.771216 GCATCCATCCATCATTACCCTT 58.229 45.455 0.00 0.00 0.00 3.95
68 69 3.760684 GCATCCATCCATCATTACCCTTC 59.239 47.826 0.00 0.00 0.00 3.46
69 70 3.769739 TCCATCCATCATTACCCTTCG 57.230 47.619 0.00 0.00 0.00 3.79
70 71 3.313791 TCCATCCATCATTACCCTTCGA 58.686 45.455 0.00 0.00 0.00 3.71
71 72 3.071023 TCCATCCATCATTACCCTTCGAC 59.929 47.826 0.00 0.00 0.00 4.20
72 73 3.403038 CATCCATCATTACCCTTCGACC 58.597 50.000 0.00 0.00 0.00 4.79
73 74 2.473070 TCCATCATTACCCTTCGACCA 58.527 47.619 0.00 0.00 0.00 4.02
74 75 2.169769 TCCATCATTACCCTTCGACCAC 59.830 50.000 0.00 0.00 0.00 4.16
75 76 2.093181 CCATCATTACCCTTCGACCACA 60.093 50.000 0.00 0.00 0.00 4.17
76 77 3.605634 CATCATTACCCTTCGACCACAA 58.394 45.455 0.00 0.00 0.00 3.33
77 78 3.328382 TCATTACCCTTCGACCACAAG 57.672 47.619 0.00 0.00 0.00 3.16
78 79 1.737793 CATTACCCTTCGACCACAAGC 59.262 52.381 0.00 0.00 0.00 4.01
79 80 0.035739 TTACCCTTCGACCACAAGCC 59.964 55.000 0.00 0.00 0.00 4.35
80 81 0.834687 TACCCTTCGACCACAAGCCT 60.835 55.000 0.00 0.00 0.00 4.58
81 82 1.672356 CCCTTCGACCACAAGCCTG 60.672 63.158 0.00 0.00 0.00 4.85
82 83 2.328099 CCTTCGACCACAAGCCTGC 61.328 63.158 0.00 0.00 0.00 4.85
83 84 2.664851 TTCGACCACAAGCCTGCG 60.665 61.111 0.00 0.00 0.00 5.18
84 85 3.158537 TTCGACCACAAGCCTGCGA 62.159 57.895 0.00 0.00 0.00 5.10
85 86 2.652382 TTCGACCACAAGCCTGCGAA 62.652 55.000 0.00 0.00 35.69 4.70
86 87 2.250939 CGACCACAAGCCTGCGAAA 61.251 57.895 0.00 0.00 0.00 3.46
87 88 1.282875 GACCACAAGCCTGCGAAAC 59.717 57.895 0.00 0.00 0.00 2.78
88 89 2.252260 CCACAAGCCTGCGAAACG 59.748 61.111 0.00 0.00 0.00 3.60
89 90 2.252260 CACAAGCCTGCGAAACGG 59.748 61.111 0.00 0.00 0.00 4.44
95 96 3.486263 CCTGCGAAACGGGTGATC 58.514 61.111 0.00 0.00 40.35 2.92
96 97 1.079127 CCTGCGAAACGGGTGATCT 60.079 57.895 0.00 0.00 40.35 2.75
97 98 0.673644 CCTGCGAAACGGGTGATCTT 60.674 55.000 0.00 0.00 40.35 2.40
98 99 0.721718 CTGCGAAACGGGTGATCTTC 59.278 55.000 0.00 0.00 0.00 2.87
99 100 0.320374 TGCGAAACGGGTGATCTTCT 59.680 50.000 0.00 0.00 0.00 2.85
100 101 1.000145 GCGAAACGGGTGATCTTCTC 59.000 55.000 0.00 0.00 0.00 2.87
101 102 1.671850 GCGAAACGGGTGATCTTCTCA 60.672 52.381 0.00 0.00 0.00 3.27
209 210 0.802494 ATGGCACGAACCTTAAAGCG 59.198 50.000 0.00 0.00 0.00 4.68
371 419 2.641746 CCTCTCCCCACTCTCCCCT 61.642 68.421 0.00 0.00 0.00 4.79
372 420 1.382420 CTCTCCCCACTCTCCCCTG 60.382 68.421 0.00 0.00 0.00 4.45
373 421 2.174876 CTCTCCCCACTCTCCCCTGT 62.175 65.000 0.00 0.00 0.00 4.00
374 422 1.229658 CTCCCCACTCTCCCCTGTT 60.230 63.158 0.00 0.00 0.00 3.16
375 423 1.538876 TCCCCACTCTCCCCTGTTG 60.539 63.158 0.00 0.00 0.00 3.33
376 424 1.847968 CCCCACTCTCCCCTGTTGT 60.848 63.158 0.00 0.00 0.00 3.32
377 425 1.679898 CCCACTCTCCCCTGTTGTC 59.320 63.158 0.00 0.00 0.00 3.18
378 426 1.679898 CCACTCTCCCCTGTTGTCC 59.320 63.158 0.00 0.00 0.00 4.02
379 427 1.679898 CACTCTCCCCTGTTGTCCC 59.320 63.158 0.00 0.00 0.00 4.46
380 428 0.838122 CACTCTCCCCTGTTGTCCCT 60.838 60.000 0.00 0.00 0.00 4.20
520 587 3.663493 GCACTACTTTTTCGCGTTCGATT 60.663 43.478 5.77 0.00 45.04 3.34
524 591 1.125384 CTTTTTCGCGTTCGATTCGGA 59.875 47.619 5.77 0.00 45.04 4.55
549 618 4.726035 AGATTCAATCCATGGCAGAGAT 57.274 40.909 6.96 0.00 0.00 2.75
590 689 8.128322 AGGTAGATAAGCATGGTAGTTCATAG 57.872 38.462 0.00 0.00 0.00 2.23
591 690 7.730784 AGGTAGATAAGCATGGTAGTTCATAGT 59.269 37.037 0.00 0.00 0.00 2.12
625 788 5.862845 AGTTCATGCAAGATCGGAATAGAT 58.137 37.500 0.00 0.00 0.00 1.98
687 872 3.584868 GACACTGGCTAACCGCGGT 62.585 63.158 28.70 28.70 40.44 5.68
779 970 2.981909 TGGGTCGTCGTCGCTCTT 60.982 61.111 7.90 0.00 36.96 2.85
972 1171 1.194781 TGGACCACCTCTTCCTCTGC 61.195 60.000 0.00 0.00 37.04 4.26
1076 1275 1.070309 CGTCTTCAACTCTTGTGCAGC 60.070 52.381 0.00 0.00 0.00 5.25
1314 1522 0.253020 AGGGGGTGGGTAAGTAGTGG 60.253 60.000 0.00 0.00 0.00 4.00
1315 1523 0.548439 GGGGGTGGGTAAGTAGTGGT 60.548 60.000 0.00 0.00 0.00 4.16
1316 1524 0.616891 GGGGTGGGTAAGTAGTGGTG 59.383 60.000 0.00 0.00 0.00 4.17
1317 1525 0.616891 GGGTGGGTAAGTAGTGGTGG 59.383 60.000 0.00 0.00 0.00 4.61
1318 1526 0.616891 GGTGGGTAAGTAGTGGTGGG 59.383 60.000 0.00 0.00 0.00 4.61
1319 1527 1.355112 GTGGGTAAGTAGTGGTGGGT 58.645 55.000 0.00 0.00 0.00 4.51
1320 1528 2.539302 GTGGGTAAGTAGTGGTGGGTA 58.461 52.381 0.00 0.00 0.00 3.69
1321 1529 2.498885 GTGGGTAAGTAGTGGTGGGTAG 59.501 54.545 0.00 0.00 0.00 3.18
1322 1530 2.113807 GGGTAAGTAGTGGTGGGTAGG 58.886 57.143 0.00 0.00 0.00 3.18
1323 1531 2.113807 GGTAAGTAGTGGTGGGTAGGG 58.886 57.143 0.00 0.00 0.00 3.53
1324 1532 2.560613 GGTAAGTAGTGGTGGGTAGGGT 60.561 54.545 0.00 0.00 0.00 4.34
1325 1533 1.652947 AAGTAGTGGTGGGTAGGGTG 58.347 55.000 0.00 0.00 0.00 4.61
1326 1534 0.788383 AGTAGTGGTGGGTAGGGTGA 59.212 55.000 0.00 0.00 0.00 4.02
1327 1535 1.192428 GTAGTGGTGGGTAGGGTGAG 58.808 60.000 0.00 0.00 0.00 3.51
1328 1536 0.788383 TAGTGGTGGGTAGGGTGAGT 59.212 55.000 0.00 0.00 0.00 3.41
1329 1537 0.788383 AGTGGTGGGTAGGGTGAGTA 59.212 55.000 0.00 0.00 0.00 2.59
1330 1538 1.150560 AGTGGTGGGTAGGGTGAGTAA 59.849 52.381 0.00 0.00 0.00 2.24
1331 1539 1.980036 GTGGTGGGTAGGGTGAGTAAA 59.020 52.381 0.00 0.00 0.00 2.01
1332 1540 2.574824 GTGGTGGGTAGGGTGAGTAAAT 59.425 50.000 0.00 0.00 0.00 1.40
1333 1541 3.009805 GTGGTGGGTAGGGTGAGTAAATT 59.990 47.826 0.00 0.00 0.00 1.82
1334 1542 4.225717 GTGGTGGGTAGGGTGAGTAAATTA 59.774 45.833 0.00 0.00 0.00 1.40
1335 1543 4.472108 TGGTGGGTAGGGTGAGTAAATTAG 59.528 45.833 0.00 0.00 0.00 1.73
1336 1544 4.141551 GGTGGGTAGGGTGAGTAAATTAGG 60.142 50.000 0.00 0.00 0.00 2.69
1337 1545 3.457012 TGGGTAGGGTGAGTAAATTAGGC 59.543 47.826 0.00 0.00 0.00 3.93
1338 1546 3.493873 GGGTAGGGTGAGTAAATTAGGCG 60.494 52.174 0.00 0.00 0.00 5.52
1339 1547 3.133542 GGTAGGGTGAGTAAATTAGGCGT 59.866 47.826 0.00 0.00 0.00 5.68
1474 1847 9.262472 CGTTTTAACTACATGCTCTTCAATAAC 57.738 33.333 0.00 0.00 0.00 1.89
1792 2172 1.616921 CCATGCCCCTGGACTTCAT 59.383 57.895 0.00 0.00 38.69 2.57
1805 2187 2.808543 GGACTTCATCAAGCACTTCGTT 59.191 45.455 0.00 0.00 32.09 3.85
2028 2410 0.254462 TGAGGTGGTCAACAAGTGCA 59.746 50.000 0.00 0.00 29.64 4.57
2154 2545 6.736123 ACTATCGTTATGATGTGTGGTACTC 58.264 40.000 0.00 0.00 37.99 2.59
2222 2613 3.196254 TCTGCTCTGCTTATGATGTGTGA 59.804 43.478 0.00 0.00 0.00 3.58
2245 2636 0.465460 ATGGTTGTGCCGAAGTGTGT 60.465 50.000 0.00 0.00 41.21 3.72
2352 2745 0.760189 ATGCAGGCAACCAAACACCT 60.760 50.000 0.00 0.00 37.17 4.00
2408 2801 4.793071 CATGCCGTCAATCAAACAACTTA 58.207 39.130 0.00 0.00 0.00 2.24
2423 2816 6.892658 AACAACTTACAGATGGTGCATTTA 57.107 33.333 0.00 0.00 0.00 1.40
2486 2880 5.614308 TGCAATGCAGCTATTGTAGACTAT 58.386 37.500 2.72 0.00 39.62 2.12
2506 2900 2.051345 CAACCAAACACGCCGCTC 60.051 61.111 0.00 0.00 0.00 5.03
2516 2910 2.430921 CGCCGCTCGTGTTTCTCT 60.431 61.111 0.00 0.00 0.00 3.10
2517 2911 2.437343 CGCCGCTCGTGTTTCTCTC 61.437 63.158 0.00 0.00 0.00 3.20
2518 2912 1.372997 GCCGCTCGTGTTTCTCTCA 60.373 57.895 0.00 0.00 0.00 3.27
2519 2913 0.737715 GCCGCTCGTGTTTCTCTCAT 60.738 55.000 0.00 0.00 0.00 2.90
2520 2914 1.469251 GCCGCTCGTGTTTCTCTCATA 60.469 52.381 0.00 0.00 0.00 2.15
2521 2915 2.455032 CCGCTCGTGTTTCTCTCATAG 58.545 52.381 0.00 0.00 0.00 2.23
2522 2916 2.097629 CCGCTCGTGTTTCTCTCATAGA 59.902 50.000 0.00 0.00 0.00 1.98
2523 2917 3.427638 CCGCTCGTGTTTCTCTCATAGAA 60.428 47.826 0.00 0.00 42.62 2.10
2540 2934 9.784680 TCTCATAGAAAATACTACGTTTGAGAC 57.215 33.333 0.00 0.00 33.61 3.36
2552 2946 2.590276 CGTTTGAGACGTGATCTTCTCG 59.410 50.000 0.00 6.78 46.49 4.04
2554 2948 2.902065 TGAGACGTGATCTTCTCGTG 57.098 50.000 9.06 0.00 45.03 4.35
2555 2949 2.152016 TGAGACGTGATCTTCTCGTGT 58.848 47.619 9.06 5.55 45.03 4.49
2556 2950 2.552743 TGAGACGTGATCTTCTCGTGTT 59.447 45.455 9.06 0.00 45.03 3.32
2557 2951 3.004419 TGAGACGTGATCTTCTCGTGTTT 59.996 43.478 9.06 0.00 45.03 2.83
2558 2952 3.978687 AGACGTGATCTTCTCGTGTTTT 58.021 40.909 9.06 0.00 45.03 2.43
2559 2953 4.369182 AGACGTGATCTTCTCGTGTTTTT 58.631 39.130 9.06 0.00 45.03 1.94
2560 2954 4.444720 AGACGTGATCTTCTCGTGTTTTTC 59.555 41.667 9.06 0.00 45.03 2.29
2561 2955 4.369182 ACGTGATCTTCTCGTGTTTTTCT 58.631 39.130 4.08 0.00 43.67 2.52
2562 2956 4.444720 ACGTGATCTTCTCGTGTTTTTCTC 59.555 41.667 4.08 0.00 43.67 2.87
2563 2957 4.431728 CGTGATCTTCTCGTGTTTTTCTCG 60.432 45.833 0.00 0.00 34.85 4.04
2564 2958 4.444720 GTGATCTTCTCGTGTTTTTCTCGT 59.555 41.667 0.00 0.00 35.06 4.18
2565 2959 5.628193 GTGATCTTCTCGTGTTTTTCTCGTA 59.372 40.000 0.00 0.00 35.06 3.43
2566 2960 6.143438 GTGATCTTCTCGTGTTTTTCTCGTAA 59.857 38.462 0.00 0.00 35.06 3.18
2567 2961 6.698329 TGATCTTCTCGTGTTTTTCTCGTAAA 59.302 34.615 0.00 0.00 35.06 2.01
2568 2962 6.890663 TCTTCTCGTGTTTTTCTCGTAAAA 57.109 33.333 0.00 0.00 35.06 1.52
2569 2963 7.293402 TCTTCTCGTGTTTTTCTCGTAAAAA 57.707 32.000 6.95 6.95 35.06 1.94
2596 2990 8.827177 TGTAGTTAGTTGAGACACCTATTTTG 57.173 34.615 0.00 0.00 0.00 2.44
2597 2991 8.644216 TGTAGTTAGTTGAGACACCTATTTTGA 58.356 33.333 0.00 0.00 0.00 2.69
2598 2992 9.141400 GTAGTTAGTTGAGACACCTATTTTGAG 57.859 37.037 0.00 0.00 0.00 3.02
2599 2993 7.963532 AGTTAGTTGAGACACCTATTTTGAGA 58.036 34.615 0.00 0.00 0.00 3.27
2600 2994 7.873505 AGTTAGTTGAGACACCTATTTTGAGAC 59.126 37.037 0.00 0.00 0.00 3.36
2601 2995 6.174720 AGTTGAGACACCTATTTTGAGACA 57.825 37.500 0.00 0.00 0.00 3.41
2602 2996 6.226787 AGTTGAGACACCTATTTTGAGACAG 58.773 40.000 0.00 0.00 0.00 3.51
2603 2997 6.042093 AGTTGAGACACCTATTTTGAGACAGA 59.958 38.462 0.00 0.00 0.00 3.41
2604 2998 6.030548 TGAGACACCTATTTTGAGACAGAG 57.969 41.667 0.00 0.00 0.00 3.35
2605 2999 5.047021 TGAGACACCTATTTTGAGACAGAGG 60.047 44.000 0.00 0.00 0.00 3.69
2606 3000 4.223923 AGACACCTATTTTGAGACAGAGGG 59.776 45.833 0.00 0.00 0.00 4.30
2607 3001 4.168101 ACACCTATTTTGAGACAGAGGGA 58.832 43.478 0.00 0.00 0.00 4.20
2608 3002 4.223923 ACACCTATTTTGAGACAGAGGGAG 59.776 45.833 0.00 0.00 0.00 4.30
2609 3003 4.223923 CACCTATTTTGAGACAGAGGGAGT 59.776 45.833 0.00 0.00 0.00 3.85
2610 3004 5.422331 CACCTATTTTGAGACAGAGGGAGTA 59.578 44.000 0.00 0.00 0.00 2.59
2611 3005 6.098982 CACCTATTTTGAGACAGAGGGAGTAT 59.901 42.308 0.00 0.00 0.00 2.12
2612 3006 6.098982 ACCTATTTTGAGACAGAGGGAGTATG 59.901 42.308 0.00 0.00 0.00 2.39
2613 3007 6.098982 CCTATTTTGAGACAGAGGGAGTATGT 59.901 42.308 0.00 0.00 31.51 2.29
2614 3008 5.825593 TTTTGAGACAGAGGGAGTATGTT 57.174 39.130 0.00 0.00 27.90 2.71
2615 3009 4.808414 TTGAGACAGAGGGAGTATGTTG 57.192 45.455 0.00 0.00 27.90 3.33
2616 3010 4.047627 TGAGACAGAGGGAGTATGTTGA 57.952 45.455 0.00 0.00 27.90 3.18
2617 3011 4.614475 TGAGACAGAGGGAGTATGTTGAT 58.386 43.478 0.00 0.00 27.90 2.57
2618 3012 4.646945 TGAGACAGAGGGAGTATGTTGATC 59.353 45.833 0.00 0.00 27.90 2.92
2619 3013 4.614475 AGACAGAGGGAGTATGTTGATCA 58.386 43.478 0.00 0.00 27.90 2.92
2620 3014 5.026121 AGACAGAGGGAGTATGTTGATCAA 58.974 41.667 3.38 3.38 27.90 2.57
2621 3015 5.091261 ACAGAGGGAGTATGTTGATCAAC 57.909 43.478 28.10 28.10 41.50 3.18
2622 3016 4.780021 ACAGAGGGAGTATGTTGATCAACT 59.220 41.667 32.57 22.18 41.67 3.16
2623 3017 5.114780 CAGAGGGAGTATGTTGATCAACTG 58.885 45.833 32.57 18.01 41.67 3.16
2624 3018 5.026121 AGAGGGAGTATGTTGATCAACTGA 58.974 41.667 32.57 20.56 41.67 3.41
2625 3019 5.664908 AGAGGGAGTATGTTGATCAACTGAT 59.335 40.000 32.57 23.02 41.67 2.90
2635 3029 2.200792 ATCAACTGATCAGCTCGTCG 57.799 50.000 22.83 5.11 0.00 5.12
2636 3030 0.881796 TCAACTGATCAGCTCGTCGT 59.118 50.000 22.83 0.00 0.00 4.34
2637 3031 0.987715 CAACTGATCAGCTCGTCGTG 59.012 55.000 22.83 5.88 0.00 4.35
2638 3032 0.109086 AACTGATCAGCTCGTCGTGG 60.109 55.000 22.83 0.00 0.00 4.94
2639 3033 0.960861 ACTGATCAGCTCGTCGTGGA 60.961 55.000 22.83 0.00 0.00 4.02
2640 3034 0.248417 CTGATCAGCTCGTCGTGGAG 60.248 60.000 10.38 1.86 37.11 3.86
2641 3035 0.676782 TGATCAGCTCGTCGTGGAGA 60.677 55.000 9.18 0.00 36.08 3.71
2642 3036 0.452184 GATCAGCTCGTCGTGGAGAA 59.548 55.000 9.18 0.00 36.08 2.87
2643 3037 0.888619 ATCAGCTCGTCGTGGAGAAA 59.111 50.000 9.18 0.00 36.08 2.52
2644 3038 0.039437 TCAGCTCGTCGTGGAGAAAC 60.039 55.000 9.18 0.00 36.08 2.78
2645 3039 0.039074 CAGCTCGTCGTGGAGAAACT 60.039 55.000 9.18 0.00 36.08 2.66
2646 3040 0.039074 AGCTCGTCGTGGAGAAACTG 60.039 55.000 9.18 0.00 36.08 3.16
2647 3041 0.318784 GCTCGTCGTGGAGAAACTGT 60.319 55.000 9.18 0.00 36.08 3.55
2648 3042 1.409412 CTCGTCGTGGAGAAACTGTG 58.591 55.000 0.00 0.00 36.08 3.66
2649 3043 0.596600 TCGTCGTGGAGAAACTGTGC 60.597 55.000 0.00 0.00 0.00 4.57
2650 3044 0.597637 CGTCGTGGAGAAACTGTGCT 60.598 55.000 0.00 0.00 0.00 4.40
2651 3045 1.335597 CGTCGTGGAGAAACTGTGCTA 60.336 52.381 0.00 0.00 0.00 3.49
2652 3046 2.671351 CGTCGTGGAGAAACTGTGCTAT 60.671 50.000 0.00 0.00 0.00 2.97
2653 3047 3.427098 CGTCGTGGAGAAACTGTGCTATA 60.427 47.826 0.00 0.00 0.00 1.31
2654 3048 4.106197 GTCGTGGAGAAACTGTGCTATAG 58.894 47.826 0.00 0.00 0.00 1.31
2655 3049 3.130516 TCGTGGAGAAACTGTGCTATAGG 59.869 47.826 1.04 0.00 0.00 2.57
2656 3050 3.119101 CGTGGAGAAACTGTGCTATAGGT 60.119 47.826 1.04 0.00 0.00 3.08
2657 3051 4.184629 GTGGAGAAACTGTGCTATAGGTG 58.815 47.826 1.04 0.00 0.00 4.00
2658 3052 3.198872 GGAGAAACTGTGCTATAGGTGC 58.801 50.000 1.04 0.00 0.00 5.01
2659 3053 3.369471 GGAGAAACTGTGCTATAGGTGCA 60.369 47.826 1.04 0.00 38.19 4.57
2666 3060 2.465860 TGCTATAGGTGCACACGTTT 57.534 45.000 20.43 0.67 35.31 3.60
2667 3061 2.773487 TGCTATAGGTGCACACGTTTT 58.227 42.857 20.43 0.00 35.31 2.43
2668 3062 3.142951 TGCTATAGGTGCACACGTTTTT 58.857 40.909 20.43 0.00 35.31 1.94
2695 3089 4.481930 TTTTGAGAAATAGGTGCACACG 57.518 40.909 20.43 0.00 0.00 4.49
2696 3090 2.831685 TGAGAAATAGGTGCACACGT 57.168 45.000 20.43 4.93 0.00 4.49
2697 3091 3.945981 TGAGAAATAGGTGCACACGTA 57.054 42.857 20.43 7.22 36.31 3.57
2698 3092 3.581755 TGAGAAATAGGTGCACACGTAC 58.418 45.455 20.43 0.00 34.94 3.67
2699 3093 3.006003 TGAGAAATAGGTGCACACGTACA 59.994 43.478 20.43 5.24 34.94 2.90
2700 3094 3.585862 AGAAATAGGTGCACACGTACAG 58.414 45.455 20.43 0.00 34.94 2.74
2701 3095 1.722011 AATAGGTGCACACGTACAGC 58.278 50.000 20.43 6.51 34.94 4.40
2702 3096 0.108329 ATAGGTGCACACGTACAGCC 60.108 55.000 20.43 0.00 34.94 4.85
2703 3097 1.465200 TAGGTGCACACGTACAGCCA 61.465 55.000 20.43 0.00 34.88 4.75
2704 3098 2.604174 GGTGCACACGTACAGCCAC 61.604 63.158 20.43 0.00 0.00 5.01
2705 3099 2.280524 TGCACACGTACAGCCACC 60.281 61.111 0.00 0.00 0.00 4.61
2706 3100 3.047877 GCACACGTACAGCCACCC 61.048 66.667 0.00 0.00 0.00 4.61
2707 3101 2.736995 CACACGTACAGCCACCCG 60.737 66.667 0.00 0.00 0.00 5.28
2708 3102 3.228759 ACACGTACAGCCACCCGT 61.229 61.111 0.00 0.00 0.00 5.28
2709 3103 2.431942 CACGTACAGCCACCCGTC 60.432 66.667 0.00 0.00 0.00 4.79
2710 3104 4.047059 ACGTACAGCCACCCGTCG 62.047 66.667 0.00 0.00 0.00 5.12
2711 3105 4.047059 CGTACAGCCACCCGTCGT 62.047 66.667 0.00 0.00 0.00 4.34
2712 3106 2.431942 GTACAGCCACCCGTCGTG 60.432 66.667 0.00 0.00 42.62 4.35
2719 3113 3.946907 CACCCGTCGTGGAGAAAC 58.053 61.111 6.74 0.00 42.00 2.78
2720 3114 1.366366 CACCCGTCGTGGAGAAACT 59.634 57.895 6.74 0.00 42.00 2.66
2721 3115 0.944311 CACCCGTCGTGGAGAAACTG 60.944 60.000 6.74 0.00 42.00 3.16
2722 3116 1.366366 CCCGTCGTGGAGAAACTGT 59.634 57.895 0.00 0.00 42.00 3.55
2723 3117 0.666577 CCCGTCGTGGAGAAACTGTC 60.667 60.000 0.00 0.00 42.00 3.51
2724 3118 0.031585 CCGTCGTGGAGAAACTGTCA 59.968 55.000 0.00 0.00 42.00 3.58
2725 3119 1.537348 CCGTCGTGGAGAAACTGTCAA 60.537 52.381 0.00 0.00 42.00 3.18
2726 3120 2.404215 CGTCGTGGAGAAACTGTCAAT 58.596 47.619 0.00 0.00 0.00 2.57
2727 3121 3.571571 CGTCGTGGAGAAACTGTCAATA 58.428 45.455 0.00 0.00 0.00 1.90
2728 3122 3.364023 CGTCGTGGAGAAACTGTCAATAC 59.636 47.826 0.00 0.00 0.00 1.89
2729 3123 4.557205 GTCGTGGAGAAACTGTCAATACT 58.443 43.478 0.00 0.00 0.00 2.12
2730 3124 4.989168 GTCGTGGAGAAACTGTCAATACTT 59.011 41.667 0.00 0.00 0.00 2.24
2731 3125 4.988540 TCGTGGAGAAACTGTCAATACTTG 59.011 41.667 0.00 0.00 0.00 3.16
2732 3126 4.377431 CGTGGAGAAACTGTCAATACTTGC 60.377 45.833 0.00 0.00 0.00 4.01
2733 3127 4.515191 GTGGAGAAACTGTCAATACTTGCA 59.485 41.667 0.00 0.00 0.00 4.08
2734 3128 4.515191 TGGAGAAACTGTCAATACTTGCAC 59.485 41.667 0.00 0.00 0.00 4.57
2735 3129 4.515191 GGAGAAACTGTCAATACTTGCACA 59.485 41.667 0.00 0.00 0.00 4.57
2736 3130 5.424121 AGAAACTGTCAATACTTGCACAC 57.576 39.130 0.00 0.00 0.00 3.82
2737 3131 3.878086 AACTGTCAATACTTGCACACG 57.122 42.857 0.00 0.00 0.00 4.49
2738 3132 2.833794 ACTGTCAATACTTGCACACGT 58.166 42.857 0.00 0.00 0.00 4.49
2739 3133 3.985008 ACTGTCAATACTTGCACACGTA 58.015 40.909 0.00 0.00 0.00 3.57
2740 3134 3.739300 ACTGTCAATACTTGCACACGTAC 59.261 43.478 0.00 0.00 0.00 3.67
2741 3135 3.718815 TGTCAATACTTGCACACGTACA 58.281 40.909 0.00 0.00 0.00 2.90
2742 3136 3.738791 TGTCAATACTTGCACACGTACAG 59.261 43.478 0.00 0.00 0.00 2.74
2743 3137 2.734606 TCAATACTTGCACACGTACAGC 59.265 45.455 0.00 0.00 0.00 4.40
2745 3139 1.279527 TACTTGCACACGTACAGCGC 61.280 55.000 0.00 0.00 46.11 5.92
2746 3140 2.279851 TTGCACACGTACAGCGCT 60.280 55.556 2.64 2.64 46.11 5.92
2747 3141 2.484631 CTTGCACACGTACAGCGCTG 62.485 60.000 34.89 34.89 46.11 5.18
2748 3142 3.777925 GCACACGTACAGCGCTGG 61.778 66.667 38.27 24.24 46.11 4.85
2749 3143 2.049526 CACACGTACAGCGCTGGA 60.050 61.111 38.27 31.12 46.11 3.86
2750 3144 1.446099 CACACGTACAGCGCTGGAT 60.446 57.895 38.27 22.80 46.11 3.41
2751 3145 1.153823 ACACGTACAGCGCTGGATC 60.154 57.895 38.27 25.59 46.11 3.36
2752 3146 2.102357 ACGTACAGCGCTGGATCG 59.898 61.111 38.27 34.74 46.11 3.69
2753 3147 2.404186 ACGTACAGCGCTGGATCGA 61.404 57.895 36.88 20.42 46.11 3.59
2754 3148 1.939785 CGTACAGCGCTGGATCGAC 60.940 63.158 38.27 24.90 34.19 4.20
2755 3149 1.589196 GTACAGCGCTGGATCGACC 60.589 63.158 38.27 16.75 39.54 4.79
2756 3150 1.753078 TACAGCGCTGGATCGACCT 60.753 57.895 38.27 19.10 39.86 3.85
2757 3151 2.004808 TACAGCGCTGGATCGACCTG 62.005 60.000 38.27 13.24 39.86 4.00
2762 3156 3.313874 CTGGATCGACCTGCCCTT 58.686 61.111 0.00 0.00 39.86 3.95
2763 3157 1.604378 CTGGATCGACCTGCCCTTT 59.396 57.895 0.00 0.00 39.86 3.11
2764 3158 0.745845 CTGGATCGACCTGCCCTTTG 60.746 60.000 0.00 0.00 39.86 2.77
2765 3159 1.299976 GGATCGACCTGCCCTTTGT 59.700 57.895 0.00 0.00 35.41 2.83
2766 3160 0.322546 GGATCGACCTGCCCTTTGTT 60.323 55.000 0.00 0.00 35.41 2.83
2767 3161 0.804989 GATCGACCTGCCCTTTGTTG 59.195 55.000 0.00 0.00 0.00 3.33
2768 3162 1.244019 ATCGACCTGCCCTTTGTTGC 61.244 55.000 0.00 0.00 0.00 4.17
2769 3163 2.919494 CGACCTGCCCTTTGTTGCC 61.919 63.158 0.00 0.00 0.00 4.52
2770 3164 1.832167 GACCTGCCCTTTGTTGCCA 60.832 57.895 0.00 0.00 0.00 4.92
2771 3165 1.809567 GACCTGCCCTTTGTTGCCAG 61.810 60.000 0.00 0.00 0.00 4.85
2772 3166 2.576832 CCTGCCCTTTGTTGCCAGG 61.577 63.158 0.00 0.00 0.00 4.45
2784 3178 3.294493 GCCAGGGCAGCGAAACAA 61.294 61.111 5.20 0.00 41.49 2.83
2785 3179 2.639327 GCCAGGGCAGCGAAACAAT 61.639 57.895 5.20 0.00 41.49 2.71
2786 3180 1.508088 CCAGGGCAGCGAAACAATC 59.492 57.895 0.00 0.00 0.00 2.67
2797 3191 2.880456 CGAAACAATCGCTTCGATAGC 58.120 47.619 1.95 8.87 46.30 2.97
2805 3199 3.444657 GCTTCGATAGCGCCATTTG 57.555 52.632 2.29 0.00 40.71 2.32
2806 3200 0.658536 GCTTCGATAGCGCCATTTGC 60.659 55.000 2.29 0.00 40.71 3.68
2807 3201 0.040958 CTTCGATAGCGCCATTTGCC 60.041 55.000 2.29 0.00 37.46 4.52
2808 3202 0.463654 TTCGATAGCGCCATTTGCCT 60.464 50.000 2.29 0.00 37.46 4.75
2809 3203 0.463654 TCGATAGCGCCATTTGCCTT 60.464 50.000 2.29 0.00 37.46 4.35
2810 3204 1.202592 TCGATAGCGCCATTTGCCTTA 60.203 47.619 2.29 0.00 37.46 2.69
2811 3205 1.806542 CGATAGCGCCATTTGCCTTAT 59.193 47.619 2.29 0.00 36.24 1.73
2812 3206 2.226437 CGATAGCGCCATTTGCCTTATT 59.774 45.455 2.29 0.00 36.24 1.40
2813 3207 3.304659 CGATAGCGCCATTTGCCTTATTT 60.305 43.478 2.29 0.00 36.24 1.40
2814 3208 4.620982 GATAGCGCCATTTGCCTTATTTT 58.379 39.130 2.29 0.00 36.24 1.82
2815 3209 3.333029 AGCGCCATTTGCCTTATTTTT 57.667 38.095 2.29 0.00 36.24 1.94
2816 3210 3.261580 AGCGCCATTTGCCTTATTTTTC 58.738 40.909 2.29 0.00 36.24 2.29
2817 3211 2.999355 GCGCCATTTGCCTTATTTTTCA 59.001 40.909 0.00 0.00 36.24 2.69
2818 3212 3.434984 GCGCCATTTGCCTTATTTTTCAA 59.565 39.130 0.00 0.00 36.24 2.69
2819 3213 4.083590 GCGCCATTTGCCTTATTTTTCAAA 60.084 37.500 0.00 0.00 36.24 2.69
2820 3214 5.381477 CGCCATTTGCCTTATTTTTCAAAC 58.619 37.500 0.00 0.00 36.24 2.93
2821 3215 5.179182 CGCCATTTGCCTTATTTTTCAAACT 59.821 36.000 0.00 0.00 36.24 2.66
2822 3216 6.372981 GCCATTTGCCTTATTTTTCAAACTG 58.627 36.000 0.00 0.00 32.17 3.16
2823 3217 6.568271 GCCATTTGCCTTATTTTTCAAACTGG 60.568 38.462 0.00 0.00 34.30 4.00
2824 3218 6.372981 CATTTGCCTTATTTTTCAAACTGGC 58.627 36.000 0.00 0.00 39.53 4.85
2825 3219 4.001618 TGCCTTATTTTTCAAACTGGCC 57.998 40.909 0.00 0.00 38.45 5.36
2826 3220 3.244387 TGCCTTATTTTTCAAACTGGCCC 60.244 43.478 0.00 0.00 38.45 5.80
2827 3221 3.244387 GCCTTATTTTTCAAACTGGCCCA 60.244 43.478 0.00 0.00 33.66 5.36
2828 3222 4.568956 CCTTATTTTTCAAACTGGCCCAG 58.431 43.478 9.83 9.83 37.52 4.45
2829 3223 2.549064 ATTTTTCAAACTGGCCCAGC 57.451 45.000 11.63 0.00 34.37 4.85
2830 3224 1.198713 TTTTTCAAACTGGCCCAGCA 58.801 45.000 11.63 0.00 34.37 4.41
2831 3225 0.463620 TTTTCAAACTGGCCCAGCAC 59.536 50.000 11.63 0.00 34.37 4.40
2832 3226 1.733402 TTTCAAACTGGCCCAGCACG 61.733 55.000 11.63 0.00 34.37 5.34
2833 3227 2.594303 CAAACTGGCCCAGCACGA 60.594 61.111 11.63 0.00 34.37 4.35
2834 3228 2.192861 CAAACTGGCCCAGCACGAA 61.193 57.895 11.63 0.00 34.37 3.85
2835 3229 1.454847 AAACTGGCCCAGCACGAAA 60.455 52.632 11.63 0.00 34.37 3.46
2836 3230 0.827507 AAACTGGCCCAGCACGAAAT 60.828 50.000 11.63 0.00 34.37 2.17
2837 3231 0.037590 AACTGGCCCAGCACGAAATA 59.962 50.000 11.63 0.00 34.37 1.40
2838 3232 0.676782 ACTGGCCCAGCACGAAATAC 60.677 55.000 11.63 0.00 34.37 1.89
2852 3246 4.616181 CGAAATACGGCTCTTTTTCCAT 57.384 40.909 0.00 0.00 38.46 3.41
2853 3247 4.588278 CGAAATACGGCTCTTTTTCCATC 58.412 43.478 0.00 0.00 38.46 3.51
2854 3248 4.495844 CGAAATACGGCTCTTTTTCCATCC 60.496 45.833 0.00 0.00 38.46 3.51
2855 3249 2.413310 TACGGCTCTTTTTCCATCCC 57.587 50.000 0.00 0.00 0.00 3.85
2856 3250 0.404040 ACGGCTCTTTTTCCATCCCA 59.596 50.000 0.00 0.00 0.00 4.37
2857 3251 1.005924 ACGGCTCTTTTTCCATCCCAT 59.994 47.619 0.00 0.00 0.00 4.00
2858 3252 2.102578 CGGCTCTTTTTCCATCCCATT 58.897 47.619 0.00 0.00 0.00 3.16
2859 3253 2.099756 CGGCTCTTTTTCCATCCCATTC 59.900 50.000 0.00 0.00 0.00 2.67
2860 3254 2.432146 GGCTCTTTTTCCATCCCATTCC 59.568 50.000 0.00 0.00 0.00 3.01
2861 3255 2.432146 GCTCTTTTTCCATCCCATTCCC 59.568 50.000 0.00 0.00 0.00 3.97
2862 3256 2.689983 CTCTTTTTCCATCCCATTCCCG 59.310 50.000 0.00 0.00 0.00 5.14
2863 3257 2.310349 TCTTTTTCCATCCCATTCCCGA 59.690 45.455 0.00 0.00 0.00 5.14
2864 3258 2.137810 TTTTCCATCCCATTCCCGAC 57.862 50.000 0.00 0.00 0.00 4.79
2865 3259 0.995803 TTTCCATCCCATTCCCGACA 59.004 50.000 0.00 0.00 0.00 4.35
2866 3260 1.221635 TTCCATCCCATTCCCGACAT 58.778 50.000 0.00 0.00 0.00 3.06
2867 3261 0.473755 TCCATCCCATTCCCGACATG 59.526 55.000 0.00 0.00 0.00 3.21
2868 3262 0.473755 CCATCCCATTCCCGACATGA 59.526 55.000 0.00 0.00 0.00 3.07
2869 3263 1.597742 CATCCCATTCCCGACATGAC 58.402 55.000 0.00 0.00 0.00 3.06
2870 3264 1.141657 CATCCCATTCCCGACATGACT 59.858 52.381 0.00 0.00 0.00 3.41
2871 3265 0.830648 TCCCATTCCCGACATGACTC 59.169 55.000 0.00 0.00 0.00 3.36
2872 3266 0.833287 CCCATTCCCGACATGACTCT 59.167 55.000 0.00 0.00 0.00 3.24
2873 3267 1.473965 CCCATTCCCGACATGACTCTG 60.474 57.143 0.00 0.00 0.00 3.35
2874 3268 1.482182 CCATTCCCGACATGACTCTGA 59.518 52.381 0.00 0.00 0.00 3.27
2875 3269 2.093500 CCATTCCCGACATGACTCTGAA 60.093 50.000 0.00 0.00 0.00 3.02
2876 3270 2.743636 TTCCCGACATGACTCTGAAC 57.256 50.000 0.00 0.00 0.00 3.18
2877 3271 1.924731 TCCCGACATGACTCTGAACT 58.075 50.000 0.00 0.00 0.00 3.01
2878 3272 1.546029 TCCCGACATGACTCTGAACTG 59.454 52.381 0.00 0.00 0.00 3.16
2879 3273 1.404717 CCCGACATGACTCTGAACTGG 60.405 57.143 0.00 0.00 0.00 4.00
2880 3274 1.546029 CCGACATGACTCTGAACTGGA 59.454 52.381 0.00 0.00 0.00 3.86
2881 3275 2.600731 CGACATGACTCTGAACTGGAC 58.399 52.381 0.00 0.00 0.00 4.02
2882 3276 2.600731 GACATGACTCTGAACTGGACG 58.399 52.381 0.00 0.00 0.00 4.79
2883 3277 1.337260 ACATGACTCTGAACTGGACGC 60.337 52.381 0.00 0.00 0.00 5.19
2884 3278 1.067283 CATGACTCTGAACTGGACGCT 60.067 52.381 0.00 0.00 0.00 5.07
2885 3279 0.315251 TGACTCTGAACTGGACGCTG 59.685 55.000 0.00 0.00 0.00 5.18
2886 3280 0.598562 GACTCTGAACTGGACGCTGA 59.401 55.000 0.00 0.00 0.00 4.26
2887 3281 1.203523 GACTCTGAACTGGACGCTGAT 59.796 52.381 0.00 0.00 0.00 2.90
2888 3282 1.067283 ACTCTGAACTGGACGCTGATG 60.067 52.381 0.00 0.00 0.00 3.07
2889 3283 0.247460 TCTGAACTGGACGCTGATGG 59.753 55.000 0.00 0.00 0.00 3.51
2890 3284 0.247460 CTGAACTGGACGCTGATGGA 59.753 55.000 0.00 0.00 0.00 3.41
2891 3285 0.684535 TGAACTGGACGCTGATGGAA 59.315 50.000 0.00 0.00 0.00 3.53
2892 3286 1.079503 GAACTGGACGCTGATGGAAC 58.920 55.000 0.00 0.00 0.00 3.62
2893 3287 0.670546 AACTGGACGCTGATGGAACG 60.671 55.000 0.00 0.00 0.00 3.95
2894 3288 1.811266 CTGGACGCTGATGGAACGG 60.811 63.158 0.00 0.00 0.00 4.44
2895 3289 2.511600 GGACGCTGATGGAACGGG 60.512 66.667 0.00 0.00 0.00 5.28
2896 3290 2.577059 GACGCTGATGGAACGGGA 59.423 61.111 0.00 0.00 0.00 5.14
2897 3291 1.519455 GACGCTGATGGAACGGGAG 60.519 63.158 0.00 0.00 0.00 4.30
2898 3292 2.892425 CGCTGATGGAACGGGAGC 60.892 66.667 0.00 0.00 0.00 4.70
2899 3293 2.586792 GCTGATGGAACGGGAGCT 59.413 61.111 0.00 0.00 0.00 4.09
2900 3294 1.522580 GCTGATGGAACGGGAGCTC 60.523 63.158 4.71 4.71 0.00 4.09
2901 3295 1.227089 CTGATGGAACGGGAGCTCG 60.227 63.158 7.83 0.00 0.00 5.03
2902 3296 2.586357 GATGGAACGGGAGCTCGC 60.586 66.667 20.29 20.29 0.00 5.03
2911 3305 4.273257 GGAGCTCGCGAGGCCTAC 62.273 72.222 35.10 22.29 0.00 3.18
2912 3306 4.273257 GAGCTCGCGAGGCCTACC 62.273 72.222 35.10 18.51 0.00 3.18
2914 3308 4.874977 GCTCGCGAGGCCTACCAC 62.875 72.222 35.10 13.87 39.06 4.16
2915 3309 4.208686 CTCGCGAGGCCTACCACC 62.209 72.222 28.40 0.00 39.06 4.61
2917 3311 4.814294 CGCGAGGCCTACCACCAC 62.814 72.222 4.42 0.00 39.06 4.16
2918 3312 4.468689 GCGAGGCCTACCACCACC 62.469 72.222 4.42 0.00 39.06 4.61
2919 3313 3.782443 CGAGGCCTACCACCACCC 61.782 72.222 4.42 0.00 39.06 4.61
2920 3314 2.609610 GAGGCCTACCACCACCCA 60.610 66.667 4.42 0.00 39.06 4.51
2921 3315 2.933834 AGGCCTACCACCACCCAC 60.934 66.667 1.29 0.00 39.06 4.61
2922 3316 4.404098 GGCCTACCACCACCCACG 62.404 72.222 0.00 0.00 35.26 4.94
2923 3317 4.404098 GCCTACCACCACCCACGG 62.404 72.222 0.00 0.00 0.00 4.94
2924 3318 4.404098 CCTACCACCACCCACGGC 62.404 72.222 0.00 0.00 0.00 5.68
2925 3319 4.404098 CTACCACCACCCACGGCC 62.404 72.222 0.00 0.00 0.00 6.13
2944 3338 4.209866 GCGGGGAATGGGGAGCAT 62.210 66.667 0.00 0.00 0.00 3.79
2945 3339 2.203394 CGGGGAATGGGGAGCATG 60.203 66.667 0.00 0.00 0.00 4.06
2946 3340 3.018901 GGGGAATGGGGAGCATGT 58.981 61.111 0.00 0.00 0.00 3.21
2947 3341 1.705002 CGGGGAATGGGGAGCATGTA 61.705 60.000 0.00 0.00 0.00 2.29
2948 3342 0.178990 GGGGAATGGGGAGCATGTAC 60.179 60.000 0.00 0.00 0.00 2.90
2949 3343 0.535102 GGGAATGGGGAGCATGTACG 60.535 60.000 0.00 0.00 0.00 3.67
2950 3344 0.535102 GGAATGGGGAGCATGTACGG 60.535 60.000 0.00 0.00 0.00 4.02
2951 3345 1.152963 AATGGGGAGCATGTACGGC 60.153 57.895 1.34 1.34 0.00 5.68
2952 3346 2.624674 AATGGGGAGCATGTACGGCC 62.625 60.000 5.78 0.00 0.00 6.13
2953 3347 4.564110 GGGGAGCATGTACGGCCC 62.564 72.222 0.00 6.92 38.08 5.80
2954 3348 4.910585 GGGAGCATGTACGGCCCG 62.911 72.222 0.00 0.00 0.00 6.13
2955 3349 3.845259 GGAGCATGTACGGCCCGA 61.845 66.667 11.71 0.00 0.00 5.14
2956 3350 2.421739 GAGCATGTACGGCCCGAT 59.578 61.111 11.71 0.00 0.00 4.18
2957 3351 1.664965 GAGCATGTACGGCCCGATC 60.665 63.158 11.71 2.33 0.00 3.69
2958 3352 3.036084 GCATGTACGGCCCGATCG 61.036 66.667 11.71 8.51 0.00 3.69
2959 3353 3.036084 CATGTACGGCCCGATCGC 61.036 66.667 11.71 0.00 0.00 4.58
2960 3354 4.295119 ATGTACGGCCCGATCGCC 62.295 66.667 11.71 5.48 46.13 5.54
2971 3365 3.115892 GATCGCCGTCGCACCAAA 61.116 61.111 0.00 0.00 35.26 3.28
2972 3366 2.666862 ATCGCCGTCGCACCAAAA 60.667 55.556 0.00 0.00 35.26 2.44
2973 3367 2.177654 GATCGCCGTCGCACCAAAAA 62.178 55.000 0.00 0.00 35.26 1.94
2989 3383 3.361977 AAAAATGCGCGGCCGACT 61.362 55.556 33.48 6.32 36.29 4.18
2990 3384 3.609214 AAAAATGCGCGGCCGACTG 62.609 57.895 33.48 19.04 36.29 3.51
3008 3402 3.500642 CGCGTCGCTCTCTCTGGA 61.501 66.667 16.36 0.00 0.00 3.86
3009 3403 2.878429 GCGTCGCTCTCTCTGGAA 59.122 61.111 10.68 0.00 0.00 3.53
3010 3404 1.213013 GCGTCGCTCTCTCTGGAAA 59.787 57.895 10.68 0.00 0.00 3.13
3011 3405 0.800300 GCGTCGCTCTCTCTGGAAAG 60.800 60.000 10.68 0.00 0.00 2.62
3012 3406 0.523966 CGTCGCTCTCTCTGGAAAGT 59.476 55.000 0.00 0.00 0.00 2.66
3013 3407 1.738350 CGTCGCTCTCTCTGGAAAGTA 59.262 52.381 0.00 0.00 0.00 2.24
3014 3408 2.223157 CGTCGCTCTCTCTGGAAAGTAG 60.223 54.545 0.00 0.00 0.00 2.57
3015 3409 2.098443 GTCGCTCTCTCTGGAAAGTAGG 59.902 54.545 0.00 0.00 0.00 3.18
3016 3410 2.096248 CGCTCTCTCTGGAAAGTAGGT 58.904 52.381 0.00 0.00 0.00 3.08
3017 3411 2.098443 CGCTCTCTCTGGAAAGTAGGTC 59.902 54.545 0.00 0.00 0.00 3.85
3018 3412 2.429250 GCTCTCTCTGGAAAGTAGGTCC 59.571 54.545 0.00 0.00 35.55 4.46
3019 3413 3.702792 CTCTCTCTGGAAAGTAGGTCCA 58.297 50.000 0.00 0.00 43.03 4.02
3024 3418 2.426431 TGGAAAGTAGGTCCAGGGAA 57.574 50.000 0.00 0.00 40.33 3.97
3025 3419 2.266279 TGGAAAGTAGGTCCAGGGAAG 58.734 52.381 0.00 0.00 40.33 3.46
3026 3420 1.065345 GGAAAGTAGGTCCAGGGAAGC 60.065 57.143 0.00 0.00 35.05 3.86
3027 3421 1.628846 GAAAGTAGGTCCAGGGAAGCA 59.371 52.381 0.00 0.00 0.00 3.91
3028 3422 1.742308 AAGTAGGTCCAGGGAAGCAA 58.258 50.000 0.00 0.00 0.00 3.91
3029 3423 1.280457 AGTAGGTCCAGGGAAGCAAG 58.720 55.000 0.00 0.00 0.00 4.01
3030 3424 0.393132 GTAGGTCCAGGGAAGCAAGC 60.393 60.000 0.00 0.00 0.00 4.01
3031 3425 0.840288 TAGGTCCAGGGAAGCAAGCA 60.840 55.000 0.00 0.00 0.00 3.91
3032 3426 1.676967 GGTCCAGGGAAGCAAGCAG 60.677 63.158 0.00 0.00 0.00 4.24
3033 3427 2.034687 TCCAGGGAAGCAAGCAGC 59.965 61.111 0.00 0.00 46.19 5.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 2.192608 CTTTGCAACTCTGGCGAGGC 62.193 60.000 0.00 6.14 41.71 4.70
14 15 1.580845 CCTTTGCAACTCTGGCGAGG 61.581 60.000 0.00 0.00 41.71 4.63
15 16 1.580845 CCCTTTGCAACTCTGGCGAG 61.581 60.000 0.00 5.08 43.10 5.03
16 17 1.600636 CCCTTTGCAACTCTGGCGA 60.601 57.895 0.00 0.00 0.00 5.54
17 18 1.172180 TTCCCTTTGCAACTCTGGCG 61.172 55.000 0.00 0.00 0.00 5.69
18 19 1.039856 TTTCCCTTTGCAACTCTGGC 58.960 50.000 0.00 0.00 0.00 4.85
19 20 2.546584 GCTTTTCCCTTTGCAACTCTGG 60.547 50.000 0.00 0.00 0.00 3.86
20 21 2.546584 GGCTTTTCCCTTTGCAACTCTG 60.547 50.000 0.00 0.00 0.00 3.35
21 22 1.688735 GGCTTTTCCCTTTGCAACTCT 59.311 47.619 0.00 0.00 0.00 3.24
22 23 2.154854 GGCTTTTCCCTTTGCAACTC 57.845 50.000 0.00 0.00 0.00 3.01
33 34 2.710902 GGATGCGTGGGGCTTTTCC 61.711 63.158 0.00 0.00 44.05 3.13
34 35 1.322538 ATGGATGCGTGGGGCTTTTC 61.323 55.000 0.00 0.00 44.05 2.29
35 36 1.305213 ATGGATGCGTGGGGCTTTT 60.305 52.632 0.00 0.00 44.05 2.27
36 37 1.754234 GATGGATGCGTGGGGCTTT 60.754 57.895 0.00 0.00 44.05 3.51
37 38 2.124151 GATGGATGCGTGGGGCTT 60.124 61.111 0.00 0.00 44.05 4.35
38 39 4.195334 GGATGGATGCGTGGGGCT 62.195 66.667 0.00 0.00 44.05 5.19
39 40 3.797507 ATGGATGGATGCGTGGGGC 62.798 63.158 0.00 0.00 43.96 5.80
40 41 1.601759 GATGGATGGATGCGTGGGG 60.602 63.158 0.00 0.00 0.00 4.96
41 42 0.251033 ATGATGGATGGATGCGTGGG 60.251 55.000 0.00 0.00 0.00 4.61
42 43 1.612676 AATGATGGATGGATGCGTGG 58.387 50.000 0.00 0.00 0.00 4.94
43 44 2.485426 GGTAATGATGGATGGATGCGTG 59.515 50.000 0.00 0.00 0.00 5.34
44 45 2.553028 GGGTAATGATGGATGGATGCGT 60.553 50.000 0.00 0.00 0.00 5.24
45 46 2.086869 GGGTAATGATGGATGGATGCG 58.913 52.381 0.00 0.00 0.00 4.73
46 47 3.446442 AGGGTAATGATGGATGGATGC 57.554 47.619 0.00 0.00 0.00 3.91
47 48 4.005650 CGAAGGGTAATGATGGATGGATG 58.994 47.826 0.00 0.00 0.00 3.51
48 49 3.909995 TCGAAGGGTAATGATGGATGGAT 59.090 43.478 0.00 0.00 0.00 3.41
49 50 3.071023 GTCGAAGGGTAATGATGGATGGA 59.929 47.826 0.00 0.00 0.00 3.41
50 51 3.403038 GTCGAAGGGTAATGATGGATGG 58.597 50.000 0.00 0.00 0.00 3.51
51 52 3.181455 TGGTCGAAGGGTAATGATGGATG 60.181 47.826 0.00 0.00 0.00 3.51
52 53 3.045634 TGGTCGAAGGGTAATGATGGAT 58.954 45.455 0.00 0.00 0.00 3.41
53 54 2.169769 GTGGTCGAAGGGTAATGATGGA 59.830 50.000 0.00 0.00 0.00 3.41
54 55 2.093181 TGTGGTCGAAGGGTAATGATGG 60.093 50.000 0.00 0.00 0.00 3.51
55 56 3.260475 TGTGGTCGAAGGGTAATGATG 57.740 47.619 0.00 0.00 0.00 3.07
56 57 3.873910 CTTGTGGTCGAAGGGTAATGAT 58.126 45.455 0.00 0.00 0.00 2.45
57 58 2.614481 GCTTGTGGTCGAAGGGTAATGA 60.614 50.000 0.00 0.00 0.00 2.57
58 59 1.737793 GCTTGTGGTCGAAGGGTAATG 59.262 52.381 0.00 0.00 0.00 1.90
59 60 1.339727 GGCTTGTGGTCGAAGGGTAAT 60.340 52.381 0.00 0.00 0.00 1.89
60 61 0.035739 GGCTTGTGGTCGAAGGGTAA 59.964 55.000 0.00 0.00 0.00 2.85
61 62 0.834687 AGGCTTGTGGTCGAAGGGTA 60.835 55.000 0.00 0.00 0.00 3.69
62 63 2.147387 AGGCTTGTGGTCGAAGGGT 61.147 57.895 0.00 0.00 0.00 4.34
63 64 1.672356 CAGGCTTGTGGTCGAAGGG 60.672 63.158 0.00 0.00 0.00 3.95
64 65 2.328099 GCAGGCTTGTGGTCGAAGG 61.328 63.158 0.00 0.00 0.00 3.46
65 66 2.671177 CGCAGGCTTGTGGTCGAAG 61.671 63.158 0.59 0.00 0.00 3.79
66 67 2.652382 TTCGCAGGCTTGTGGTCGAA 62.652 55.000 9.71 7.18 35.51 3.71
67 68 2.652382 TTTCGCAGGCTTGTGGTCGA 62.652 55.000 9.71 0.72 35.51 4.20
68 69 2.250939 TTTCGCAGGCTTGTGGTCG 61.251 57.895 9.71 0.00 35.51 4.79
69 70 1.282875 GTTTCGCAGGCTTGTGGTC 59.717 57.895 9.71 0.00 35.51 4.02
70 71 2.542907 CGTTTCGCAGGCTTGTGGT 61.543 57.895 9.71 0.00 35.51 4.16
71 72 2.252260 CGTTTCGCAGGCTTGTGG 59.748 61.111 9.71 0.00 35.51 4.17
72 73 2.252260 CCGTTTCGCAGGCTTGTG 59.748 61.111 2.41 2.41 36.13 3.33
73 74 2.978010 CCCGTTTCGCAGGCTTGT 60.978 61.111 0.00 0.00 0.00 3.16
74 75 2.978010 ACCCGTTTCGCAGGCTTG 60.978 61.111 0.00 0.00 0.00 4.01
75 76 2.748058 ATCACCCGTTTCGCAGGCTT 62.748 55.000 0.00 0.00 0.00 4.35
76 77 3.254024 ATCACCCGTTTCGCAGGCT 62.254 57.895 0.00 0.00 0.00 4.58
77 78 2.746277 ATCACCCGTTTCGCAGGC 60.746 61.111 0.00 0.00 0.00 4.85
78 79 0.673644 AAGATCACCCGTTTCGCAGG 60.674 55.000 0.00 0.00 0.00 4.85
79 80 0.721718 GAAGATCACCCGTTTCGCAG 59.278 55.000 0.00 0.00 0.00 5.18
80 81 0.320374 AGAAGATCACCCGTTTCGCA 59.680 50.000 0.00 0.00 0.00 5.10
81 82 1.000145 GAGAAGATCACCCGTTTCGC 59.000 55.000 0.00 0.00 0.00 4.70
82 83 2.363788 TGAGAAGATCACCCGTTTCG 57.636 50.000 0.00 0.00 31.12 3.46
91 92 4.058124 CAACCAAAGACGTGAGAAGATCA 58.942 43.478 0.00 0.00 34.79 2.92
92 93 3.120511 GCAACCAAAGACGTGAGAAGATC 60.121 47.826 0.00 0.00 0.00 2.75
93 94 2.808543 GCAACCAAAGACGTGAGAAGAT 59.191 45.455 0.00 0.00 0.00 2.40
94 95 2.210116 GCAACCAAAGACGTGAGAAGA 58.790 47.619 0.00 0.00 0.00 2.87
95 96 1.264288 GGCAACCAAAGACGTGAGAAG 59.736 52.381 0.00 0.00 0.00 2.85
96 97 1.134220 AGGCAACCAAAGACGTGAGAA 60.134 47.619 0.00 0.00 37.17 2.87
97 98 0.468226 AGGCAACCAAAGACGTGAGA 59.532 50.000 0.00 0.00 37.17 3.27
98 99 0.588252 CAGGCAACCAAAGACGTGAG 59.412 55.000 0.00 0.00 37.17 3.51
99 100 1.444119 GCAGGCAACCAAAGACGTGA 61.444 55.000 0.00 0.00 37.17 4.35
100 101 1.008538 GCAGGCAACCAAAGACGTG 60.009 57.895 0.00 0.00 37.17 4.49
101 102 0.823356 ATGCAGGCAACCAAAGACGT 60.823 50.000 0.00 0.00 37.17 4.34
105 106 0.245539 CCTCATGCAGGCAACCAAAG 59.754 55.000 0.00 0.00 34.56 2.77
230 232 1.829222 CTGGCCCAATTCAAGCATTCT 59.171 47.619 0.00 0.00 0.00 2.40
371 419 1.254026 CGGTGAGAGTAGGGACAACA 58.746 55.000 0.00 0.00 0.00 3.33
372 420 0.531200 CCGGTGAGAGTAGGGACAAC 59.469 60.000 0.00 0.00 0.00 3.32
373 421 1.255667 GCCGGTGAGAGTAGGGACAA 61.256 60.000 1.90 0.00 0.00 3.18
374 422 1.681327 GCCGGTGAGAGTAGGGACA 60.681 63.158 1.90 0.00 0.00 4.02
375 423 2.772691 CGCCGGTGAGAGTAGGGAC 61.773 68.421 10.20 0.00 0.00 4.46
376 424 2.439701 CGCCGGTGAGAGTAGGGA 60.440 66.667 10.20 0.00 0.00 4.20
377 425 3.528370 CCGCCGGTGAGAGTAGGG 61.528 72.222 18.79 0.00 0.00 3.53
378 426 4.208686 GCCGCCGGTGAGAGTAGG 62.209 72.222 18.79 0.00 0.00 3.18
379 427 4.554363 CGCCGCCGGTGAGAGTAG 62.554 72.222 18.79 0.00 34.74 2.57
520 587 3.324846 CCATGGATTGAATCTACCTCCGA 59.675 47.826 5.56 0.00 0.00 4.55
524 591 3.718434 TCTGCCATGGATTGAATCTACCT 59.282 43.478 18.40 0.00 0.00 3.08
549 618 2.605825 ACCTCTATTCCCCATTCCCA 57.394 50.000 0.00 0.00 0.00 4.37
590 689 6.507900 TCTTGCATGAACTAGTATGAGCTAC 58.492 40.000 9.41 0.00 0.00 3.58
591 690 6.715347 TCTTGCATGAACTAGTATGAGCTA 57.285 37.500 9.41 2.94 0.00 3.32
625 788 4.586421 CCTTCTACTCCATCTGCATCTACA 59.414 45.833 0.00 0.00 0.00 2.74
779 970 3.075186 TCGACCTCGACTCCTCCA 58.925 61.111 0.00 0.00 44.22 3.86
802 993 3.142838 GCCAGGCCGTCGTACCTA 61.143 66.667 0.00 0.00 33.38 3.08
1044 1243 4.773013 AGTTGAAGACGTTGGTTCCTAAA 58.227 39.130 0.00 0.00 0.00 1.85
1076 1275 2.513204 CAGTGCTCATGAGGGCCG 60.513 66.667 23.89 0.00 0.00 6.13
1179 1387 1.192146 CCTTCTTCCTCGGGTGGTCA 61.192 60.000 0.00 0.00 0.00 4.02
1314 1522 4.685302 GCCTAATTTACTCACCCTACCCAC 60.685 50.000 0.00 0.00 0.00 4.61
1315 1523 3.457012 GCCTAATTTACTCACCCTACCCA 59.543 47.826 0.00 0.00 0.00 4.51
1316 1524 3.493873 CGCCTAATTTACTCACCCTACCC 60.494 52.174 0.00 0.00 0.00 3.69
1317 1525 3.133542 ACGCCTAATTTACTCACCCTACC 59.866 47.826 0.00 0.00 0.00 3.18
1318 1526 4.117685 CACGCCTAATTTACTCACCCTAC 58.882 47.826 0.00 0.00 0.00 3.18
1319 1527 4.025360 TCACGCCTAATTTACTCACCCTA 58.975 43.478 0.00 0.00 0.00 3.53
1320 1528 2.835764 TCACGCCTAATTTACTCACCCT 59.164 45.455 0.00 0.00 0.00 4.34
1321 1529 3.255969 TCACGCCTAATTTACTCACCC 57.744 47.619 0.00 0.00 0.00 4.61
1322 1530 3.560068 CCATCACGCCTAATTTACTCACC 59.440 47.826 0.00 0.00 0.00 4.02
1323 1531 4.439057 TCCATCACGCCTAATTTACTCAC 58.561 43.478 0.00 0.00 0.00 3.51
1324 1532 4.404394 TCTCCATCACGCCTAATTTACTCA 59.596 41.667 0.00 0.00 0.00 3.41
1325 1533 4.945246 TCTCCATCACGCCTAATTTACTC 58.055 43.478 0.00 0.00 0.00 2.59
1326 1534 4.202264 CCTCTCCATCACGCCTAATTTACT 60.202 45.833 0.00 0.00 0.00 2.24
1327 1535 4.058817 CCTCTCCATCACGCCTAATTTAC 58.941 47.826 0.00 0.00 0.00 2.01
1328 1536 3.964688 TCCTCTCCATCACGCCTAATTTA 59.035 43.478 0.00 0.00 0.00 1.40
1329 1537 2.771943 TCCTCTCCATCACGCCTAATTT 59.228 45.455 0.00 0.00 0.00 1.82
1330 1538 2.366916 CTCCTCTCCATCACGCCTAATT 59.633 50.000 0.00 0.00 0.00 1.40
1331 1539 1.967066 CTCCTCTCCATCACGCCTAAT 59.033 52.381 0.00 0.00 0.00 1.73
1332 1540 1.403814 CTCCTCTCCATCACGCCTAA 58.596 55.000 0.00 0.00 0.00 2.69
1333 1541 0.468214 CCTCCTCTCCATCACGCCTA 60.468 60.000 0.00 0.00 0.00 3.93
1334 1542 1.760086 CCTCCTCTCCATCACGCCT 60.760 63.158 0.00 0.00 0.00 5.52
1335 1543 1.330655 TTCCTCCTCTCCATCACGCC 61.331 60.000 0.00 0.00 0.00 5.68
1336 1544 0.103937 CTTCCTCCTCTCCATCACGC 59.896 60.000 0.00 0.00 0.00 5.34
1337 1545 0.749649 CCTTCCTCCTCTCCATCACG 59.250 60.000 0.00 0.00 0.00 4.35
1338 1546 1.872773 ACCTTCCTCCTCTCCATCAC 58.127 55.000 0.00 0.00 0.00 3.06
1339 1547 2.191400 CAACCTTCCTCCTCTCCATCA 58.809 52.381 0.00 0.00 0.00 3.07
1474 1847 1.603678 GCACAGCACAAAGTTCATGGG 60.604 52.381 0.00 0.00 0.00 4.00
1792 2172 1.522806 ACCGCAACGAAGTGCTTGA 60.523 52.632 8.42 0.00 45.00 3.02
1832 2214 2.193536 GGAGCAGCCGGTGTTGTTT 61.194 57.895 1.90 0.00 0.00 2.83
1998 2380 0.677731 ACCACCTCAATGCCATCGTG 60.678 55.000 0.00 0.00 0.00 4.35
2028 2410 2.048127 GGCTTCGTCGTGCTTCCT 60.048 61.111 11.32 0.00 0.00 3.36
2183 2574 2.033065 GCAGAGCATAAACAGAGCATCG 60.033 50.000 0.00 0.00 42.67 3.84
2222 2613 2.083774 CACTTCGGCACAACCATGTAT 58.916 47.619 0.00 0.00 37.82 2.29
2352 2745 1.148273 GGGCAGAACCACACTGTCA 59.852 57.895 0.00 0.00 41.10 3.58
2354 2747 0.538057 CATGGGCAGAACCACACTGT 60.538 55.000 0.00 0.00 44.72 3.55
2391 2784 6.079763 CCATCTGTAAGTTGTTTGATTGACG 58.920 40.000 0.00 0.00 31.74 4.35
2393 2786 6.514870 GCACCATCTGTAAGTTGTTTGATTGA 60.515 38.462 0.00 0.00 31.74 2.57
2408 2801 2.756760 CAGCCTTAAATGCACCATCTGT 59.243 45.455 0.00 0.00 0.00 3.41
2514 2908 9.784680 GTCTCAAACGTAGTATTTTCTATGAGA 57.215 33.333 0.00 0.00 45.00 3.27
2515 2909 8.734933 CGTCTCAAACGTAGTATTTTCTATGAG 58.265 37.037 0.00 0.00 45.00 2.90
2516 2910 8.610855 CGTCTCAAACGTAGTATTTTCTATGA 57.389 34.615 0.00 0.00 45.00 2.15
2532 2926 3.362237 CACGAGAAGATCACGTCTCAAAC 59.638 47.826 16.66 0.00 46.54 2.93
2533 2927 3.004419 ACACGAGAAGATCACGTCTCAAA 59.996 43.478 16.66 0.00 46.54 2.69
2534 2928 2.552743 ACACGAGAAGATCACGTCTCAA 59.447 45.455 16.66 0.00 46.54 3.02
2535 2929 2.152016 ACACGAGAAGATCACGTCTCA 58.848 47.619 16.66 0.00 46.54 3.27
2536 2930 2.904011 ACACGAGAAGATCACGTCTC 57.096 50.000 9.80 9.80 41.46 3.36
2537 2931 3.644884 AAACACGAGAAGATCACGTCT 57.355 42.857 0.00 0.00 41.46 4.18
2538 2932 4.444720 AGAAAAACACGAGAAGATCACGTC 59.555 41.667 0.00 0.00 41.46 4.34
2539 2933 4.369182 AGAAAAACACGAGAAGATCACGT 58.631 39.130 0.00 0.00 44.01 4.49
2540 2934 4.431728 CGAGAAAAACACGAGAAGATCACG 60.432 45.833 0.00 0.00 36.55 4.35
2541 2935 4.444720 ACGAGAAAAACACGAGAAGATCAC 59.555 41.667 0.00 0.00 36.51 3.06
2542 2936 4.617959 ACGAGAAAAACACGAGAAGATCA 58.382 39.130 0.00 0.00 36.51 2.92
2543 2937 6.686130 TTACGAGAAAAACACGAGAAGATC 57.314 37.500 0.00 0.00 36.51 2.75
2544 2938 7.473027 TTTTACGAGAAAAACACGAGAAGAT 57.527 32.000 0.00 0.00 36.51 2.40
2545 2939 6.890663 TTTTACGAGAAAAACACGAGAAGA 57.109 33.333 0.00 0.00 36.51 2.87
2570 2964 9.436957 CAAAATAGGTGTCTCAACTAACTACAT 57.563 33.333 0.00 0.00 37.20 2.29
2571 2965 8.644216 TCAAAATAGGTGTCTCAACTAACTACA 58.356 33.333 0.00 0.00 37.20 2.74
2572 2966 9.141400 CTCAAAATAGGTGTCTCAACTAACTAC 57.859 37.037 0.00 0.00 37.20 2.73
2573 2967 9.085645 TCTCAAAATAGGTGTCTCAACTAACTA 57.914 33.333 0.00 0.00 37.20 2.24
2574 2968 7.873505 GTCTCAAAATAGGTGTCTCAACTAACT 59.126 37.037 0.00 0.00 37.20 2.24
2575 2969 7.656137 TGTCTCAAAATAGGTGTCTCAACTAAC 59.344 37.037 0.00 0.00 37.20 2.34
2576 2970 7.732025 TGTCTCAAAATAGGTGTCTCAACTAA 58.268 34.615 0.00 0.00 37.20 2.24
2577 2971 7.232737 TCTGTCTCAAAATAGGTGTCTCAACTA 59.767 37.037 0.00 0.00 38.08 2.24
2578 2972 6.042093 TCTGTCTCAAAATAGGTGTCTCAACT 59.958 38.462 0.00 0.00 34.83 3.16
2579 2973 6.223852 TCTGTCTCAAAATAGGTGTCTCAAC 58.776 40.000 0.00 0.00 0.00 3.18
2580 2974 6.419484 TCTGTCTCAAAATAGGTGTCTCAA 57.581 37.500 0.00 0.00 0.00 3.02
2581 2975 5.047021 CCTCTGTCTCAAAATAGGTGTCTCA 60.047 44.000 0.00 0.00 0.00 3.27
2582 2976 5.415221 CCTCTGTCTCAAAATAGGTGTCTC 58.585 45.833 0.00 0.00 0.00 3.36
2583 2977 4.223923 CCCTCTGTCTCAAAATAGGTGTCT 59.776 45.833 0.00 0.00 0.00 3.41
2584 2978 4.223032 TCCCTCTGTCTCAAAATAGGTGTC 59.777 45.833 0.00 0.00 0.00 3.67
2585 2979 4.168101 TCCCTCTGTCTCAAAATAGGTGT 58.832 43.478 0.00 0.00 0.00 4.16
2586 2980 4.223923 ACTCCCTCTGTCTCAAAATAGGTG 59.776 45.833 0.00 0.00 0.00 4.00
2587 2981 4.430441 ACTCCCTCTGTCTCAAAATAGGT 58.570 43.478 0.00 0.00 0.00 3.08
2588 2982 6.098982 ACATACTCCCTCTGTCTCAAAATAGG 59.901 42.308 0.00 0.00 0.00 2.57
2589 2983 7.118496 ACATACTCCCTCTGTCTCAAAATAG 57.882 40.000 0.00 0.00 0.00 1.73
2590 2984 7.180229 TCAACATACTCCCTCTGTCTCAAAATA 59.820 37.037 0.00 0.00 0.00 1.40
2591 2985 6.013379 TCAACATACTCCCTCTGTCTCAAAAT 60.013 38.462 0.00 0.00 0.00 1.82
2592 2986 5.306937 TCAACATACTCCCTCTGTCTCAAAA 59.693 40.000 0.00 0.00 0.00 2.44
2593 2987 4.838423 TCAACATACTCCCTCTGTCTCAAA 59.162 41.667 0.00 0.00 0.00 2.69
2594 2988 4.416516 TCAACATACTCCCTCTGTCTCAA 58.583 43.478 0.00 0.00 0.00 3.02
2595 2989 4.047627 TCAACATACTCCCTCTGTCTCA 57.952 45.455 0.00 0.00 0.00 3.27
2596 2990 4.646945 TGATCAACATACTCCCTCTGTCTC 59.353 45.833 0.00 0.00 0.00 3.36
2597 2991 4.614475 TGATCAACATACTCCCTCTGTCT 58.386 43.478 0.00 0.00 0.00 3.41
2598 2992 5.105146 AGTTGATCAACATACTCCCTCTGTC 60.105 44.000 33.92 7.30 43.47 3.51
2599 2993 4.780021 AGTTGATCAACATACTCCCTCTGT 59.220 41.667 33.92 11.09 43.47 3.41
2600 2994 5.105187 TCAGTTGATCAACATACTCCCTCTG 60.105 44.000 33.92 21.17 43.47 3.35
2601 2995 5.026121 TCAGTTGATCAACATACTCCCTCT 58.974 41.667 33.92 11.75 43.47 3.69
2602 2996 5.344743 TCAGTTGATCAACATACTCCCTC 57.655 43.478 33.92 8.98 43.47 4.30
2603 2997 5.965033 ATCAGTTGATCAACATACTCCCT 57.035 39.130 33.92 13.10 43.47 4.20
2616 3010 1.474478 ACGACGAGCTGATCAGTTGAT 59.526 47.619 23.38 8.13 37.51 2.57
2617 3011 0.881796 ACGACGAGCTGATCAGTTGA 59.118 50.000 23.38 0.00 0.00 3.18
2618 3012 0.987715 CACGACGAGCTGATCAGTTG 59.012 55.000 23.38 15.30 0.00 3.16
2619 3013 0.109086 CCACGACGAGCTGATCAGTT 60.109 55.000 23.38 18.35 0.00 3.16
2620 3014 0.960861 TCCACGACGAGCTGATCAGT 60.961 55.000 23.38 10.70 0.00 3.41
2621 3015 0.248417 CTCCACGACGAGCTGATCAG 60.248 60.000 18.84 18.84 0.00 2.90
2622 3016 0.676782 TCTCCACGACGAGCTGATCA 60.677 55.000 0.00 0.00 0.00 2.92
2623 3017 0.452184 TTCTCCACGACGAGCTGATC 59.548 55.000 0.00 0.00 0.00 2.92
2624 3018 0.888619 TTTCTCCACGACGAGCTGAT 59.111 50.000 0.00 0.00 0.00 2.90
2625 3019 0.039437 GTTTCTCCACGACGAGCTGA 60.039 55.000 0.00 0.00 0.00 4.26
2626 3020 0.039074 AGTTTCTCCACGACGAGCTG 60.039 55.000 0.00 0.00 0.00 4.24
2627 3021 0.039074 CAGTTTCTCCACGACGAGCT 60.039 55.000 0.00 0.00 0.00 4.09
2628 3022 0.318784 ACAGTTTCTCCACGACGAGC 60.319 55.000 0.00 0.00 0.00 5.03
2629 3023 1.409412 CACAGTTTCTCCACGACGAG 58.591 55.000 0.00 0.00 0.00 4.18
2630 3024 0.596600 GCACAGTTTCTCCACGACGA 60.597 55.000 0.00 0.00 0.00 4.20
2631 3025 0.597637 AGCACAGTTTCTCCACGACG 60.598 55.000 0.00 0.00 0.00 5.12
2632 3026 2.433868 TAGCACAGTTTCTCCACGAC 57.566 50.000 0.00 0.00 0.00 4.34
2633 3027 3.130516 CCTATAGCACAGTTTCTCCACGA 59.869 47.826 0.00 0.00 0.00 4.35
2634 3028 3.119101 ACCTATAGCACAGTTTCTCCACG 60.119 47.826 0.00 0.00 0.00 4.94
2635 3029 4.184629 CACCTATAGCACAGTTTCTCCAC 58.815 47.826 0.00 0.00 0.00 4.02
2636 3030 3.369471 GCACCTATAGCACAGTTTCTCCA 60.369 47.826 0.00 0.00 0.00 3.86
2637 3031 3.198872 GCACCTATAGCACAGTTTCTCC 58.801 50.000 0.00 0.00 0.00 3.71
2638 3032 3.861840 TGCACCTATAGCACAGTTTCTC 58.138 45.455 0.00 0.00 37.02 2.87
2639 3033 3.981071 TGCACCTATAGCACAGTTTCT 57.019 42.857 0.00 0.00 37.02 2.52
2647 3041 2.465860 AAACGTGTGCACCTATAGCA 57.534 45.000 15.69 0.00 40.19 3.49
2648 3042 3.824414 AAAAACGTGTGCACCTATAGC 57.176 42.857 15.69 0.00 0.00 2.97
2673 3067 4.336993 ACGTGTGCACCTATTTCTCAAAAA 59.663 37.500 15.69 0.00 0.00 1.94
2674 3068 3.880490 ACGTGTGCACCTATTTCTCAAAA 59.120 39.130 15.69 0.00 0.00 2.44
2675 3069 3.472652 ACGTGTGCACCTATTTCTCAAA 58.527 40.909 15.69 0.00 0.00 2.69
2676 3070 3.120321 ACGTGTGCACCTATTTCTCAA 57.880 42.857 15.69 0.00 0.00 3.02
2677 3071 2.831685 ACGTGTGCACCTATTTCTCA 57.168 45.000 15.69 0.00 0.00 3.27
2678 3072 3.581755 TGTACGTGTGCACCTATTTCTC 58.418 45.455 15.69 0.00 0.00 2.87
2679 3073 3.585862 CTGTACGTGTGCACCTATTTCT 58.414 45.455 15.69 0.00 0.00 2.52
2680 3074 2.093783 GCTGTACGTGTGCACCTATTTC 59.906 50.000 15.69 1.36 0.00 2.17
2681 3075 2.073816 GCTGTACGTGTGCACCTATTT 58.926 47.619 15.69 0.00 0.00 1.40
2682 3076 1.674817 GGCTGTACGTGTGCACCTATT 60.675 52.381 15.69 0.00 0.00 1.73
2683 3077 0.108329 GGCTGTACGTGTGCACCTAT 60.108 55.000 15.69 1.39 0.00 2.57
2684 3078 1.290955 GGCTGTACGTGTGCACCTA 59.709 57.895 15.69 0.00 0.00 3.08
2685 3079 2.030562 GGCTGTACGTGTGCACCT 59.969 61.111 15.69 0.00 0.00 4.00
2686 3080 2.280524 TGGCTGTACGTGTGCACC 60.281 61.111 15.69 4.74 0.00 5.01
2687 3081 2.604174 GGTGGCTGTACGTGTGCAC 61.604 63.158 10.75 10.75 0.00 4.57
2688 3082 2.280524 GGTGGCTGTACGTGTGCA 60.281 61.111 0.00 0.00 0.00 4.57
2689 3083 3.047877 GGGTGGCTGTACGTGTGC 61.048 66.667 0.00 0.00 0.00 4.57
2690 3084 2.736995 CGGGTGGCTGTACGTGTG 60.737 66.667 0.00 0.00 0.00 3.82
2691 3085 3.216944 GACGGGTGGCTGTACGTGT 62.217 63.158 0.00 0.00 39.95 4.49
2692 3086 2.431942 GACGGGTGGCTGTACGTG 60.432 66.667 0.00 0.00 39.95 4.49
2693 3087 4.047059 CGACGGGTGGCTGTACGT 62.047 66.667 0.00 0.00 42.88 3.57
2694 3088 4.047059 ACGACGGGTGGCTGTACG 62.047 66.667 0.00 0.00 0.00 3.67
2695 3089 2.431942 CACGACGGGTGGCTGTAC 60.432 66.667 0.00 0.00 43.16 2.90
2702 3096 0.944311 CAGTTTCTCCACGACGGGTG 60.944 60.000 0.00 2.22 46.57 4.61
2703 3097 1.366366 CAGTTTCTCCACGACGGGT 59.634 57.895 0.00 0.00 34.36 5.28
2704 3098 0.666577 GACAGTTTCTCCACGACGGG 60.667 60.000 0.00 0.00 34.36 5.28
2705 3099 0.031585 TGACAGTTTCTCCACGACGG 59.968 55.000 0.00 0.00 0.00 4.79
2706 3100 1.847818 TTGACAGTTTCTCCACGACG 58.152 50.000 0.00 0.00 0.00 5.12
2707 3101 4.557205 AGTATTGACAGTTTCTCCACGAC 58.443 43.478 0.00 0.00 0.00 4.34
2708 3102 4.866508 AGTATTGACAGTTTCTCCACGA 57.133 40.909 0.00 0.00 0.00 4.35
2721 3115 6.673616 CGCTGTACGTGTGCAAGTATTGAC 62.674 50.000 0.00 0.00 42.96 3.18
2722 3116 4.697222 CGCTGTACGTGTGCAAGTATTGA 61.697 47.826 0.00 0.00 42.96 2.57
2723 3117 2.472235 CGCTGTACGTGTGCAAGTATTG 60.472 50.000 0.00 0.59 43.11 1.90
2724 3118 1.724623 CGCTGTACGTGTGCAAGTATT 59.275 47.619 0.00 0.00 36.87 1.89
2725 3119 1.346365 CGCTGTACGTGTGCAAGTAT 58.654 50.000 0.00 0.00 36.87 2.12
2726 3120 1.279527 GCGCTGTACGTGTGCAAGTA 61.280 55.000 16.06 0.00 46.11 2.24
2727 3121 2.594962 GCGCTGTACGTGTGCAAGT 61.595 57.895 16.06 0.00 46.11 3.16
2728 3122 2.170985 GCGCTGTACGTGTGCAAG 59.829 61.111 16.06 0.00 46.11 4.01
2729 3123 2.279851 AGCGCTGTACGTGTGCAA 60.280 55.556 10.39 0.00 46.11 4.08
2730 3124 3.035503 CAGCGCTGTACGTGTGCA 61.036 61.111 29.24 1.55 46.11 4.57
2731 3125 3.777925 CCAGCGCTGTACGTGTGC 61.778 66.667 33.75 13.96 46.11 4.57
2732 3126 1.413767 GATCCAGCGCTGTACGTGTG 61.414 60.000 33.75 17.85 46.11 3.82
2733 3127 1.153823 GATCCAGCGCTGTACGTGT 60.154 57.895 33.75 13.92 46.11 4.49
2734 3128 2.224217 CGATCCAGCGCTGTACGTG 61.224 63.158 33.75 19.29 46.11 4.49
2735 3129 2.102357 CGATCCAGCGCTGTACGT 59.898 61.111 33.75 17.43 46.11 3.57
2737 3131 1.589196 GGTCGATCCAGCGCTGTAC 60.589 63.158 33.75 22.39 35.97 2.90
2738 3132 1.753078 AGGTCGATCCAGCGCTGTA 60.753 57.895 33.75 21.75 39.02 2.74
2739 3133 3.071206 AGGTCGATCCAGCGCTGT 61.071 61.111 33.75 18.58 39.02 4.40
2740 3134 2.584418 CAGGTCGATCCAGCGCTG 60.584 66.667 30.52 30.52 39.02 5.18
2741 3135 4.521062 GCAGGTCGATCCAGCGCT 62.521 66.667 2.64 2.64 38.86 5.92
2744 3138 2.543067 AAAGGGCAGGTCGATCCAGC 62.543 60.000 11.25 11.25 46.16 4.85
2745 3139 0.745845 CAAAGGGCAGGTCGATCCAG 60.746 60.000 0.00 0.00 39.02 3.86
2746 3140 1.299648 CAAAGGGCAGGTCGATCCA 59.700 57.895 0.00 0.00 39.02 3.41
2747 3141 0.322546 AACAAAGGGCAGGTCGATCC 60.323 55.000 0.00 0.00 0.00 3.36
2748 3142 0.804989 CAACAAAGGGCAGGTCGATC 59.195 55.000 0.00 0.00 0.00 3.69
2749 3143 1.244019 GCAACAAAGGGCAGGTCGAT 61.244 55.000 0.00 0.00 0.00 3.59
2750 3144 1.896660 GCAACAAAGGGCAGGTCGA 60.897 57.895 0.00 0.00 0.00 4.20
2751 3145 2.644992 GCAACAAAGGGCAGGTCG 59.355 61.111 0.00 0.00 0.00 4.79
2752 3146 3.051210 GGCAACAAAGGGCAGGTC 58.949 61.111 0.00 0.00 0.00 3.85
2767 3161 2.548127 GATTGTTTCGCTGCCCTGGC 62.548 60.000 0.00 0.00 42.35 4.85
2768 3162 1.508088 GATTGTTTCGCTGCCCTGG 59.492 57.895 0.00 0.00 0.00 4.45
2769 3163 1.135315 CGATTGTTTCGCTGCCCTG 59.865 57.895 0.00 0.00 41.69 4.45
2770 3164 3.578456 CGATTGTTTCGCTGCCCT 58.422 55.556 0.00 0.00 41.69 5.19
2788 3182 0.040958 GGCAAATGGCGCTATCGAAG 60.041 55.000 6.75 0.00 46.16 3.79
2789 3183 0.463654 AGGCAAATGGCGCTATCGAA 60.464 50.000 6.75 0.00 46.16 3.71
2790 3184 0.463654 AAGGCAAATGGCGCTATCGA 60.464 50.000 6.75 0.00 46.16 3.59
2791 3185 1.225855 TAAGGCAAATGGCGCTATCG 58.774 50.000 6.75 2.49 46.16 2.92
2792 3186 3.923017 AATAAGGCAAATGGCGCTATC 57.077 42.857 6.75 0.00 46.16 2.08
2793 3187 4.670896 AAAATAAGGCAAATGGCGCTAT 57.329 36.364 7.64 2.85 46.16 2.97
2794 3188 4.081972 TGAAAAATAAGGCAAATGGCGCTA 60.082 37.500 7.64 0.00 46.16 4.26
2795 3189 3.261580 GAAAAATAAGGCAAATGGCGCT 58.738 40.909 7.64 0.00 46.16 5.92
2796 3190 2.999355 TGAAAAATAAGGCAAATGGCGC 59.001 40.909 0.00 0.00 46.16 6.53
2797 3191 5.179182 AGTTTGAAAAATAAGGCAAATGGCG 59.821 36.000 0.98 0.00 46.16 5.69
2798 3192 6.372981 CAGTTTGAAAAATAAGGCAAATGGC 58.627 36.000 0.00 0.00 43.74 4.40
2799 3193 6.568271 GCCAGTTTGAAAAATAAGGCAAATGG 60.568 38.462 0.00 0.00 40.50 3.16
2800 3194 6.372981 GCCAGTTTGAAAAATAAGGCAAATG 58.627 36.000 0.00 0.00 40.50 2.32
2801 3195 5.473162 GGCCAGTTTGAAAAATAAGGCAAAT 59.527 36.000 0.00 0.00 42.49 2.32
2802 3196 4.819088 GGCCAGTTTGAAAAATAAGGCAAA 59.181 37.500 0.00 0.00 42.49 3.68
2803 3197 4.384940 GGCCAGTTTGAAAAATAAGGCAA 58.615 39.130 0.00 0.00 42.49 4.52
2804 3198 3.244387 GGGCCAGTTTGAAAAATAAGGCA 60.244 43.478 4.39 0.00 42.49 4.75
2805 3199 3.244387 TGGGCCAGTTTGAAAAATAAGGC 60.244 43.478 0.00 0.00 40.08 4.35
2806 3200 4.568956 CTGGGCCAGTTTGAAAAATAAGG 58.431 43.478 25.74 0.00 0.00 2.69
2807 3201 3.996363 GCTGGGCCAGTTTGAAAAATAAG 59.004 43.478 32.80 5.33 33.43 1.73
2808 3202 3.389329 TGCTGGGCCAGTTTGAAAAATAA 59.611 39.130 32.80 3.70 33.43 1.40
2809 3203 2.968574 TGCTGGGCCAGTTTGAAAAATA 59.031 40.909 32.80 5.88 33.43 1.40
2810 3204 1.767681 TGCTGGGCCAGTTTGAAAAAT 59.232 42.857 32.80 0.00 33.43 1.82
2811 3205 1.134551 GTGCTGGGCCAGTTTGAAAAA 60.135 47.619 32.80 7.66 33.43 1.94
2812 3206 0.463620 GTGCTGGGCCAGTTTGAAAA 59.536 50.000 32.80 9.00 33.43 2.29
2813 3207 1.733402 CGTGCTGGGCCAGTTTGAAA 61.733 55.000 32.80 10.69 33.43 2.69
2814 3208 2.192861 CGTGCTGGGCCAGTTTGAA 61.193 57.895 32.80 12.42 33.43 2.69
2815 3209 2.594303 CGTGCTGGGCCAGTTTGA 60.594 61.111 32.80 13.30 33.43 2.69
2816 3210 1.733402 TTTCGTGCTGGGCCAGTTTG 61.733 55.000 32.80 21.98 33.43 2.93
2817 3211 0.827507 ATTTCGTGCTGGGCCAGTTT 60.828 50.000 32.80 8.94 33.43 2.66
2818 3212 0.037590 TATTTCGTGCTGGGCCAGTT 59.962 50.000 32.80 12.65 33.43 3.16
2819 3213 0.676782 GTATTTCGTGCTGGGCCAGT 60.677 55.000 32.80 15.06 33.43 4.00
2820 3214 1.705337 CGTATTTCGTGCTGGGCCAG 61.705 60.000 29.44 29.44 34.52 4.85
2821 3215 1.743623 CGTATTTCGTGCTGGGCCA 60.744 57.895 5.85 5.85 34.52 5.36
2822 3216 2.469516 CCGTATTTCGTGCTGGGCC 61.470 63.158 0.00 0.00 37.94 5.80
2823 3217 3.098555 CCGTATTTCGTGCTGGGC 58.901 61.111 0.00 0.00 37.94 5.36
2824 3218 1.429148 GAGCCGTATTTCGTGCTGGG 61.429 60.000 7.62 0.00 42.62 4.45
2825 3219 0.460284 AGAGCCGTATTTCGTGCTGG 60.460 55.000 7.62 0.00 42.62 4.85
2826 3220 1.359848 AAGAGCCGTATTTCGTGCTG 58.640 50.000 7.62 0.00 42.62 4.41
2827 3221 2.094762 AAAGAGCCGTATTTCGTGCT 57.905 45.000 0.00 0.00 44.19 4.40
2828 3222 2.894307 AAAAGAGCCGTATTTCGTGC 57.106 45.000 0.00 0.00 37.94 5.34
2829 3223 3.187637 TGGAAAAAGAGCCGTATTTCGTG 59.812 43.478 0.00 0.00 37.94 4.35
2830 3224 3.404899 TGGAAAAAGAGCCGTATTTCGT 58.595 40.909 0.00 0.00 37.94 3.85
2831 3225 4.495844 GGATGGAAAAAGAGCCGTATTTCG 60.496 45.833 0.00 0.00 33.62 3.46
2832 3226 4.202020 GGGATGGAAAAAGAGCCGTATTTC 60.202 45.833 0.00 0.00 0.00 2.17
2833 3227 3.699538 GGGATGGAAAAAGAGCCGTATTT 59.300 43.478 0.00 0.00 0.00 1.40
2834 3228 3.288092 GGGATGGAAAAAGAGCCGTATT 58.712 45.455 0.00 0.00 0.00 1.89
2835 3229 2.241176 TGGGATGGAAAAAGAGCCGTAT 59.759 45.455 0.00 0.00 0.00 3.06
2836 3230 1.631388 TGGGATGGAAAAAGAGCCGTA 59.369 47.619 0.00 0.00 0.00 4.02
2837 3231 0.404040 TGGGATGGAAAAAGAGCCGT 59.596 50.000 0.00 0.00 0.00 5.68
2838 3232 1.767759 ATGGGATGGAAAAAGAGCCG 58.232 50.000 0.00 0.00 0.00 5.52
2839 3233 2.432146 GGAATGGGATGGAAAAAGAGCC 59.568 50.000 0.00 0.00 0.00 4.70
2840 3234 2.432146 GGGAATGGGATGGAAAAAGAGC 59.568 50.000 0.00 0.00 0.00 4.09
2841 3235 2.689983 CGGGAATGGGATGGAAAAAGAG 59.310 50.000 0.00 0.00 0.00 2.85
2842 3236 2.310349 TCGGGAATGGGATGGAAAAAGA 59.690 45.455 0.00 0.00 0.00 2.52
2843 3237 2.427095 GTCGGGAATGGGATGGAAAAAG 59.573 50.000 0.00 0.00 0.00 2.27
2844 3238 2.225142 TGTCGGGAATGGGATGGAAAAA 60.225 45.455 0.00 0.00 0.00 1.94
2845 3239 1.356059 TGTCGGGAATGGGATGGAAAA 59.644 47.619 0.00 0.00 0.00 2.29
2846 3240 0.995803 TGTCGGGAATGGGATGGAAA 59.004 50.000 0.00 0.00 0.00 3.13
2847 3241 1.133823 CATGTCGGGAATGGGATGGAA 60.134 52.381 0.00 0.00 0.00 3.53
2848 3242 0.473755 CATGTCGGGAATGGGATGGA 59.526 55.000 0.00 0.00 0.00 3.41
2849 3243 0.473755 TCATGTCGGGAATGGGATGG 59.526 55.000 0.00 0.00 0.00 3.51
2850 3244 1.141657 AGTCATGTCGGGAATGGGATG 59.858 52.381 0.00 0.00 0.00 3.51
2851 3245 1.417890 GAGTCATGTCGGGAATGGGAT 59.582 52.381 0.00 0.00 0.00 3.85
2852 3246 0.830648 GAGTCATGTCGGGAATGGGA 59.169 55.000 0.00 0.00 0.00 4.37
2853 3247 0.833287 AGAGTCATGTCGGGAATGGG 59.167 55.000 0.00 0.00 0.00 4.00
2854 3248 1.482182 TCAGAGTCATGTCGGGAATGG 59.518 52.381 0.00 0.00 0.00 3.16
2855 3249 2.932614 GTTCAGAGTCATGTCGGGAATG 59.067 50.000 0.00 0.00 0.00 2.67
2856 3250 2.834549 AGTTCAGAGTCATGTCGGGAAT 59.165 45.455 0.00 0.00 0.00 3.01
2857 3251 2.029020 CAGTTCAGAGTCATGTCGGGAA 60.029 50.000 0.00 0.00 0.00 3.97
2858 3252 1.546029 CAGTTCAGAGTCATGTCGGGA 59.454 52.381 0.00 0.00 0.00 5.14
2859 3253 1.404717 CCAGTTCAGAGTCATGTCGGG 60.405 57.143 0.00 0.00 0.00 5.14
2860 3254 1.546029 TCCAGTTCAGAGTCATGTCGG 59.454 52.381 0.00 0.00 0.00 4.79
2861 3255 2.600731 GTCCAGTTCAGAGTCATGTCG 58.399 52.381 0.00 0.00 0.00 4.35
2862 3256 2.600731 CGTCCAGTTCAGAGTCATGTC 58.399 52.381 0.00 0.00 0.00 3.06
2863 3257 1.337260 GCGTCCAGTTCAGAGTCATGT 60.337 52.381 0.00 0.00 0.00 3.21
2864 3258 1.067283 AGCGTCCAGTTCAGAGTCATG 60.067 52.381 0.00 0.00 0.00 3.07
2865 3259 1.067283 CAGCGTCCAGTTCAGAGTCAT 60.067 52.381 0.00 0.00 0.00 3.06
2866 3260 0.315251 CAGCGTCCAGTTCAGAGTCA 59.685 55.000 0.00 0.00 0.00 3.41
2867 3261 0.598562 TCAGCGTCCAGTTCAGAGTC 59.401 55.000 0.00 0.00 0.00 3.36
2868 3262 1.067283 CATCAGCGTCCAGTTCAGAGT 60.067 52.381 0.00 0.00 0.00 3.24
2869 3263 1.638133 CATCAGCGTCCAGTTCAGAG 58.362 55.000 0.00 0.00 0.00 3.35
2870 3264 0.247460 CCATCAGCGTCCAGTTCAGA 59.753 55.000 0.00 0.00 0.00 3.27
2871 3265 0.247460 TCCATCAGCGTCCAGTTCAG 59.753 55.000 0.00 0.00 0.00 3.02
2872 3266 0.684535 TTCCATCAGCGTCCAGTTCA 59.315 50.000 0.00 0.00 0.00 3.18
2873 3267 1.079503 GTTCCATCAGCGTCCAGTTC 58.920 55.000 0.00 0.00 0.00 3.01
2874 3268 0.670546 CGTTCCATCAGCGTCCAGTT 60.671 55.000 0.00 0.00 0.00 3.16
2875 3269 1.079819 CGTTCCATCAGCGTCCAGT 60.080 57.895 0.00 0.00 0.00 4.00
2876 3270 1.811266 CCGTTCCATCAGCGTCCAG 60.811 63.158 0.00 0.00 0.00 3.86
2877 3271 2.264480 CCGTTCCATCAGCGTCCA 59.736 61.111 0.00 0.00 0.00 4.02
2878 3272 2.511600 CCCGTTCCATCAGCGTCC 60.512 66.667 0.00 0.00 0.00 4.79
2879 3273 1.519455 CTCCCGTTCCATCAGCGTC 60.519 63.158 0.00 0.00 0.00 5.19
2880 3274 2.579201 CTCCCGTTCCATCAGCGT 59.421 61.111 0.00 0.00 0.00 5.07
2881 3275 2.892425 GCTCCCGTTCCATCAGCG 60.892 66.667 0.00 0.00 0.00 5.18
2882 3276 1.522580 GAGCTCCCGTTCCATCAGC 60.523 63.158 0.87 0.00 0.00 4.26
2883 3277 1.227089 CGAGCTCCCGTTCCATCAG 60.227 63.158 8.47 0.00 0.00 2.90
2884 3278 2.892640 CGAGCTCCCGTTCCATCA 59.107 61.111 8.47 0.00 0.00 3.07
2885 3279 2.586357 GCGAGCTCCCGTTCCATC 60.586 66.667 8.47 0.00 0.00 3.51
2886 3280 4.514577 CGCGAGCTCCCGTTCCAT 62.515 66.667 12.62 0.00 0.00 3.41
2888 3282 4.856607 CTCGCGAGCTCCCGTTCC 62.857 72.222 25.07 0.00 0.00 3.62
2889 3283 4.856607 CCTCGCGAGCTCCCGTTC 62.857 72.222 30.49 0.00 0.00 3.95
2894 3288 4.273257 GTAGGCCTCGCGAGCTCC 62.273 72.222 30.49 28.88 0.00 4.70
2895 3289 4.273257 GGTAGGCCTCGCGAGCTC 62.273 72.222 30.49 22.25 0.00 4.09
2897 3291 4.874977 GTGGTAGGCCTCGCGAGC 62.875 72.222 30.49 23.62 35.27 5.03
2898 3292 4.208686 GGTGGTAGGCCTCGCGAG 62.209 72.222 29.06 29.06 35.27 5.03
2900 3294 4.814294 GTGGTGGTAGGCCTCGCG 62.814 72.222 9.68 0.00 35.27 5.87
2901 3295 4.468689 GGTGGTGGTAGGCCTCGC 62.469 72.222 9.68 1.45 35.27 5.03
2902 3296 3.782443 GGGTGGTGGTAGGCCTCG 61.782 72.222 9.68 0.00 35.27 4.63
2903 3297 2.609610 TGGGTGGTGGTAGGCCTC 60.610 66.667 9.68 0.00 35.27 4.70
2904 3298 2.933834 GTGGGTGGTGGTAGGCCT 60.934 66.667 11.78 11.78 35.27 5.19
2905 3299 4.404098 CGTGGGTGGTGGTAGGCC 62.404 72.222 0.00 0.00 0.00 5.19
2906 3300 4.404098 CCGTGGGTGGTGGTAGGC 62.404 72.222 0.00 0.00 0.00 3.93
2907 3301 4.404098 GCCGTGGGTGGTGGTAGG 62.404 72.222 0.00 0.00 0.00 3.18
2908 3302 4.404098 GGCCGTGGGTGGTGGTAG 62.404 72.222 0.00 0.00 0.00 3.18
2927 3321 4.209866 ATGCTCCCCATTCCCCGC 62.210 66.667 0.00 0.00 0.00 6.13
2928 3322 1.705002 TACATGCTCCCCATTCCCCG 61.705 60.000 0.00 0.00 29.71 5.73
2929 3323 0.178990 GTACATGCTCCCCATTCCCC 60.179 60.000 0.00 0.00 29.71 4.81
2930 3324 0.535102 CGTACATGCTCCCCATTCCC 60.535 60.000 0.00 0.00 29.71 3.97
2931 3325 0.535102 CCGTACATGCTCCCCATTCC 60.535 60.000 0.00 0.00 29.71 3.01
2932 3326 1.166531 GCCGTACATGCTCCCCATTC 61.167 60.000 0.00 0.00 29.71 2.67
2933 3327 1.152963 GCCGTACATGCTCCCCATT 60.153 57.895 0.00 0.00 29.71 3.16
2934 3328 2.510906 GCCGTACATGCTCCCCAT 59.489 61.111 0.00 0.00 33.39 4.00
2935 3329 3.792736 GGCCGTACATGCTCCCCA 61.793 66.667 0.00 0.00 0.00 4.96
2936 3330 4.564110 GGGCCGTACATGCTCCCC 62.564 72.222 0.00 0.00 0.00 4.81
2937 3331 4.910585 CGGGCCGTACATGCTCCC 62.911 72.222 19.97 0.00 0.00 4.30
2938 3332 3.165160 ATCGGGCCGTACATGCTCC 62.165 63.158 27.32 3.86 0.00 4.70
2939 3333 1.664965 GATCGGGCCGTACATGCTC 60.665 63.158 27.32 8.56 0.00 4.26
2940 3334 2.421739 GATCGGGCCGTACATGCT 59.578 61.111 27.32 2.85 0.00 3.79
2941 3335 3.036084 CGATCGGGCCGTACATGC 61.036 66.667 27.32 8.88 0.00 4.06
2942 3336 3.036084 GCGATCGGGCCGTACATG 61.036 66.667 27.32 13.33 0.00 3.21
2943 3337 4.295119 GGCGATCGGGCCGTACAT 62.295 66.667 27.32 12.62 44.40 2.29
2954 3348 2.177654 TTTTTGGTGCGACGGCGATC 62.178 55.000 18.90 5.77 44.10 3.69
2955 3349 2.255172 TTTTTGGTGCGACGGCGAT 61.255 52.632 18.90 0.00 44.10 4.58
2956 3350 2.895865 TTTTTGGTGCGACGGCGA 60.896 55.556 18.90 0.00 44.10 5.54
2972 3366 3.361977 AGTCGGCCGCGCATTTTT 61.362 55.556 23.51 0.00 0.00 1.94
2973 3367 4.101790 CAGTCGGCCGCGCATTTT 62.102 61.111 23.51 0.00 0.00 1.82
2991 3385 2.529005 TTTCCAGAGAGAGCGACGCG 62.529 60.000 15.18 3.53 0.00 6.01
2992 3386 0.800300 CTTTCCAGAGAGAGCGACGC 60.800 60.000 13.03 13.03 0.00 5.19
2993 3387 0.523966 ACTTTCCAGAGAGAGCGACG 59.476 55.000 0.00 0.00 0.00 5.12
2994 3388 2.098443 CCTACTTTCCAGAGAGAGCGAC 59.902 54.545 0.00 0.00 0.00 5.19
2995 3389 2.291024 ACCTACTTTCCAGAGAGAGCGA 60.291 50.000 0.00 0.00 0.00 4.93
2996 3390 2.096248 ACCTACTTTCCAGAGAGAGCG 58.904 52.381 0.00 0.00 0.00 5.03
2997 3391 2.429250 GGACCTACTTTCCAGAGAGAGC 59.571 54.545 0.00 0.00 32.82 4.09
2998 3392 3.702792 TGGACCTACTTTCCAGAGAGAG 58.297 50.000 0.00 0.00 38.28 3.20
2999 3393 3.827817 TGGACCTACTTTCCAGAGAGA 57.172 47.619 0.00 0.00 38.28 3.10
3005 3399 2.266279 CTTCCCTGGACCTACTTTCCA 58.734 52.381 0.00 0.00 41.06 3.53
3006 3400 1.065345 GCTTCCCTGGACCTACTTTCC 60.065 57.143 0.00 0.00 0.00 3.13
3007 3401 1.628846 TGCTTCCCTGGACCTACTTTC 59.371 52.381 0.00 0.00 0.00 2.62
3008 3402 1.742308 TGCTTCCCTGGACCTACTTT 58.258 50.000 0.00 0.00 0.00 2.66
3009 3403 1.630878 CTTGCTTCCCTGGACCTACTT 59.369 52.381 0.00 0.00 0.00 2.24
3010 3404 1.280457 CTTGCTTCCCTGGACCTACT 58.720 55.000 0.00 0.00 0.00 2.57
3011 3405 0.393132 GCTTGCTTCCCTGGACCTAC 60.393 60.000 0.00 0.00 0.00 3.18
3012 3406 0.840288 TGCTTGCTTCCCTGGACCTA 60.840 55.000 0.00 0.00 0.00 3.08
3013 3407 2.134630 CTGCTTGCTTCCCTGGACCT 62.135 60.000 0.00 0.00 0.00 3.85
3014 3408 1.676967 CTGCTTGCTTCCCTGGACC 60.677 63.158 0.00 0.00 0.00 4.46
3015 3409 2.338785 GCTGCTTGCTTCCCTGGAC 61.339 63.158 0.00 0.00 38.95 4.02
3016 3410 2.034687 GCTGCTTGCTTCCCTGGA 59.965 61.111 0.00 0.00 38.95 3.86
3017 3411 3.066814 GGCTGCTTGCTTCCCTGG 61.067 66.667 0.00 0.00 42.39 4.45
3018 3412 2.282674 TGGCTGCTTGCTTCCCTG 60.283 61.111 0.00 0.00 42.39 4.45
3019 3413 2.035312 CTGGCTGCTTGCTTCCCT 59.965 61.111 0.00 0.00 42.39 4.20
3020 3414 3.066814 CCTGGCTGCTTGCTTCCC 61.067 66.667 0.00 0.00 42.39 3.97
3021 3415 3.756727 GCCTGGCTGCTTGCTTCC 61.757 66.667 12.43 0.00 42.39 3.46
3022 3416 3.756727 GGCCTGGCTGCTTGCTTC 61.757 66.667 19.68 0.00 42.39 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.