Multiple sequence alignment - TraesCS3D01G400000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G400000 chr3D 100.000 5329 0 0 1 5329 515000928 515006256 0.000000e+00 9841.0
1 TraesCS3D01G400000 chr3D 86.228 334 29 6 5008 5326 449745984 449746315 3.950000e-91 346.0
2 TraesCS3D01G400000 chr3D 85.000 340 30 7 5004 5326 6531577 6531242 5.150000e-85 326.0
3 TraesCS3D01G400000 chr3B 91.606 3419 194 35 56 3436 677613859 677617222 0.000000e+00 4638.0
4 TraesCS3D01G400000 chr3B 91.977 1371 54 27 3464 4808 677617364 677618704 0.000000e+00 1871.0
5 TraesCS3D01G400000 chr3B 83.871 341 38 10 5004 5329 594819048 594818710 5.180000e-80 309.0
6 TraesCS3D01G400000 chr3A 90.698 3494 203 38 1 3436 649630355 649633784 0.000000e+00 4540.0
7 TraesCS3D01G400000 chr3A 91.076 1199 71 15 3436 4606 649633827 649635017 0.000000e+00 1589.0
8 TraesCS3D01G400000 chr3A 81.098 164 19 8 4838 4990 649635278 649635440 2.610000e-23 121.0
9 TraesCS3D01G400000 chr3A 97.368 38 1 0 4591 4628 649635037 649635074 1.240000e-06 65.8
10 TraesCS3D01G400000 chr4B 86.686 338 30 6 5004 5327 551784077 551784413 1.410000e-95 361.0
11 TraesCS3D01G400000 chr4B 86.510 341 29 8 5004 5329 656167792 656167454 5.070000e-95 359.0
12 TraesCS3D01G400000 chr4B 86.053 337 34 4 5004 5327 551729469 551729805 3.050000e-92 350.0
13 TraesCS3D01G400000 chr5B 86.176 340 32 8 5003 5329 407221917 407222254 2.360000e-93 353.0
14 TraesCS3D01G400000 chr7B 85.174 344 28 6 5009 5329 238000519 238000862 1.110000e-86 331.0
15 TraesCS3D01G400000 chr4D 84.751 341 35 10 5004 5329 493971724 493971386 5.150000e-85 326.0
16 TraesCS3D01G400000 chr4D 84.726 347 26 9 5004 5327 414224955 414225297 6.660000e-84 322.0
17 TraesCS3D01G400000 chr4D 92.308 182 14 0 5146 5327 460670499 460670318 5.290000e-65 259.0
18 TraesCS3D01G400000 chr2A 84.726 347 30 3 5004 5327 769257721 769258067 5.150000e-85 326.0
19 TraesCS3D01G400000 chr4A 84.776 335 37 5 5004 5325 19186579 19186246 1.850000e-84 324.0
20 TraesCS3D01G400000 chr4A 84.393 346 28 9 5004 5326 60890968 60891310 3.100000e-82 316.0
21 TraesCS3D01G400000 chr1D 83.036 336 42 8 5008 5329 429019575 429019909 1.880000e-74 291.0
22 TraesCS3D01G400000 chr5A 82.738 336 43 8 5008 5329 78332099 78332433 8.740000e-73 285.0
23 TraesCS3D01G400000 chr7D 92.391 184 14 0 5146 5329 554903184 554903367 4.090000e-66 263.0
24 TraesCS3D01G400000 chr7D 91.257 183 16 0 5147 5329 235569800 235569618 3.190000e-62 250.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G400000 chr3D 515000928 515006256 5328 False 9841.00 9841 100.0000 1 5329 1 chr3D.!!$F2 5328
1 TraesCS3D01G400000 chr3B 677613859 677618704 4845 False 3254.50 4638 91.7915 56 4808 2 chr3B.!!$F1 4752
2 TraesCS3D01G400000 chr3A 649630355 649635440 5085 False 1578.95 4540 90.0600 1 4990 4 chr3A.!!$F1 4989

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
342 369 0.033504 TTGACCTCTGCGACTTCACC 59.966 55.0 0.0 0.0 0.00 4.02 F
345 372 0.034059 ACCTCTGCGACTTCACCTTG 59.966 55.0 0.0 0.0 0.00 3.61 F
347 374 0.034059 CTCTGCGACTTCACCTTGGT 59.966 55.0 0.0 0.0 0.00 3.67 F
1801 1851 0.531311 AGGTTTTGGTCACGACGGTC 60.531 55.0 0.0 0.0 0.00 4.79 F
2171 2225 0.750850 TATACGCCCAAGAGCCTGAC 59.249 55.0 0.0 0.0 0.00 3.51 F
3628 3821 0.179084 ACACGGTCACACCTGAACTG 60.179 55.0 0.0 0.0 35.66 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1200 1248 0.389391 TGAATCTACTAGCTGGCGGC 59.611 55.0 11.19 11.19 42.19 6.53 R
2314 2368 0.527817 GTAATCCTGCGAGTCCGTGG 60.528 60.0 0.00 0.00 38.24 4.94 R
2346 2400 0.470456 TGACACCTGTAACCCCGAGT 60.470 55.0 0.00 0.00 0.00 4.18 R
2682 2736 0.171903 GATGTGCCACACTTGATGCC 59.828 55.0 0.00 0.00 35.11 4.40 R
3752 3947 0.462047 GACCAGTACCTTCATGGCCG 60.462 60.0 0.00 0.00 40.22 6.13 R
5121 5426 0.034767 CAAGCATTCTCAGGGAGCCA 60.035 55.0 0.00 0.00 0.00 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.548441 TCCACGGTAAGTTCAATTTTAGTG 57.452 37.500 0.00 0.00 0.00 2.74
44 46 1.429463 CTCTTCGTTTTCCCCTCGTG 58.571 55.000 0.00 0.00 0.00 4.35
50 52 1.735571 CGTTTTCCCCTCGTGTTATGG 59.264 52.381 0.00 0.00 0.00 2.74
53 55 3.899052 TTTCCCCTCGTGTTATGGTAG 57.101 47.619 0.00 0.00 0.00 3.18
96 102 1.931635 TGGTGCAAAGTAATTCCCCC 58.068 50.000 0.00 0.00 0.00 5.40
104 110 4.994852 GCAAAGTAATTCCCCCTTTTCAAC 59.005 41.667 0.00 0.00 0.00 3.18
131 137 5.226396 CCAAACGGCAATTATGTTCTTCAA 58.774 37.500 0.00 0.00 0.00 2.69
147 172 7.327975 TGTTCTTCAACTCTCTTTACTGTTCA 58.672 34.615 0.00 0.00 33.17 3.18
157 182 5.708697 TCTCTTTACTGTTCACATAGACCGA 59.291 40.000 0.00 0.00 0.00 4.69
213 238 2.362503 CTTTTCCCCTTCGCCCCC 60.363 66.667 0.00 0.00 0.00 5.40
224 249 2.021457 CTTCGCCCCCGTATTTCAAAT 58.979 47.619 0.00 0.00 35.54 2.32
236 262 8.903820 CCCCGTATTTCAAATATCTTTTTCTCT 58.096 33.333 0.00 0.00 0.00 3.10
239 265 9.226345 CGTATTTCAAATATCTTTTTCTCTGGC 57.774 33.333 0.00 0.00 0.00 4.85
241 267 7.447374 TTTCAAATATCTTTTTCTCTGGCGA 57.553 32.000 0.00 0.00 0.00 5.54
252 279 5.446143 TTTCTCTGGCGAAAATTTGCTTA 57.554 34.783 5.42 0.00 37.71 3.09
289 316 4.074970 GTTGGCCTTTCTCTGAATTCTCA 58.925 43.478 3.32 0.00 0.00 3.27
326 353 8.750298 AGATTTCCGTATCTCTCTTTTACTTGA 58.250 33.333 0.00 0.00 28.74 3.02
334 361 3.914312 TCTCTTTTACTTGACCTCTGCG 58.086 45.455 0.00 0.00 0.00 5.18
335 362 3.572682 TCTCTTTTACTTGACCTCTGCGA 59.427 43.478 0.00 0.00 0.00 5.10
336 363 3.650139 TCTTTTACTTGACCTCTGCGAC 58.350 45.455 0.00 0.00 0.00 5.19
337 364 3.321111 TCTTTTACTTGACCTCTGCGACT 59.679 43.478 0.00 0.00 0.00 4.18
338 365 3.746045 TTTACTTGACCTCTGCGACTT 57.254 42.857 0.00 0.00 0.00 3.01
339 366 3.299340 TTACTTGACCTCTGCGACTTC 57.701 47.619 0.00 0.00 0.00 3.01
340 367 1.040646 ACTTGACCTCTGCGACTTCA 58.959 50.000 0.00 0.00 0.00 3.02
341 368 1.269831 ACTTGACCTCTGCGACTTCAC 60.270 52.381 0.00 0.00 0.00 3.18
342 369 0.033504 TTGACCTCTGCGACTTCACC 59.966 55.000 0.00 0.00 0.00 4.02
343 370 0.827925 TGACCTCTGCGACTTCACCT 60.828 55.000 0.00 0.00 0.00 4.00
344 371 0.318762 GACCTCTGCGACTTCACCTT 59.681 55.000 0.00 0.00 0.00 3.50
345 372 0.034059 ACCTCTGCGACTTCACCTTG 59.966 55.000 0.00 0.00 0.00 3.61
346 373 0.671781 CCTCTGCGACTTCACCTTGG 60.672 60.000 0.00 0.00 0.00 3.61
347 374 0.034059 CTCTGCGACTTCACCTTGGT 59.966 55.000 0.00 0.00 0.00 3.67
348 375 1.272490 CTCTGCGACTTCACCTTGGTA 59.728 52.381 0.00 0.00 0.00 3.25
349 376 1.899814 TCTGCGACTTCACCTTGGTAT 59.100 47.619 0.00 0.00 0.00 2.73
350 377 3.093814 TCTGCGACTTCACCTTGGTATA 58.906 45.455 0.00 0.00 0.00 1.47
351 378 3.704566 TCTGCGACTTCACCTTGGTATAT 59.295 43.478 0.00 0.00 0.00 0.86
352 379 3.792401 TGCGACTTCACCTTGGTATATG 58.208 45.455 0.00 0.00 0.00 1.78
353 380 2.544267 GCGACTTCACCTTGGTATATGC 59.456 50.000 0.00 0.00 0.00 3.14
354 381 3.741388 GCGACTTCACCTTGGTATATGCT 60.741 47.826 0.00 0.00 0.00 3.79
355 382 4.442706 CGACTTCACCTTGGTATATGCTT 58.557 43.478 0.00 0.00 0.00 3.91
356 383 4.876107 CGACTTCACCTTGGTATATGCTTT 59.124 41.667 0.00 0.00 0.00 3.51
357 384 5.220662 CGACTTCACCTTGGTATATGCTTTG 60.221 44.000 0.00 0.00 0.00 2.77
358 385 4.949856 ACTTCACCTTGGTATATGCTTTGG 59.050 41.667 0.00 0.00 0.00 3.28
435 464 3.578716 TGGGTTGTTGAGAAGAGGAGTAG 59.421 47.826 0.00 0.00 0.00 2.57
436 465 3.579151 GGGTTGTTGAGAAGAGGAGTAGT 59.421 47.826 0.00 0.00 0.00 2.73
440 469 3.005897 TGTTGAGAAGAGGAGTAGTGTGC 59.994 47.826 0.00 0.00 0.00 4.57
465 494 2.785269 TGCCTCCATATGATTCTGGGTT 59.215 45.455 3.65 0.00 33.13 4.11
468 497 4.689705 GCCTCCATATGATTCTGGGTTGAA 60.690 45.833 3.65 0.00 33.13 2.69
470 499 5.163163 CCTCCATATGATTCTGGGTTGAAGA 60.163 44.000 3.65 0.00 33.13 2.87
660 707 1.995542 TCCTTGGATTCTGGCCTCTTT 59.004 47.619 3.32 0.00 0.00 2.52
672 719 6.374417 TCTGGCCTCTTTAGAAAGTAACAT 57.626 37.500 3.32 0.00 37.31 2.71
673 720 6.407202 TCTGGCCTCTTTAGAAAGTAACATC 58.593 40.000 3.32 0.00 37.31 3.06
704 752 3.364277 GCCTTCGGCTCGAATAAGT 57.636 52.632 9.88 0.00 46.69 2.24
856 904 1.374343 CGTCCACGTCTAGCAGGCTA 61.374 60.000 0.49 0.49 34.11 3.93
988 1036 3.654806 ACCCAGCTATGATGAATTAGCCT 59.345 43.478 0.00 0.00 36.29 4.58
991 1039 5.311265 CCAGCTATGATGAATTAGCCTGAA 58.689 41.667 0.00 0.00 36.29 3.02
1200 1248 4.274459 CAGTTCTGTTCCTGGAAAGAGTTG 59.726 45.833 11.40 12.74 0.00 3.16
1203 1253 0.875059 GTTCCTGGAAAGAGTTGCCG 59.125 55.000 11.40 0.00 0.00 5.69
1231 1281 4.734398 AGTAGATTCACCTGCTTCTCTG 57.266 45.455 0.00 0.00 0.00 3.35
1506 1556 3.054434 CCTTGGAATACAGTGGTGATGGA 60.054 47.826 0.00 0.00 0.00 3.41
1614 1664 1.002868 AGCTGCACATGAGACCACC 60.003 57.895 0.00 0.00 0.00 4.61
1677 1727 3.320256 AGGACTTCCGTAACGAACTTTCT 59.680 43.478 0.00 0.00 42.08 2.52
1722 1772 3.057315 CCAGAATTTCACAGCAAACCGAT 60.057 43.478 0.00 0.00 0.00 4.18
1735 1785 3.681594 GCAAACCGATCAGGATGGTAGAA 60.682 47.826 10.05 0.00 45.00 2.10
1786 1836 2.610232 GCCGATGTTGAAAATGCAGGTT 60.610 45.455 0.00 0.00 0.00 3.50
1794 1844 3.791245 TGAAAATGCAGGTTTTGGTCAC 58.209 40.909 2.82 0.00 31.80 3.67
1797 1847 0.951558 ATGCAGGTTTTGGTCACGAC 59.048 50.000 0.00 0.00 0.00 4.34
1801 1851 0.531311 AGGTTTTGGTCACGACGGTC 60.531 55.000 0.00 0.00 0.00 4.79
1813 1863 1.446966 GACGGTCTTGGAGCAGCTC 60.447 63.158 14.69 14.69 0.00 4.09
1845 1895 4.384208 GCAAGGGCTCCTAGAAGAAATACA 60.384 45.833 0.00 0.00 36.96 2.29
1908 1958 4.085312 CCAAAATCGGTTAAAACTGTTGCG 60.085 41.667 0.00 0.00 36.65 4.85
2008 2058 5.557891 ATCACTGCTGCTTTTATCTTGTC 57.442 39.130 0.00 0.00 0.00 3.18
2010 2060 4.821260 TCACTGCTGCTTTTATCTTGTCAA 59.179 37.500 0.00 0.00 0.00 3.18
2011 2061 5.049198 TCACTGCTGCTTTTATCTTGTCAAG 60.049 40.000 6.21 6.21 0.00 3.02
2013 2063 5.532406 ACTGCTGCTTTTATCTTGTCAAGAA 59.468 36.000 18.93 6.40 41.63 2.52
2014 2064 6.208204 ACTGCTGCTTTTATCTTGTCAAGAAT 59.792 34.615 18.93 10.24 41.63 2.40
2015 2065 6.985117 TGCTGCTTTTATCTTGTCAAGAATT 58.015 32.000 18.93 6.65 41.63 2.17
2016 2066 7.436118 TGCTGCTTTTATCTTGTCAAGAATTT 58.564 30.769 18.93 5.94 41.63 1.82
2017 2067 7.927629 TGCTGCTTTTATCTTGTCAAGAATTTT 59.072 29.630 18.93 5.58 41.63 1.82
2019 2069 8.075593 TGCTTTTATCTTGTCAAGAATTTTGC 57.924 30.769 18.93 18.48 41.63 3.68
2020 2070 7.927629 TGCTTTTATCTTGTCAAGAATTTTGCT 59.072 29.630 18.93 3.82 41.63 3.91
2021 2071 8.219105 GCTTTTATCTTGTCAAGAATTTTGCTG 58.781 33.333 18.93 6.59 41.63 4.41
2022 2072 7.642071 TTTATCTTGTCAAGAATTTTGCTGC 57.358 32.000 18.93 0.00 41.63 5.25
2023 2073 3.981211 TCTTGTCAAGAATTTTGCTGCC 58.019 40.909 13.00 0.00 33.83 4.85
2024 2074 2.420628 TGTCAAGAATTTTGCTGCCG 57.579 45.000 0.00 0.00 0.00 5.69
2027 2077 3.123050 GTCAAGAATTTTGCTGCCGTTT 58.877 40.909 0.00 0.00 0.00 3.60
2028 2078 4.202060 TGTCAAGAATTTTGCTGCCGTTTA 60.202 37.500 0.00 0.00 0.00 2.01
2029 2079 4.923281 GTCAAGAATTTTGCTGCCGTTTAT 59.077 37.500 0.00 0.00 0.00 1.40
2031 2081 6.584563 GTCAAGAATTTTGCTGCCGTTTATTA 59.415 34.615 0.00 0.00 0.00 0.98
2032 2082 7.275560 GTCAAGAATTTTGCTGCCGTTTATTAT 59.724 33.333 0.00 0.00 0.00 1.28
2033 2083 8.462811 TCAAGAATTTTGCTGCCGTTTATTATA 58.537 29.630 0.00 0.00 0.00 0.98
2034 2084 8.531530 CAAGAATTTTGCTGCCGTTTATTATAC 58.468 33.333 0.00 0.00 0.00 1.47
2035 2085 7.996385 AGAATTTTGCTGCCGTTTATTATACT 58.004 30.769 0.00 0.00 0.00 2.12
2036 2086 9.116067 AGAATTTTGCTGCCGTTTATTATACTA 57.884 29.630 0.00 0.00 0.00 1.82
2037 2087 9.166126 GAATTTTGCTGCCGTTTATTATACTAC 57.834 33.333 0.00 0.00 0.00 2.73
2038 2088 7.852971 TTTTGCTGCCGTTTATTATACTACT 57.147 32.000 0.00 0.00 0.00 2.57
2039 2089 7.473027 TTTGCTGCCGTTTATTATACTACTC 57.527 36.000 0.00 0.00 0.00 2.59
2042 2092 5.568296 GCTGCCGTTTATTATACTACTCGAG 59.432 44.000 11.84 11.84 0.00 4.04
2046 2096 7.041167 TGCCGTTTATTATACTACTCGAGCTTA 60.041 37.037 13.61 1.20 0.00 3.09
2058 2108 8.314143 ACTACTCGAGCTTATAGACTTATGAC 57.686 38.462 13.61 0.00 0.00 3.06
2062 2112 7.445707 ACTCGAGCTTATAGACTTATGACATGA 59.554 37.037 13.61 0.00 0.00 3.07
2063 2113 8.341892 TCGAGCTTATAGACTTATGACATGAT 57.658 34.615 0.00 0.00 0.00 2.45
2064 2114 8.239998 TCGAGCTTATAGACTTATGACATGATG 58.760 37.037 0.00 0.00 0.00 3.07
2065 2115 7.009083 CGAGCTTATAGACTTATGACATGATGC 59.991 40.741 0.00 0.00 0.00 3.91
2110 2164 7.503521 TTTAATGCACAGTTTCATACTCACA 57.496 32.000 0.00 0.00 33.85 3.58
2112 2166 5.556355 ATGCACAGTTTCATACTCACATG 57.444 39.130 0.00 0.00 33.85 3.21
2117 2171 5.928264 CACAGTTTCATACTCACATGACTGA 59.072 40.000 0.00 0.00 35.69 3.41
2121 2175 9.154847 CAGTTTCATACTCACATGACTGATTTA 57.845 33.333 0.00 0.00 34.80 1.40
2171 2225 0.750850 TATACGCCCAAGAGCCTGAC 59.249 55.000 0.00 0.00 0.00 3.51
2187 2241 3.821033 GCCTGACTGTTTTGGTCAAGTAT 59.179 43.478 0.00 0.00 42.15 2.12
2237 2291 1.271379 GCCTGGTTCAGTGAAGCCTAA 60.271 52.381 27.48 11.95 39.02 2.69
2243 2297 4.263462 TGGTTCAGTGAAGCCTAACATGAT 60.263 41.667 27.48 0.00 39.02 2.45
2346 2400 4.083324 CGCAGGATTACAGAAAAAGAAGCA 60.083 41.667 0.00 0.00 0.00 3.91
2433 2487 1.217057 ATCCCATCACCAGGGCAACT 61.217 55.000 0.00 0.00 46.36 3.16
2435 2489 2.345760 CCATCACCAGGGCAACTGC 61.346 63.158 2.35 0.00 46.14 4.40
2481 2535 4.021925 GGACGCCCTTCCACTGCT 62.022 66.667 0.00 0.00 35.49 4.24
2639 2693 1.483004 GCCCTCTACAGGAGAAAGACC 59.517 57.143 0.00 0.00 43.65 3.85
2682 2736 1.203523 AGAACTCCTAGCAAGACAGCG 59.796 52.381 0.00 0.00 40.15 5.18
2684 2738 1.520342 CTCCTAGCAAGACAGCGGC 60.520 63.158 0.00 0.00 40.15 6.53
2712 2766 2.666272 TGGCACATCCAAAGGTTACA 57.334 45.000 0.00 0.00 43.21 2.41
2713 2767 3.168035 TGGCACATCCAAAGGTTACAT 57.832 42.857 0.00 0.00 43.21 2.29
2715 2769 2.097466 GGCACATCCAAAGGTTACATCG 59.903 50.000 0.00 0.00 34.01 3.84
2742 2796 4.194640 CTGTGGTATGTTCCATCCTCTTG 58.805 47.826 0.00 0.00 39.81 3.02
2753 2807 3.907474 TCCATCCTCTTGTCTTACCACAA 59.093 43.478 0.00 0.00 34.99 3.33
2837 2898 4.611807 CGCTTATGTTTTACGTTGGAAGCA 60.612 41.667 0.00 0.00 38.32 3.91
2856 2917 6.939163 GGAAGCATAATGGTGTTAGATCTCAT 59.061 38.462 0.00 0.00 0.00 2.90
2867 2928 6.283694 GTGTTAGATCTCATATGGCTTGTCA 58.716 40.000 0.00 0.00 0.00 3.58
2946 3007 1.793414 AGCCAGAGCCAAAAAGGTTT 58.207 45.000 0.00 0.00 41.25 3.27
2985 3046 3.935203 GACGCATTCTCTGAAGATTTGGA 59.065 43.478 0.00 0.00 0.00 3.53
3007 3068 7.786030 TGGATTTGTCTTGTGGTTTTAATTCA 58.214 30.769 0.00 0.00 0.00 2.57
3029 3090 1.144969 TGCTTTTTACTGCCTCGACG 58.855 50.000 0.00 0.00 0.00 5.12
3071 3132 3.606777 CGAAAGATGCTTCAACATTGCAG 59.393 43.478 2.07 0.00 40.18 4.41
3145 3206 9.995003 ACAAAAATCAAGGTGCAAATCTTAATA 57.005 25.926 0.00 0.00 0.00 0.98
3153 3214 9.853555 CAAGGTGCAAATCTTAATATTGTTACA 57.146 29.630 0.00 0.00 0.00 2.41
3209 3272 7.078228 CCTATTTTCCTGACAAAAACTTCTCG 58.922 38.462 0.00 0.00 0.00 4.04
3326 3389 7.333423 AGCTGCACAAAAGAACGTATAATAGAA 59.667 33.333 1.02 0.00 0.00 2.10
3327 3390 8.122952 GCTGCACAAAAGAACGTATAATAGAAT 58.877 33.333 0.00 0.00 0.00 2.40
3349 3415 6.737720 ATCTCTCCTAGATTGTGCATGTTA 57.262 37.500 0.00 0.00 42.62 2.41
3350 3416 6.544928 TCTCTCCTAGATTGTGCATGTTAA 57.455 37.500 0.00 0.00 0.00 2.01
3394 3460 6.774354 AAACTTGTTCATGATCAATGTTGC 57.226 33.333 21.68 0.00 37.56 4.17
3396 3462 5.466819 ACTTGTTCATGATCAATGTTGCTG 58.533 37.500 17.37 8.35 37.56 4.41
3400 3466 4.729227 TCATGATCAATGTTGCTGCATT 57.271 36.364 1.84 0.00 39.42 3.56
3402 3468 4.401202 TCATGATCAATGTTGCTGCATTCT 59.599 37.500 1.84 0.00 37.00 2.40
3407 3473 3.018856 CAATGTTGCTGCATTCTCCCTA 58.981 45.455 1.84 0.00 37.00 3.53
3412 3478 3.439857 TGCTGCATTCTCCCTAAAAGT 57.560 42.857 0.00 0.00 0.00 2.66
3578 3758 4.278170 CCAGTTGGCACATAAAAACAGAGA 59.722 41.667 0.00 0.00 39.30 3.10
3581 3761 7.309133 CCAGTTGGCACATAAAAACAGAGAATA 60.309 37.037 0.00 0.00 39.30 1.75
3582 3762 8.246180 CAGTTGGCACATAAAAACAGAGAATAT 58.754 33.333 0.00 0.00 39.30 1.28
3628 3821 0.179084 ACACGGTCACACCTGAACTG 60.179 55.000 0.00 0.00 35.66 3.16
3642 3835 3.868077 CCTGAACTGTGCATAGTCTAAGC 59.132 47.826 17.08 5.23 0.00 3.09
3752 3947 8.635765 TCTGGGGATAATTATTACTGAAATGC 57.364 34.615 0.00 0.00 0.00 3.56
3790 3985 6.152831 ACTGGTCTTAGCAATTAAAATGGACC 59.847 38.462 0.00 0.00 40.49 4.46
3854 4049 1.958205 GGGCAATCTCGAGCATCCG 60.958 63.158 7.81 0.00 0.00 4.18
3990 4185 9.511272 CACAATCCTGAGATATCCATTTATTCA 57.489 33.333 0.00 0.00 30.42 2.57
4018 4216 5.375417 TGATGTGCATCTTTTTACCTGTG 57.625 39.130 12.64 0.00 38.60 3.66
4023 4221 5.048083 TGTGCATCTTTTTACCTGTGGAATC 60.048 40.000 0.00 0.00 0.00 2.52
4026 4224 5.127682 GCATCTTTTTACCTGTGGAATCCAT 59.872 40.000 4.81 0.00 35.28 3.41
4151 4349 3.486383 TGGTGGAAGAAAGCCAAAGTAG 58.514 45.455 0.00 0.00 37.12 2.57
4173 4371 3.499048 GCTGCTCATCATGAACACTTTG 58.501 45.455 0.00 0.00 0.00 2.77
4210 4411 6.258727 GGTGTTATACTCATCATGAACACTGG 59.741 42.308 15.83 3.21 43.80 4.00
4254 4455 4.074970 CAAGCTACTCAAACACCATCCTT 58.925 43.478 0.00 0.00 0.00 3.36
4314 4518 1.675310 CAATGCAGGGCCTCGACAA 60.675 57.895 0.95 0.00 0.00 3.18
4350 4554 4.451891 TGCAAGGGGAGCATATATTCAA 57.548 40.909 0.00 0.00 37.02 2.69
4351 4555 4.401022 TGCAAGGGGAGCATATATTCAAG 58.599 43.478 0.00 0.00 37.02 3.02
4352 4556 3.192212 GCAAGGGGAGCATATATTCAAGC 59.808 47.826 0.00 0.00 0.00 4.01
4353 4557 4.660168 CAAGGGGAGCATATATTCAAGCT 58.340 43.478 0.00 0.00 40.60 3.74
4381 4585 3.728845 CCTACATAAACGGTGGATCTGG 58.271 50.000 0.00 0.00 0.00 3.86
4383 4587 2.193127 ACATAAACGGTGGATCTGGGA 58.807 47.619 0.00 0.00 0.00 4.37
4447 4651 4.223964 GCGCGCTGTCCGATTTCC 62.224 66.667 26.67 0.00 40.02 3.13
4460 4664 2.787680 CCGATTTCCTCGTACGATGTTC 59.212 50.000 19.87 12.94 46.18 3.18
4483 4687 4.240888 CTGCGTATCGATCATTTCCATCT 58.759 43.478 0.00 0.00 0.00 2.90
4484 4688 3.989817 TGCGTATCGATCATTTCCATCTG 59.010 43.478 0.00 0.00 0.00 2.90
4558 4762 9.723447 CGTACATGTCTCATAAGTCATATATCC 57.277 37.037 0.00 0.00 31.28 2.59
4563 4773 8.127150 TGTCTCATAAGTCATATATCCACCAG 57.873 38.462 0.00 0.00 0.00 4.00
4698 4945 7.172190 AGCCTAAAGGTCGTTAAAGTAAGAAAC 59.828 37.037 0.00 0.00 37.57 2.78
4766 5020 3.621268 TGAAGTCGTATGTAGGCATTTGC 59.379 43.478 0.00 0.00 36.58 3.68
4798 5059 5.684550 TGCATGCATTAGTTCATGAGATC 57.315 39.130 18.46 0.00 41.82 2.75
4812 5099 2.795329 TGAGATCTTGAAAAGGGCCAC 58.205 47.619 6.18 0.00 46.24 5.01
4819 5106 0.776810 TGAAAAGGGCCACTGGATCA 59.223 50.000 6.18 0.00 0.00 2.92
4827 5114 0.753262 GCCACTGGATCATAGGACGT 59.247 55.000 0.00 0.00 0.00 4.34
4832 5119 1.683385 CTGGATCATAGGACGTGCTCA 59.317 52.381 14.74 3.00 0.00 4.26
4833 5120 1.683385 TGGATCATAGGACGTGCTCAG 59.317 52.381 14.74 7.65 0.00 3.35
4834 5121 1.683917 GGATCATAGGACGTGCTCAGT 59.316 52.381 14.74 0.00 0.00 3.41
4835 5122 2.544694 GGATCATAGGACGTGCTCAGTG 60.545 54.545 14.74 11.54 0.00 3.66
4836 5123 1.545841 TCATAGGACGTGCTCAGTGT 58.454 50.000 14.74 0.00 0.00 3.55
4837 5124 1.893137 TCATAGGACGTGCTCAGTGTT 59.107 47.619 14.74 0.00 0.00 3.32
4838 5125 2.094700 TCATAGGACGTGCTCAGTGTTC 60.095 50.000 14.74 0.00 0.00 3.18
4843 5130 2.286418 GGACGTGCTCAGTGTTCTTTTG 60.286 50.000 0.00 0.00 0.00 2.44
4844 5131 1.670811 ACGTGCTCAGTGTTCTTTTGG 59.329 47.619 0.00 0.00 0.00 3.28
4850 5137 1.021202 CAGTGTTCTTTTGGTCGCCA 58.979 50.000 0.00 0.00 0.00 5.69
4879 5166 0.965363 GTACGTACGAGGTTGGGGGA 60.965 60.000 24.41 0.00 0.00 4.81
4880 5167 0.680921 TACGTACGAGGTTGGGGGAG 60.681 60.000 24.41 0.00 0.00 4.30
4892 5197 4.489771 GGGGAGGGTGCGATGGTG 62.490 72.222 0.00 0.00 0.00 4.17
4900 5205 3.404438 TGCGATGGTGGTACCCCC 61.404 66.667 10.07 8.21 37.50 5.40
4901 5206 3.087906 GCGATGGTGGTACCCCCT 61.088 66.667 15.07 5.98 37.50 4.79
4902 5207 2.908015 CGATGGTGGTACCCCCTG 59.092 66.667 15.07 0.93 37.50 4.45
4903 5208 2.595655 GATGGTGGTACCCCCTGC 59.404 66.667 15.07 2.79 37.50 4.85
4904 5209 3.021263 ATGGTGGTACCCCCTGCC 61.021 66.667 15.07 7.20 37.50 4.85
4905 5210 3.901005 ATGGTGGTACCCCCTGCCA 62.901 63.158 15.07 12.29 41.12 4.92
4906 5211 3.728373 GGTGGTACCCCCTGCCAG 61.728 72.222 10.07 0.00 34.84 4.85
4910 5215 4.778143 GTACCCCCTGCCAGTGCG 62.778 72.222 0.00 0.00 41.78 5.34
4939 5244 1.412343 GCCAGAGTTGCAAAGGGAAAA 59.588 47.619 0.00 0.00 0.00 2.29
4973 5278 3.403038 CATCCATCATTACCCTTCGACC 58.597 50.000 0.00 0.00 0.00 4.79
4983 5288 2.328099 CCTTCGACCACAAGCCTGC 61.328 63.158 0.00 0.00 0.00 4.85
4985 5290 3.158537 TTCGACCACAAGCCTGCGA 62.159 57.895 0.00 0.00 0.00 5.10
4990 5295 2.252260 CACAAGCCTGCGAAACGG 59.748 61.111 0.00 0.00 0.00 4.44
4996 5301 3.486263 CCTGCGAAACGGGTGATC 58.514 61.111 0.00 0.00 40.35 2.92
4997 5302 1.079127 CCTGCGAAACGGGTGATCT 60.079 57.895 0.00 0.00 40.35 2.75
4998 5303 0.673644 CCTGCGAAACGGGTGATCTT 60.674 55.000 0.00 0.00 40.35 2.40
4999 5304 0.721718 CTGCGAAACGGGTGATCTTC 59.278 55.000 0.00 0.00 0.00 2.87
5000 5305 0.320374 TGCGAAACGGGTGATCTTCT 59.680 50.000 0.00 0.00 0.00 2.85
5001 5306 1.000145 GCGAAACGGGTGATCTTCTC 59.000 55.000 0.00 0.00 0.00 2.87
5002 5307 1.671850 GCGAAACGGGTGATCTTCTCA 60.672 52.381 0.00 0.00 0.00 3.27
5012 5317 3.654414 GTGATCTTCTCACGTCTTTGGT 58.346 45.455 0.00 0.00 44.58 3.67
5013 5318 4.058817 GTGATCTTCTCACGTCTTTGGTT 58.941 43.478 0.00 0.00 44.58 3.67
5014 5319 4.058124 TGATCTTCTCACGTCTTTGGTTG 58.942 43.478 0.00 0.00 0.00 3.77
5015 5320 2.210116 TCTTCTCACGTCTTTGGTTGC 58.790 47.619 0.00 0.00 0.00 4.17
5016 5321 1.264288 CTTCTCACGTCTTTGGTTGCC 59.736 52.381 0.00 0.00 0.00 4.52
5017 5322 0.468226 TCTCACGTCTTTGGTTGCCT 59.532 50.000 0.00 0.00 0.00 4.75
5018 5323 0.588252 CTCACGTCTTTGGTTGCCTG 59.412 55.000 0.00 0.00 0.00 4.85
5019 5324 1.008538 CACGTCTTTGGTTGCCTGC 60.009 57.895 0.00 0.00 0.00 4.85
5020 5325 1.453015 ACGTCTTTGGTTGCCTGCA 60.453 52.632 0.00 0.00 0.00 4.41
5021 5326 0.823356 ACGTCTTTGGTTGCCTGCAT 60.823 50.000 0.00 0.00 0.00 3.96
5022 5327 0.387622 CGTCTTTGGTTGCCTGCATG 60.388 55.000 0.00 0.00 0.00 4.06
5023 5328 0.961019 GTCTTTGGTTGCCTGCATGA 59.039 50.000 0.00 0.00 0.00 3.07
5024 5329 1.068055 GTCTTTGGTTGCCTGCATGAG 60.068 52.381 0.00 0.00 0.00 2.90
5025 5330 0.245539 CTTTGGTTGCCTGCATGAGG 59.754 55.000 0.00 1.51 46.13 3.86
5046 5351 4.373116 GGCCTGACTCACGCGGAA 62.373 66.667 12.47 0.00 0.00 4.30
5047 5352 3.112709 GCCTGACTCACGCGGAAC 61.113 66.667 12.47 3.13 0.00 3.62
5061 5366 3.428282 GAACGCAAACGGGCCGAT 61.428 61.111 35.78 20.37 46.04 4.18
5062 5367 2.973316 GAACGCAAACGGGCCGATT 61.973 57.895 35.78 25.85 46.04 3.34
5063 5368 3.262142 AACGCAAACGGGCCGATTG 62.262 57.895 35.60 35.60 46.04 2.67
5064 5369 4.474846 CGCAAACGGGCCGATTGG 62.475 66.667 38.27 27.76 39.40 3.16
5065 5370 3.370231 GCAAACGGGCCGATTGGT 61.370 61.111 38.27 15.16 39.40 3.67
5066 5371 2.926420 GCAAACGGGCCGATTGGTT 61.926 57.895 38.27 19.97 39.40 3.67
5067 5372 1.080839 CAAACGGGCCGATTGGTTG 60.081 57.895 33.39 22.56 36.32 3.77
5068 5373 2.926420 AAACGGGCCGATTGGTTGC 61.926 57.895 35.78 0.00 37.67 4.17
5071 5376 3.451894 GGGCCGATTGGTTGCCTG 61.452 66.667 0.00 0.00 44.71 4.85
5072 5377 4.133796 GGCCGATTGGTTGCCTGC 62.134 66.667 0.00 0.00 42.01 4.85
5073 5378 3.064324 GCCGATTGGTTGCCTGCT 61.064 61.111 0.00 0.00 37.67 4.24
5074 5379 2.639327 GCCGATTGGTTGCCTGCTT 61.639 57.895 0.00 0.00 37.67 3.91
5075 5380 1.966762 CCGATTGGTTGCCTGCTTT 59.033 52.632 0.00 0.00 0.00 3.51
5076 5381 0.318120 CCGATTGGTTGCCTGCTTTT 59.682 50.000 0.00 0.00 0.00 2.27
5077 5382 1.543802 CCGATTGGTTGCCTGCTTTTA 59.456 47.619 0.00 0.00 0.00 1.52
5078 5383 2.595386 CGATTGGTTGCCTGCTTTTAC 58.405 47.619 0.00 0.00 0.00 2.01
5079 5384 2.228822 CGATTGGTTGCCTGCTTTTACT 59.771 45.455 0.00 0.00 0.00 2.24
5080 5385 3.578688 GATTGGTTGCCTGCTTTTACTG 58.421 45.455 0.00 0.00 0.00 2.74
5081 5386 2.065899 TGGTTGCCTGCTTTTACTGT 57.934 45.000 0.00 0.00 0.00 3.55
5082 5387 2.383855 TGGTTGCCTGCTTTTACTGTT 58.616 42.857 0.00 0.00 0.00 3.16
5083 5388 2.763448 TGGTTGCCTGCTTTTACTGTTT 59.237 40.909 0.00 0.00 0.00 2.83
5084 5389 3.123050 GGTTGCCTGCTTTTACTGTTTG 58.877 45.455 0.00 0.00 0.00 2.93
5085 5390 3.123050 GTTGCCTGCTTTTACTGTTTGG 58.877 45.455 0.00 0.00 0.00 3.28
5086 5391 1.068434 TGCCTGCTTTTACTGTTTGGC 59.932 47.619 0.00 0.00 39.53 4.52
5087 5392 1.605457 GCCTGCTTTTACTGTTTGGCC 60.605 52.381 0.00 0.00 33.66 5.36
5088 5393 1.000843 CCTGCTTTTACTGTTTGGCCC 59.999 52.381 0.00 0.00 0.00 5.80
5089 5394 0.671251 TGCTTTTACTGTTTGGCCCG 59.329 50.000 0.00 0.00 0.00 6.13
5090 5395 0.666274 GCTTTTACTGTTTGGCCCGC 60.666 55.000 0.00 0.00 0.00 6.13
5091 5396 0.671251 CTTTTACTGTTTGGCCCGCA 59.329 50.000 0.00 0.00 0.00 5.69
5092 5397 1.272212 CTTTTACTGTTTGGCCCGCAT 59.728 47.619 0.00 0.00 0.00 4.73
5093 5398 0.600557 TTTACTGTTTGGCCCGCATG 59.399 50.000 0.00 0.00 0.00 4.06
5094 5399 1.247419 TTACTGTTTGGCCCGCATGG 61.247 55.000 0.00 0.00 37.09 3.66
5104 5409 3.055719 CCGCATGGCACGAACCTT 61.056 61.111 0.00 0.00 0.00 3.50
5105 5410 1.743623 CCGCATGGCACGAACCTTA 60.744 57.895 0.00 0.00 0.00 2.69
5106 5411 1.302383 CCGCATGGCACGAACCTTAA 61.302 55.000 0.00 0.00 0.00 1.85
5107 5412 0.519519 CGCATGGCACGAACCTTAAA 59.480 50.000 0.00 0.00 0.00 1.52
5108 5413 1.465689 CGCATGGCACGAACCTTAAAG 60.466 52.381 0.00 0.00 0.00 1.85
5109 5414 1.732405 GCATGGCACGAACCTTAAAGC 60.732 52.381 0.00 0.00 0.00 3.51
5110 5415 0.802494 ATGGCACGAACCTTAAAGCG 59.198 50.000 0.00 0.00 0.00 4.68
5111 5416 1.154282 GGCACGAACCTTAAAGCGC 60.154 57.895 0.00 0.00 0.00 5.92
5112 5417 1.574702 GGCACGAACCTTAAAGCGCT 61.575 55.000 2.64 2.64 0.00 5.92
5113 5418 0.179222 GCACGAACCTTAAAGCGCTC 60.179 55.000 12.06 0.00 0.00 5.03
5114 5419 0.442699 CACGAACCTTAAAGCGCTCC 59.557 55.000 12.06 0.00 0.00 4.70
5115 5420 0.320697 ACGAACCTTAAAGCGCTCCT 59.679 50.000 12.06 3.27 0.00 3.69
5116 5421 0.721718 CGAACCTTAAAGCGCTCCTG 59.278 55.000 12.06 1.07 0.00 3.86
5117 5422 1.087501 GAACCTTAAAGCGCTCCTGG 58.912 55.000 12.06 13.61 0.00 4.45
5118 5423 0.322546 AACCTTAAAGCGCTCCTGGG 60.323 55.000 12.06 13.93 0.00 4.45
5134 5439 3.011517 GGCCTGGCTCCCTGAGAA 61.012 66.667 19.68 0.00 0.00 2.87
5135 5440 2.381941 GGCCTGGCTCCCTGAGAAT 61.382 63.158 19.68 0.00 0.00 2.40
5136 5441 1.153005 GCCTGGCTCCCTGAGAATG 60.153 63.158 12.43 0.00 0.00 2.67
5137 5442 1.153005 CCTGGCTCCCTGAGAATGC 60.153 63.158 0.00 0.00 0.00 3.56
5138 5443 1.633915 CCTGGCTCCCTGAGAATGCT 61.634 60.000 0.00 0.00 0.00 3.79
5139 5444 0.255318 CTGGCTCCCTGAGAATGCTT 59.745 55.000 0.00 0.00 0.00 3.91
5140 5445 0.034767 TGGCTCCCTGAGAATGCTTG 60.035 55.000 0.00 0.00 0.00 4.01
5141 5446 0.254178 GGCTCCCTGAGAATGCTTGA 59.746 55.000 0.00 0.00 0.00 3.02
5142 5447 1.340405 GGCTCCCTGAGAATGCTTGAA 60.340 52.381 0.00 0.00 0.00 2.69
5143 5448 2.652590 GCTCCCTGAGAATGCTTGAAT 58.347 47.619 0.00 0.00 0.00 2.57
5144 5449 3.022406 GCTCCCTGAGAATGCTTGAATT 58.978 45.455 0.00 0.00 0.00 2.17
5145 5450 3.181489 GCTCCCTGAGAATGCTTGAATTG 60.181 47.826 0.00 0.00 0.00 2.32
5146 5451 3.359033 TCCCTGAGAATGCTTGAATTGG 58.641 45.455 0.00 0.00 0.00 3.16
5147 5452 2.429610 CCCTGAGAATGCTTGAATTGGG 59.570 50.000 0.00 0.00 0.00 4.12
5148 5453 2.159142 CCTGAGAATGCTTGAATTGGGC 60.159 50.000 0.00 0.00 0.00 5.36
5149 5454 1.826720 TGAGAATGCTTGAATTGGGCC 59.173 47.619 0.00 0.00 0.00 5.80
5150 5455 1.826720 GAGAATGCTTGAATTGGGCCA 59.173 47.619 0.00 0.00 0.00 5.36
5151 5456 1.829222 AGAATGCTTGAATTGGGCCAG 59.171 47.619 6.23 0.00 0.00 4.85
5152 5457 0.906775 AATGCTTGAATTGGGCCAGG 59.093 50.000 6.23 0.00 0.00 4.45
5153 5458 1.619807 ATGCTTGAATTGGGCCAGGC 61.620 55.000 6.23 1.26 36.16 4.85
5216 5521 3.843240 GCTCGAGAAGCCGCGTTG 61.843 66.667 18.75 0.00 45.92 4.10
5217 5522 3.843240 CTCGAGAAGCCGCGTTGC 61.843 66.667 6.58 1.35 36.92 4.17
5218 5523 4.357947 TCGAGAAGCCGCGTTGCT 62.358 61.111 4.92 4.34 45.43 3.91
5224 5529 2.280797 AGCCGCGTTGCTTCTTGA 60.281 55.556 4.92 0.00 38.85 3.02
5225 5530 1.891919 AGCCGCGTTGCTTCTTGAA 60.892 52.632 4.92 0.00 38.85 2.69
5226 5531 1.441016 GCCGCGTTGCTTCTTGAAG 60.441 57.895 4.92 6.04 0.00 3.02
5227 5532 1.441016 CCGCGTTGCTTCTTGAAGC 60.441 57.895 23.73 23.73 45.67 3.86
5233 5538 2.476499 GCTTCTTGAAGCGCCGAC 59.524 61.111 17.85 0.00 35.93 4.79
5234 5539 2.317609 GCTTCTTGAAGCGCCGACA 61.318 57.895 17.85 0.00 35.93 4.35
5235 5540 1.784062 CTTCTTGAAGCGCCGACAG 59.216 57.895 2.29 0.00 0.00 3.51
5236 5541 0.946221 CTTCTTGAAGCGCCGACAGT 60.946 55.000 2.29 0.00 0.00 3.55
5237 5542 0.531974 TTCTTGAAGCGCCGACAGTT 60.532 50.000 2.29 0.00 0.00 3.16
5238 5543 0.315886 TCTTGAAGCGCCGACAGTTA 59.684 50.000 2.29 0.00 0.00 2.24
5239 5544 1.067142 TCTTGAAGCGCCGACAGTTAT 60.067 47.619 2.29 0.00 0.00 1.89
5240 5545 1.732259 CTTGAAGCGCCGACAGTTATT 59.268 47.619 2.29 0.00 0.00 1.40
5241 5546 2.658373 TGAAGCGCCGACAGTTATTA 57.342 45.000 2.29 0.00 0.00 0.98
5242 5547 2.536365 TGAAGCGCCGACAGTTATTAG 58.464 47.619 2.29 0.00 0.00 1.73
5243 5548 1.258197 GAAGCGCCGACAGTTATTAGC 59.742 52.381 2.29 0.00 0.00 3.09
5244 5549 0.529992 AGCGCCGACAGTTATTAGCC 60.530 55.000 2.29 0.00 0.00 3.93
5245 5550 0.529992 GCGCCGACAGTTATTAGCCT 60.530 55.000 0.00 0.00 0.00 4.58
5246 5551 1.488527 CGCCGACAGTTATTAGCCTC 58.511 55.000 0.00 0.00 0.00 4.70
5247 5552 1.202371 CGCCGACAGTTATTAGCCTCA 60.202 52.381 0.00 0.00 0.00 3.86
5248 5553 2.202566 GCCGACAGTTATTAGCCTCAC 58.797 52.381 0.00 0.00 0.00 3.51
5249 5554 2.822764 CCGACAGTTATTAGCCTCACC 58.177 52.381 0.00 0.00 0.00 4.02
5250 5555 2.460918 CGACAGTTATTAGCCTCACCG 58.539 52.381 0.00 0.00 0.00 4.94
5251 5556 2.202566 GACAGTTATTAGCCTCACCGC 58.797 52.381 0.00 0.00 0.00 5.68
5252 5557 1.831736 ACAGTTATTAGCCTCACCGCT 59.168 47.619 0.00 0.00 43.09 5.52
5253 5558 2.159085 ACAGTTATTAGCCTCACCGCTC 60.159 50.000 0.00 0.00 40.39 5.03
5254 5559 1.413077 AGTTATTAGCCTCACCGCTCC 59.587 52.381 0.00 0.00 40.39 4.70
5255 5560 0.756903 TTATTAGCCTCACCGCTCCC 59.243 55.000 0.00 0.00 40.39 4.30
5256 5561 0.105658 TATTAGCCTCACCGCTCCCT 60.106 55.000 0.00 0.00 40.39 4.20
5257 5562 1.403687 ATTAGCCTCACCGCTCCCTC 61.404 60.000 0.00 0.00 40.39 4.30
5258 5563 2.516048 TTAGCCTCACCGCTCCCTCT 62.516 60.000 0.00 0.00 40.39 3.69
5259 5564 2.912987 TAGCCTCACCGCTCCCTCTC 62.913 65.000 0.00 0.00 40.39 3.20
5260 5565 3.151022 CCTCACCGCTCCCTCTCC 61.151 72.222 0.00 0.00 0.00 3.71
5261 5566 3.151022 CTCACCGCTCCCTCTCCC 61.151 72.222 0.00 0.00 0.00 4.30
5262 5567 4.779733 TCACCGCTCCCTCTCCCC 62.780 72.222 0.00 0.00 0.00 4.81
5265 5570 4.787280 CCGCTCCCTCTCCCCACT 62.787 72.222 0.00 0.00 0.00 4.00
5266 5571 3.151022 CGCTCCCTCTCCCCACTC 61.151 72.222 0.00 0.00 0.00 3.51
5267 5572 2.366570 GCTCCCTCTCCCCACTCT 59.633 66.667 0.00 0.00 0.00 3.24
5268 5573 1.760480 GCTCCCTCTCCCCACTCTC 60.760 68.421 0.00 0.00 0.00 3.20
5269 5574 1.075600 CTCCCTCTCCCCACTCTCC 60.076 68.421 0.00 0.00 0.00 3.71
5270 5575 2.041405 CCCTCTCCCCACTCTCCC 60.041 72.222 0.00 0.00 0.00 4.30
5271 5576 2.041405 CCTCTCCCCACTCTCCCC 60.041 72.222 0.00 0.00 0.00 4.81
5272 5577 2.641746 CCTCTCCCCACTCTCCCCT 61.642 68.421 0.00 0.00 0.00 4.79
5273 5578 1.382420 CTCTCCCCACTCTCCCCTG 60.382 68.421 0.00 0.00 0.00 4.45
5274 5579 2.174876 CTCTCCCCACTCTCCCCTGT 62.175 65.000 0.00 0.00 0.00 4.00
5275 5580 1.229658 CTCCCCACTCTCCCCTGTT 60.230 63.158 0.00 0.00 0.00 3.16
5276 5581 1.538876 TCCCCACTCTCCCCTGTTG 60.539 63.158 0.00 0.00 0.00 3.33
5277 5582 1.847968 CCCCACTCTCCCCTGTTGT 60.848 63.158 0.00 0.00 0.00 3.32
5278 5583 1.679898 CCCACTCTCCCCTGTTGTC 59.320 63.158 0.00 0.00 0.00 3.18
5279 5584 1.679898 CCACTCTCCCCTGTTGTCC 59.320 63.158 0.00 0.00 0.00 4.02
5280 5585 1.679898 CACTCTCCCCTGTTGTCCC 59.320 63.158 0.00 0.00 0.00 4.46
5281 5586 0.838122 CACTCTCCCCTGTTGTCCCT 60.838 60.000 0.00 0.00 0.00 4.20
5282 5587 0.790993 ACTCTCCCCTGTTGTCCCTA 59.209 55.000 0.00 0.00 0.00 3.53
5283 5588 1.196012 CTCTCCCCTGTTGTCCCTAC 58.804 60.000 0.00 0.00 0.00 3.18
5284 5589 0.790993 TCTCCCCTGTTGTCCCTACT 59.209 55.000 0.00 0.00 0.00 2.57
5285 5590 1.196012 CTCCCCTGTTGTCCCTACTC 58.804 60.000 0.00 0.00 0.00 2.59
5286 5591 0.790993 TCCCCTGTTGTCCCTACTCT 59.209 55.000 0.00 0.00 0.00 3.24
5287 5592 1.196012 CCCCTGTTGTCCCTACTCTC 58.804 60.000 0.00 0.00 0.00 3.20
5288 5593 1.552486 CCCCTGTTGTCCCTACTCTCA 60.552 57.143 0.00 0.00 0.00 3.27
5289 5594 1.550976 CCCTGTTGTCCCTACTCTCAC 59.449 57.143 0.00 0.00 0.00 3.51
5290 5595 1.550976 CCTGTTGTCCCTACTCTCACC 59.449 57.143 0.00 0.00 0.00 4.02
5291 5596 1.202582 CTGTTGTCCCTACTCTCACCG 59.797 57.143 0.00 0.00 0.00 4.94
5292 5597 0.531200 GTTGTCCCTACTCTCACCGG 59.469 60.000 0.00 0.00 0.00 5.28
5293 5598 1.255667 TTGTCCCTACTCTCACCGGC 61.256 60.000 0.00 0.00 0.00 6.13
5294 5599 2.439701 TCCCTACTCTCACCGGCG 60.440 66.667 0.00 0.00 0.00 6.46
5295 5600 3.528370 CCCTACTCTCACCGGCGG 61.528 72.222 27.06 27.06 0.00 6.13
5296 5601 4.208686 CCTACTCTCACCGGCGGC 62.209 72.222 28.71 0.00 0.00 6.53
5297 5602 4.554363 CTACTCTCACCGGCGGCG 62.554 72.222 28.71 26.12 0.00 6.46
5311 5616 4.918201 GGCGGCGGATTGGAGGAG 62.918 72.222 9.78 0.00 0.00 3.69
5312 5617 3.849951 GCGGCGGATTGGAGGAGA 61.850 66.667 9.78 0.00 0.00 3.71
5313 5618 2.419198 CGGCGGATTGGAGGAGAG 59.581 66.667 0.00 0.00 0.00 3.20
5314 5619 2.110006 GGCGGATTGGAGGAGAGC 59.890 66.667 0.00 0.00 0.00 4.09
5315 5620 2.735772 GGCGGATTGGAGGAGAGCA 61.736 63.158 0.00 0.00 0.00 4.26
5316 5621 1.221840 GCGGATTGGAGGAGAGCAA 59.778 57.895 0.00 0.00 0.00 3.91
5317 5622 0.813210 GCGGATTGGAGGAGAGCAAG 60.813 60.000 0.00 0.00 0.00 4.01
5318 5623 0.826715 CGGATTGGAGGAGAGCAAGA 59.173 55.000 0.00 0.00 0.00 3.02
5319 5624 1.208052 CGGATTGGAGGAGAGCAAGAA 59.792 52.381 0.00 0.00 0.00 2.52
5320 5625 2.741228 CGGATTGGAGGAGAGCAAGAAG 60.741 54.545 0.00 0.00 0.00 2.85
5321 5626 2.503356 GGATTGGAGGAGAGCAAGAAGA 59.497 50.000 0.00 0.00 0.00 2.87
5322 5627 3.530535 GATTGGAGGAGAGCAAGAAGAC 58.469 50.000 0.00 0.00 0.00 3.01
5323 5628 1.270907 TGGAGGAGAGCAAGAAGACC 58.729 55.000 0.00 0.00 0.00 3.85
5324 5629 1.270907 GGAGGAGAGCAAGAAGACCA 58.729 55.000 0.00 0.00 0.00 4.02
5325 5630 1.066502 GGAGGAGAGCAAGAAGACCAC 60.067 57.143 0.00 0.00 0.00 4.16
5326 5631 0.980423 AGGAGAGCAAGAAGACCACC 59.020 55.000 0.00 0.00 0.00 4.61
5327 5632 0.390472 GGAGAGCAAGAAGACCACCG 60.390 60.000 0.00 0.00 0.00 4.94
5328 5633 0.390472 GAGAGCAAGAAGACCACCGG 60.390 60.000 0.00 0.00 0.00 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 6.481954 AGAGCACTAAAATTGAACTTACCG 57.518 37.500 0.00 0.00 0.00 4.02
14 15 5.629435 GGGAAAACGAAGAGCACTAAAATTG 59.371 40.000 0.00 0.00 0.00 2.32
24 25 0.320508 ACGAGGGGAAAACGAAGAGC 60.321 55.000 0.00 0.00 0.00 4.09
53 55 9.221775 CCAAAATGCAAATCGACTTATACTAAC 57.778 33.333 0.00 0.00 0.00 2.34
96 102 1.753956 CCGTTTGGCGAGTTGAAAAG 58.246 50.000 0.00 0.00 44.77 2.27
131 137 6.349445 CGGTCTATGTGAACAGTAAAGAGAGT 60.349 42.308 0.00 0.00 31.33 3.24
147 172 1.062002 CGCGCAATTTTCGGTCTATGT 59.938 47.619 8.75 0.00 0.00 2.29
157 182 4.036804 TGCTCCGCGCGCAATTTT 62.037 55.556 32.61 0.00 43.27 1.82
173 198 2.223249 CCCGAAAATAACATCTGCGGTG 60.223 50.000 0.00 0.00 35.80 4.94
213 238 9.226345 GCCAGAGAAAAAGATATTTGAAATACG 57.774 33.333 0.00 0.00 0.00 3.06
236 262 4.241681 GTCCATTAAGCAAATTTTCGCCA 58.758 39.130 0.00 0.00 0.00 5.69
239 265 4.327087 GCCTGTCCATTAAGCAAATTTTCG 59.673 41.667 0.00 0.00 0.00 3.46
241 267 4.565444 GGGCCTGTCCATTAAGCAAATTTT 60.565 41.667 0.84 0.00 36.21 1.82
252 279 1.002134 CAACTCGGGCCTGTCCATT 60.002 57.895 12.43 0.00 36.21 3.16
289 316 7.118496 AGATACGGAAATCTCTTGTGATTCT 57.882 36.000 0.00 0.00 35.82 2.40
326 353 0.034059 CAAGGTGAAGTCGCAGAGGT 59.966 55.000 0.00 0.00 36.95 3.85
334 361 5.066505 CCAAAGCATATACCAAGGTGAAGTC 59.933 44.000 1.07 0.00 0.00 3.01
335 362 4.949856 CCAAAGCATATACCAAGGTGAAGT 59.050 41.667 1.07 0.00 0.00 3.01
336 363 5.066505 GTCCAAAGCATATACCAAGGTGAAG 59.933 44.000 1.07 0.00 0.00 3.02
337 364 4.947388 GTCCAAAGCATATACCAAGGTGAA 59.053 41.667 1.07 0.00 0.00 3.18
338 365 4.227300 AGTCCAAAGCATATACCAAGGTGA 59.773 41.667 1.07 0.00 0.00 4.02
339 366 4.336433 CAGTCCAAAGCATATACCAAGGTG 59.664 45.833 1.07 0.00 0.00 4.00
340 367 4.526970 CAGTCCAAAGCATATACCAAGGT 58.473 43.478 0.00 0.00 0.00 3.50
341 368 3.316308 GCAGTCCAAAGCATATACCAAGG 59.684 47.826 0.00 0.00 0.00 3.61
342 369 3.947196 TGCAGTCCAAAGCATATACCAAG 59.053 43.478 0.00 0.00 35.51 3.61
343 370 3.961849 TGCAGTCCAAAGCATATACCAA 58.038 40.909 0.00 0.00 35.51 3.67
344 371 3.643199 TGCAGTCCAAAGCATATACCA 57.357 42.857 0.00 0.00 35.51 3.25
345 372 3.947834 AGTTGCAGTCCAAAGCATATACC 59.052 43.478 0.00 0.00 40.94 2.73
346 373 4.201950 CCAGTTGCAGTCCAAAGCATATAC 60.202 45.833 0.00 0.00 40.94 1.47
347 374 3.947196 CCAGTTGCAGTCCAAAGCATATA 59.053 43.478 0.00 0.00 40.94 0.86
348 375 2.756760 CCAGTTGCAGTCCAAAGCATAT 59.243 45.455 0.00 0.00 40.94 1.78
349 376 2.161855 CCAGTTGCAGTCCAAAGCATA 58.838 47.619 0.00 0.00 40.94 3.14
350 377 0.963962 CCAGTTGCAGTCCAAAGCAT 59.036 50.000 0.00 0.00 40.94 3.79
351 378 0.395586 ACCAGTTGCAGTCCAAAGCA 60.396 50.000 0.00 0.00 39.32 3.91
352 379 0.746659 AACCAGTTGCAGTCCAAAGC 59.253 50.000 0.00 0.00 34.68 3.51
353 380 2.481795 CCAAACCAGTTGCAGTCCAAAG 60.482 50.000 0.00 0.00 35.74 2.77
354 381 1.480137 CCAAACCAGTTGCAGTCCAAA 59.520 47.619 0.00 0.00 35.74 3.28
355 382 1.110442 CCAAACCAGTTGCAGTCCAA 58.890 50.000 0.00 0.00 35.74 3.53
356 383 0.754957 CCCAAACCAGTTGCAGTCCA 60.755 55.000 0.00 0.00 35.74 4.02
357 384 0.755327 ACCCAAACCAGTTGCAGTCC 60.755 55.000 0.00 0.00 35.74 3.85
358 385 1.880027 CTACCCAAACCAGTTGCAGTC 59.120 52.381 0.00 0.00 35.74 3.51
435 464 0.471617 ATATGGAGGCAGAGGCACAC 59.528 55.000 0.00 0.00 43.71 3.82
436 465 0.471191 CATATGGAGGCAGAGGCACA 59.529 55.000 0.00 0.00 43.71 4.57
440 469 3.307550 CCAGAATCATATGGAGGCAGAGG 60.308 52.174 2.13 0.00 40.54 3.69
465 494 2.481568 CGAGCTGCAGTTGAATTCTTCA 59.518 45.455 16.64 0.00 38.04 3.02
468 497 1.002430 TCCGAGCTGCAGTTGAATTCT 59.998 47.619 16.64 0.97 0.00 2.40
470 499 1.808945 CTTCCGAGCTGCAGTTGAATT 59.191 47.619 16.64 0.00 0.00 2.17
643 675 4.927267 TTCTAAAGAGGCCAGAATCCAA 57.073 40.909 5.01 0.00 0.00 3.53
660 707 8.708742 CGAAAAGACATGTGATGTTACTTTCTA 58.291 33.333 1.15 0.00 45.03 2.10
672 719 1.798223 CGAAGGCGAAAAGACATGTGA 59.202 47.619 1.15 0.00 40.82 3.58
673 720 1.135972 CCGAAGGCGAAAAGACATGTG 60.136 52.381 1.15 0.00 46.14 3.21
696 744 9.166126 GTAAGAACTCAAAACCAAACTTATTCG 57.834 33.333 0.00 0.00 0.00 3.34
700 748 9.233649 TCAAGTAAGAACTCAAAACCAAACTTA 57.766 29.630 0.00 0.00 33.75 2.24
701 749 8.117813 TCAAGTAAGAACTCAAAACCAAACTT 57.882 30.769 0.00 0.00 33.75 2.66
702 750 7.393515 ACTCAAGTAAGAACTCAAAACCAAACT 59.606 33.333 0.00 0.00 33.75 2.66
704 752 7.696992 ACTCAAGTAAGAACTCAAAACCAAA 57.303 32.000 0.00 0.00 33.75 3.28
757 805 1.944032 AACACCGCTAACAAGAACGT 58.056 45.000 0.00 0.00 0.00 3.99
888 936 2.969443 ACATAACTGAAACACGCTGC 57.031 45.000 0.00 0.00 0.00 5.25
1097 1145 7.640852 TGGTATGCATAATTTAAATTACGCGT 58.359 30.769 27.27 27.27 41.48 6.01
1121 1169 4.862574 CAGCATTTCTGGTTGATTCACATG 59.137 41.667 0.00 0.00 39.15 3.21
1200 1248 0.389391 TGAATCTACTAGCTGGCGGC 59.611 55.000 11.19 11.19 42.19 6.53
1203 1253 2.804933 GCAGGTGAATCTACTAGCTGGC 60.805 54.545 0.00 0.00 39.59 4.85
1231 1281 6.459710 CCCTGAGGAAAGTAAGAAAACAACAC 60.460 42.308 0.00 0.00 33.47 3.32
1281 1331 1.865865 CGAAGGATACGGAACCATGG 58.134 55.000 11.19 11.19 46.39 3.66
1506 1556 5.869579 TCTTCTGTTTGGCTAGAATCACTT 58.130 37.500 0.00 0.00 32.92 3.16
1614 1664 1.134367 CATTGCATGCCCTGTTCAGAG 59.866 52.381 16.68 0.00 0.00 3.35
1677 1727 5.047802 GGCTTCTGAAACAAGATTGGATGAA 60.048 40.000 0.00 0.00 0.00 2.57
1735 1785 8.125978 TCTGAATTATCACCAAGAGCATTTTT 57.874 30.769 0.00 0.00 0.00 1.94
1786 1836 0.531090 CCAAGACCGTCGTGACCAAA 60.531 55.000 15.13 0.00 0.00 3.28
1794 1844 2.811317 GCTGCTCCAAGACCGTCG 60.811 66.667 0.00 0.00 0.00 5.12
1797 1847 1.088340 CATGAGCTGCTCCAAGACCG 61.088 60.000 25.61 3.81 0.00 4.79
1801 1851 3.770666 CATTTTCATGAGCTGCTCCAAG 58.229 45.455 25.61 15.39 31.07 3.61
1813 1863 1.829222 AGGAGCCCTTGCATTTTCATG 59.171 47.619 0.00 0.00 41.13 3.07
1845 1895 4.405756 TCTAAGTCTGGGGTCTTTCTCT 57.594 45.455 0.00 0.00 0.00 3.10
1902 1952 3.241530 AGAGGACTGCCCGCAACA 61.242 61.111 0.00 0.00 40.87 3.33
1914 1964 0.684479 CAGATGTCCGGTCCAGAGGA 60.684 60.000 0.00 0.00 0.00 3.71
2008 2058 5.844301 AATAAACGGCAGCAAAATTCTTG 57.156 34.783 0.00 0.00 0.00 3.02
2010 2060 7.996385 AGTATAATAAACGGCAGCAAAATTCT 58.004 30.769 0.00 0.00 0.00 2.40
2011 2061 9.166126 GTAGTATAATAAACGGCAGCAAAATTC 57.834 33.333 0.00 0.00 0.00 2.17
2013 2063 8.446599 AGTAGTATAATAAACGGCAGCAAAAT 57.553 30.769 0.00 0.00 0.00 1.82
2014 2064 7.254185 CGAGTAGTATAATAAACGGCAGCAAAA 60.254 37.037 0.00 0.00 0.00 2.44
2015 2065 6.199531 CGAGTAGTATAATAAACGGCAGCAAA 59.800 38.462 0.00 0.00 0.00 3.68
2016 2066 5.688621 CGAGTAGTATAATAAACGGCAGCAA 59.311 40.000 0.00 0.00 0.00 3.91
2017 2067 5.008911 TCGAGTAGTATAATAAACGGCAGCA 59.991 40.000 0.00 0.00 0.00 4.41
2019 2069 5.568296 GCTCGAGTAGTATAATAAACGGCAG 59.432 44.000 15.13 0.00 0.00 4.85
2020 2070 5.240183 AGCTCGAGTAGTATAATAAACGGCA 59.760 40.000 15.13 0.19 0.00 5.69
2021 2071 5.697826 AGCTCGAGTAGTATAATAAACGGC 58.302 41.667 15.13 0.00 0.00 5.68
2032 2082 9.421806 GTCATAAGTCTATAAGCTCGAGTAGTA 57.578 37.037 15.13 4.38 0.00 1.82
2033 2083 7.932491 TGTCATAAGTCTATAAGCTCGAGTAGT 59.068 37.037 15.13 2.05 0.00 2.73
2034 2084 8.312896 TGTCATAAGTCTATAAGCTCGAGTAG 57.687 38.462 15.13 7.83 0.00 2.57
2035 2085 8.722394 CATGTCATAAGTCTATAAGCTCGAGTA 58.278 37.037 15.13 0.00 0.00 2.59
2036 2086 7.445707 TCATGTCATAAGTCTATAAGCTCGAGT 59.554 37.037 15.13 0.00 0.00 4.18
2037 2087 7.811653 TCATGTCATAAGTCTATAAGCTCGAG 58.188 38.462 8.45 8.45 0.00 4.04
2038 2088 7.745620 TCATGTCATAAGTCTATAAGCTCGA 57.254 36.000 0.00 0.00 0.00 4.04
2039 2089 7.009083 GCATCATGTCATAAGTCTATAAGCTCG 59.991 40.741 0.00 0.00 0.00 5.03
2042 2092 8.545229 AAGCATCATGTCATAAGTCTATAAGC 57.455 34.615 0.00 0.00 0.00 3.09
2058 2108 9.887629 AGAGAGTATCCATAATAAAGCATCATG 57.112 33.333 0.00 0.00 33.66 3.07
2110 2164 4.774124 TGCAGCTAGCTTAAATCAGTCAT 58.226 39.130 16.46 0.00 45.94 3.06
2112 2166 4.813161 TCATGCAGCTAGCTTAAATCAGTC 59.187 41.667 16.46 0.00 45.94 3.51
2171 2225 9.528018 AAATGTGTTAATACTTGACCAAAACAG 57.472 29.630 3.89 0.00 0.00 3.16
2187 2241 9.658799 TGAAATGTTTCAGGAAAAATGTGTTAA 57.341 25.926 4.16 0.00 41.88 2.01
2237 2291 8.375506 TCTTAGTCTTCTGGTTTGTAATCATGT 58.624 33.333 0.00 0.00 0.00 3.21
2243 2297 6.395426 TCGTCTTAGTCTTCTGGTTTGTAA 57.605 37.500 0.00 0.00 0.00 2.41
2314 2368 0.527817 GTAATCCTGCGAGTCCGTGG 60.528 60.000 0.00 0.00 38.24 4.94
2346 2400 0.470456 TGACACCTGTAACCCCGAGT 60.470 55.000 0.00 0.00 0.00 4.18
2435 2489 3.456280 GAGACATCAGCAGGCTTCTTAG 58.544 50.000 0.00 0.00 0.00 2.18
2481 2535 1.070786 GGTGACAGGGCGTCTTTCA 59.929 57.895 0.00 0.00 45.60 2.69
2682 2736 0.171903 GATGTGCCACACTTGATGCC 59.828 55.000 0.00 0.00 35.11 4.40
2684 2738 1.536940 TGGATGTGCCACACTTGATG 58.463 50.000 0.00 0.00 43.33 3.07
2837 2898 8.155620 AGCCATATGAGATCTAACACCATTAT 57.844 34.615 3.65 0.00 0.00 1.28
2856 2917 3.011818 CTGCATGAAGTGACAAGCCATA 58.988 45.455 0.00 0.00 34.26 2.74
2985 3046 9.097257 CAACTGAATTAAAACCACAAGACAAAT 57.903 29.630 0.00 0.00 0.00 2.32
3007 3068 2.548480 GTCGAGGCAGTAAAAAGCAACT 59.452 45.455 0.00 0.00 0.00 3.16
3029 3090 4.876125 TCGATCCTCTGATATTGCTGTTC 58.124 43.478 0.00 0.00 0.00 3.18
3066 3127 3.306780 GGCCTAGTTAAGTGACTCTGCAA 60.307 47.826 0.00 0.00 31.55 4.08
3071 3132 2.233922 TGCTGGCCTAGTTAAGTGACTC 59.766 50.000 3.32 0.00 0.00 3.36
3153 3214 6.183361 ACCAGCCTTCATCATAATACATTCCT 60.183 38.462 0.00 0.00 0.00 3.36
3160 3221 5.827797 GGTCAAACCAGCCTTCATCATAATA 59.172 40.000 0.00 0.00 38.42 0.98
3161 3222 4.646492 GGTCAAACCAGCCTTCATCATAAT 59.354 41.667 0.00 0.00 38.42 1.28
3162 3223 4.016444 GGTCAAACCAGCCTTCATCATAA 58.984 43.478 0.00 0.00 38.42 1.90
3166 3227 1.177401 GGGTCAAACCAGCCTTCATC 58.823 55.000 0.00 0.00 41.02 2.92
3209 3272 3.381949 CAGGTTTACCGAGCTACATAGC 58.618 50.000 2.50 2.50 44.72 2.97
3278 3341 5.705905 GCTTACCTCTTTCTTTTTCAGCCTA 59.294 40.000 0.00 0.00 0.00 3.93
3327 3390 6.381133 TCTTAACATGCACAATCTAGGAGAGA 59.619 38.462 0.00 0.00 39.01 3.10
3346 3412 4.962155 AGCCAGGCTATGTGTATCTTAAC 58.038 43.478 14.18 0.00 36.99 2.01
3349 3415 3.041211 TGAGCCAGGCTATGTGTATCTT 58.959 45.455 16.16 0.00 39.88 2.40
3350 3416 2.682594 TGAGCCAGGCTATGTGTATCT 58.317 47.619 16.16 0.00 39.88 1.98
3394 3460 7.830739 ACATTAAACTTTTAGGGAGAATGCAG 58.169 34.615 0.00 0.00 0.00 4.41
3578 3758 9.182214 ACTACAAAGAACTGATGCATTCATATT 57.818 29.630 0.00 0.00 32.72 1.28
3581 3761 7.826252 AGTACTACAAAGAACTGATGCATTCAT 59.174 33.333 0.00 0.00 32.72 2.57
3582 3762 7.161404 AGTACTACAAAGAACTGATGCATTCA 58.839 34.615 0.00 0.00 0.00 2.57
3590 3783 5.506815 CCGTGTGAGTACTACAAAGAACTGA 60.507 44.000 0.00 0.00 0.00 3.41
3628 3821 3.376540 CCTCGAAGCTTAGACTATGCAC 58.623 50.000 19.31 12.69 0.00 4.57
3642 3835 4.624024 TCATAACGTTTAGTTGCCTCGAAG 59.376 41.667 5.91 0.00 44.01 3.79
3752 3947 0.462047 GACCAGTACCTTCATGGCCG 60.462 60.000 0.00 0.00 40.22 6.13
3854 4049 4.489679 AAGGAGTTGTTTTCTTCGATGC 57.510 40.909 0.00 0.00 0.00 3.91
3990 4185 9.060347 CAGGTAAAAAGATGCACATCATAGTAT 57.940 33.333 12.87 0.00 40.22 2.12
4010 4208 2.575735 TCAGCATGGATTCCACAGGTAA 59.424 45.455 7.76 0.00 35.80 2.85
4018 4216 5.302568 TGGATAAAATGTCAGCATGGATTCC 59.697 40.000 0.00 0.00 35.15 3.01
4023 4221 4.260907 CGAGTGGATAAAATGTCAGCATGG 60.261 45.833 0.00 0.00 35.15 3.66
4026 4224 4.200838 TCGAGTGGATAAAATGTCAGCA 57.799 40.909 0.00 0.00 0.00 4.41
4151 4349 1.747709 AGTGTTCATGATGAGCAGCC 58.252 50.000 12.34 2.24 38.26 4.85
4210 4411 6.554334 TGTGTTGACATAAGGTAGCTTTTC 57.446 37.500 13.21 7.90 0.00 2.29
4254 4455 5.298989 TGGCCTGAGTTAGACTGTAAAAA 57.701 39.130 3.32 0.00 0.00 1.94
4334 4538 5.645497 CACTAAGCTTGAATATATGCTCCCC 59.355 44.000 9.86 0.00 34.38 4.81
4343 4547 5.630415 TGTAGGCCACTAAGCTTGAATAT 57.370 39.130 9.86 0.00 0.00 1.28
4344 4548 5.630415 ATGTAGGCCACTAAGCTTGAATA 57.370 39.130 9.86 0.00 0.00 1.75
4346 4550 5.429681 TTATGTAGGCCACTAAGCTTGAA 57.570 39.130 9.86 0.00 0.00 2.69
4347 4551 5.183228 GTTTATGTAGGCCACTAAGCTTGA 58.817 41.667 9.86 0.00 0.00 3.02
4349 4553 4.189231 CGTTTATGTAGGCCACTAAGCTT 58.811 43.478 5.01 3.48 0.00 3.74
4350 4554 3.431766 CCGTTTATGTAGGCCACTAAGCT 60.432 47.826 5.01 0.00 0.00 3.74
4351 4555 2.870411 CCGTTTATGTAGGCCACTAAGC 59.130 50.000 5.01 0.00 0.00 3.09
4352 4556 3.869246 CACCGTTTATGTAGGCCACTAAG 59.131 47.826 5.01 0.00 0.00 2.18
4353 4557 3.369681 CCACCGTTTATGTAGGCCACTAA 60.370 47.826 5.01 0.00 0.00 2.24
4441 4645 3.797256 CAGGAACATCGTACGAGGAAATC 59.203 47.826 33.72 25.09 0.00 2.17
4447 4651 0.179171 ACGCAGGAACATCGTACGAG 60.179 55.000 23.89 16.87 36.86 4.18
4460 4664 2.754472 TGGAAATGATCGATACGCAGG 58.246 47.619 0.00 0.00 0.00 4.85
4483 4687 0.465705 GAAGATCGATGAGGGTGCCA 59.534 55.000 0.54 0.00 0.00 4.92
4484 4688 0.598680 CGAAGATCGATGAGGGTGCC 60.599 60.000 0.54 0.00 43.74 5.01
4558 4762 4.346734 ACGTACGTATTCACTACTGGTG 57.653 45.455 21.41 0.00 46.60 4.17
4563 4773 6.938542 AGCTAAGTACGTACGTATTCACTAC 58.061 40.000 29.05 17.74 32.82 2.73
4698 4945 0.603707 AGTTCACTGGACATGCCACG 60.604 55.000 4.93 4.99 43.33 4.94
4766 5020 2.012937 AATGCATGCAATTTCCACGG 57.987 45.000 26.68 0.00 0.00 4.94
4768 5022 5.170021 TGAACTAATGCATGCAATTTCCAC 58.830 37.500 26.68 13.72 0.00 4.02
4798 5059 1.821136 GATCCAGTGGCCCTTTTCAAG 59.179 52.381 3.51 0.00 0.00 3.02
4812 5099 1.683385 TGAGCACGTCCTATGATCCAG 59.317 52.381 0.00 0.00 31.34 3.86
4819 5106 2.171840 AGAACACTGAGCACGTCCTAT 58.828 47.619 0.00 0.00 0.00 2.57
4827 5114 1.939934 CGACCAAAAGAACACTGAGCA 59.060 47.619 0.00 0.00 0.00 4.26
4832 5119 1.676006 CTTGGCGACCAAAAGAACACT 59.324 47.619 11.56 0.00 43.44 3.55
4833 5120 1.673920 TCTTGGCGACCAAAAGAACAC 59.326 47.619 11.56 0.00 43.44 3.32
4834 5121 2.045561 TCTTGGCGACCAAAAGAACA 57.954 45.000 11.56 0.00 43.44 3.18
4835 5122 2.412847 CGATCTTGGCGACCAAAAGAAC 60.413 50.000 11.56 0.78 43.44 3.01
4836 5123 1.804151 CGATCTTGGCGACCAAAAGAA 59.196 47.619 11.56 0.86 43.44 2.52
4837 5124 1.438651 CGATCTTGGCGACCAAAAGA 58.561 50.000 11.56 2.65 43.44 2.52
4838 5125 0.447801 CCGATCTTGGCGACCAAAAG 59.552 55.000 11.56 0.00 43.44 2.27
4843 5130 1.996786 TACGACCGATCTTGGCGACC 61.997 60.000 13.53 0.00 34.24 4.79
4844 5131 0.864797 GTACGACCGATCTTGGCGAC 60.865 60.000 13.53 4.79 34.24 5.19
4875 5162 4.489771 CACCATCGCACCCTCCCC 62.490 72.222 0.00 0.00 0.00 4.81
4879 5166 2.666098 GGTACCACCATCGCACCCT 61.666 63.158 7.15 0.00 38.42 4.34
4880 5167 2.124860 GGTACCACCATCGCACCC 60.125 66.667 7.15 0.00 38.42 4.61
4892 5197 4.426313 GCACTGGCAGGGGGTACC 62.426 72.222 20.14 2.17 45.32 3.34
4922 5227 1.688735 GGCTTTTCCCTTTGCAACTCT 59.311 47.619 0.00 0.00 0.00 3.24
4939 5244 4.195334 GGATGGATGCGTGGGGCT 62.195 66.667 0.00 0.00 44.05 5.19
4973 5278 2.252260 CCGTTTCGCAGGCTTGTG 59.748 61.111 2.41 2.41 36.13 3.33
4983 5288 2.363788 TGAGAAGATCACCCGTTTCG 57.636 50.000 0.00 0.00 31.12 3.46
4992 5297 4.058124 CAACCAAAGACGTGAGAAGATCA 58.942 43.478 0.00 0.00 34.79 2.92
4993 5298 3.120511 GCAACCAAAGACGTGAGAAGATC 60.121 47.826 0.00 0.00 0.00 2.75
4994 5299 2.808543 GCAACCAAAGACGTGAGAAGAT 59.191 45.455 0.00 0.00 0.00 2.40
4995 5300 2.210116 GCAACCAAAGACGTGAGAAGA 58.790 47.619 0.00 0.00 0.00 2.87
4996 5301 1.264288 GGCAACCAAAGACGTGAGAAG 59.736 52.381 0.00 0.00 0.00 2.85
4997 5302 1.134220 AGGCAACCAAAGACGTGAGAA 60.134 47.619 0.00 0.00 37.17 2.87
4998 5303 0.468226 AGGCAACCAAAGACGTGAGA 59.532 50.000 0.00 0.00 37.17 3.27
4999 5304 0.588252 CAGGCAACCAAAGACGTGAG 59.412 55.000 0.00 0.00 37.17 3.51
5000 5305 1.444119 GCAGGCAACCAAAGACGTGA 61.444 55.000 0.00 0.00 37.17 4.35
5001 5306 1.008538 GCAGGCAACCAAAGACGTG 60.009 57.895 0.00 0.00 37.17 4.49
5002 5307 0.823356 ATGCAGGCAACCAAAGACGT 60.823 50.000 0.00 0.00 37.17 4.34
5003 5308 0.387622 CATGCAGGCAACCAAAGACG 60.388 55.000 0.00 0.00 37.17 4.18
5004 5309 0.961019 TCATGCAGGCAACCAAAGAC 59.039 50.000 0.00 0.00 37.17 3.01
5005 5310 1.250328 CTCATGCAGGCAACCAAAGA 58.750 50.000 0.00 0.00 37.17 2.52
5006 5311 0.245539 CCTCATGCAGGCAACCAAAG 59.754 55.000 0.00 0.00 34.56 2.77
5007 5312 2.353858 CCTCATGCAGGCAACCAAA 58.646 52.632 0.00 0.00 34.56 3.28
5008 5313 4.100479 CCTCATGCAGGCAACCAA 57.900 55.556 0.00 0.00 34.56 3.67
5029 5334 4.373116 TTCCGCGTGAGTCAGGCC 62.373 66.667 27.20 13.00 41.44 5.19
5030 5335 3.112709 GTTCCGCGTGAGTCAGGC 61.113 66.667 24.50 24.50 41.13 4.85
5031 5336 2.805353 CGTTCCGCGTGAGTCAGG 60.805 66.667 4.92 8.49 35.54 3.86
5032 5337 3.470567 GCGTTCCGCGTGAGTCAG 61.471 66.667 4.92 0.00 44.55 3.51
5044 5349 2.973316 AATCGGCCCGTTTGCGTTC 61.973 57.895 1.63 0.00 36.15 3.95
5045 5350 2.981350 AATCGGCCCGTTTGCGTT 60.981 55.556 1.63 0.00 36.15 4.84
5046 5351 3.732892 CAATCGGCCCGTTTGCGT 61.733 61.111 13.48 0.00 31.57 5.24
5047 5352 4.474846 CCAATCGGCCCGTTTGCG 62.475 66.667 19.13 10.24 35.89 4.85
5048 5353 2.926420 AACCAATCGGCCCGTTTGC 61.926 57.895 19.13 0.00 35.89 3.68
5049 5354 1.080839 CAACCAATCGGCCCGTTTG 60.081 57.895 17.91 17.91 36.64 2.93
5050 5355 2.926420 GCAACCAATCGGCCCGTTT 61.926 57.895 1.63 0.00 34.57 3.60
5051 5356 3.370231 GCAACCAATCGGCCCGTT 61.370 61.111 1.63 0.00 34.57 4.44
5056 5361 2.158561 AAAGCAGGCAACCAATCGGC 62.159 55.000 0.00 0.00 34.57 5.54
5057 5362 0.318120 AAAAGCAGGCAACCAATCGG 59.682 50.000 0.00 0.00 38.77 4.18
5058 5363 2.228822 AGTAAAAGCAGGCAACCAATCG 59.771 45.455 0.00 0.00 37.17 3.34
5059 5364 3.005791 ACAGTAAAAGCAGGCAACCAATC 59.994 43.478 0.00 0.00 37.17 2.67
5060 5365 2.965147 ACAGTAAAAGCAGGCAACCAAT 59.035 40.909 0.00 0.00 37.17 3.16
5061 5366 2.383855 ACAGTAAAAGCAGGCAACCAA 58.616 42.857 0.00 0.00 37.17 3.67
5062 5367 2.065899 ACAGTAAAAGCAGGCAACCA 57.934 45.000 0.00 0.00 37.17 3.67
5063 5368 3.123050 CAAACAGTAAAAGCAGGCAACC 58.877 45.455 0.00 0.00 37.17 3.77
5064 5369 3.123050 CCAAACAGTAAAAGCAGGCAAC 58.877 45.455 0.00 0.00 0.00 4.17
5065 5370 2.482839 GCCAAACAGTAAAAGCAGGCAA 60.483 45.455 0.00 0.00 40.50 4.52
5066 5371 1.068434 GCCAAACAGTAAAAGCAGGCA 59.932 47.619 0.00 0.00 40.50 4.75
5067 5372 1.605457 GGCCAAACAGTAAAAGCAGGC 60.605 52.381 0.00 0.00 40.08 4.85
5068 5373 1.000843 GGGCCAAACAGTAAAAGCAGG 59.999 52.381 4.39 0.00 0.00 4.85
5069 5374 1.335872 CGGGCCAAACAGTAAAAGCAG 60.336 52.381 4.39 0.00 0.00 4.24
5070 5375 0.671251 CGGGCCAAACAGTAAAAGCA 59.329 50.000 4.39 0.00 0.00 3.91
5071 5376 0.666274 GCGGGCCAAACAGTAAAAGC 60.666 55.000 4.39 0.00 0.00 3.51
5072 5377 0.671251 TGCGGGCCAAACAGTAAAAG 59.329 50.000 4.39 0.00 0.00 2.27
5073 5378 1.000283 CATGCGGGCCAAACAGTAAAA 60.000 47.619 4.39 0.00 0.00 1.52
5074 5379 0.600557 CATGCGGGCCAAACAGTAAA 59.399 50.000 4.39 0.00 0.00 2.01
5075 5380 1.247419 CCATGCGGGCCAAACAGTAA 61.247 55.000 4.39 0.00 0.00 2.24
5076 5381 1.677300 CCATGCGGGCCAAACAGTA 60.677 57.895 4.39 0.00 0.00 2.74
5077 5382 2.990967 CCATGCGGGCCAAACAGT 60.991 61.111 4.39 0.00 0.00 3.55
5087 5392 1.302383 TTAAGGTTCGTGCCATGCGG 61.302 55.000 0.00 0.00 0.00 5.69
5088 5393 0.519519 TTTAAGGTTCGTGCCATGCG 59.480 50.000 0.00 0.00 0.00 4.73
5089 5394 1.732405 GCTTTAAGGTTCGTGCCATGC 60.732 52.381 0.00 0.00 0.00 4.06
5090 5395 1.465689 CGCTTTAAGGTTCGTGCCATG 60.466 52.381 0.00 0.00 0.00 3.66
5091 5396 0.802494 CGCTTTAAGGTTCGTGCCAT 59.198 50.000 0.00 0.00 0.00 4.40
5092 5397 1.847890 GCGCTTTAAGGTTCGTGCCA 61.848 55.000 0.00 0.00 0.00 4.92
5093 5398 1.154282 GCGCTTTAAGGTTCGTGCC 60.154 57.895 0.00 0.00 0.00 5.01
5094 5399 0.179222 GAGCGCTTTAAGGTTCGTGC 60.179 55.000 13.26 0.00 0.00 5.34
5095 5400 0.442699 GGAGCGCTTTAAGGTTCGTG 59.557 55.000 13.26 0.00 0.00 4.35
5096 5401 0.320697 AGGAGCGCTTTAAGGTTCGT 59.679 50.000 13.26 0.00 0.00 3.85
5097 5402 0.721718 CAGGAGCGCTTTAAGGTTCG 59.278 55.000 13.26 0.00 0.00 3.95
5098 5403 1.087501 CCAGGAGCGCTTTAAGGTTC 58.912 55.000 13.26 0.00 0.00 3.62
5099 5404 0.322546 CCCAGGAGCGCTTTAAGGTT 60.323 55.000 13.26 0.00 0.00 3.50
5100 5405 1.299976 CCCAGGAGCGCTTTAAGGT 59.700 57.895 13.26 0.00 0.00 3.50
5101 5406 2.115291 GCCCAGGAGCGCTTTAAGG 61.115 63.158 13.26 12.33 0.00 2.69
5102 5407 2.115291 GGCCCAGGAGCGCTTTAAG 61.115 63.158 13.26 1.83 0.00 1.85
5103 5408 2.045340 GGCCCAGGAGCGCTTTAA 60.045 61.111 13.26 0.00 0.00 1.52
5104 5409 3.009115 AGGCCCAGGAGCGCTTTA 61.009 61.111 13.26 0.00 0.00 1.85
5105 5410 4.729918 CAGGCCCAGGAGCGCTTT 62.730 66.667 13.26 0.00 0.00 3.51
5117 5422 2.381941 ATTCTCAGGGAGCCAGGCC 61.382 63.158 8.22 0.00 0.00 5.19
5118 5423 1.153005 CATTCTCAGGGAGCCAGGC 60.153 63.158 1.84 1.84 0.00 4.85
5119 5424 1.153005 GCATTCTCAGGGAGCCAGG 60.153 63.158 0.00 0.00 0.00 4.45
5120 5425 0.255318 AAGCATTCTCAGGGAGCCAG 59.745 55.000 0.00 0.00 0.00 4.85
5121 5426 0.034767 CAAGCATTCTCAGGGAGCCA 60.035 55.000 0.00 0.00 0.00 4.75
5122 5427 0.254178 TCAAGCATTCTCAGGGAGCC 59.746 55.000 0.00 0.00 0.00 4.70
5123 5428 2.119801 TTCAAGCATTCTCAGGGAGC 57.880 50.000 0.00 0.00 0.00 4.70
5124 5429 3.380637 CCAATTCAAGCATTCTCAGGGAG 59.619 47.826 0.00 0.00 0.00 4.30
5125 5430 3.359033 CCAATTCAAGCATTCTCAGGGA 58.641 45.455 0.00 0.00 0.00 4.20
5126 5431 2.429610 CCCAATTCAAGCATTCTCAGGG 59.570 50.000 0.00 0.00 0.00 4.45
5127 5432 2.159142 GCCCAATTCAAGCATTCTCAGG 60.159 50.000 0.00 0.00 0.00 3.86
5128 5433 2.159142 GGCCCAATTCAAGCATTCTCAG 60.159 50.000 0.00 0.00 0.00 3.35
5129 5434 1.826720 GGCCCAATTCAAGCATTCTCA 59.173 47.619 0.00 0.00 0.00 3.27
5130 5435 1.826720 TGGCCCAATTCAAGCATTCTC 59.173 47.619 0.00 0.00 0.00 2.87
5131 5436 1.829222 CTGGCCCAATTCAAGCATTCT 59.171 47.619 0.00 0.00 0.00 2.40
5132 5437 1.134610 CCTGGCCCAATTCAAGCATTC 60.135 52.381 0.00 0.00 0.00 2.67
5133 5438 0.906775 CCTGGCCCAATTCAAGCATT 59.093 50.000 0.00 0.00 0.00 3.56
5134 5439 1.619807 GCCTGGCCCAATTCAAGCAT 61.620 55.000 7.66 0.00 0.00 3.79
5135 5440 2.285024 GCCTGGCCCAATTCAAGCA 61.285 57.895 7.66 0.00 0.00 3.91
5136 5441 2.580815 GCCTGGCCCAATTCAAGC 59.419 61.111 7.66 0.00 0.00 4.01
5137 5442 3.302129 GGCCTGGCCCAATTCAAG 58.698 61.111 27.77 0.00 44.06 3.02
5200 5505 3.843240 GCAACGCGGCTTCTCGAG 61.843 66.667 12.47 5.93 36.10 4.04
5201 5506 4.357947 AGCAACGCGGCTTCTCGA 62.358 61.111 12.47 0.00 42.71 4.04
5208 5513 1.441016 CTTCAAGAAGCAACGCGGC 60.441 57.895 12.47 4.85 0.00 6.53
5209 5514 4.826600 CTTCAAGAAGCAACGCGG 57.173 55.556 12.47 0.00 0.00 6.46
5217 5522 0.946221 ACTGTCGGCGCTTCAAGAAG 60.946 55.000 7.64 5.46 41.24 2.85
5218 5523 0.531974 AACTGTCGGCGCTTCAAGAA 60.532 50.000 7.64 0.00 0.00 2.52
5219 5524 0.315886 TAACTGTCGGCGCTTCAAGA 59.684 50.000 7.64 0.00 0.00 3.02
5220 5525 1.359848 ATAACTGTCGGCGCTTCAAG 58.640 50.000 7.64 3.10 0.00 3.02
5221 5526 1.803334 AATAACTGTCGGCGCTTCAA 58.197 45.000 7.64 0.00 0.00 2.69
5222 5527 2.536365 CTAATAACTGTCGGCGCTTCA 58.464 47.619 7.64 3.36 0.00 3.02
5223 5528 1.258197 GCTAATAACTGTCGGCGCTTC 59.742 52.381 7.64 0.00 0.00 3.86
5224 5529 1.287425 GCTAATAACTGTCGGCGCTT 58.713 50.000 7.64 0.00 0.00 4.68
5225 5530 0.529992 GGCTAATAACTGTCGGCGCT 60.530 55.000 7.64 0.00 0.00 5.92
5226 5531 0.529992 AGGCTAATAACTGTCGGCGC 60.530 55.000 0.00 0.00 0.00 6.53
5227 5532 1.202371 TGAGGCTAATAACTGTCGGCG 60.202 52.381 0.00 0.00 0.00 6.46
5228 5533 2.202566 GTGAGGCTAATAACTGTCGGC 58.797 52.381 0.00 0.00 0.00 5.54
5229 5534 2.798499 CGGTGAGGCTAATAACTGTCGG 60.798 54.545 0.00 0.00 0.00 4.79
5230 5535 2.460918 CGGTGAGGCTAATAACTGTCG 58.539 52.381 0.00 0.00 0.00 4.35
5231 5536 2.159085 AGCGGTGAGGCTAATAACTGTC 60.159 50.000 0.00 0.00 42.62 3.51
5232 5537 1.831736 AGCGGTGAGGCTAATAACTGT 59.168 47.619 0.00 0.00 42.62 3.55
5233 5538 2.474816 GAGCGGTGAGGCTAATAACTG 58.525 52.381 0.00 0.00 44.93 3.16
5234 5539 1.413077 GGAGCGGTGAGGCTAATAACT 59.587 52.381 0.00 0.00 44.93 2.24
5235 5540 1.540580 GGGAGCGGTGAGGCTAATAAC 60.541 57.143 0.00 0.00 44.93 1.89
5236 5541 0.756903 GGGAGCGGTGAGGCTAATAA 59.243 55.000 0.00 0.00 44.93 1.40
5237 5542 0.105658 AGGGAGCGGTGAGGCTAATA 60.106 55.000 0.00 0.00 44.93 0.98
5238 5543 1.383248 AGGGAGCGGTGAGGCTAAT 60.383 57.895 0.00 0.00 44.93 1.73
5239 5544 2.038975 AGGGAGCGGTGAGGCTAA 59.961 61.111 0.00 0.00 44.93 3.09
5240 5545 2.442272 GAGGGAGCGGTGAGGCTA 60.442 66.667 0.00 0.00 44.93 3.93
5242 5547 3.844090 GAGAGGGAGCGGTGAGGC 61.844 72.222 0.00 0.00 0.00 4.70
5243 5548 3.151022 GGAGAGGGAGCGGTGAGG 61.151 72.222 0.00 0.00 0.00 3.86
5244 5549 3.151022 GGGAGAGGGAGCGGTGAG 61.151 72.222 0.00 0.00 0.00 3.51
5245 5550 4.779733 GGGGAGAGGGAGCGGTGA 62.780 72.222 0.00 0.00 0.00 4.02
5248 5553 4.787280 AGTGGGGAGAGGGAGCGG 62.787 72.222 0.00 0.00 0.00 5.52
5249 5554 3.151022 GAGTGGGGAGAGGGAGCG 61.151 72.222 0.00 0.00 0.00 5.03
5250 5555 1.760480 GAGAGTGGGGAGAGGGAGC 60.760 68.421 0.00 0.00 0.00 4.70
5251 5556 1.075600 GGAGAGTGGGGAGAGGGAG 60.076 68.421 0.00 0.00 0.00 4.30
5252 5557 2.637640 GGGAGAGTGGGGAGAGGGA 61.638 68.421 0.00 0.00 0.00 4.20
5253 5558 2.041405 GGGAGAGTGGGGAGAGGG 60.041 72.222 0.00 0.00 0.00 4.30
5254 5559 2.041405 GGGGAGAGTGGGGAGAGG 60.041 72.222 0.00 0.00 0.00 3.69
5255 5560 1.382420 CAGGGGAGAGTGGGGAGAG 60.382 68.421 0.00 0.00 0.00 3.20
5256 5561 1.751143 AACAGGGGAGAGTGGGGAGA 61.751 60.000 0.00 0.00 0.00 3.71
5257 5562 1.229658 AACAGGGGAGAGTGGGGAG 60.230 63.158 0.00 0.00 0.00 4.30
5258 5563 1.538876 CAACAGGGGAGAGTGGGGA 60.539 63.158 0.00 0.00 0.00 4.81
5259 5564 1.842381 GACAACAGGGGAGAGTGGGG 61.842 65.000 0.00 0.00 0.00 4.96
5260 5565 1.679898 GACAACAGGGGAGAGTGGG 59.320 63.158 0.00 0.00 0.00 4.61
5261 5566 1.679898 GGACAACAGGGGAGAGTGG 59.320 63.158 0.00 0.00 0.00 4.00
5262 5567 0.838122 AGGGACAACAGGGGAGAGTG 60.838 60.000 0.00 0.00 0.00 3.51
5263 5568 0.790993 TAGGGACAACAGGGGAGAGT 59.209 55.000 0.00 0.00 0.00 3.24
5264 5569 1.196012 GTAGGGACAACAGGGGAGAG 58.804 60.000 0.00 0.00 0.00 3.20
5265 5570 0.790993 AGTAGGGACAACAGGGGAGA 59.209 55.000 0.00 0.00 0.00 3.71
5266 5571 1.196012 GAGTAGGGACAACAGGGGAG 58.804 60.000 0.00 0.00 0.00 4.30
5267 5572 0.790993 AGAGTAGGGACAACAGGGGA 59.209 55.000 0.00 0.00 0.00 4.81
5268 5573 1.196012 GAGAGTAGGGACAACAGGGG 58.804 60.000 0.00 0.00 0.00 4.79
5269 5574 1.550976 GTGAGAGTAGGGACAACAGGG 59.449 57.143 0.00 0.00 0.00 4.45
5270 5575 1.550976 GGTGAGAGTAGGGACAACAGG 59.449 57.143 0.00 0.00 0.00 4.00
5271 5576 1.202582 CGGTGAGAGTAGGGACAACAG 59.797 57.143 0.00 0.00 0.00 3.16
5272 5577 1.254026 CGGTGAGAGTAGGGACAACA 58.746 55.000 0.00 0.00 0.00 3.33
5273 5578 0.531200 CCGGTGAGAGTAGGGACAAC 59.469 60.000 0.00 0.00 0.00 3.32
5274 5579 1.255667 GCCGGTGAGAGTAGGGACAA 61.256 60.000 1.90 0.00 0.00 3.18
5275 5580 1.681327 GCCGGTGAGAGTAGGGACA 60.681 63.158 1.90 0.00 0.00 4.02
5276 5581 2.772691 CGCCGGTGAGAGTAGGGAC 61.773 68.421 10.20 0.00 0.00 4.46
5277 5582 2.439701 CGCCGGTGAGAGTAGGGA 60.440 66.667 10.20 0.00 0.00 4.20
5278 5583 3.528370 CCGCCGGTGAGAGTAGGG 61.528 72.222 18.79 0.00 0.00 3.53
5279 5584 4.208686 GCCGCCGGTGAGAGTAGG 62.209 72.222 18.79 0.00 0.00 3.18
5280 5585 4.554363 CGCCGCCGGTGAGAGTAG 62.554 72.222 18.79 0.00 34.74 2.57
5294 5599 4.918201 CTCCTCCAATCCGCCGCC 62.918 72.222 0.00 0.00 0.00 6.13
5295 5600 3.798954 CTCTCCTCCAATCCGCCGC 62.799 68.421 0.00 0.00 0.00 6.53
5296 5601 2.419198 CTCTCCTCCAATCCGCCG 59.581 66.667 0.00 0.00 0.00 6.46
5297 5602 2.110006 GCTCTCCTCCAATCCGCC 59.890 66.667 0.00 0.00 0.00 6.13
5298 5603 0.813210 CTTGCTCTCCTCCAATCCGC 60.813 60.000 0.00 0.00 0.00 5.54
5299 5604 0.826715 TCTTGCTCTCCTCCAATCCG 59.173 55.000 0.00 0.00 0.00 4.18
5300 5605 2.503356 TCTTCTTGCTCTCCTCCAATCC 59.497 50.000 0.00 0.00 0.00 3.01
5301 5606 3.530535 GTCTTCTTGCTCTCCTCCAATC 58.469 50.000 0.00 0.00 0.00 2.67
5302 5607 2.238395 GGTCTTCTTGCTCTCCTCCAAT 59.762 50.000 0.00 0.00 0.00 3.16
5303 5608 1.625818 GGTCTTCTTGCTCTCCTCCAA 59.374 52.381 0.00 0.00 0.00 3.53
5304 5609 1.270907 GGTCTTCTTGCTCTCCTCCA 58.729 55.000 0.00 0.00 0.00 3.86
5305 5610 1.066502 GTGGTCTTCTTGCTCTCCTCC 60.067 57.143 0.00 0.00 0.00 4.30
5306 5611 1.066502 GGTGGTCTTCTTGCTCTCCTC 60.067 57.143 0.00 0.00 0.00 3.71
5307 5612 0.980423 GGTGGTCTTCTTGCTCTCCT 59.020 55.000 0.00 0.00 0.00 3.69
5308 5613 0.390472 CGGTGGTCTTCTTGCTCTCC 60.390 60.000 0.00 0.00 0.00 3.71
5309 5614 0.390472 CCGGTGGTCTTCTTGCTCTC 60.390 60.000 0.00 0.00 0.00 3.20
5310 5615 1.674057 CCGGTGGTCTTCTTGCTCT 59.326 57.895 0.00 0.00 0.00 4.09
5311 5616 4.285851 CCGGTGGTCTTCTTGCTC 57.714 61.111 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.