Multiple sequence alignment - TraesCS3D01G399600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G399600 chr3D 100.000 2570 0 0 1 2570 514652957 514650388 0.000000e+00 4747.0
1 TraesCS3D01G399600 chr3B 89.399 1547 76 35 630 2138 676944867 676943371 0.000000e+00 1868.0
2 TraesCS3D01G399600 chr3A 92.627 1302 47 23 561 1847 649541676 649540409 0.000000e+00 1827.0
3 TraesCS3D01G399600 chr3A 96.732 306 10 0 3 308 649543495 649543190 6.340000e-141 510.0
4 TraesCS3D01G399600 chr3A 87.616 323 37 1 2108 2430 649537115 649536796 3.120000e-99 372.0
5 TraesCS3D01G399600 chr3A 88.189 254 19 4 317 560 649542136 649541884 2.500000e-75 292.0
6 TraesCS3D01G399600 chr3A 91.538 130 11 0 1930 2059 649540391 649540262 2.030000e-41 180.0
7 TraesCS3D01G399600 chr1D 77.724 413 73 16 1006 1409 357438442 357438040 4.280000e-58 235.0
8 TraesCS3D01G399600 chr1D 91.667 60 2 1 2425 2481 206102132 206102191 2.120000e-11 80.5
9 TraesCS3D01G399600 chr1B 80.712 337 33 15 1045 1372 480826695 480826382 1.540000e-57 233.0
10 TraesCS3D01G399600 chr1B 100.000 29 0 0 435 463 607426337 607426365 1.000000e-03 54.7
11 TraesCS3D01G399600 chr1A 80.769 312 46 12 1045 1352 458510984 458510683 5.530000e-57 231.0
12 TraesCS3D01G399600 chr1A 80.769 234 35 7 331 560 557106599 557106826 9.450000e-40 174.0
13 TraesCS3D01G399600 chr5A 82.917 240 25 3 328 559 563840885 563841116 4.340000e-48 202.0
14 TraesCS3D01G399600 chr5A 81.116 233 35 8 331 559 341717473 341717246 7.310000e-41 178.0
15 TraesCS3D01G399600 chr5A 89.062 64 4 3 2440 2501 428189394 428189332 2.740000e-10 76.8
16 TraesCS3D01G399600 chr4D 83.051 236 25 6 332 560 189114780 189114553 1.560000e-47 200.0
17 TraesCS3D01G399600 chr7D 82.128 235 35 6 329 560 407258822 407258592 7.260000e-46 195.0
18 TraesCS3D01G399600 chr7D 83.333 204 17 8 330 525 16766858 16766664 3.400000e-39 172.0
19 TraesCS3D01G399600 chr7D 91.753 97 8 0 464 560 478223133 478223229 4.460000e-28 135.0
20 TraesCS3D01G399600 chr7D 97.917 48 1 0 2434 2481 509501332 509501285 1.640000e-12 84.2
21 TraesCS3D01G399600 chr2B 80.992 242 33 7 329 560 11344173 11343935 2.030000e-41 180.0
22 TraesCS3D01G399600 chr2B 80.556 216 27 3 331 539 264581354 264581147 4.430000e-33 152.0
23 TraesCS3D01G399600 chr2B 92.188 64 2 3 226 289 792023167 792023107 1.270000e-13 87.9
24 TraesCS3D01G399600 chr2B 94.545 55 3 0 2428 2482 621961682 621961736 4.560000e-13 86.1
25 TraesCS3D01G399600 chr2B 90.625 64 3 3 226 289 791939321 791939261 5.890000e-12 82.4
26 TraesCS3D01G399600 chrUn 80.833 240 31 6 329 561 81540398 81540629 9.450000e-40 174.0
27 TraesCS3D01G399600 chrUn 77.406 239 35 13 331 560 22355732 22355960 9.660000e-25 124.0
28 TraesCS3D01G399600 chr7A 80.833 240 31 6 329 561 1791109 1790878 9.450000e-40 174.0
29 TraesCS3D01G399600 chr7A 80.833 240 31 6 329 561 1810604 1810373 9.450000e-40 174.0
30 TraesCS3D01G399600 chr7A 80.833 240 31 6 329 561 1830977 1830746 9.450000e-40 174.0
31 TraesCS3D01G399600 chr5B 89.720 107 11 0 329 435 211454529 211454635 1.240000e-28 137.0
32 TraesCS3D01G399600 chr5B 90.164 61 4 2 2422 2481 550215206 550215265 7.620000e-11 78.7
33 TraesCS3D01G399600 chr4A 75.299 251 44 10 318 560 613571314 613571074 1.260000e-18 104.0
34 TraesCS3D01G399600 chr6D 75.527 237 40 12 331 560 99800363 99800588 1.630000e-17 100.0
35 TraesCS3D01G399600 chr6D 92.857 56 4 0 2426 2481 382725642 382725587 5.890000e-12 82.4
36 TraesCS3D01G399600 chr6B 96.491 57 1 1 2425 2481 7144743 7144798 2.720000e-15 93.5
37 TraesCS3D01G399600 chr6B 92.727 55 4 0 2429 2483 487832318 487832264 2.120000e-11 80.5
38 TraesCS3D01G399600 chr7B 94.340 53 2 1 2429 2481 506497868 506497817 2.120000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G399600 chr3D 514650388 514652957 2569 True 4747.0 4747 100.0000 1 2570 1 chr3D.!!$R1 2569
1 TraesCS3D01G399600 chr3B 676943371 676944867 1496 True 1868.0 1868 89.3990 630 2138 1 chr3B.!!$R1 1508
2 TraesCS3D01G399600 chr3A 649536796 649543495 6699 True 636.2 1827 91.3404 3 2430 5 chr3A.!!$R1 2427

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
315 316 0.179105 ACAACGCACGTACTTGACCA 60.179 50.0 3.09 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2155 6558 0.106519 ATATTGCAGAGCCACCACCC 60.107 55.0 0.0 0.0 0.0 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 1.954382 GTCCAACCTTTCACCTTCCAC 59.046 52.381 0.00 0.00 0.00 4.02
65 66 3.460340 TCCAACCTTTCACCTTCCACTAA 59.540 43.478 0.00 0.00 0.00 2.24
73 74 4.042271 TCACCTTCCACTAATTTTCCCC 57.958 45.455 0.00 0.00 0.00 4.81
142 143 4.509970 CGTAATAAATCAGATCAACCGCCA 59.490 41.667 0.00 0.00 0.00 5.69
180 181 4.595762 TCACGGCCCATAAGTAGATTAC 57.404 45.455 0.00 0.00 0.00 1.89
311 312 3.702792 GTGACAACGCACGTACTTG 57.297 52.632 0.00 0.00 0.00 3.16
312 313 1.202203 GTGACAACGCACGTACTTGA 58.798 50.000 3.09 0.00 0.00 3.02
313 314 1.071698 GTGACAACGCACGTACTTGAC 60.072 52.381 3.09 0.00 0.00 3.18
315 316 0.179105 ACAACGCACGTACTTGACCA 60.179 50.000 3.09 0.00 0.00 4.02
340 1386 4.393239 ACTGGTTGTACTACTACCTCCA 57.607 45.455 17.43 1.34 43.06 3.86
353 1399 7.565680 ACTACTACCTCCATTCTGGTTTATTG 58.434 38.462 0.00 0.00 39.03 1.90
358 1404 3.954258 CTCCATTCTGGTTTATTGGTCCC 59.046 47.826 0.00 0.00 39.03 4.46
361 1407 5.060929 CCATTCTGGTTTATTGGTCCCCAA 61.061 45.833 0.00 0.00 39.29 4.12
406 1452 8.749841 TGACCATGGATTTAATTAACAAAACG 57.250 30.769 21.47 0.00 0.00 3.60
407 1453 8.361139 TGACCATGGATTTAATTAACAAAACGT 58.639 29.630 21.47 0.00 0.00 3.99
408 1454 9.198837 GACCATGGATTTAATTAACAAAACGTT 57.801 29.630 21.47 0.00 41.91 3.99
409 1455 9.198837 ACCATGGATTTAATTAACAAAACGTTC 57.801 29.630 21.47 0.00 39.14 3.95
410 1456 8.369588 CCATGGATTTAATTAACAAAACGTTCG 58.630 33.333 5.56 0.00 39.14 3.95
411 1457 8.907685 CATGGATTTAATTAACAAAACGTTCGT 58.092 29.630 0.00 0.00 39.14 3.85
412 1458 8.271231 TGGATTTAATTAACAAAACGTTCGTG 57.729 30.769 0.00 5.79 39.14 4.35
413 1459 7.096558 TGGATTTAATTAACAAAACGTTCGTGC 60.097 33.333 0.00 0.00 39.14 5.34
419 1468 1.398739 ACAAAACGTTCGTGCATGTCA 59.601 42.857 0.00 0.00 0.00 3.58
552 1608 7.870445 GCACAAATTACAAAGAGGACCAATAAA 59.130 33.333 0.00 0.00 0.00 1.40
650 1913 2.935238 GCCTGTAACTGCGATGGAGAAA 60.935 50.000 0.00 0.00 0.00 2.52
814 2077 3.119245 ACCACACGGCTGTATTAGTACTG 60.119 47.826 5.39 0.00 34.57 2.74
902 2165 1.048601 TGTGGGTTGACCTCTCACTC 58.951 55.000 0.00 0.00 41.11 3.51
994 2258 2.435059 GCTCGGAAGGTGGTCAGC 60.435 66.667 0.00 0.00 0.00 4.26
1248 2515 2.657237 CTCAACTTCCCGGAGCGT 59.343 61.111 0.73 0.00 0.00 5.07
1533 2809 2.125350 GAGCAGCTTGTCTCCGGG 60.125 66.667 0.00 0.00 0.00 5.73
1584 2860 9.882996 ATATTGATGTAAAATTGAGCATACACG 57.117 29.630 0.00 0.00 31.65 4.49
1586 2862 7.371126 TGATGTAAAATTGAGCATACACGAA 57.629 32.000 0.00 0.00 31.65 3.85
1635 2916 5.447683 GCTGATGCAATAAAGATCGAACACA 60.448 40.000 0.00 0.00 39.41 3.72
1657 2938 0.749818 TCGCAGTTGGCAAGGTTGAA 60.750 50.000 0.00 0.00 45.17 2.69
1660 2941 0.030638 CAGTTGGCAAGGTTGAACCG 59.969 55.000 8.98 0.00 44.90 4.44
1672 2953 3.243267 AGGTTGAACCGTTTGAAATTCGG 60.243 43.478 8.98 5.55 44.90 4.30
1676 2957 4.352887 TGAACCGTTTGAAATTCGGAAAC 58.647 39.130 13.00 3.80 46.05 2.78
1678 2959 3.959943 ACCGTTTGAAATTCGGAAACAG 58.040 40.909 13.00 1.83 46.05 3.16
1693 2977 4.059459 CAGTTCCGCGCACACGTC 62.059 66.667 8.75 0.00 42.83 4.34
1701 2985 1.587876 GCGCACACGTCCGATATGA 60.588 57.895 0.30 0.00 42.83 2.15
1738 3026 3.574284 TGACATTTGAAATTGGCGAGG 57.426 42.857 0.00 0.00 0.00 4.63
1783 3075 3.559657 GAGTGGCGACAGTGCTCGT 62.560 63.158 1.42 0.00 46.33 4.18
1784 3076 3.406361 GTGGCGACAGTGCTCGTG 61.406 66.667 0.00 0.00 44.46 4.35
1900 3204 2.255406 TGCTGAGGCTCTTCTTTCTCT 58.745 47.619 16.72 0.00 39.59 3.10
1901 3205 2.028294 TGCTGAGGCTCTTCTTTCTCTG 60.028 50.000 16.72 0.00 39.59 3.35
1912 3216 0.739112 CTTTCTCTGAGCTGCGGACC 60.739 60.000 0.00 0.00 0.00 4.46
1916 3220 2.279120 CTGAGCTGCGGACCGATC 60.279 66.667 20.50 9.83 0.00 3.69
1918 3222 3.889044 GAGCTGCGGACCGATCGA 61.889 66.667 20.50 0.00 0.00 3.59
1933 3237 1.405821 GATCGAGACCGGTCAATGACT 59.594 52.381 35.00 14.66 44.86 3.41
1951 3256 1.087501 CTAGCAACCCTTTTCGCCTC 58.912 55.000 0.00 0.00 0.00 4.70
1986 3291 0.842635 GGAGGATGGGTCAGAGCATT 59.157 55.000 1.20 0.00 0.00 3.56
2072 3448 9.846248 GTTAGCTATCACTTGATGTCAATTTTT 57.154 29.630 1.77 0.00 36.05 1.94
2104 3480 2.038295 TGGGAATTGCCAAATGTTGTCC 59.962 45.455 17.38 0.00 38.95 4.02
2106 3482 3.244526 GGGAATTGCCAAATGTTGTCCTT 60.245 43.478 11.71 0.00 38.95 3.36
2119 6522 3.761218 TGTTGTCCTTGTCAACACATTGT 59.239 39.130 7.28 0.00 46.35 2.71
2124 6527 2.287788 CCTTGTCAACACATTGTCAGGC 60.288 50.000 0.00 0.00 35.67 4.85
2211 6614 2.864489 GCGCTAGGAAGGCTCAACTATC 60.864 54.545 0.00 0.00 0.00 2.08
2214 6617 3.895041 GCTAGGAAGGCTCAACTATCTCT 59.105 47.826 0.00 0.00 0.00 3.10
2232 6635 3.259751 GTTGCGGGTATCGACGGC 61.260 66.667 0.00 0.00 42.43 5.68
2253 6656 3.110178 GGTGTGGCGTCGTAGTGC 61.110 66.667 0.00 0.00 0.00 4.40
2255 6658 4.710695 TGTGGCGTCGTAGTGCGG 62.711 66.667 0.00 0.00 41.72 5.69
2261 6664 3.834799 GTCGTAGTGCGGGGAGGG 61.835 72.222 0.00 0.00 41.72 4.30
2275 6678 0.757188 GGAGGGCTGCAGCTAGTAGA 60.757 60.000 35.82 0.00 41.70 2.59
2286 6689 0.466124 GCTAGTAGAGGCTTGGGTGG 59.534 60.000 0.00 0.00 0.00 4.61
2289 6692 0.178903 AGTAGAGGCTTGGGTGGTCA 60.179 55.000 0.00 0.00 0.00 4.02
2292 6695 2.856000 AGGCTTGGGTGGTCAGCT 60.856 61.111 0.13 0.00 0.00 4.24
2298 6701 1.640593 TTGGGTGGTCAGCTGGTTCA 61.641 55.000 15.13 7.16 0.00 3.18
2299 6702 1.302832 GGGTGGTCAGCTGGTTCAG 60.303 63.158 15.13 0.00 34.12 3.02
2300 6703 1.302832 GGTGGTCAGCTGGTTCAGG 60.303 63.158 15.13 0.00 31.21 3.86
2305 6708 0.977395 GTCAGCTGGTTCAGGGTAGT 59.023 55.000 15.13 0.00 31.21 2.73
2313 6716 1.481363 GGTTCAGGGTAGTAGAGTGCC 59.519 57.143 0.00 0.00 0.00 5.01
2330 6733 1.674322 CCCACAAACGGGCGAGAAT 60.674 57.895 0.00 0.00 40.07 2.40
2342 6745 0.176680 GCGAGAATCTTGCCTCTGGA 59.823 55.000 11.37 0.00 35.00 3.86
2349 6752 0.842030 TCTTGCCTCTGGACCATGGT 60.842 55.000 19.89 19.89 0.00 3.55
2351 6754 2.184020 TTGCCTCTGGACCATGGTCG 62.184 60.000 33.24 22.78 45.41 4.79
2352 6755 2.903357 CCTCTGGACCATGGTCGG 59.097 66.667 33.24 27.49 45.41 4.79
2357 6760 2.284798 CTGGACCATGGTCGGAGTCG 62.285 65.000 33.24 16.27 45.41 4.18
2374 6777 1.135489 GTCGGCAAGACGATGTCTACA 60.135 52.381 0.00 0.00 42.59 2.74
2384 6787 2.896243 GATGTCTACAGACGTCGTGT 57.104 50.000 19.62 19.62 46.94 4.49
2398 6801 1.986378 GTCGTGTCCTTCATGAAGTCG 59.014 52.381 29.03 24.84 42.74 4.18
2399 6802 1.611977 TCGTGTCCTTCATGAAGTCGT 59.388 47.619 29.03 0.00 38.89 4.34
2400 6803 2.035449 TCGTGTCCTTCATGAAGTCGTT 59.965 45.455 29.03 0.00 38.89 3.85
2413 6816 6.702282 TCATGAAGTCGTTGTTGTATTGTGTA 59.298 34.615 0.00 0.00 0.00 2.90
2424 6827 8.995220 GTTGTTGTATTGTGTACCTATTCTTCA 58.005 33.333 0.00 0.00 0.00 3.02
2432 6835 8.997621 TTGTGTACCTATTCTTCAATGTACTC 57.002 34.615 0.00 0.00 29.01 2.59
2433 6836 7.553334 TGTGTACCTATTCTTCAATGTACTCC 58.447 38.462 0.00 0.00 29.01 3.85
2434 6837 6.985059 GTGTACCTATTCTTCAATGTACTCCC 59.015 42.308 0.00 0.00 29.01 4.30
2435 6838 6.901300 TGTACCTATTCTTCAATGTACTCCCT 59.099 38.462 0.00 0.00 29.01 4.20
2436 6839 6.487299 ACCTATTCTTCAATGTACTCCCTC 57.513 41.667 0.00 0.00 0.00 4.30
2437 6840 5.367060 ACCTATTCTTCAATGTACTCCCTCC 59.633 44.000 0.00 0.00 0.00 4.30
2438 6841 3.887621 TTCTTCAATGTACTCCCTCCG 57.112 47.619 0.00 0.00 0.00 4.63
2439 6842 2.816411 TCTTCAATGTACTCCCTCCGT 58.184 47.619 0.00 0.00 0.00 4.69
2440 6843 3.170717 TCTTCAATGTACTCCCTCCGTT 58.829 45.455 0.00 0.00 0.00 4.44
2441 6844 4.346730 TCTTCAATGTACTCCCTCCGTTA 58.653 43.478 0.00 0.00 0.00 3.18
2442 6845 4.401519 TCTTCAATGTACTCCCTCCGTTAG 59.598 45.833 0.00 0.00 0.00 2.34
2443 6846 3.705051 TCAATGTACTCCCTCCGTTAGT 58.295 45.455 0.00 0.00 0.00 2.24
2444 6847 3.446161 TCAATGTACTCCCTCCGTTAGTG 59.554 47.826 0.00 0.00 0.00 2.74
2445 6848 2.885135 TGTACTCCCTCCGTTAGTGA 57.115 50.000 0.00 0.00 0.00 3.41
2446 6849 3.377253 TGTACTCCCTCCGTTAGTGAT 57.623 47.619 0.00 0.00 0.00 3.06
2447 6850 3.285484 TGTACTCCCTCCGTTAGTGATC 58.715 50.000 0.00 0.00 0.00 2.92
2448 6851 2.830651 ACTCCCTCCGTTAGTGATCT 57.169 50.000 0.00 0.00 0.00 2.75
2449 6852 3.947612 ACTCCCTCCGTTAGTGATCTA 57.052 47.619 0.00 0.00 0.00 1.98
2450 6853 4.246712 ACTCCCTCCGTTAGTGATCTAA 57.753 45.455 0.00 0.00 34.25 2.10
2451 6854 4.607239 ACTCCCTCCGTTAGTGATCTAAA 58.393 43.478 0.00 0.00 37.81 1.85
2452 6855 4.401837 ACTCCCTCCGTTAGTGATCTAAAC 59.598 45.833 0.00 0.00 37.81 2.01
2453 6856 3.379372 TCCCTCCGTTAGTGATCTAAACG 59.621 47.826 16.01 16.01 37.81 3.60
2454 6857 3.114065 CCTCCGTTAGTGATCTAAACGC 58.886 50.000 16.97 0.00 37.81 4.84
2455 6858 3.181489 CCTCCGTTAGTGATCTAAACGCT 60.181 47.826 16.97 0.00 37.81 5.07
2456 6859 4.025015 TCCGTTAGTGATCTAAACGCTC 57.975 45.455 16.97 0.00 37.81 5.03
2457 6860 3.693085 TCCGTTAGTGATCTAAACGCTCT 59.307 43.478 16.97 0.00 37.81 4.09
2458 6861 4.157289 TCCGTTAGTGATCTAAACGCTCTT 59.843 41.667 16.97 0.00 37.81 2.85
2459 6862 5.355071 TCCGTTAGTGATCTAAACGCTCTTA 59.645 40.000 16.97 3.44 37.81 2.10
2460 6863 6.039047 TCCGTTAGTGATCTAAACGCTCTTAT 59.961 38.462 16.97 0.00 37.81 1.73
2461 6864 7.227314 TCCGTTAGTGATCTAAACGCTCTTATA 59.773 37.037 16.97 1.07 37.81 0.98
2462 6865 8.021973 CCGTTAGTGATCTAAACGCTCTTATAT 58.978 37.037 16.97 0.00 37.81 0.86
2463 6866 9.395707 CGTTAGTGATCTAAACGCTCTTATATT 57.604 33.333 12.48 0.00 37.81 1.28
2476 6879 9.924650 AACGCTCTTATATTAGTTTACATAGGG 57.075 33.333 0.00 0.00 0.00 3.53
2477 6880 9.305555 ACGCTCTTATATTAGTTTACATAGGGA 57.694 33.333 0.00 0.00 0.00 4.20
2478 6881 9.790389 CGCTCTTATATTAGTTTACATAGGGAG 57.210 37.037 0.00 0.00 0.00 4.30
2486 6889 8.728596 ATTAGTTTACATAGGGAGTATGCTCT 57.271 34.615 10.82 0.00 42.26 4.09
2487 6890 9.824216 ATTAGTTTACATAGGGAGTATGCTCTA 57.176 33.333 10.82 0.00 42.26 2.43
2488 6891 9.824216 TTAGTTTACATAGGGAGTATGCTCTAT 57.176 33.333 10.82 2.52 42.26 1.98
2489 6892 8.128322 AGTTTACATAGGGAGTATGCTCTATG 57.872 38.462 10.82 13.07 42.26 2.23
2490 6893 6.531503 TTACATAGGGAGTATGCTCTATGC 57.468 41.667 15.51 0.00 42.26 3.14
2501 6904 2.024176 GCTCTATGCAAAACCTCGGA 57.976 50.000 0.00 0.00 42.31 4.55
2502 6905 2.565841 GCTCTATGCAAAACCTCGGAT 58.434 47.619 0.00 0.00 42.31 4.18
2503 6906 2.545946 GCTCTATGCAAAACCTCGGATC 59.454 50.000 0.00 0.00 42.31 3.36
2504 6907 3.134458 CTCTATGCAAAACCTCGGATCC 58.866 50.000 0.00 0.00 0.00 3.36
2505 6908 2.503765 TCTATGCAAAACCTCGGATCCA 59.496 45.455 13.41 0.00 0.00 3.41
2506 6909 1.755179 ATGCAAAACCTCGGATCCAG 58.245 50.000 13.41 8.30 0.00 3.86
2507 6910 0.322456 TGCAAAACCTCGGATCCAGG 60.322 55.000 21.90 21.90 37.03 4.45
2508 6911 1.657751 GCAAAACCTCGGATCCAGGC 61.658 60.000 22.89 10.28 33.84 4.85
2509 6912 0.035056 CAAAACCTCGGATCCAGGCT 60.035 55.000 22.89 13.03 33.84 4.58
2510 6913 0.253327 AAAACCTCGGATCCAGGCTC 59.747 55.000 22.89 0.00 33.84 4.70
2511 6914 1.627297 AAACCTCGGATCCAGGCTCC 61.627 60.000 22.89 0.00 33.84 4.70
2512 6915 2.123077 CCTCGGATCCAGGCTCCT 60.123 66.667 13.41 0.00 0.00 3.69
2513 6916 1.153989 CCTCGGATCCAGGCTCCTA 59.846 63.158 13.41 0.00 0.00 2.94
2514 6917 0.897863 CCTCGGATCCAGGCTCCTAG 60.898 65.000 13.41 5.87 0.00 3.02
2515 6918 0.111446 CTCGGATCCAGGCTCCTAGA 59.889 60.000 13.41 0.00 29.27 2.43
2516 6919 0.178987 TCGGATCCAGGCTCCTAGAC 60.179 60.000 13.41 0.00 0.00 2.59
2517 6920 1.182385 CGGATCCAGGCTCCTAGACC 61.182 65.000 13.41 0.00 0.00 3.85
2518 6921 1.182385 GGATCCAGGCTCCTAGACCG 61.182 65.000 6.95 0.00 0.00 4.79
2519 6922 1.152440 ATCCAGGCTCCTAGACCGG 60.152 63.158 0.00 0.00 0.00 5.28
2520 6923 1.656092 ATCCAGGCTCCTAGACCGGA 61.656 60.000 9.46 2.39 34.61 5.14
2521 6924 1.381327 CCAGGCTCCTAGACCGGAA 60.381 63.158 9.46 0.00 31.44 4.30
2522 6925 0.760945 CCAGGCTCCTAGACCGGAAT 60.761 60.000 9.46 0.00 31.44 3.01
2523 6926 1.480683 CCAGGCTCCTAGACCGGAATA 60.481 57.143 9.46 0.00 31.44 1.75
2524 6927 2.530701 CAGGCTCCTAGACCGGAATAT 58.469 52.381 9.46 0.00 31.44 1.28
2525 6928 2.232452 CAGGCTCCTAGACCGGAATATG 59.768 54.545 9.46 0.00 31.44 1.78
2526 6929 1.550976 GGCTCCTAGACCGGAATATGG 59.449 57.143 9.46 3.48 31.44 2.74
2527 6930 2.249139 GCTCCTAGACCGGAATATGGT 58.751 52.381 9.46 0.00 44.10 3.55
2528 6931 2.028930 GCTCCTAGACCGGAATATGGTG 60.029 54.545 9.46 5.75 40.63 4.17
2529 6932 3.497332 CTCCTAGACCGGAATATGGTGA 58.503 50.000 9.46 0.00 40.63 4.02
2530 6933 3.228453 TCCTAGACCGGAATATGGTGAC 58.772 50.000 9.46 0.00 40.63 3.67
2531 6934 2.030185 CCTAGACCGGAATATGGTGACG 60.030 54.545 9.46 0.00 40.63 4.35
2532 6935 0.104304 AGACCGGAATATGGTGACGC 59.896 55.000 9.46 0.00 40.63 5.19
2533 6936 1.213094 GACCGGAATATGGTGACGCG 61.213 60.000 9.46 3.53 40.63 6.01
2534 6937 1.227147 CCGGAATATGGTGACGCGT 60.227 57.895 13.85 13.85 0.00 6.01
2535 6938 1.213094 CCGGAATATGGTGACGCGTC 61.213 60.000 31.66 31.66 0.00 5.19
2536 6939 0.248907 CGGAATATGGTGACGCGTCT 60.249 55.000 36.27 20.90 0.00 4.18
2537 6940 1.801395 CGGAATATGGTGACGCGTCTT 60.801 52.381 36.27 22.79 0.00 3.01
2538 6941 1.593006 GGAATATGGTGACGCGTCTTG 59.407 52.381 36.27 0.00 0.00 3.02
2539 6942 1.004927 GAATATGGTGACGCGTCTTGC 60.005 52.381 36.27 25.43 41.47 4.01
2549 6952 3.479269 CGTCTTGCGCCGTTCCTC 61.479 66.667 4.18 0.00 0.00 3.71
2550 6953 2.048127 GTCTTGCGCCGTTCCTCT 60.048 61.111 4.18 0.00 0.00 3.69
2551 6954 2.095252 GTCTTGCGCCGTTCCTCTC 61.095 63.158 4.18 0.00 0.00 3.20
2552 6955 2.048222 CTTGCGCCGTTCCTCTCA 60.048 61.111 4.18 0.00 0.00 3.27
2553 6956 1.448540 CTTGCGCCGTTCCTCTCAT 60.449 57.895 4.18 0.00 0.00 2.90
2554 6957 1.003839 TTGCGCCGTTCCTCTCATT 60.004 52.632 4.18 0.00 0.00 2.57
2555 6958 1.298157 TTGCGCCGTTCCTCTCATTG 61.298 55.000 4.18 0.00 0.00 2.82
2556 6959 2.464459 GCGCCGTTCCTCTCATTGG 61.464 63.158 0.00 0.00 0.00 3.16
2557 6960 1.218047 CGCCGTTCCTCTCATTGGA 59.782 57.895 0.00 0.00 0.00 3.53
2558 6961 0.807667 CGCCGTTCCTCTCATTGGAG 60.808 60.000 0.00 0.00 42.80 3.86
2564 6967 3.376218 CCTCTCATTGGAGGCTTCG 57.624 57.895 7.87 0.00 45.07 3.79
2565 6968 0.539051 CCTCTCATTGGAGGCTTCGT 59.461 55.000 7.87 0.00 45.07 3.85
2566 6969 1.472376 CCTCTCATTGGAGGCTTCGTC 60.472 57.143 7.87 0.00 45.07 4.20
2567 6970 1.480137 CTCTCATTGGAGGCTTCGTCT 59.520 52.381 0.00 0.00 41.69 4.18
2568 6971 1.902508 TCTCATTGGAGGCTTCGTCTT 59.097 47.619 0.00 0.00 41.69 3.01
2569 6972 2.303022 TCTCATTGGAGGCTTCGTCTTT 59.697 45.455 0.00 0.00 41.69 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.937436 AAAGTGAAAGATGAAACCTTACGT 57.063 33.333 0.00 0.00 0.00 3.57
14 15 5.377478 AGGAGGTGGTAAGAAAAGTGAAAG 58.623 41.667 0.00 0.00 0.00 2.62
62 63 1.389555 GGAGCACCGGGGAAAATTAG 58.610 55.000 8.67 0.00 0.00 1.73
142 143 6.598064 GGGCCGTGAATTTATTGCTATATACT 59.402 38.462 0.00 0.00 0.00 2.12
180 181 9.984190 GGAGTAGATAGGTTTTACCATAAGAAG 57.016 37.037 0.00 0.00 41.95 2.85
194 195 2.309458 GGATCGGAGGGAGTAGATAGGT 59.691 54.545 0.00 0.00 0.00 3.08
295 296 0.505655 GGTCAAGTACGTGCGTTGTC 59.494 55.000 3.67 1.84 0.00 3.18
410 1456 7.975616 AGTGATATAATTTTTGGTGACATGCAC 59.024 33.333 10.63 10.63 46.98 4.57
411 1457 8.065473 AGTGATATAATTTTTGGTGACATGCA 57.935 30.769 0.00 0.00 42.32 3.96
526 1582 4.846779 TGGTCCTCTTTGTAATTTGTGC 57.153 40.909 0.00 0.00 0.00 4.57
544 1600 6.067217 AGTTGCTAGTCCTGATTTATTGGT 57.933 37.500 0.00 0.00 0.00 3.67
552 1608 5.810095 AGCTAAAAAGTTGCTAGTCCTGAT 58.190 37.500 0.00 0.00 35.05 2.90
610 1873 1.284982 CTGCCGTCTCAAGTTCCACG 61.285 60.000 0.00 0.00 0.00 4.94
815 2078 0.250209 ACCTTGTGAGCTGTGAGCAG 60.250 55.000 0.00 0.00 45.56 4.24
816 2079 0.250038 GACCTTGTGAGCTGTGAGCA 60.250 55.000 0.00 0.00 45.56 4.26
902 2165 1.900603 CGTACCACGCGCTTATATACG 59.099 52.381 5.73 8.73 33.65 3.06
924 2187 2.067013 GAGCTTCCAAGTGAACGTACC 58.933 52.381 0.00 0.00 0.00 3.34
1497 2773 1.985662 CCTACTGGTACCACCGCCA 60.986 63.158 11.60 0.00 42.58 5.69
1500 2776 1.673808 GCTCCCTACTGGTACCACCG 61.674 65.000 11.60 4.87 42.58 4.94
1506 2782 1.195115 CAAGCTGCTCCCTACTGGTA 58.805 55.000 1.00 0.00 34.77 3.25
1507 2783 0.838122 ACAAGCTGCTCCCTACTGGT 60.838 55.000 1.00 0.00 34.77 4.00
1508 2784 0.107945 GACAAGCTGCTCCCTACTGG 60.108 60.000 1.00 0.00 0.00 4.00
1533 2809 3.800863 TCGTCGACGCTGAGCTCC 61.801 66.667 32.19 0.00 39.60 4.70
1584 2860 4.181578 TCTACGTAGTACTACCGGTGTTC 58.818 47.826 24.06 11.18 45.11 3.18
1586 2862 3.887621 TCTACGTAGTACTACCGGTGT 57.112 47.619 24.06 18.33 45.11 4.16
1635 2916 2.281761 CCTTGCCAACTGCGACCT 60.282 61.111 0.00 0.00 45.60 3.85
1657 2938 3.379057 ACTGTTTCCGAATTTCAAACGGT 59.621 39.130 15.73 15.73 45.71 4.83
1660 2941 5.883328 GGAACTGTTTCCGAATTTCAAAC 57.117 39.130 0.00 5.74 42.20 2.93
1672 2953 1.368850 GTGTGCGCGGAACTGTTTC 60.369 57.895 8.83 0.00 0.00 2.78
1676 2957 4.059459 GACGTGTGCGCGGAACTG 62.059 66.667 8.83 0.00 42.83 3.16
1687 2971 6.513180 AGTAATCATTTCATATCGGACGTGT 58.487 36.000 0.00 0.00 0.00 4.49
1693 2977 8.712363 CAACAGGTAGTAATCATTTCATATCGG 58.288 37.037 0.00 0.00 0.00 4.18
1701 2985 9.295825 TCAAATGTCAACAGGTAGTAATCATTT 57.704 29.630 0.00 0.00 35.80 2.32
1738 3026 0.583438 CATACGCAGTGGCTACATGC 59.417 55.000 2.02 8.61 45.73 4.06
1852 3156 2.674380 GCTGGCCTGGTCAACCTG 60.674 66.667 12.06 0.00 36.82 4.00
1876 3180 3.008813 AGAAAGAAGAGCCTCAGCATTCA 59.991 43.478 0.00 0.00 43.56 2.57
1879 3183 2.839425 AGAGAAAGAAGAGCCTCAGCAT 59.161 45.455 0.00 0.00 43.56 3.79
1880 3184 2.028294 CAGAGAAAGAAGAGCCTCAGCA 60.028 50.000 0.00 0.00 43.56 4.41
1892 3196 0.244994 GTCCGCAGCTCAGAGAAAGA 59.755 55.000 0.00 0.00 0.00 2.52
1900 3204 4.193334 CGATCGGTCCGCAGCTCA 62.193 66.667 7.38 0.00 0.00 4.26
1901 3205 3.815569 CTCGATCGGTCCGCAGCTC 62.816 68.421 16.41 0.00 0.00 4.09
1904 3208 2.024871 GTCTCGATCGGTCCGCAG 59.975 66.667 16.41 3.96 0.00 5.18
1906 3210 4.609247 CGGTCTCGATCGGTCCGC 62.609 72.222 24.08 9.48 39.00 5.54
1912 3216 0.380733 TCATTGACCGGTCTCGATCG 59.619 55.000 33.39 9.36 39.00 3.69
1916 3220 1.534175 GCTAGTCATTGACCGGTCTCG 60.534 57.143 33.39 21.40 32.18 4.04
1918 3222 1.557099 TGCTAGTCATTGACCGGTCT 58.443 50.000 33.39 16.03 32.18 3.85
1933 3237 0.322187 GGAGGCGAAAAGGGTTGCTA 60.322 55.000 0.00 0.00 0.00 3.49
1986 3291 9.656040 ATTTTGACATTAAATTAAGCATGCTCA 57.344 25.926 22.93 11.59 0.00 4.26
2002 3307 9.341078 ACATTAGCAAAGGAAAATTTTGACATT 57.659 25.926 8.47 0.00 37.65 2.71
2015 3320 5.738783 GCTTTGACCAAACATTAGCAAAGGA 60.739 40.000 0.57 0.00 41.29 3.36
2072 3448 3.200825 TGGCAATTCCCAACCTTCAAAAA 59.799 39.130 0.00 0.00 30.32 1.94
2076 3452 2.094100 TTGGCAATTCCCAACCTTCA 57.906 45.000 0.00 0.00 39.85 3.02
2081 3457 3.475575 ACAACATTTGGCAATTCCCAAC 58.524 40.909 0.00 0.00 44.17 3.77
2086 3462 4.379652 ACAAGGACAACATTTGGCAATTC 58.620 39.130 0.00 0.00 41.76 2.17
2104 3480 2.287788 GGCCTGACAATGTGTTGACAAG 60.288 50.000 0.00 0.00 38.99 3.16
2106 3482 1.317613 GGCCTGACAATGTGTTGACA 58.682 50.000 0.00 0.00 37.60 3.58
2155 6558 0.106519 ATATTGCAGAGCCACCACCC 60.107 55.000 0.00 0.00 0.00 4.61
2161 6564 4.585070 GGCCATATTGCAGAGCCA 57.415 55.556 0.00 0.00 43.32 4.75
2169 6572 0.538057 ACCGGAGCATGGCCATATTG 60.538 55.000 20.30 9.52 0.00 1.90
2211 6614 0.866061 CGTCGATACCCGCAACAGAG 60.866 60.000 0.00 0.00 38.37 3.35
2214 6617 2.182284 CCGTCGATACCCGCAACA 59.818 61.111 0.00 0.00 38.37 3.33
2255 6658 1.753368 CTACTAGCTGCAGCCCTCCC 61.753 65.000 34.39 6.88 43.38 4.30
2261 6664 0.463620 AAGCCTCTACTAGCTGCAGC 59.536 55.000 31.53 31.53 39.87 5.25
2275 6678 2.856000 AGCTGACCACCCAAGCCT 60.856 61.111 0.00 0.00 0.00 4.58
2286 6689 0.977395 ACTACCCTGAACCAGCTGAC 59.023 55.000 17.39 6.93 0.00 3.51
2289 6692 2.043252 ACTCTACTACCCTGAACCAGCT 59.957 50.000 0.00 0.00 0.00 4.24
2292 6695 2.176889 GCACTCTACTACCCTGAACCA 58.823 52.381 0.00 0.00 0.00 3.67
2298 6701 0.412244 TGTGGGCACTCTACTACCCT 59.588 55.000 0.00 0.00 43.25 4.34
2299 6702 1.272807 TTGTGGGCACTCTACTACCC 58.727 55.000 0.00 0.00 43.14 3.69
2300 6703 2.696506 GTTTGTGGGCACTCTACTACC 58.303 52.381 0.00 0.00 0.00 3.18
2305 6708 1.373435 CCCGTTTGTGGGCACTCTA 59.627 57.895 0.00 0.00 43.70 2.43
2313 6716 0.673644 AGATTCTCGCCCGTTTGTGG 60.674 55.000 0.00 0.00 0.00 4.17
2325 6728 1.556911 TGGTCCAGAGGCAAGATTCTC 59.443 52.381 0.00 0.00 0.00 2.87
2330 6733 0.842030 ACCATGGTCCAGAGGCAAGA 60.842 55.000 13.00 0.00 0.00 3.02
2339 6742 2.348104 CGACTCCGACCATGGTCCA 61.348 63.158 34.05 21.90 41.76 4.02
2342 6745 3.771160 GCCGACTCCGACCATGGT 61.771 66.667 19.89 19.89 38.22 3.55
2349 6752 2.044555 ATCGTCTTGCCGACTCCGA 61.045 57.895 2.36 0.00 40.08 4.55
2351 6754 0.802607 GACATCGTCTTGCCGACTCC 60.803 60.000 2.36 0.00 40.08 3.85
2352 6755 0.171455 AGACATCGTCTTGCCGACTC 59.829 55.000 2.36 0.00 40.28 3.36
2357 6760 2.531206 GTCTGTAGACATCGTCTTGCC 58.469 52.381 7.14 0.00 40.28 4.52
2372 6775 0.959553 ATGAAGGACACGACGTCTGT 59.040 50.000 14.70 16.05 44.70 3.41
2374 6777 1.244816 TCATGAAGGACACGACGTCT 58.755 50.000 14.70 0.00 44.70 4.18
2384 6787 3.804036 ACAACAACGACTTCATGAAGGA 58.196 40.909 33.11 2.83 42.53 3.36
2398 6801 8.995220 TGAAGAATAGGTACACAATACAACAAC 58.005 33.333 0.00 0.00 0.00 3.32
2399 6802 9.562408 TTGAAGAATAGGTACACAATACAACAA 57.438 29.630 0.00 0.00 0.00 2.83
2400 6803 9.733556 ATTGAAGAATAGGTACACAATACAACA 57.266 29.630 0.00 0.00 0.00 3.33
2413 6816 5.367060 GGAGGGAGTACATTGAAGAATAGGT 59.633 44.000 0.00 0.00 0.00 3.08
2424 6827 3.705051 TCACTAACGGAGGGAGTACATT 58.295 45.455 0.00 0.00 30.24 2.71
2430 6833 4.497674 CGTTTAGATCACTAACGGAGGGAG 60.498 50.000 15.12 0.00 42.35 4.30
2431 6834 3.379372 CGTTTAGATCACTAACGGAGGGA 59.621 47.826 15.12 0.00 43.59 4.20
2432 6835 3.703420 CGTTTAGATCACTAACGGAGGG 58.297 50.000 15.12 0.00 38.18 4.30
2433 6836 3.114065 GCGTTTAGATCACTAACGGAGG 58.886 50.000 20.80 2.79 38.18 4.30
2434 6837 4.030134 AGCGTTTAGATCACTAACGGAG 57.970 45.455 20.80 0.00 38.18 4.63
2435 6838 3.693085 AGAGCGTTTAGATCACTAACGGA 59.307 43.478 20.80 0.00 38.18 4.69
2436 6839 4.030134 AGAGCGTTTAGATCACTAACGG 57.970 45.455 20.80 9.12 38.18 4.44
2437 6840 8.951954 ATATAAGAGCGTTTAGATCACTAACG 57.048 34.615 17.35 17.35 38.18 3.18
2450 6853 9.924650 CCCTATGTAAACTAATATAAGAGCGTT 57.075 33.333 0.00 0.00 0.00 4.84
2451 6854 9.305555 TCCCTATGTAAACTAATATAAGAGCGT 57.694 33.333 0.00 0.00 0.00 5.07
2452 6855 9.790389 CTCCCTATGTAAACTAATATAAGAGCG 57.210 37.037 0.00 0.00 0.00 5.03
2460 6863 9.824216 AGAGCATACTCCCTATGTAAACTAATA 57.176 33.333 0.00 0.00 44.65 0.98
2461 6864 8.728596 AGAGCATACTCCCTATGTAAACTAAT 57.271 34.615 0.00 0.00 44.65 1.73
2462 6865 9.824216 ATAGAGCATACTCCCTATGTAAACTAA 57.176 33.333 0.00 0.00 44.65 2.24
2463 6866 9.244292 CATAGAGCATACTCCCTATGTAAACTA 57.756 37.037 0.00 0.00 44.65 2.24
2464 6867 7.310113 GCATAGAGCATACTCCCTATGTAAACT 60.310 40.741 0.00 0.00 44.65 2.66
2465 6868 6.814146 GCATAGAGCATACTCCCTATGTAAAC 59.186 42.308 0.00 0.00 44.65 2.01
2466 6869 6.936279 GCATAGAGCATACTCCCTATGTAAA 58.064 40.000 0.00 0.00 44.65 2.01
2467 6870 6.531503 GCATAGAGCATACTCCCTATGTAA 57.468 41.667 0.00 0.00 44.65 2.41
2482 6885 2.024176 TCCGAGGTTTTGCATAGAGC 57.976 50.000 0.00 0.00 45.96 4.09
2483 6886 3.134458 GGATCCGAGGTTTTGCATAGAG 58.866 50.000 0.00 0.00 0.00 2.43
2484 6887 2.503765 TGGATCCGAGGTTTTGCATAGA 59.496 45.455 7.39 0.00 0.00 1.98
2485 6888 2.874701 CTGGATCCGAGGTTTTGCATAG 59.125 50.000 7.39 0.00 0.00 2.23
2486 6889 2.421388 CCTGGATCCGAGGTTTTGCATA 60.421 50.000 17.57 0.00 0.00 3.14
2487 6890 1.683011 CCTGGATCCGAGGTTTTGCAT 60.683 52.381 17.57 0.00 0.00 3.96
2488 6891 0.322456 CCTGGATCCGAGGTTTTGCA 60.322 55.000 17.57 0.00 0.00 4.08
2489 6892 1.657751 GCCTGGATCCGAGGTTTTGC 61.658 60.000 23.28 10.83 32.60 3.68
2490 6893 0.035056 AGCCTGGATCCGAGGTTTTG 60.035 55.000 23.28 6.23 32.60 2.44
2491 6894 0.253327 GAGCCTGGATCCGAGGTTTT 59.747 55.000 23.28 13.87 32.60 2.43
2492 6895 1.627297 GGAGCCTGGATCCGAGGTTT 61.627 60.000 16.30 15.65 32.60 3.27
2493 6896 2.066999 GGAGCCTGGATCCGAGGTT 61.067 63.158 16.30 19.84 32.60 3.50
2494 6897 1.656092 TAGGAGCCTGGATCCGAGGT 61.656 60.000 24.24 15.99 43.66 3.85
2495 6898 0.897863 CTAGGAGCCTGGATCCGAGG 60.898 65.000 27.40 20.19 43.66 4.63
2496 6899 0.111446 TCTAGGAGCCTGGATCCGAG 59.889 60.000 28.66 28.66 43.66 4.63
2497 6900 0.178987 GTCTAGGAGCCTGGATCCGA 60.179 60.000 24.24 18.78 43.66 4.55
2498 6901 1.182385 GGTCTAGGAGCCTGGATCCG 61.182 65.000 24.24 12.09 43.66 4.18
2499 6902 1.182385 CGGTCTAGGAGCCTGGATCC 61.182 65.000 23.30 23.30 38.56 3.36
2500 6903 1.182385 CCGGTCTAGGAGCCTGGATC 61.182 65.000 2.64 2.64 36.02 3.36
2501 6904 1.152440 CCGGTCTAGGAGCCTGGAT 60.152 63.158 5.86 0.00 36.02 3.41
2502 6905 1.870941 TTCCGGTCTAGGAGCCTGGA 61.871 60.000 0.00 0.00 41.98 3.86
2503 6906 0.760945 ATTCCGGTCTAGGAGCCTGG 60.761 60.000 0.00 0.00 41.98 4.45
2504 6907 1.996798 TATTCCGGTCTAGGAGCCTG 58.003 55.000 0.00 0.00 41.98 4.85
2505 6908 2.530701 CATATTCCGGTCTAGGAGCCT 58.469 52.381 0.00 0.00 41.98 4.58
2506 6909 1.550976 CCATATTCCGGTCTAGGAGCC 59.449 57.143 0.00 0.00 41.98 4.70
2507 6910 2.028930 CACCATATTCCGGTCTAGGAGC 60.029 54.545 0.00 0.00 41.98 4.70
2508 6911 3.256136 GTCACCATATTCCGGTCTAGGAG 59.744 52.174 0.00 0.00 41.98 3.69
2509 6912 3.228453 GTCACCATATTCCGGTCTAGGA 58.772 50.000 0.00 0.00 38.79 2.94
2510 6913 2.030185 CGTCACCATATTCCGGTCTAGG 60.030 54.545 0.00 0.91 33.25 3.02
2511 6914 2.607282 GCGTCACCATATTCCGGTCTAG 60.607 54.545 0.00 0.00 33.25 2.43
2512 6915 1.338973 GCGTCACCATATTCCGGTCTA 59.661 52.381 0.00 0.00 33.25 2.59
2513 6916 0.104304 GCGTCACCATATTCCGGTCT 59.896 55.000 0.00 0.00 33.25 3.85
2514 6917 1.213094 CGCGTCACCATATTCCGGTC 61.213 60.000 0.00 0.00 33.25 4.79
2515 6918 1.227147 CGCGTCACCATATTCCGGT 60.227 57.895 0.00 0.00 37.16 5.28
2516 6919 1.213094 GACGCGTCACCATATTCCGG 61.213 60.000 33.09 0.00 0.00 5.14
2517 6920 0.248907 AGACGCGTCACCATATTCCG 60.249 55.000 37.85 0.00 0.00 4.30
2518 6921 1.593006 CAAGACGCGTCACCATATTCC 59.407 52.381 37.85 10.59 0.00 3.01
2519 6922 1.004927 GCAAGACGCGTCACCATATTC 60.005 52.381 37.85 15.37 0.00 1.75
2520 6923 1.006832 GCAAGACGCGTCACCATATT 58.993 50.000 37.85 21.09 0.00 1.28
2521 6924 2.677971 GCAAGACGCGTCACCATAT 58.322 52.632 37.85 16.19 0.00 1.78
2522 6925 4.178861 GCAAGACGCGTCACCATA 57.821 55.556 37.85 0.00 0.00 2.74
2534 6937 1.888436 ATGAGAGGAACGGCGCAAGA 61.888 55.000 10.83 0.00 43.02 3.02
2535 6938 1.021390 AATGAGAGGAACGGCGCAAG 61.021 55.000 10.83 4.90 43.44 4.01
2536 6939 1.003839 AATGAGAGGAACGGCGCAA 60.004 52.632 10.83 0.00 0.00 4.85
2537 6940 1.741401 CAATGAGAGGAACGGCGCA 60.741 57.895 10.83 0.00 0.00 6.09
2538 6941 2.464459 CCAATGAGAGGAACGGCGC 61.464 63.158 6.90 0.00 0.00 6.53
2539 6942 0.807667 CTCCAATGAGAGGAACGGCG 60.808 60.000 4.80 4.80 41.42 6.46
2540 6943 3.071580 CTCCAATGAGAGGAACGGC 57.928 57.895 0.00 0.00 41.42 5.68
2547 6950 1.480137 AGACGAAGCCTCCAATGAGAG 59.520 52.381 0.00 0.00 41.42 3.20
2548 6951 1.561643 AGACGAAGCCTCCAATGAGA 58.438 50.000 0.00 0.00 41.42 3.27
2549 6952 2.393271 AAGACGAAGCCTCCAATGAG 57.607 50.000 0.00 0.00 38.42 2.90
2550 6953 2.859165 AAAGACGAAGCCTCCAATGA 57.141 45.000 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.