Multiple sequence alignment - TraesCS3D01G399200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G399200 chr3D 100.000 6892 0 0 1 6892 514261134 514268025 0.000000e+00 12728.0
1 TraesCS3D01G399200 chr3B 94.789 4241 140 38 2273 6445 676611043 676615270 0.000000e+00 6532.0
2 TraesCS3D01G399200 chr3B 96.652 926 28 1 990 1915 676609769 676610691 0.000000e+00 1535.0
3 TraesCS3D01G399200 chr3B 93.843 471 18 5 6429 6892 676615283 676615749 0.000000e+00 699.0
4 TraesCS3D01G399200 chr3B 89.394 462 19 11 521 972 676609034 676609475 7.810000e-154 555.0
5 TraesCS3D01G399200 chr3B 95.760 283 10 2 1914 2195 676610763 676611044 8.150000e-124 455.0
6 TraesCS3D01G399200 chr3B 88.268 358 31 6 2 356 676608458 676608807 1.070000e-112 418.0
7 TraesCS3D01G399200 chr3A 97.185 3020 65 6 957 3966 649019622 649022631 0.000000e+00 5088.0
8 TraesCS3D01G399200 chr3A 96.296 2187 44 12 3959 6120 649022787 649024961 0.000000e+00 3555.0
9 TraesCS3D01G399200 chr3A 91.929 954 48 9 1 948 649018354 649019284 0.000000e+00 1308.0
10 TraesCS3D01G399200 chr3A 89.057 795 36 23 6143 6892 649025113 649025901 0.000000e+00 939.0
11 TraesCS3D01G399200 chr4A 88.372 86 4 4 2194 2274 467263324 467263408 1.580000e-16 99.0
12 TraesCS3D01G399200 chr1B 90.541 74 6 1 2184 2257 156850349 156850421 5.690000e-16 97.1
13 TraesCS3D01G399200 chr1B 97.778 45 1 0 6319 6363 356207722 356207766 2.060000e-10 78.7
14 TraesCS3D01G399200 chr5D 90.278 72 4 3 2187 2257 281024881 281024812 2.650000e-14 91.6
15 TraesCS3D01G399200 chr5D 85.366 82 11 1 2194 2275 133437775 133437855 4.430000e-12 84.2
16 TraesCS3D01G399200 chr2B 94.915 59 2 1 6319 6377 134045504 134045447 2.650000e-14 91.6
17 TraesCS3D01G399200 chr2B 84.884 86 7 6 2194 2274 139072831 139072915 1.590000e-11 82.4
18 TraesCS3D01G399200 chr2B 96.000 50 2 0 6319 6368 765397978 765398027 1.590000e-11 82.4
19 TraesCS3D01G399200 chr1D 92.308 65 3 2 2191 2254 277362518 277362581 2.650000e-14 91.6
20 TraesCS3D01G399200 chr1A 92.308 65 3 2 2191 2254 350017094 350017157 2.650000e-14 91.6
21 TraesCS3D01G399200 chr2D 93.220 59 3 1 6319 6377 82181972 82181915 1.230000e-12 86.1
22 TraesCS3D01G399200 chr7B 97.872 47 1 0 6319 6365 255075448 255075402 1.590000e-11 82.4
23 TraesCS3D01G399200 chr7A 97.872 47 1 0 6319 6365 632520596 632520642 1.590000e-11 82.4
24 TraesCS3D01G399200 chr4B 97.872 47 1 0 6319 6365 53590605 53590651 1.590000e-11 82.4
25 TraesCS3D01G399200 chr7D 83.696 92 8 7 2190 2275 59711289 59711379 5.730000e-11 80.5
26 TraesCS3D01G399200 chr2A 91.525 59 3 2 6319 6377 82346278 82346222 5.730000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G399200 chr3D 514261134 514268025 6891 False 12728.0 12728 100.000000 1 6892 1 chr3D.!!$F1 6891
1 TraesCS3D01G399200 chr3B 676608458 676615749 7291 False 1699.0 6532 93.117667 2 6892 6 chr3B.!!$F1 6890
2 TraesCS3D01G399200 chr3A 649018354 649025901 7547 False 2722.5 5088 93.616750 1 6892 4 chr3A.!!$F1 6891

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
862 968 0.179468 GAAAACCATCCCCGATCCGA 59.821 55.000 0.00 0.0 0.00 4.55 F
902 1008 1.750193 TCCGCCCAATCAAATCTCAC 58.250 50.000 0.00 0.0 0.00 3.51 F
1802 2516 1.480954 AGTGGTAGCTTGGTATCGGTG 59.519 52.381 0.00 0.0 0.00 4.94 F
2165 2953 0.382158 CTGGCATGCTGCTGATTCTG 59.618 55.000 18.92 0.0 44.28 3.02 F
2873 3671 1.154150 GTCCAGACGCTGCAAATGC 60.154 57.895 0.00 0.0 42.50 3.56 F
3553 4352 2.254918 TGTGCTCACGTTGTTGTTTG 57.745 45.000 0.00 0.0 0.00 2.93 F
4928 5912 0.321653 ACCAGAGTTCATTGGACGCC 60.322 55.000 0.00 0.0 37.89 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1740 2454 0.917939 TACATTGCATCACGTACGCG 59.082 50.000 16.72 3.53 44.93 6.01 R
1955 2743 1.069049 ACCATTGAGCAAAGCAACCAC 59.931 47.619 0.00 0.00 0.00 4.16 R
3525 4324 0.819259 ACGTGAGCACATGCAAAGGT 60.819 50.000 6.64 2.79 45.16 3.50 R
3946 4746 3.009723 GCAGTAGCTCATAGCAAAACCA 58.990 45.455 0.00 0.00 45.56 3.67 R
4350 5316 2.711009 TCTTGGACATTTCCTCCACAGT 59.289 45.455 0.00 0.00 43.31 3.55 R
5535 6521 2.432146 AGCATCTACTCGCTCATTTCCA 59.568 45.455 0.00 0.00 31.16 3.53 R
6569 7767 0.248661 CAGCCTCGTGATCCGTGTAG 60.249 60.000 3.97 0.00 37.94 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 4.780815 TGCGGTGAGATTCCAATTCTTAT 58.219 39.130 0.00 0.00 0.00 1.73
32 33 4.816385 TGCGGTGAGATTCCAATTCTTATC 59.184 41.667 0.00 0.00 0.00 1.75
33 34 5.059833 GCGGTGAGATTCCAATTCTTATCT 58.940 41.667 0.00 0.00 0.00 1.98
34 35 5.529060 GCGGTGAGATTCCAATTCTTATCTT 59.471 40.000 0.00 0.00 0.00 2.40
35 36 6.706270 GCGGTGAGATTCCAATTCTTATCTTA 59.294 38.462 0.00 0.00 0.00 2.10
36 37 7.226720 GCGGTGAGATTCCAATTCTTATCTTAA 59.773 37.037 0.00 0.00 0.00 1.85
79 80 3.241530 TGAGACTGCACCCGGCTT 61.242 61.111 0.00 0.00 45.15 4.35
80 81 2.435059 GAGACTGCACCCGGCTTC 60.435 66.667 0.00 0.00 45.15 3.86
81 82 4.379243 AGACTGCACCCGGCTTCG 62.379 66.667 0.00 0.00 45.15 3.79
111 112 3.878778 CCCGATTGATCCAGTTTCTCTT 58.121 45.455 0.00 0.00 0.00 2.85
163 164 3.433173 CCCGAGAATAAACAAGGGTAGGG 60.433 52.174 0.00 0.00 34.36 3.53
164 165 3.433173 CCGAGAATAAACAAGGGTAGGGG 60.433 52.174 0.00 0.00 0.00 4.79
195 196 3.274586 CAGATGTGCATCCGCCGG 61.275 66.667 0.00 0.00 38.58 6.13
224 225 0.890996 CGGCTGGGGATTATGCTTCC 60.891 60.000 0.00 0.00 0.00 3.46
279 287 2.125952 GTTTACCGTCCGTCCCCG 60.126 66.667 0.00 0.00 0.00 5.73
336 344 7.012704 ACGATCTAACTTATCCAGCGTTAACTA 59.987 37.037 3.71 0.00 0.00 2.24
356 364 0.605319 AGATTTGGCGCCAGTCGAAA 60.605 50.000 30.75 21.13 41.67 3.46
439 471 2.165301 CGGAGGCGATCGAACCAAC 61.165 63.158 21.57 9.47 0.00 3.77
442 474 0.672401 GAGGCGATCGAACCAACCAA 60.672 55.000 21.57 0.00 0.00 3.67
443 475 0.673644 AGGCGATCGAACCAACCAAG 60.674 55.000 21.57 0.00 0.00 3.61
444 476 0.953960 GGCGATCGAACCAACCAAGT 60.954 55.000 21.57 0.00 0.00 3.16
581 675 1.016130 ATGCTCTGCAGTTCGTTCGG 61.016 55.000 14.67 0.00 43.65 4.30
583 677 0.388134 GCTCTGCAGTTCGTTCGGTA 60.388 55.000 14.67 0.00 0.00 4.02
628 722 2.978978 AGATGATCCCGAGAGAGAGAGA 59.021 50.000 0.00 0.00 0.00 3.10
862 968 0.179468 GAAAACCATCCCCGATCCGA 59.821 55.000 0.00 0.00 0.00 4.55
902 1008 1.750193 TCCGCCCAATCAAATCTCAC 58.250 50.000 0.00 0.00 0.00 3.51
904 1010 2.094675 CCGCCCAATCAAATCTCACTT 58.905 47.619 0.00 0.00 0.00 3.16
1740 2454 2.508891 CGATCGTTGCGGAGTGCTC 61.509 63.158 7.03 0.00 46.63 4.26
1750 2464 2.175078 GAGTGCTCGCGTACGTGA 59.825 61.111 28.00 28.00 41.18 4.35
1802 2516 1.480954 AGTGGTAGCTTGGTATCGGTG 59.519 52.381 0.00 0.00 0.00 4.94
1811 2525 2.702592 TGGTATCGGTGGGTGAATTC 57.297 50.000 0.00 0.00 0.00 2.17
1839 2553 1.853963 AGTGTGAATCGTCCTAGGCT 58.146 50.000 2.96 0.00 0.00 4.58
1844 2558 1.899814 TGAATCGTCCTAGGCTGTTGT 59.100 47.619 2.96 0.00 0.00 3.32
2163 2951 1.065928 GCTGGCATGCTGCTGATTC 59.934 57.895 18.92 0.00 44.28 2.52
2165 2953 0.382158 CTGGCATGCTGCTGATTCTG 59.618 55.000 18.92 0.00 44.28 3.02
2265 3053 6.528774 GCCTACAAAAATGTATTTTGGTACGG 59.471 38.462 15.61 15.14 40.98 4.02
2340 3129 4.802918 GCAAGAGTTCCTGGTGCTACTTAA 60.803 45.833 0.00 0.00 32.43 1.85
2570 3368 7.939784 ACTCTTACTTTTGTTTCAGGTTCTT 57.060 32.000 0.00 0.00 0.00 2.52
2873 3671 1.154150 GTCCAGACGCTGCAAATGC 60.154 57.895 0.00 0.00 42.50 3.56
3493 4292 6.114089 AGAGTCGATACTGCAGAAGTTACTA 58.886 40.000 23.35 0.00 40.56 1.82
3510 4309 2.536066 ACTAGTGGTATGTGTGGCTCA 58.464 47.619 0.00 0.00 0.00 4.26
3525 4324 5.588648 GTGTGGCTCACTATTTAATGCCTTA 59.411 40.000 12.19 0.00 43.13 2.69
3552 4351 2.796304 CATGTGCTCACGTTGTTGTTT 58.204 42.857 0.00 0.00 0.00 2.83
3553 4352 2.254918 TGTGCTCACGTTGTTGTTTG 57.745 45.000 0.00 0.00 0.00 2.93
3825 4625 7.454260 ACAGGCTTTGTTAAAAATCCTAGAG 57.546 36.000 0.00 0.00 36.31 2.43
3842 4642 5.044030 TCCTAGAGGGAACTGTAAGTGATCT 60.044 44.000 0.00 0.00 42.83 2.75
4019 4982 5.592688 AGTTATGCTTTGTACACAGGTTGTT 59.407 36.000 10.90 0.00 39.91 2.83
4043 5006 3.209410 CATTCCTGAAAAGGGATCTCGG 58.791 50.000 0.00 0.00 32.41 4.63
4350 5316 3.244422 GGTAATAGCATTGATCCACGGGA 60.244 47.826 0.00 0.00 35.55 5.14
4364 5330 0.324943 ACGGGACTGTGGAGGAAATG 59.675 55.000 0.00 0.00 0.00 2.32
4366 5332 1.676014 CGGGACTGTGGAGGAAATGTC 60.676 57.143 0.00 0.00 0.00 3.06
4373 5339 2.711009 TGTGGAGGAAATGTCCAAGAGT 59.289 45.455 4.28 0.00 45.85 3.24
4928 5912 0.321653 ACCAGAGTTCATTGGACGCC 60.322 55.000 0.00 0.00 37.89 5.68
4988 5973 6.491403 AGATCAGCTTGTTCAGGTAAAATGTT 59.509 34.615 0.00 0.00 0.00 2.71
5074 6059 6.808008 TTCAGAATCATGTTCTGTTCTTCC 57.192 37.500 24.59 0.00 44.58 3.46
5206 6191 6.773976 ACAGAACCAAAGAATTCACTTTCA 57.226 33.333 8.44 0.00 37.91 2.69
5246 6231 4.275689 TGTTTAGCCTGAACAATGTGAGTG 59.724 41.667 0.00 0.00 34.32 3.51
5535 6521 1.480137 CAGATCCCTGACGAGAAAGCT 59.520 52.381 0.00 0.00 43.02 3.74
5589 6575 1.749258 GGAGGCCATTGGTTCCGTC 60.749 63.158 5.01 0.00 0.00 4.79
5721 6707 6.877611 ACACAGAAAAGTTACCCTATTGTG 57.122 37.500 0.00 0.00 39.29 3.33
5722 6708 6.362248 ACACAGAAAAGTTACCCTATTGTGT 58.638 36.000 6.69 6.69 41.02 3.72
5781 6767 9.866798 AAAATTGAAATGGAGAAAATAGCTCTC 57.133 29.630 0.00 0.00 38.92 3.20
5813 6808 1.767681 CCTCCTCTAATGCCTGCTCTT 59.232 52.381 0.00 0.00 0.00 2.85
6104 7102 9.713740 CTATAAGCAACATGTTTCTCATTCTTC 57.286 33.333 11.24 0.00 34.09 2.87
6106 7104 4.219288 AGCAACATGTTTCTCATTCTTCCC 59.781 41.667 8.77 0.00 34.09 3.97
6141 7139 2.280552 CCCGGCGGGCTAGCTTATA 61.281 63.158 34.87 0.00 35.35 0.98
6284 7416 4.820897 TGTTTGTCCTGCAGTATCTACAG 58.179 43.478 13.81 0.00 0.00 2.74
6290 7422 3.617540 CTGCAGTATCTACAGGACTCG 57.382 52.381 5.25 0.00 0.00 4.18
6303 7457 4.177026 ACAGGACTCGAATGATTTCTTCG 58.823 43.478 0.00 0.00 45.16 3.79
6364 7525 4.130118 CAAGAATTATGGAACGGAGGGAG 58.870 47.826 0.00 0.00 0.00 4.30
6368 7529 1.335132 TATGGAACGGAGGGAGCACC 61.335 60.000 0.00 0.00 40.67 5.01
6451 7643 1.165907 AATGGCTCACACCACACACG 61.166 55.000 0.00 0.00 44.17 4.49
6481 7677 0.475906 AGTCTCAGCTGGGCAGTTTT 59.524 50.000 15.13 0.00 0.00 2.43
6580 7778 4.201679 CGGCGCCTACACGGATCA 62.202 66.667 26.68 0.00 33.16 2.92
6637 7835 1.285950 CGTTCAGCCGTCACTCTCA 59.714 57.895 0.00 0.00 0.00 3.27
6640 7838 0.532573 TTCAGCCGTCACTCTCATCC 59.467 55.000 0.00 0.00 0.00 3.51
6752 7955 2.130426 GCGAGGGAGAGAGATGGCA 61.130 63.158 0.00 0.00 0.00 4.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 83 1.072159 GATCAATCGGGCCTCCAGG 59.928 63.158 0.84 0.00 38.53 4.45
83 84 1.072159 GGATCAATCGGGCCTCCAG 59.928 63.158 0.84 0.00 0.00 3.86
96 97 3.069586 ACGTGACAAGAGAAACTGGATCA 59.930 43.478 0.00 0.00 0.00 2.92
111 112 1.301637 CACATGGGAGCACGTGACA 60.302 57.895 22.23 12.26 0.00 3.58
163 164 4.804261 GCACATCTGACCAGTATATTCCCC 60.804 50.000 0.00 0.00 0.00 4.81
164 165 4.202357 TGCACATCTGACCAGTATATTCCC 60.202 45.833 0.00 0.00 0.00 3.97
209 210 1.607225 ACCAGGAAGCATAATCCCCA 58.393 50.000 0.00 0.00 37.71 4.96
224 225 2.043227 GAGGGGATGAGTAGGAACCAG 58.957 57.143 0.00 0.00 0.00 4.00
279 287 1.004398 TGCACAATGTCAAACGTCGAC 60.004 47.619 5.18 5.18 0.00 4.20
336 344 0.605319 TTCGACTGGCGCCAAATCTT 60.605 50.000 32.09 12.28 40.61 2.40
439 471 3.047280 TGCCGTGCGCTTACTTGG 61.047 61.111 9.73 2.24 38.78 3.61
442 474 3.041940 GTGTGCCGTGCGCTTACT 61.042 61.111 9.73 0.00 40.03 2.24
443 475 4.424430 CGTGTGCCGTGCGCTTAC 62.424 66.667 9.73 0.00 40.03 2.34
581 675 3.611549 GGAGACGTGACGGAAAGAAATAC 59.388 47.826 10.66 0.00 0.00 1.89
583 677 2.612221 GGGAGACGTGACGGAAAGAAAT 60.612 50.000 10.66 0.00 0.00 2.17
628 722 2.268802 TTGCGTGCTCTCGGAGTCT 61.269 57.895 4.69 0.00 32.25 3.24
666 760 0.399949 TTATCTGTGGGCCCGATCCT 60.400 55.000 19.37 4.06 0.00 3.24
923 1029 2.548480 GGAAGTGGGTGAAGAAGTTTCG 59.452 50.000 0.00 0.00 0.00 3.46
1740 2454 0.917939 TACATTGCATCACGTACGCG 59.082 50.000 16.72 3.53 44.93 6.01
1750 2464 4.202245 AGTCCAACGTACTACATTGCAT 57.798 40.909 0.00 0.00 0.00 3.96
1802 2516 4.022329 CACACTAAAACCCAGAATTCACCC 60.022 45.833 8.44 0.00 0.00 4.61
1811 2525 3.435671 GGACGATTCACACTAAAACCCAG 59.564 47.826 0.00 0.00 0.00 4.45
1839 2553 9.283768 ACACTATTTCACTCAATTATGACAACA 57.716 29.630 0.00 0.00 0.00 3.33
1844 2558 7.223971 GCCGTACACTATTTCACTCAATTATGA 59.776 37.037 0.00 0.00 0.00 2.15
1886 2600 1.112315 AAACCAGGTGCATTTCCGCA 61.112 50.000 0.00 0.00 40.32 5.69
1889 2603 4.600692 ACTTAAAACCAGGTGCATTTCC 57.399 40.909 0.00 0.00 0.00 3.13
1955 2743 1.069049 ACCATTGAGCAAAGCAACCAC 59.931 47.619 0.00 0.00 0.00 4.16
2051 2839 5.608676 TCTACTAGAAACACTGACAGTCG 57.391 43.478 4.74 4.40 0.00 4.18
2163 2951 6.455360 AACCTGTACATGCAATTATTCCAG 57.545 37.500 0.00 0.00 0.00 3.86
2165 2953 8.165239 TGATAACCTGTACATGCAATTATTCC 57.835 34.615 0.00 0.00 0.00 3.01
2381 3170 5.827797 GGATGCATCATAGGTACTTCCAAAA 59.172 40.000 27.25 0.00 41.75 2.44
2570 3368 3.765511 AGTGGTTGTATACGGCTACTGAA 59.234 43.478 12.38 0.00 0.00 3.02
3400 4199 7.672983 AGTAATGAAATACCAGTTCACTGTG 57.327 36.000 0.17 0.17 42.27 3.66
3438 4237 3.139025 ACCTACATATCCAGCCTGCAAAT 59.861 43.478 0.00 0.00 0.00 2.32
3510 4309 7.124147 ACATGCAAAGGTAAGGCATTAAATAGT 59.876 33.333 0.00 0.00 45.34 2.12
3525 4324 0.819259 ACGTGAGCACATGCAAAGGT 60.819 50.000 6.64 2.79 45.16 3.50
3552 4351 7.443879 GGCCAACAAATCTTAAATTTCTTTCCA 59.556 33.333 0.00 0.00 0.00 3.53
3553 4352 7.094805 GGGCCAACAAATCTTAAATTTCTTTCC 60.095 37.037 4.39 0.00 0.00 3.13
3722 4522 8.749026 TGTAGTTATTGTTTACAAACTTCCCA 57.251 30.769 6.41 0.44 39.55 4.37
3946 4746 3.009723 GCAGTAGCTCATAGCAAAACCA 58.990 45.455 0.00 0.00 45.56 3.67
4019 4982 4.141711 CGAGATCCCTTTTCAGGAATGGTA 60.142 45.833 0.00 0.00 44.19 3.25
4238 5204 5.815222 GTGGCCTTTTAGTTGTGAAAACATT 59.185 36.000 3.32 0.00 0.00 2.71
4301 5267 6.889722 TCAACAGGCAGCCTTTATAAAATAGT 59.110 34.615 12.86 0.00 0.00 2.12
4350 5316 2.711009 TCTTGGACATTTCCTCCACAGT 59.289 45.455 0.00 0.00 43.31 3.55
4357 5323 9.927081 AAAATATCATACTCTTGGACATTTCCT 57.073 29.630 0.00 0.00 43.31 3.36
4928 5912 3.378427 GCCAAACTAACTAGAATGGGCAG 59.622 47.826 0.00 0.00 35.03 4.85
5011 5996 3.005791 GGCTTAAACCAGCAACTTCATGT 59.994 43.478 0.00 0.00 42.10 3.21
5017 6002 3.295973 TCAAAGGCTTAAACCAGCAACT 58.704 40.909 0.00 0.00 42.10 3.16
5074 6059 8.122952 GTCGGATCATTTAGTTTATGTGAAAGG 58.877 37.037 0.00 0.00 0.00 3.11
5206 6191 7.451566 AGGCTAAACATTTTCCTGTATTGTCTT 59.548 33.333 0.00 0.00 0.00 3.01
5246 6231 9.162764 TCTATAATCACTTCCAAGTTTTAGTGC 57.837 33.333 0.00 0.00 38.26 4.40
5535 6521 2.432146 AGCATCTACTCGCTCATTTCCA 59.568 45.455 0.00 0.00 31.16 3.53
5689 6675 6.309494 GGGTAACTTTTCTGTGTTTCACAAAC 59.691 38.462 4.21 0.00 44.08 2.93
5781 6767 0.250640 AGAGGAGGCAGTGCAAGTTG 60.251 55.000 18.61 0.00 0.00 3.16
5813 6808 4.312443 CCTCGTTAGTTTCCTGCAAGTTA 58.688 43.478 0.00 0.00 0.00 2.24
6125 7123 0.317479 AACTATAAGCTAGCCCGCCG 59.683 55.000 12.13 0.00 0.00 6.46
6133 7131 5.414454 CACCTTTGCCAACAACTATAAGCTA 59.586 40.000 0.00 0.00 34.87 3.32
6134 7132 4.218417 CACCTTTGCCAACAACTATAAGCT 59.782 41.667 0.00 0.00 34.87 3.74
6135 7133 4.022329 ACACCTTTGCCAACAACTATAAGC 60.022 41.667 0.00 0.00 34.87 3.09
6136 7134 5.705609 ACACCTTTGCCAACAACTATAAG 57.294 39.130 0.00 0.00 34.87 1.73
6137 7135 6.016943 GTGTACACCTTTGCCAACAACTATAA 60.017 38.462 15.42 0.00 34.87 0.98
6138 7136 5.470777 GTGTACACCTTTGCCAACAACTATA 59.529 40.000 15.42 0.00 34.87 1.31
6139 7137 4.277423 GTGTACACCTTTGCCAACAACTAT 59.723 41.667 15.42 0.00 34.87 2.12
6141 7139 2.425668 GTGTACACCTTTGCCAACAACT 59.574 45.455 15.42 0.00 34.87 3.16
6289 7421 3.375299 AGCTTTCCCGAAGAAATCATTCG 59.625 43.478 1.29 1.29 43.50 3.34
6290 7422 4.156739 ACAGCTTTCCCGAAGAAATCATTC 59.843 41.667 1.73 0.00 43.50 2.67
6303 7457 4.965119 ATTTGAATCGTACAGCTTTCCC 57.035 40.909 0.00 0.00 0.00 3.97
6437 7599 1.300931 CCTCCGTGTGTGGTGTGAG 60.301 63.158 0.00 0.00 0.00 3.51
6481 7677 5.308825 GACATCCACCTTTCTTTCTCTTCA 58.691 41.667 0.00 0.00 0.00 3.02
6569 7767 0.248661 CAGCCTCGTGATCCGTGTAG 60.249 60.000 3.97 0.00 37.94 2.74
6571 7769 1.323271 ATCAGCCTCGTGATCCGTGT 61.323 55.000 3.97 0.00 31.05 4.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.