Multiple sequence alignment - TraesCS3D01G397800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G397800 chr3D 100.000 2390 0 0 1 2390 512504372 512506761 0.000000e+00 4414
1 TraesCS3D01G397800 chr3B 91.610 1609 71 15 107 1683 674676944 674678520 0.000000e+00 2165
2 TraesCS3D01G397800 chr3B 92.661 109 3 2 8 111 674671527 674671635 4.110000e-33 152
3 TraesCS3D01G397800 chr3B 75.771 227 44 6 2013 2238 101829038 101828822 1.170000e-18 104
4 TraesCS3D01G397800 chr3A 84.484 1173 122 41 948 2098 648188344 648189478 0.000000e+00 1103
5 TraesCS3D01G397800 chr3A 81.491 389 35 20 472 831 648187434 648187814 3.890000e-73 285
6 TraesCS3D01G397800 chr5A 78.729 362 62 12 1930 2281 582641402 582641758 6.650000e-56 228
7 TraesCS3D01G397800 chr5A 72.857 700 143 29 1722 2390 589018298 589018981 1.870000e-46 196
8 TraesCS3D01G397800 chr7D 77.391 345 68 8 1936 2280 530333853 530334187 1.870000e-46 196
9 TraesCS3D01G397800 chr5D 76.227 387 78 11 1930 2309 462596015 462596394 2.420000e-45 193
10 TraesCS3D01G397800 chr6D 74.730 463 93 16 1930 2390 47665910 47666350 4.060000e-43 185
11 TraesCS3D01G397800 chr6D 75.329 304 58 12 1970 2269 387881347 387881637 1.930000e-26 130
12 TraesCS3D01G397800 chr2B 75.862 348 71 8 1930 2275 164909992 164910328 5.290000e-37 165
13 TraesCS3D01G397800 chr1A 77.258 299 56 7 1958 2247 548686508 548686803 5.290000e-37 165


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G397800 chr3D 512504372 512506761 2389 False 4414 4414 100.0000 1 2390 1 chr3D.!!$F1 2389
1 TraesCS3D01G397800 chr3B 674676944 674678520 1576 False 2165 2165 91.6100 107 1683 1 chr3B.!!$F2 1576
2 TraesCS3D01G397800 chr3A 648187434 648189478 2044 False 694 1103 82.9875 472 2098 2 chr3A.!!$F1 1626

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
305 306 0.033109 TCTACTCCAGCTAGCTGCCA 60.033 55.0 34.82 23.06 44.23 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1722 2200 0.03601 AACTTGCGGCTGTAGATGCT 60.036 50.0 0.0 0.0 0.0 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.009140 GGACGACGCATCATGCAG 58.991 61.111 11.00 5.17 45.36 4.41
18 19 2.322422 GACGACGCATCATGCAGC 59.678 61.111 11.00 0.00 45.36 5.25
19 20 2.434709 ACGACGCATCATGCAGCA 60.435 55.556 11.00 0.00 45.36 4.41
20 21 2.323447 CGACGCATCATGCAGCAG 59.677 61.111 11.00 0.00 45.36 4.24
21 22 2.458610 CGACGCATCATGCAGCAGT 61.459 57.895 11.00 0.00 45.36 4.40
22 23 1.062047 GACGCATCATGCAGCAGTG 59.938 57.895 11.00 0.86 45.36 3.66
46 47 3.703127 GGACGGACCCCTGACCAC 61.703 72.222 0.00 0.00 34.31 4.16
47 48 3.703127 GACGGACCCCTGACCACC 61.703 72.222 0.00 0.00 0.00 4.61
48 49 4.567597 ACGGACCCCTGACCACCA 62.568 66.667 0.00 0.00 0.00 4.17
49 50 4.016706 CGGACCCCTGACCACCAC 62.017 72.222 0.00 0.00 0.00 4.16
50 51 4.016706 GGACCCCTGACCACCACG 62.017 72.222 0.00 0.00 0.00 4.94
51 52 2.920912 GACCCCTGACCACCACGA 60.921 66.667 0.00 0.00 0.00 4.35
52 53 2.923035 ACCCCTGACCACCACGAG 60.923 66.667 0.00 0.00 0.00 4.18
53 54 4.394712 CCCCTGACCACCACGAGC 62.395 72.222 0.00 0.00 0.00 5.03
54 55 4.394712 CCCTGACCACCACGAGCC 62.395 72.222 0.00 0.00 0.00 4.70
55 56 4.394712 CCTGACCACCACGAGCCC 62.395 72.222 0.00 0.00 0.00 5.19
56 57 4.394712 CTGACCACCACGAGCCCC 62.395 72.222 0.00 0.00 0.00 5.80
268 269 1.499056 GCTCAACAGTCACGGCATG 59.501 57.895 0.00 0.00 0.00 4.06
305 306 0.033109 TCTACTCCAGCTAGCTGCCA 60.033 55.000 34.82 23.06 44.23 4.92
323 324 0.689623 CACCCCTGCTTTCTCTGTCT 59.310 55.000 0.00 0.00 0.00 3.41
357 358 1.886313 CATGCAGGTGGAGCGCTAG 60.886 63.158 11.50 0.00 33.85 3.42
358 359 3.746949 ATGCAGGTGGAGCGCTAGC 62.747 63.158 11.50 5.36 45.58 3.42
394 395 4.730613 GCGAAACGTTGCCAGATGATAATT 60.731 41.667 0.00 0.00 0.00 1.40
403 404 3.304257 GCCAGATGATAATTTGAGCACCG 60.304 47.826 0.00 0.00 0.00 4.94
446 447 1.089920 CATCAGCAACTGGTAGTGCC 58.910 55.000 0.00 0.00 37.90 5.01
459 460 2.354805 GGTAGTGCCACTCCTGGTTAAG 60.355 54.545 0.00 0.00 40.17 1.85
466 467 2.159028 CCACTCCTGGTTAAGCTAGCTC 60.159 54.545 19.65 5.90 32.03 4.09
569 576 1.876799 CGAGGCGTATCTCATCTCACT 59.123 52.381 0.00 0.00 33.59 3.41
588 595 4.193334 TCACCTCGCGGCTGATCG 62.193 66.667 6.13 0.00 0.00 3.69
599 606 2.024871 CTGATCGACGCTCCGGTC 59.975 66.667 0.00 1.57 39.91 4.79
601 608 4.609247 GATCGACGCTCCGGTCCG 62.609 72.222 3.60 3.60 33.85 4.79
689 715 4.947147 GCCCGTCCACCAACTGCA 62.947 66.667 0.00 0.00 0.00 4.41
744 781 2.124507 TAACCACAGGCCAGGACAGC 62.125 60.000 14.97 0.00 0.00 4.40
868 947 4.354587 GCAGGCTGCACTTATTAAATGTC 58.645 43.478 33.33 0.00 44.26 3.06
871 950 3.181501 GGCTGCACTTATTAAATGTCGCA 60.182 43.478 0.50 0.00 0.00 5.10
934 1030 2.440599 GGGCAAAGCTCCTTCCCA 59.559 61.111 8.03 0.00 36.96 4.37
1385 1857 4.314440 TGGCAGTGCTGGTCGGTC 62.314 66.667 16.11 0.00 0.00 4.79
1387 1859 4.008933 GCAGTGCTGGTCGGTCCT 62.009 66.667 8.18 0.00 37.07 3.85
1388 1860 2.047844 CAGTGCTGGTCGGTCCTG 60.048 66.667 0.00 0.00 38.06 3.86
1389 1861 2.203640 AGTGCTGGTCGGTCCTGA 60.204 61.111 2.58 0.00 37.33 3.86
1390 1862 2.048127 GTGCTGGTCGGTCCTGAC 60.048 66.667 2.58 5.57 37.33 3.51
1486 1961 5.880054 TTTTCAAGTGGTAGCTAGCAATC 57.120 39.130 26.22 15.31 35.24 2.67
1497 1974 5.931146 GGTAGCTAGCAATCTCTACGTAGTA 59.069 44.000 21.53 11.96 45.11 1.82
1513 1990 3.565482 CGTAGTACCGTATTTGGAGCCTA 59.435 47.826 0.00 0.00 0.00 3.93
1515 1992 2.360165 AGTACCGTATTTGGAGCCTACG 59.640 50.000 0.00 0.00 38.31 3.51
1541 2018 2.483889 CCTCTTAGAATTCCGTGGGAGC 60.484 54.545 0.65 0.00 31.21 4.70
1546 2023 0.528684 GAATTCCGTGGGAGCGAGAG 60.529 60.000 0.00 0.00 31.21 3.20
1569 2046 2.666344 CGTGATGTGTGTGCTGATTTGG 60.666 50.000 0.00 0.00 0.00 3.28
1629 2106 5.522460 GGGCAGATTTGATGTTTGATTGATG 59.478 40.000 0.00 0.00 0.00 3.07
1638 2115 6.926313 TGATGTTTGATTGATGCTCAAATCA 58.074 32.000 1.92 3.54 42.68 2.57
1686 2164 4.034858 GTGTCTCATGCATGATTGGTACTG 59.965 45.833 28.81 14.90 36.02 2.74
1700 2178 7.264947 TGATTGGTACTGATACACACATACAG 58.735 38.462 0.00 0.00 32.40 2.74
1701 2179 5.592104 TGGTACTGATACACACATACAGG 57.408 43.478 0.00 0.00 32.40 4.00
1702 2180 5.020795 TGGTACTGATACACACATACAGGT 58.979 41.667 0.00 0.00 32.40 4.00
1703 2181 6.189133 TGGTACTGATACACACATACAGGTA 58.811 40.000 0.00 0.00 32.40 3.08
1704 2182 6.095860 TGGTACTGATACACACATACAGGTAC 59.904 42.308 0.00 0.00 32.40 3.34
1705 2183 6.095860 GGTACTGATACACACATACAGGTACA 59.904 42.308 0.00 0.00 32.40 2.90
1706 2184 6.208988 ACTGATACACACATACAGGTACAG 57.791 41.667 0.00 0.00 33.57 2.74
1707 2185 5.949952 ACTGATACACACATACAGGTACAGA 59.050 40.000 0.00 0.00 33.57 3.41
1708 2186 6.095580 ACTGATACACACATACAGGTACAGAG 59.904 42.308 0.00 0.00 33.57 3.35
1725 2203 3.959433 AGGTACTCTCACTCGAGCA 57.041 52.632 13.61 0.00 39.30 4.26
1726 2204 2.428544 AGGTACTCTCACTCGAGCAT 57.571 50.000 13.61 0.00 39.30 3.79
1727 2205 2.294074 AGGTACTCTCACTCGAGCATC 58.706 52.381 13.61 0.00 39.30 3.91
1728 2206 2.092646 AGGTACTCTCACTCGAGCATCT 60.093 50.000 13.61 0.00 39.30 2.90
1729 2207 3.134985 AGGTACTCTCACTCGAGCATCTA 59.865 47.826 13.61 0.00 39.30 1.98
1730 2208 3.249080 GGTACTCTCACTCGAGCATCTAC 59.751 52.174 13.61 4.85 39.30 2.59
1750 2242 1.987770 CAGCCGCAAGTTGCTAATTTG 59.012 47.619 24.61 12.02 42.25 2.32
1759 2251 4.236527 AGTTGCTAATTTGGACCCCTAG 57.763 45.455 0.00 0.00 0.00 3.02
1768 2260 3.075005 GACCCCTAGACGCCAGCA 61.075 66.667 0.00 0.00 0.00 4.41
1769 2261 3.077556 ACCCCTAGACGCCAGCAG 61.078 66.667 0.00 0.00 0.00 4.24
1771 2263 2.496817 CCCTAGACGCCAGCAGAC 59.503 66.667 0.00 0.00 0.00 3.51
1774 2266 4.129737 TAGACGCCAGCAGACGCC 62.130 66.667 0.00 0.00 39.83 5.68
1791 2284 4.742201 CCCGTCTGCCGACACTGG 62.742 72.222 9.06 1.75 40.23 4.00
1792 2285 3.991051 CCGTCTGCCGACACTGGT 61.991 66.667 9.06 0.00 40.23 4.00
1804 2297 2.810650 GACACTGGTCGGTCACATATC 58.189 52.381 0.00 0.00 33.68 1.63
1808 2301 4.191544 CACTGGTCGGTCACATATCAAAT 58.808 43.478 0.00 0.00 0.00 2.32
1820 2313 5.572511 TCACATATCAAATTTTGCTTCGCAC 59.427 36.000 4.19 0.00 38.71 5.34
1822 2315 5.574055 ACATATCAAATTTTGCTTCGCACAG 59.426 36.000 4.19 0.00 38.71 3.66
1823 2316 3.435105 TCAAATTTTGCTTCGCACAGT 57.565 38.095 4.19 0.00 38.71 3.55
1829 2323 1.487452 TTGCTTCGCACAGTCGACAC 61.487 55.000 19.50 3.05 38.71 3.67
1846 2340 5.180680 GTCGACACCTTAATTAGCAAACCTT 59.819 40.000 11.55 0.00 0.00 3.50
1851 2345 9.923143 GACACCTTAATTAGCAAACCTTAAATT 57.077 29.630 0.00 0.00 0.00 1.82
1853 2347 9.921637 CACCTTAATTAGCAAACCTTAAATTCA 57.078 29.630 0.00 0.00 0.00 2.57
1877 2371 8.352201 TCATATAAAGACATGCAACCAATTAGC 58.648 33.333 0.00 0.00 0.00 3.09
1878 2372 4.870123 AAAGACATGCAACCAATTAGCA 57.130 36.364 0.00 0.00 43.14 3.49
1879 2373 4.870123 AAGACATGCAACCAATTAGCAA 57.130 36.364 0.00 0.00 42.15 3.91
1880 2374 4.870123 AGACATGCAACCAATTAGCAAA 57.130 36.364 0.00 0.00 42.15 3.68
1881 2375 4.559153 AGACATGCAACCAATTAGCAAAC 58.441 39.130 0.00 0.00 42.15 2.93
1882 2376 3.663025 ACATGCAACCAATTAGCAAACC 58.337 40.909 0.00 0.00 42.15 3.27
1883 2377 3.324556 ACATGCAACCAATTAGCAAACCT 59.675 39.130 0.00 0.00 42.15 3.50
1884 2378 3.658757 TGCAACCAATTAGCAAACCTC 57.341 42.857 0.00 0.00 34.97 3.85
1885 2379 2.961741 TGCAACCAATTAGCAAACCTCA 59.038 40.909 0.00 0.00 34.97 3.86
1886 2380 3.386078 TGCAACCAATTAGCAAACCTCAA 59.614 39.130 0.00 0.00 34.97 3.02
1887 2381 4.141846 TGCAACCAATTAGCAAACCTCAAA 60.142 37.500 0.00 0.00 34.97 2.69
1888 2382 4.996758 GCAACCAATTAGCAAACCTCAAAT 59.003 37.500 0.00 0.00 0.00 2.32
1889 2383 5.469760 GCAACCAATTAGCAAACCTCAAATT 59.530 36.000 0.00 0.00 0.00 1.82
1890 2384 6.347644 GCAACCAATTAGCAAACCTCAAATTC 60.348 38.462 0.00 0.00 0.00 2.17
1891 2385 6.418057 ACCAATTAGCAAACCTCAAATTCA 57.582 33.333 0.00 0.00 0.00 2.57
1892 2386 7.008021 ACCAATTAGCAAACCTCAAATTCAT 57.992 32.000 0.00 0.00 0.00 2.57
1893 2387 8.133024 ACCAATTAGCAAACCTCAAATTCATA 57.867 30.769 0.00 0.00 0.00 2.15
1894 2388 8.253113 ACCAATTAGCAAACCTCAAATTCATAG 58.747 33.333 0.00 0.00 0.00 2.23
1910 2404 7.609760 AATTCATAGAAAGACATGCAACGTA 57.390 32.000 0.00 0.00 0.00 3.57
1915 2409 3.805422 AGAAAGACATGCAACGTAAACGA 59.195 39.130 9.86 0.00 43.02 3.85
1921 2415 3.242349 ACATGCAACGTAAACGAAAACGA 60.242 39.130 9.86 0.00 41.55 3.85
1924 2418 3.001026 TGCAACGTAAACGAAAACGATGA 59.999 39.130 9.86 5.30 42.38 2.92
1927 2421 5.114423 GCAACGTAAACGAAAACGATGAAAT 59.886 36.000 9.86 0.00 42.38 2.17
1956 2481 7.068103 TCGGGCTATCAAAATTTGACATGTTAT 59.932 33.333 10.91 0.00 43.48 1.89
1975 2500 9.723447 CATGTTATATCTTCGTACTAGCTATGG 57.277 37.037 0.00 0.00 0.00 2.74
1980 2505 6.811253 ATCTTCGTACTAGCTATGGAGAAG 57.189 41.667 16.51 16.51 30.75 2.85
2004 2529 0.394216 TCCATGATTGTCCTTGCCCG 60.394 55.000 0.00 0.00 0.00 6.13
2008 2533 2.046314 ATTGTCCTTGCCCGTCCG 60.046 61.111 0.00 0.00 0.00 4.79
2009 2534 2.515996 GATTGTCCTTGCCCGTCCGA 62.516 60.000 0.00 0.00 0.00 4.55
2010 2535 2.521958 ATTGTCCTTGCCCGTCCGAG 62.522 60.000 0.00 0.00 0.00 4.63
2030 2555 1.227002 GCCCTTACCGCTCTTCTCG 60.227 63.158 0.00 0.00 0.00 4.04
2062 2587 3.000476 CGCTCGAAAATGCAAAATGGATG 60.000 43.478 0.00 0.00 0.00 3.51
2074 2599 3.870538 AAATGGATGCAGCCAGATCTA 57.129 42.857 29.74 4.04 42.15 1.98
2081 2606 0.741326 GCAGCCAGATCTACTCGTCA 59.259 55.000 0.00 0.00 0.00 4.35
2082 2607 1.339610 GCAGCCAGATCTACTCGTCAT 59.660 52.381 0.00 0.00 0.00 3.06
2084 2609 1.876799 AGCCAGATCTACTCGTCATCG 59.123 52.381 0.00 0.00 38.55 3.84
2087 2612 2.224549 CCAGATCTACTCGTCATCGGAC 59.775 54.545 0.00 0.00 40.77 4.79
2094 2619 2.278206 CGTCATCGGACCTGAGCG 60.278 66.667 0.00 0.00 41.13 5.03
2098 2623 2.043852 ATCGGACCTGAGCGACCT 60.044 61.111 0.00 0.00 0.00 3.85
2099 2624 2.418910 ATCGGACCTGAGCGACCTG 61.419 63.158 0.00 0.00 0.00 4.00
2100 2625 4.803426 CGGACCTGAGCGACCTGC 62.803 72.222 0.00 0.00 46.98 4.85
2109 2634 3.775654 GCGACCTGCCACTAGCCT 61.776 66.667 0.00 0.00 42.71 4.58
2110 2635 2.982130 CGACCTGCCACTAGCCTT 59.018 61.111 0.00 0.00 42.71 4.35
2111 2636 1.448540 CGACCTGCCACTAGCCTTG 60.449 63.158 0.00 0.00 42.71 3.61
2112 2637 1.679898 GACCTGCCACTAGCCTTGT 59.320 57.895 0.00 0.00 42.71 3.16
2113 2638 0.036875 GACCTGCCACTAGCCTTGTT 59.963 55.000 0.00 0.00 42.71 2.83
2114 2639 0.036875 ACCTGCCACTAGCCTTGTTC 59.963 55.000 0.00 0.00 42.71 3.18
2115 2640 0.326264 CCTGCCACTAGCCTTGTTCT 59.674 55.000 0.00 0.00 42.71 3.01
2116 2641 1.677217 CCTGCCACTAGCCTTGTTCTC 60.677 57.143 0.00 0.00 42.71 2.87
2117 2642 0.324943 TGCCACTAGCCTTGTTCTCC 59.675 55.000 0.00 0.00 42.71 3.71
2118 2643 0.615850 GCCACTAGCCTTGTTCTCCT 59.384 55.000 0.00 0.00 34.35 3.69
2119 2644 1.003696 GCCACTAGCCTTGTTCTCCTT 59.996 52.381 0.00 0.00 34.35 3.36
2120 2645 2.553247 GCCACTAGCCTTGTTCTCCTTT 60.553 50.000 0.00 0.00 34.35 3.11
2121 2646 3.756117 CCACTAGCCTTGTTCTCCTTTT 58.244 45.455 0.00 0.00 0.00 2.27
2122 2647 4.145052 CCACTAGCCTTGTTCTCCTTTTT 58.855 43.478 0.00 0.00 0.00 1.94
2123 2648 4.022849 CCACTAGCCTTGTTCTCCTTTTTG 60.023 45.833 0.00 0.00 0.00 2.44
2124 2649 4.022849 CACTAGCCTTGTTCTCCTTTTTGG 60.023 45.833 0.00 0.00 37.10 3.28
2125 2650 2.319844 AGCCTTGTTCTCCTTTTTGGG 58.680 47.619 0.00 0.00 36.20 4.12
2126 2651 1.270305 GCCTTGTTCTCCTTTTTGGGC 60.270 52.381 0.00 0.00 36.20 5.36
2127 2652 1.000274 CCTTGTTCTCCTTTTTGGGCG 60.000 52.381 0.00 0.00 36.20 6.13
2128 2653 1.000274 CTTGTTCTCCTTTTTGGGCGG 60.000 52.381 0.00 0.00 36.20 6.13
2129 2654 0.183971 TGTTCTCCTTTTTGGGCGGA 59.816 50.000 0.00 0.00 36.20 5.54
2130 2655 1.324383 GTTCTCCTTTTTGGGCGGAA 58.676 50.000 0.00 0.00 36.20 4.30
2131 2656 1.269723 GTTCTCCTTTTTGGGCGGAAG 59.730 52.381 0.00 0.00 36.20 3.46
2132 2657 0.476771 TCTCCTTTTTGGGCGGAAGT 59.523 50.000 0.00 0.00 36.20 3.01
2133 2658 0.881796 CTCCTTTTTGGGCGGAAGTC 59.118 55.000 0.00 0.00 36.20 3.01
2144 2669 2.668632 GGAAGTCCGACCATGGCA 59.331 61.111 13.04 0.00 0.00 4.92
2145 2670 1.745489 GGAAGTCCGACCATGGCAC 60.745 63.158 13.04 5.49 0.00 5.01
2146 2671 2.047274 AAGTCCGACCATGGCACG 60.047 61.111 20.36 20.36 0.00 5.34
2147 2672 3.605749 AAGTCCGACCATGGCACGG 62.606 63.158 32.06 32.06 46.71 4.94
2151 2676 4.386951 CGACCATGGCACGGACCA 62.387 66.667 13.04 0.75 45.82 4.02
2152 2677 2.746277 GACCATGGCACGGACCAC 60.746 66.667 13.04 0.00 44.17 4.16
2153 2678 4.344865 ACCATGGCACGGACCACC 62.345 66.667 13.04 0.00 44.17 4.61
2163 2688 4.415783 GGACCACCCGATTTTGCT 57.584 55.556 0.00 0.00 0.00 3.91
2164 2689 1.883021 GGACCACCCGATTTTGCTG 59.117 57.895 0.00 0.00 0.00 4.41
2165 2690 0.893727 GGACCACCCGATTTTGCTGT 60.894 55.000 0.00 0.00 0.00 4.40
2166 2691 0.521735 GACCACCCGATTTTGCTGTC 59.478 55.000 0.00 0.00 0.00 3.51
2167 2692 1.234615 ACCACCCGATTTTGCTGTCG 61.235 55.000 0.00 0.00 37.58 4.35
2172 2697 2.441023 CGATTTTGCTGTCGGTCGA 58.559 52.632 0.00 0.00 34.39 4.20
2173 2698 0.366871 CGATTTTGCTGTCGGTCGAG 59.633 55.000 0.00 0.00 34.39 4.04
2174 2699 0.721718 GATTTTGCTGTCGGTCGAGG 59.278 55.000 0.00 0.00 0.00 4.63
2175 2700 0.673644 ATTTTGCTGTCGGTCGAGGG 60.674 55.000 0.00 0.00 0.00 4.30
2176 2701 3.876589 TTTGCTGTCGGTCGAGGGC 62.877 63.158 9.41 9.41 0.00 5.19
2194 2719 4.389576 GCGCGTGTTTCCCTGCTG 62.390 66.667 8.43 0.00 0.00 4.41
2195 2720 4.389576 CGCGTGTTTCCCTGCTGC 62.390 66.667 0.00 0.00 0.00 5.25
2196 2721 2.980233 GCGTGTTTCCCTGCTGCT 60.980 61.111 0.00 0.00 0.00 4.24
2197 2722 2.949106 CGTGTTTCCCTGCTGCTG 59.051 61.111 0.00 0.00 0.00 4.41
2198 2723 2.647297 GTGTTTCCCTGCTGCTGC 59.353 61.111 8.89 8.89 40.20 5.25
2199 2724 1.900498 GTGTTTCCCTGCTGCTGCT 60.900 57.895 17.00 0.00 40.48 4.24
2200 2725 1.152694 TGTTTCCCTGCTGCTGCTT 60.153 52.632 17.00 0.00 40.48 3.91
2201 2726 1.174712 TGTTTCCCTGCTGCTGCTTC 61.175 55.000 17.00 0.00 40.48 3.86
2202 2727 0.892814 GTTTCCCTGCTGCTGCTTCT 60.893 55.000 17.00 0.00 40.48 2.85
2203 2728 0.178981 TTTCCCTGCTGCTGCTTCTT 60.179 50.000 17.00 0.00 40.48 2.52
2204 2729 0.178981 TTCCCTGCTGCTGCTTCTTT 60.179 50.000 17.00 0.00 40.48 2.52
2205 2730 0.892358 TCCCTGCTGCTGCTTCTTTG 60.892 55.000 17.00 0.25 40.48 2.77
2206 2731 1.585006 CCTGCTGCTGCTTCTTTGG 59.415 57.895 17.00 5.71 40.48 3.28
2207 2732 1.585006 CTGCTGCTGCTTCTTTGGG 59.415 57.895 17.00 0.00 40.48 4.12
2208 2733 0.892358 CTGCTGCTGCTTCTTTGGGA 60.892 55.000 17.00 0.00 40.48 4.37
2209 2734 0.251474 TGCTGCTGCTTCTTTGGGAT 60.251 50.000 17.00 0.00 40.48 3.85
2210 2735 0.172803 GCTGCTGCTTCTTTGGGATG 59.827 55.000 8.53 0.00 36.03 3.51
2211 2736 0.172803 CTGCTGCTTCTTTGGGATGC 59.827 55.000 0.00 0.00 42.98 3.91
2212 2737 1.138247 GCTGCTTCTTTGGGATGCG 59.862 57.895 0.00 0.00 44.81 4.73
2213 2738 1.805254 CTGCTTCTTTGGGATGCGG 59.195 57.895 0.00 0.00 44.81 5.69
2214 2739 1.660560 CTGCTTCTTTGGGATGCGGG 61.661 60.000 0.00 0.00 44.81 6.13
2215 2740 3.068729 GCTTCTTTGGGATGCGGGC 62.069 63.158 0.00 0.00 35.83 6.13
2216 2741 1.678635 CTTCTTTGGGATGCGGGCA 60.679 57.895 0.00 0.00 0.00 5.36
2217 2742 1.937546 CTTCTTTGGGATGCGGGCAC 61.938 60.000 0.00 0.00 0.00 5.01
2218 2743 3.814268 CTTTGGGATGCGGGCACG 61.814 66.667 2.50 2.50 44.63 5.34
2231 2756 2.514824 GCACGGATGGCTTCCTCC 60.515 66.667 16.47 2.43 42.99 4.30
2232 2757 3.036429 GCACGGATGGCTTCCTCCT 62.036 63.158 16.47 0.00 42.99 3.69
2233 2758 1.144936 CACGGATGGCTTCCTCCTC 59.855 63.158 16.47 0.00 42.99 3.71
2234 2759 2.066999 ACGGATGGCTTCCTCCTCC 61.067 63.158 16.47 0.00 42.99 4.30
2235 2760 2.825264 GGATGGCTTCCTCCTCCG 59.175 66.667 11.96 0.00 41.78 4.63
2236 2761 2.110006 GATGGCTTCCTCCTCCGC 59.890 66.667 0.00 0.00 0.00 5.54
2237 2762 3.798954 GATGGCTTCCTCCTCCGCG 62.799 68.421 0.00 0.00 0.00 6.46
2241 2766 4.521062 CTTCCTCCTCCGCGGCAG 62.521 72.222 23.51 18.38 0.00 4.85
2282 2807 4.652131 TCCGCCACCGCCATGTTT 62.652 61.111 0.00 0.00 0.00 2.83
2283 2808 4.418401 CCGCCACCGCCATGTTTG 62.418 66.667 0.00 0.00 0.00 2.93
2284 2809 4.418401 CGCCACCGCCATGTTTGG 62.418 66.667 0.00 0.00 46.66 3.28
2293 2818 1.004679 CCATGTTTGGCACCAAGGC 60.005 57.895 1.79 1.19 44.50 4.35
2300 2825 3.050275 GGCACCAAGGCGTGTCTC 61.050 66.667 0.00 0.00 35.44 3.36
2301 2826 3.414700 GCACCAAGGCGTGTCTCG 61.415 66.667 0.00 0.00 43.12 4.04
2302 2827 2.738521 CACCAAGGCGTGTCTCGG 60.739 66.667 0.00 0.00 40.26 4.63
2318 2843 2.666207 GGCACACCGGGTCATGTA 59.334 61.111 6.32 0.00 0.00 2.29
2319 2844 1.449601 GGCACACCGGGTCATGTAG 60.450 63.158 6.32 0.00 0.00 2.74
2320 2845 1.449601 GCACACCGGGTCATGTAGG 60.450 63.158 6.32 0.00 0.00 3.18
2321 2846 1.895020 GCACACCGGGTCATGTAGGA 61.895 60.000 6.32 0.00 0.00 2.94
2322 2847 0.108329 CACACCGGGTCATGTAGGAC 60.108 60.000 6.32 0.00 37.06 3.85
2323 2848 0.252103 ACACCGGGTCATGTAGGACT 60.252 55.000 6.32 0.00 37.91 3.85
2324 2849 0.460311 CACCGGGTCATGTAGGACTC 59.540 60.000 6.32 0.00 37.91 3.36
2325 2850 0.040646 ACCGGGTCATGTAGGACTCA 59.959 55.000 6.32 0.00 38.20 3.41
2326 2851 1.343075 ACCGGGTCATGTAGGACTCAT 60.343 52.381 6.32 0.00 38.20 2.90
2327 2852 2.091499 ACCGGGTCATGTAGGACTCATA 60.091 50.000 6.32 0.00 38.20 2.15
2328 2853 2.296471 CCGGGTCATGTAGGACTCATAC 59.704 54.545 0.00 0.00 38.20 2.39
2329 2854 3.223435 CGGGTCATGTAGGACTCATACT 58.777 50.000 2.73 0.00 38.20 2.12
2330 2855 3.253677 CGGGTCATGTAGGACTCATACTC 59.746 52.174 2.73 0.00 38.20 2.59
2331 2856 3.574826 GGGTCATGTAGGACTCATACTCC 59.425 52.174 2.73 1.17 38.20 3.85
2332 2857 3.253677 GGTCATGTAGGACTCATACTCCG 59.746 52.174 2.73 0.00 37.91 4.63
2333 2858 4.135306 GTCATGTAGGACTCATACTCCGA 58.865 47.826 2.73 0.00 34.92 4.55
2334 2859 4.762765 GTCATGTAGGACTCATACTCCGAT 59.237 45.833 2.73 0.00 34.92 4.18
2335 2860 4.762251 TCATGTAGGACTCATACTCCGATG 59.238 45.833 2.73 0.00 32.45 3.84
2336 2861 3.487372 TGTAGGACTCATACTCCGATGG 58.513 50.000 2.73 0.00 32.45 3.51
2337 2862 3.137728 TGTAGGACTCATACTCCGATGGA 59.862 47.826 2.73 0.00 32.45 3.41
2338 2863 3.534357 AGGACTCATACTCCGATGGAT 57.466 47.619 0.00 0.00 32.45 3.41
2339 2864 3.426615 AGGACTCATACTCCGATGGATC 58.573 50.000 0.00 0.00 32.45 3.36
2340 2865 3.157881 GGACTCATACTCCGATGGATCA 58.842 50.000 0.00 0.00 0.00 2.92
2341 2866 3.192422 GGACTCATACTCCGATGGATCAG 59.808 52.174 0.00 0.00 0.00 2.90
2342 2867 4.075682 GACTCATACTCCGATGGATCAGA 58.924 47.826 0.00 0.00 0.00 3.27
2343 2868 4.078537 ACTCATACTCCGATGGATCAGAG 58.921 47.826 0.00 0.00 37.36 3.35
2344 2869 4.202514 ACTCATACTCCGATGGATCAGAGA 60.203 45.833 6.84 0.00 35.43 3.10
2345 2870 4.928263 TCATACTCCGATGGATCAGAGAT 58.072 43.478 6.84 0.00 35.43 2.75
2346 2871 4.704057 TCATACTCCGATGGATCAGAGATG 59.296 45.833 6.84 6.48 35.43 2.90
2347 2872 2.246469 ACTCCGATGGATCAGAGATGG 58.754 52.381 6.84 0.00 35.43 3.51
2348 2873 1.549620 CTCCGATGGATCAGAGATGGG 59.450 57.143 0.00 0.00 34.07 4.00
2349 2874 0.612229 CCGATGGATCAGAGATGGGG 59.388 60.000 0.00 0.00 0.00 4.96
2350 2875 1.637338 CGATGGATCAGAGATGGGGA 58.363 55.000 0.00 0.00 0.00 4.81
2351 2876 1.549620 CGATGGATCAGAGATGGGGAG 59.450 57.143 0.00 0.00 0.00 4.30
2352 2877 1.907936 GATGGATCAGAGATGGGGAGG 59.092 57.143 0.00 0.00 0.00 4.30
2353 2878 0.765903 TGGATCAGAGATGGGGAGGC 60.766 60.000 0.00 0.00 0.00 4.70
2354 2879 0.473501 GGATCAGAGATGGGGAGGCT 60.474 60.000 0.00 0.00 0.00 4.58
2355 2880 1.203237 GGATCAGAGATGGGGAGGCTA 60.203 57.143 0.00 0.00 0.00 3.93
2356 2881 1.899142 GATCAGAGATGGGGAGGCTAC 59.101 57.143 0.00 0.00 0.00 3.58
2357 2882 0.105453 TCAGAGATGGGGAGGCTACC 60.105 60.000 7.44 7.44 0.00 3.18
2358 2883 1.152440 AGAGATGGGGAGGCTACCG 60.152 63.158 10.33 0.00 0.00 4.02
2359 2884 2.122813 AGATGGGGAGGCTACCGG 60.123 66.667 10.33 0.00 0.00 5.28
2360 2885 2.122989 GATGGGGAGGCTACCGGA 60.123 66.667 9.46 0.00 0.00 5.14
2361 2886 2.446036 ATGGGGAGGCTACCGGAC 60.446 66.667 9.46 0.00 0.00 4.79
2362 2887 4.791069 TGGGGAGGCTACCGGACC 62.791 72.222 9.46 6.64 0.00 4.46
2363 2888 4.791069 GGGGAGGCTACCGGACCA 62.791 72.222 9.46 0.00 0.00 4.02
2364 2889 2.446036 GGGAGGCTACCGGACCAT 60.446 66.667 9.46 0.00 0.00 3.55
2365 2890 2.808206 GGGAGGCTACCGGACCATG 61.808 68.421 9.46 0.00 0.00 3.66
2366 2891 1.760875 GGAGGCTACCGGACCATGA 60.761 63.158 9.46 0.00 0.00 3.07
2367 2892 1.122019 GGAGGCTACCGGACCATGAT 61.122 60.000 9.46 0.00 0.00 2.45
2368 2893 1.629043 GAGGCTACCGGACCATGATA 58.371 55.000 9.46 0.00 0.00 2.15
2369 2894 2.180276 GAGGCTACCGGACCATGATAT 58.820 52.381 9.46 0.00 0.00 1.63
2370 2895 2.166664 GAGGCTACCGGACCATGATATC 59.833 54.545 9.46 0.00 0.00 1.63
2371 2896 1.207329 GGCTACCGGACCATGATATCC 59.793 57.143 9.46 0.00 0.00 2.59
2372 2897 1.899814 GCTACCGGACCATGATATCCA 59.100 52.381 9.46 0.00 34.35 3.41
2373 2898 2.093973 GCTACCGGACCATGATATCCAG 60.094 54.545 9.46 0.00 34.35 3.86
2374 2899 0.687354 ACCGGACCATGATATCCAGC 59.313 55.000 9.46 0.00 34.35 4.85
2375 2900 0.036010 CCGGACCATGATATCCAGCC 60.036 60.000 0.00 0.00 34.35 4.85
2376 2901 0.036010 CGGACCATGATATCCAGCCC 60.036 60.000 0.00 0.00 34.35 5.19
2377 2902 1.366319 GGACCATGATATCCAGCCCT 58.634 55.000 0.00 0.00 34.87 5.19
2378 2903 1.004044 GGACCATGATATCCAGCCCTG 59.996 57.143 0.00 0.00 34.87 4.45
2379 2904 1.980765 GACCATGATATCCAGCCCTGA 59.019 52.381 0.00 0.00 0.00 3.86
2380 2905 2.373169 GACCATGATATCCAGCCCTGAA 59.627 50.000 0.00 0.00 0.00 3.02
2381 2906 2.374504 ACCATGATATCCAGCCCTGAAG 59.625 50.000 0.00 0.00 0.00 3.02
2382 2907 2.290768 CCATGATATCCAGCCCTGAAGG 60.291 54.545 0.00 0.00 39.47 3.46
2383 2908 2.494888 TGATATCCAGCCCTGAAGGA 57.505 50.000 0.00 0.00 38.24 3.36
2384 2909 2.995746 TGATATCCAGCCCTGAAGGAT 58.004 47.619 0.00 0.00 44.09 3.24
2385 2910 2.909006 TGATATCCAGCCCTGAAGGATC 59.091 50.000 0.00 0.00 41.11 3.36
2386 2911 1.734655 TATCCAGCCCTGAAGGATCC 58.265 55.000 2.48 2.48 41.11 3.36
2387 2912 1.414061 ATCCAGCCCTGAAGGATCCG 61.414 60.000 5.98 0.00 37.61 4.18
2388 2913 2.066393 CCAGCCCTGAAGGATCCGA 61.066 63.158 5.98 0.00 38.24 4.55
2389 2914 1.445095 CAGCCCTGAAGGATCCGAG 59.555 63.158 5.98 3.81 38.24 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.104331 GGCACTGCTGCATGATGC 59.896 61.111 19.53 19.53 46.28 3.91
8 9 2.407616 CGGCACTGCTGCATGATG 59.592 61.111 1.31 3.51 46.28 3.07
9 10 2.827190 CCGGCACTGCTGCATGAT 60.827 61.111 1.31 0.00 46.28 2.45
29 30 3.703127 GTGGTCAGGGGTCCGTCC 61.703 72.222 0.00 0.00 0.00 4.79
30 31 3.703127 GGTGGTCAGGGGTCCGTC 61.703 72.222 0.00 0.00 0.00 4.79
31 32 4.567597 TGGTGGTCAGGGGTCCGT 62.568 66.667 0.00 0.00 0.00 4.69
32 33 4.016706 GTGGTGGTCAGGGGTCCG 62.017 72.222 0.00 0.00 0.00 4.79
33 34 4.016706 CGTGGTGGTCAGGGGTCC 62.017 72.222 0.00 0.00 0.00 4.46
34 35 2.920912 TCGTGGTGGTCAGGGGTC 60.921 66.667 0.00 0.00 32.53 4.46
35 36 2.923035 CTCGTGGTGGTCAGGGGT 60.923 66.667 0.00 0.00 32.53 4.95
36 37 4.394712 GCTCGTGGTGGTCAGGGG 62.395 72.222 0.00 0.00 35.00 4.79
37 38 4.394712 GGCTCGTGGTGGTCAGGG 62.395 72.222 0.00 0.00 32.53 4.45
38 39 4.394712 GGGCTCGTGGTGGTCAGG 62.395 72.222 0.00 0.00 0.00 3.86
39 40 4.394712 GGGGCTCGTGGTGGTCAG 62.395 72.222 0.00 0.00 0.00 3.51
190 191 4.156008 ACAAACAAAAAGAGAGAAGCGTGT 59.844 37.500 0.00 0.00 0.00 4.49
191 192 4.662145 ACAAACAAAAAGAGAGAAGCGTG 58.338 39.130 0.00 0.00 0.00 5.34
232 233 1.714414 CGAGTGACTAGACCGGACG 59.286 63.158 9.46 0.00 0.00 4.79
237 238 1.540267 TGTTGAGCGAGTGACTAGACC 59.460 52.381 0.00 0.00 0.00 3.85
268 269 9.063615 TGGAGTAGAAATTGTTTCTCTTTTACC 57.936 33.333 8.11 6.28 46.62 2.85
297 298 2.484287 GAAAGCAGGGGTGGCAGCTA 62.484 60.000 17.16 0.00 36.07 3.32
305 306 0.689623 CAGACAGAGAAAGCAGGGGT 59.310 55.000 0.00 0.00 0.00 4.95
360 361 3.861263 GTTTCGCCGGCCGCTTAG 61.861 66.667 22.85 7.29 36.73 2.18
371 372 0.447801 ATCATCTGGCAACGTTTCGC 59.552 50.000 0.00 0.00 42.51 4.70
394 395 2.202946 TTGTGACGCGGTGCTCAA 60.203 55.556 12.47 9.95 0.00 3.02
446 447 2.480416 CGAGCTAGCTTAACCAGGAGTG 60.480 54.545 20.42 0.00 0.00 3.51
459 460 1.082627 GACCGTCGATCGAGCTAGC 60.083 63.158 20.09 6.62 42.86 3.42
502 503 1.133869 GGCGCATTTGACCACGTAC 59.866 57.895 10.83 0.00 0.00 3.67
503 504 2.384309 CGGCGCATTTGACCACGTA 61.384 57.895 10.83 0.00 0.00 3.57
504 505 3.722295 CGGCGCATTTGACCACGT 61.722 61.111 10.83 0.00 0.00 4.49
554 561 4.133820 AGGTGAGAGTGAGATGAGATACG 58.866 47.826 0.00 0.00 0.00 3.06
608 615 4.760047 ATGTCCCGCCAGCGACAC 62.760 66.667 14.67 9.77 42.83 3.67
609 616 4.758251 CATGTCCCGCCAGCGACA 62.758 66.667 14.67 11.26 42.83 4.35
689 715 2.048127 GGTCGCTTTCCGCAGACT 60.048 61.111 0.00 0.00 39.98 3.24
744 781 1.833434 TTCACCAGCGGCGTTTTACG 61.833 55.000 9.37 0.00 45.88 3.18
868 947 1.521010 CTCTCACTGCCTGGATGCG 60.521 63.158 0.00 0.00 0.00 4.73
871 950 0.252421 TCCACTCTCACTGCCTGGAT 60.252 55.000 0.00 0.00 0.00 3.41
911 1007 2.124942 GGAGCTTTGCCCGGAGAG 60.125 66.667 0.73 0.00 0.00 3.20
950 1422 4.847444 GAGCGGCTCCTTCAGGCC 62.847 72.222 19.20 0.00 45.29 5.19
962 1434 2.437359 CCAGGCCTTCAAGAGCGG 60.437 66.667 0.00 0.00 0.00 5.52
987 1459 3.499737 GACATTGCCGGCCGTGAG 61.500 66.667 28.42 10.30 0.00 3.51
1092 1564 2.025727 GCGATCACCGGACCGTAG 59.974 66.667 9.46 4.73 39.04 3.51
1295 1767 4.415332 CCGTGTCGTCACCCTCCG 62.415 72.222 7.21 0.00 41.09 4.63
1385 1857 0.995024 AATTGGTCTCAGGGGTCAGG 59.005 55.000 0.00 0.00 0.00 3.86
1386 1858 1.952367 GCAATTGGTCTCAGGGGTCAG 60.952 57.143 7.72 0.00 0.00 3.51
1387 1859 0.038166 GCAATTGGTCTCAGGGGTCA 59.962 55.000 7.72 0.00 0.00 4.02
1388 1860 0.329596 AGCAATTGGTCTCAGGGGTC 59.670 55.000 3.82 0.00 0.00 4.46
1389 1861 0.329596 GAGCAATTGGTCTCAGGGGT 59.670 55.000 26.44 0.00 39.31 4.95
1390 1862 3.181526 GAGCAATTGGTCTCAGGGG 57.818 57.895 26.44 0.00 39.31 4.79
1497 1974 1.188863 ACGTAGGCTCCAAATACGGT 58.811 50.000 9.72 0.00 44.91 4.83
1513 1990 4.689345 CACGGAATTCTAAGAGGAAAACGT 59.311 41.667 5.23 0.00 35.23 3.99
1515 1992 4.395231 CCCACGGAATTCTAAGAGGAAAAC 59.605 45.833 5.23 0.00 0.00 2.43
1541 2018 1.331241 CACACACATCACGACTCTCG 58.669 55.000 0.00 0.00 46.93 4.04
1546 2023 1.432514 ATCAGCACACACATCACGAC 58.567 50.000 0.00 0.00 0.00 4.34
1593 2070 1.033746 ATCTGCCCTGTTTCGCATGG 61.034 55.000 0.00 0.00 36.17 3.66
1609 2086 7.165460 TGAGCATCAATCAAACATCAAATCT 57.835 32.000 0.00 0.00 45.97 2.40
1629 2106 4.742438 TTTTAGACACGGTGATTTGAGC 57.258 40.909 16.29 0.00 0.00 4.26
1686 2164 5.360144 ACCTCTGTACCTGTATGTGTGTATC 59.640 44.000 0.00 0.00 0.00 2.24
1700 2178 5.211944 CTCGAGTGAGAGTACCTCTGTACC 61.212 54.167 3.62 0.00 45.57 3.34
1701 2179 3.859443 TCGAGTGAGAGTACCTCTGTAC 58.141 50.000 11.21 0.00 46.36 2.90
1702 2180 3.679361 GCTCGAGTGAGAGTACCTCTGTA 60.679 52.174 15.13 0.00 45.57 2.74
1703 2181 2.937873 GCTCGAGTGAGAGTACCTCTGT 60.938 54.545 15.13 1.25 45.57 3.41
1704 2182 1.668751 GCTCGAGTGAGAGTACCTCTG 59.331 57.143 15.13 0.00 45.57 3.35
1705 2183 1.279558 TGCTCGAGTGAGAGTACCTCT 59.720 52.381 15.13 0.00 45.57 3.69
1706 2184 1.740297 TGCTCGAGTGAGAGTACCTC 58.260 55.000 15.13 4.84 45.57 3.85
1707 2185 2.092646 AGATGCTCGAGTGAGAGTACCT 60.093 50.000 15.13 0.00 45.57 3.08
1708 2186 2.294074 AGATGCTCGAGTGAGAGTACC 58.706 52.381 15.13 0.00 45.57 3.34
1721 2199 0.460987 ACTTGCGGCTGTAGATGCTC 60.461 55.000 0.00 0.00 0.00 4.26
1722 2200 0.036010 AACTTGCGGCTGTAGATGCT 60.036 50.000 0.00 0.00 0.00 3.79
1723 2201 0.097674 CAACTTGCGGCTGTAGATGC 59.902 55.000 0.00 0.00 0.00 3.91
1724 2202 0.097674 GCAACTTGCGGCTGTAGATG 59.902 55.000 0.00 2.77 31.71 2.90
1725 2203 2.471255 GCAACTTGCGGCTGTAGAT 58.529 52.632 0.00 0.00 31.71 1.98
1726 2204 3.966215 GCAACTTGCGGCTGTAGA 58.034 55.556 0.00 0.00 31.71 2.59
1750 2242 3.851128 GCTGGCGTCTAGGGGTCC 61.851 72.222 0.00 0.00 0.00 4.46
1784 2276 2.165641 TGATATGTGACCGACCAGTGTC 59.834 50.000 0.00 0.00 38.18 3.67
1785 2277 2.176045 TGATATGTGACCGACCAGTGT 58.824 47.619 0.00 0.00 0.00 3.55
1788 2281 5.818136 AAATTTGATATGTGACCGACCAG 57.182 39.130 0.00 0.00 0.00 4.00
1791 2284 5.640732 AGCAAAATTTGATATGTGACCGAC 58.359 37.500 10.26 0.00 0.00 4.79
1792 2285 5.895636 AGCAAAATTTGATATGTGACCGA 57.104 34.783 10.26 0.00 0.00 4.69
1820 2313 5.390567 GGTTTGCTAATTAAGGTGTCGACTG 60.391 44.000 17.92 0.00 0.00 3.51
1822 2315 4.694037 AGGTTTGCTAATTAAGGTGTCGAC 59.306 41.667 9.11 9.11 0.00 4.20
1823 2316 4.901868 AGGTTTGCTAATTAAGGTGTCGA 58.098 39.130 0.00 0.00 0.00 4.20
1851 2345 8.352201 GCTAATTGGTTGCATGTCTTTATATGA 58.648 33.333 0.00 0.00 0.00 2.15
1853 2347 8.236585 TGCTAATTGGTTGCATGTCTTTATAT 57.763 30.769 0.00 0.00 0.00 0.86
1854 2348 7.637631 TGCTAATTGGTTGCATGTCTTTATA 57.362 32.000 0.00 0.00 0.00 0.98
1855 2349 6.528537 TGCTAATTGGTTGCATGTCTTTAT 57.471 33.333 0.00 0.00 0.00 1.40
1856 2350 5.973899 TGCTAATTGGTTGCATGTCTTTA 57.026 34.783 0.00 0.00 0.00 1.85
1857 2351 4.870123 TGCTAATTGGTTGCATGTCTTT 57.130 36.364 0.00 0.00 0.00 2.52
1858 2352 4.870123 TTGCTAATTGGTTGCATGTCTT 57.130 36.364 0.00 0.00 36.55 3.01
1859 2353 4.559153 GTTTGCTAATTGGTTGCATGTCT 58.441 39.130 0.00 0.00 36.55 3.41
1860 2354 3.679502 GGTTTGCTAATTGGTTGCATGTC 59.320 43.478 0.00 0.00 36.55 3.06
1861 2355 3.324556 AGGTTTGCTAATTGGTTGCATGT 59.675 39.130 0.00 0.00 36.55 3.21
1862 2356 3.928375 GAGGTTTGCTAATTGGTTGCATG 59.072 43.478 0.00 0.00 36.55 4.06
1863 2357 3.577848 TGAGGTTTGCTAATTGGTTGCAT 59.422 39.130 0.00 0.00 36.55 3.96
1864 2358 2.961741 TGAGGTTTGCTAATTGGTTGCA 59.038 40.909 0.00 0.00 34.69 4.08
1865 2359 3.658757 TGAGGTTTGCTAATTGGTTGC 57.341 42.857 0.00 0.00 0.00 4.17
1866 2360 6.705381 TGAATTTGAGGTTTGCTAATTGGTTG 59.295 34.615 0.00 0.00 0.00 3.77
1867 2361 6.825610 TGAATTTGAGGTTTGCTAATTGGTT 58.174 32.000 0.00 0.00 0.00 3.67
1868 2362 6.418057 TGAATTTGAGGTTTGCTAATTGGT 57.582 33.333 0.00 0.00 0.00 3.67
1869 2363 8.469200 TCTATGAATTTGAGGTTTGCTAATTGG 58.531 33.333 0.00 0.00 0.00 3.16
1870 2364 9.859427 TTCTATGAATTTGAGGTTTGCTAATTG 57.141 29.630 0.00 0.00 0.00 2.32
1873 2367 9.295825 TCTTTCTATGAATTTGAGGTTTGCTAA 57.704 29.630 0.00 0.00 0.00 3.09
1874 2368 8.730680 GTCTTTCTATGAATTTGAGGTTTGCTA 58.269 33.333 0.00 0.00 0.00 3.49
1875 2369 7.231317 TGTCTTTCTATGAATTTGAGGTTTGCT 59.769 33.333 0.00 0.00 0.00 3.91
1876 2370 7.370383 TGTCTTTCTATGAATTTGAGGTTTGC 58.630 34.615 0.00 0.00 0.00 3.68
1877 2371 9.350357 CATGTCTTTCTATGAATTTGAGGTTTG 57.650 33.333 0.00 0.00 0.00 2.93
1878 2372 8.031277 GCATGTCTTTCTATGAATTTGAGGTTT 58.969 33.333 0.00 0.00 0.00 3.27
1879 2373 7.177216 TGCATGTCTTTCTATGAATTTGAGGTT 59.823 33.333 0.00 0.00 0.00 3.50
1880 2374 6.660521 TGCATGTCTTTCTATGAATTTGAGGT 59.339 34.615 0.00 0.00 0.00 3.85
1881 2375 7.092137 TGCATGTCTTTCTATGAATTTGAGG 57.908 36.000 0.00 0.00 0.00 3.86
1882 2376 7.217636 CGTTGCATGTCTTTCTATGAATTTGAG 59.782 37.037 0.00 0.00 0.00 3.02
1883 2377 7.022979 CGTTGCATGTCTTTCTATGAATTTGA 58.977 34.615 0.00 0.00 0.00 2.69
1884 2378 6.803320 ACGTTGCATGTCTTTCTATGAATTTG 59.197 34.615 0.00 0.00 0.00 2.32
1885 2379 6.913170 ACGTTGCATGTCTTTCTATGAATTT 58.087 32.000 0.00 0.00 0.00 1.82
1886 2380 6.500684 ACGTTGCATGTCTTTCTATGAATT 57.499 33.333 0.00 0.00 0.00 2.17
1887 2381 7.609760 TTACGTTGCATGTCTTTCTATGAAT 57.390 32.000 0.00 0.00 0.00 2.57
1888 2382 7.295201 GTTTACGTTGCATGTCTTTCTATGAA 58.705 34.615 0.00 0.00 0.00 2.57
1889 2383 6.400621 CGTTTACGTTGCATGTCTTTCTATGA 60.401 38.462 0.00 0.00 34.11 2.15
1890 2384 5.728049 CGTTTACGTTGCATGTCTTTCTATG 59.272 40.000 0.00 0.00 34.11 2.23
1891 2385 5.636121 TCGTTTACGTTGCATGTCTTTCTAT 59.364 36.000 0.00 0.00 40.80 1.98
1892 2386 4.983538 TCGTTTACGTTGCATGTCTTTCTA 59.016 37.500 0.00 0.00 40.80 2.10
1893 2387 3.805422 TCGTTTACGTTGCATGTCTTTCT 59.195 39.130 0.00 0.00 40.80 2.52
1894 2388 4.123276 TCGTTTACGTTGCATGTCTTTC 57.877 40.909 0.00 0.00 40.80 2.62
1898 2392 3.115098 CGTTTTCGTTTACGTTGCATGTC 59.885 43.478 0.00 0.00 40.80 3.06
1910 2404 6.025280 CCCGATTATTTCATCGTTTTCGTTT 58.975 36.000 2.68 0.00 43.86 3.60
1915 2409 6.485313 TGATAGCCCGATTATTTCATCGTTTT 59.515 34.615 2.68 0.00 43.86 2.43
1921 2415 9.480053 CAAATTTTGATAGCCCGATTATTTCAT 57.520 29.630 2.88 0.00 0.00 2.57
1924 2418 8.474025 TGTCAAATTTTGATAGCCCGATTATTT 58.526 29.630 14.54 0.00 42.47 1.40
1927 2421 7.068103 ACATGTCAAATTTTGATAGCCCGATTA 59.932 33.333 14.54 0.00 42.47 1.75
1956 2481 7.677892 TCTTCTCCATAGCTAGTACGAAGATA 58.322 38.462 17.38 1.25 33.00 1.98
1961 2486 5.866207 TGATCTTCTCCATAGCTAGTACGA 58.134 41.667 0.00 0.00 0.00 3.43
1963 2488 6.661377 TGGATGATCTTCTCCATAGCTAGTAC 59.339 42.308 8.38 0.00 36.63 2.73
1975 2500 5.867330 AGGACAATCATGGATGATCTTCTC 58.133 41.667 8.38 0.53 46.22 2.87
1980 2505 3.255149 GGCAAGGACAATCATGGATGATC 59.745 47.826 2.59 0.00 46.22 2.92
1990 2515 2.106683 CGGACGGGCAAGGACAATC 61.107 63.158 0.00 0.00 0.00 2.67
1991 2516 2.046314 CGGACGGGCAAGGACAAT 60.046 61.111 0.00 0.00 0.00 2.71
1992 2517 3.234630 CTCGGACGGGCAAGGACAA 62.235 63.158 0.00 0.00 0.00 3.18
2004 2529 4.867599 CGGTAAGGGCGCTCGGAC 62.868 72.222 7.64 6.72 0.00 4.79
2009 2534 3.372554 GAAGAGCGGTAAGGGCGCT 62.373 63.158 7.64 0.00 42.48 5.92
2010 2535 2.890961 GAAGAGCGGTAAGGGCGC 60.891 66.667 0.00 0.00 35.00 6.53
2012 2537 1.227002 CGAGAAGAGCGGTAAGGGC 60.227 63.158 0.00 0.00 0.00 5.19
2014 2539 4.403976 GCGAGAAGAGCGGTAAGG 57.596 61.111 0.00 0.00 0.00 2.69
2033 2558 1.804151 TGCATTTTCGAGCGCTACTTT 59.196 42.857 11.50 0.00 0.00 2.66
2062 2587 0.741326 TGACGAGTAGATCTGGCTGC 59.259 55.000 5.18 0.00 0.00 5.25
2068 2593 2.105134 AGGTCCGATGACGAGTAGATCT 59.895 50.000 0.00 0.00 42.73 2.75
2074 2599 1.658686 GCTCAGGTCCGATGACGAGT 61.659 60.000 0.00 0.00 42.73 4.18
2081 2606 2.043852 AGGTCGCTCAGGTCCGAT 60.044 61.111 0.00 0.00 35.76 4.18
2082 2607 3.062466 CAGGTCGCTCAGGTCCGA 61.062 66.667 0.00 0.00 0.00 4.55
2084 2609 4.459089 GGCAGGTCGCTCAGGTCC 62.459 72.222 0.00 0.00 41.91 4.46
2087 2612 2.290122 CTAGTGGCAGGTCGCTCAGG 62.290 65.000 0.00 0.00 41.91 3.86
2094 2619 0.036875 AACAAGGCTAGTGGCAGGTC 59.963 55.000 0.00 0.00 44.01 3.85
2098 2623 0.324943 GGAGAACAAGGCTAGTGGCA 59.675 55.000 0.00 0.00 44.01 4.92
2099 2624 0.615850 AGGAGAACAAGGCTAGTGGC 59.384 55.000 0.00 0.00 40.90 5.01
2100 2625 3.425162 AAAGGAGAACAAGGCTAGTGG 57.575 47.619 0.00 0.00 0.00 4.00
2101 2626 4.022849 CCAAAAAGGAGAACAAGGCTAGTG 60.023 45.833 0.00 0.00 41.22 2.74
2102 2627 4.145052 CCAAAAAGGAGAACAAGGCTAGT 58.855 43.478 0.00 0.00 41.22 2.57
2103 2628 3.507622 CCCAAAAAGGAGAACAAGGCTAG 59.492 47.826 0.00 0.00 41.22 3.42
2104 2629 3.496331 CCCAAAAAGGAGAACAAGGCTA 58.504 45.455 0.00 0.00 41.22 3.93
2105 2630 2.319844 CCCAAAAAGGAGAACAAGGCT 58.680 47.619 0.00 0.00 41.22 4.58
2106 2631 1.270305 GCCCAAAAAGGAGAACAAGGC 60.270 52.381 0.00 0.00 41.22 4.35
2107 2632 1.000274 CGCCCAAAAAGGAGAACAAGG 60.000 52.381 0.00 0.00 41.22 3.61
2108 2633 1.000274 CCGCCCAAAAAGGAGAACAAG 60.000 52.381 0.00 0.00 41.22 3.16
2109 2634 1.036707 CCGCCCAAAAAGGAGAACAA 58.963 50.000 0.00 0.00 41.22 2.83
2110 2635 0.183971 TCCGCCCAAAAAGGAGAACA 59.816 50.000 0.00 0.00 41.22 3.18
2111 2636 1.269723 CTTCCGCCCAAAAAGGAGAAC 59.730 52.381 0.00 0.00 41.22 3.01
2112 2637 1.133606 ACTTCCGCCCAAAAAGGAGAA 60.134 47.619 0.00 0.00 41.22 2.87
2113 2638 0.476771 ACTTCCGCCCAAAAAGGAGA 59.523 50.000 0.00 0.00 41.22 3.71
2114 2639 0.881796 GACTTCCGCCCAAAAAGGAG 59.118 55.000 0.00 0.00 41.22 3.69
2115 2640 0.538746 GGACTTCCGCCCAAAAAGGA 60.539 55.000 0.00 0.00 41.22 3.36
2116 2641 1.964448 GGACTTCCGCCCAAAAAGG 59.036 57.895 0.00 0.00 37.03 3.11
2127 2652 1.745489 GTGCCATGGTCGGACTTCC 60.745 63.158 14.67 0.00 0.00 3.46
2128 2653 2.100631 CGTGCCATGGTCGGACTTC 61.101 63.158 14.67 0.00 0.00 3.01
2129 2654 2.047274 CGTGCCATGGTCGGACTT 60.047 61.111 14.67 0.00 0.00 3.01
2130 2655 4.082523 CCGTGCCATGGTCGGACT 62.083 66.667 31.99 0.00 46.05 3.85
2131 2656 4.077184 TCCGTGCCATGGTCGGAC 62.077 66.667 33.14 17.60 46.54 4.79
2134 2659 4.386951 TGGTCCGTGCCATGGTCG 62.387 66.667 14.67 17.58 32.81 4.79
2135 2660 2.746277 GTGGTCCGTGCCATGGTC 60.746 66.667 14.67 6.41 41.08 4.02
2136 2661 4.344865 GGTGGTCCGTGCCATGGT 62.345 66.667 14.67 0.00 41.08 3.55
2146 2671 0.893727 ACAGCAAAATCGGGTGGTCC 60.894 55.000 0.00 0.00 38.04 4.46
2147 2672 0.521735 GACAGCAAAATCGGGTGGTC 59.478 55.000 0.00 0.00 38.04 4.02
2148 2673 1.234615 CGACAGCAAAATCGGGTGGT 61.235 55.000 0.00 0.00 38.04 4.16
2149 2674 1.501741 CGACAGCAAAATCGGGTGG 59.498 57.895 0.00 0.00 38.04 4.61
2154 2679 0.366871 CTCGACCGACAGCAAAATCG 59.633 55.000 0.00 0.00 38.08 3.34
2155 2680 0.721718 CCTCGACCGACAGCAAAATC 59.278 55.000 0.00 0.00 0.00 2.17
2156 2681 0.673644 CCCTCGACCGACAGCAAAAT 60.674 55.000 0.00 0.00 0.00 1.82
2157 2682 1.301401 CCCTCGACCGACAGCAAAA 60.301 57.895 0.00 0.00 0.00 2.44
2158 2683 2.342279 CCCTCGACCGACAGCAAA 59.658 61.111 0.00 0.00 0.00 3.68
2159 2684 4.373116 GCCCTCGACCGACAGCAA 62.373 66.667 4.62 0.00 0.00 3.91
2177 2702 4.389576 CAGCAGGGAAACACGCGC 62.390 66.667 5.73 0.00 36.53 6.86
2178 2703 4.389576 GCAGCAGGGAAACACGCG 62.390 66.667 3.53 3.53 36.53 6.01
2179 2704 2.980233 AGCAGCAGGGAAACACGC 60.980 61.111 0.00 0.00 0.00 5.34
2180 2705 2.949106 CAGCAGCAGGGAAACACG 59.051 61.111 0.00 0.00 0.00 4.49
2181 2706 1.458639 AAGCAGCAGCAGGGAAACAC 61.459 55.000 3.17 0.00 45.49 3.32
2182 2707 1.152694 AAGCAGCAGCAGGGAAACA 60.153 52.632 3.17 0.00 45.49 2.83
2183 2708 0.892814 AGAAGCAGCAGCAGGGAAAC 60.893 55.000 3.17 0.00 45.49 2.78
2184 2709 0.178981 AAGAAGCAGCAGCAGGGAAA 60.179 50.000 3.17 0.00 45.49 3.13
2185 2710 0.178981 AAAGAAGCAGCAGCAGGGAA 60.179 50.000 3.17 0.00 45.49 3.97
2186 2711 0.892358 CAAAGAAGCAGCAGCAGGGA 60.892 55.000 3.17 0.00 45.49 4.20
2187 2712 1.585006 CAAAGAAGCAGCAGCAGGG 59.415 57.895 3.17 0.00 45.49 4.45
2188 2713 1.585006 CCAAAGAAGCAGCAGCAGG 59.415 57.895 3.17 0.00 45.49 4.85
2189 2714 0.892358 TCCCAAAGAAGCAGCAGCAG 60.892 55.000 3.17 0.00 45.49 4.24
2190 2715 0.251474 ATCCCAAAGAAGCAGCAGCA 60.251 50.000 3.17 0.00 45.49 4.41
2191 2716 0.172803 CATCCCAAAGAAGCAGCAGC 59.827 55.000 0.00 0.00 42.56 5.25
2192 2717 0.172803 GCATCCCAAAGAAGCAGCAG 59.827 55.000 0.00 0.00 39.06 4.24
2193 2718 1.588824 CGCATCCCAAAGAAGCAGCA 61.589 55.000 0.00 0.00 39.19 4.41
2194 2719 1.138247 CGCATCCCAAAGAAGCAGC 59.862 57.895 0.00 0.00 39.19 5.25
2195 2720 1.660560 CCCGCATCCCAAAGAAGCAG 61.661 60.000 0.00 0.00 39.19 4.24
2196 2721 1.678635 CCCGCATCCCAAAGAAGCA 60.679 57.895 0.00 0.00 39.19 3.91
2197 2722 3.068729 GCCCGCATCCCAAAGAAGC 62.069 63.158 0.00 0.00 35.82 3.86
2198 2723 1.678635 TGCCCGCATCCCAAAGAAG 60.679 57.895 0.00 0.00 0.00 2.85
2199 2724 1.976474 GTGCCCGCATCCCAAAGAA 60.976 57.895 0.00 0.00 0.00 2.52
2200 2725 2.361104 GTGCCCGCATCCCAAAGA 60.361 61.111 0.00 0.00 0.00 2.52
2201 2726 3.814268 CGTGCCCGCATCCCAAAG 61.814 66.667 0.00 0.00 0.00 2.77
2219 2744 2.110006 GCGGAGGAGGAAGCCATC 59.890 66.667 0.00 0.00 0.00 3.51
2220 2745 3.854669 CGCGGAGGAGGAAGCCAT 61.855 66.667 0.00 0.00 0.00 4.40
2224 2749 4.521062 CTGCCGCGGAGGAGGAAG 62.521 72.222 33.48 9.68 45.00 3.46
2265 2790 4.652131 AAACATGGCGGTGGCGGA 62.652 61.111 0.00 0.00 41.24 5.54
2266 2791 4.418401 CAAACATGGCGGTGGCGG 62.418 66.667 0.00 0.00 41.24 6.13
2267 2792 4.418401 CCAAACATGGCGGTGGCG 62.418 66.667 0.00 0.00 41.24 5.69
2275 2800 1.004679 GCCTTGGTGCCAAACATGG 60.005 57.895 5.10 4.16 35.33 3.66
2276 2801 1.373246 CGCCTTGGTGCCAAACATG 60.373 57.895 5.10 0.00 35.33 3.21
2277 2802 1.832167 ACGCCTTGGTGCCAAACAT 60.832 52.632 5.10 0.00 35.33 2.71
2278 2803 2.441164 ACGCCTTGGTGCCAAACA 60.441 55.556 5.10 0.00 35.33 2.83
2279 2804 2.027460 CACGCCTTGGTGCCAAAC 59.973 61.111 5.10 0.06 35.33 2.93
2280 2805 2.441164 ACACGCCTTGGTGCCAAA 60.441 55.556 5.10 0.00 41.65 3.28
2281 2806 2.904866 GACACGCCTTGGTGCCAA 60.905 61.111 3.43 3.43 41.65 4.52
2282 2807 3.825160 GAGACACGCCTTGGTGCCA 62.825 63.158 0.00 0.00 41.65 4.92
2283 2808 3.050275 GAGACACGCCTTGGTGCC 61.050 66.667 0.00 0.00 41.65 5.01
2284 2809 3.414700 CGAGACACGCCTTGGTGC 61.415 66.667 0.00 0.00 41.65 5.01
2285 2810 2.738521 CCGAGACACGCCTTGGTG 60.739 66.667 0.00 0.00 43.54 4.17
2286 2811 4.681978 GCCGAGACACGCCTTGGT 62.682 66.667 7.81 0.00 39.45 3.67
2287 2812 4.680237 TGCCGAGACACGCCTTGG 62.680 66.667 0.00 0.00 40.10 3.61
2288 2813 3.414700 GTGCCGAGACACGCCTTG 61.415 66.667 0.00 0.00 41.07 3.61
2289 2814 3.923864 TGTGCCGAGACACGCCTT 61.924 61.111 0.00 0.00 43.74 4.35
2290 2815 4.664677 GTGTGCCGAGACACGCCT 62.665 66.667 5.71 0.00 43.64 5.52
2301 2826 1.449601 CTACATGACCCGGTGTGCC 60.450 63.158 0.00 0.00 0.00 5.01
2302 2827 1.449601 CCTACATGACCCGGTGTGC 60.450 63.158 0.00 0.00 0.00 4.57
2303 2828 0.108329 GTCCTACATGACCCGGTGTG 60.108 60.000 0.00 0.00 0.00 3.82
2304 2829 0.252103 AGTCCTACATGACCCGGTGT 60.252 55.000 0.00 0.00 35.83 4.16
2305 2830 0.460311 GAGTCCTACATGACCCGGTG 59.540 60.000 0.00 0.00 35.83 4.94
2306 2831 0.040646 TGAGTCCTACATGACCCGGT 59.959 55.000 0.00 0.00 35.83 5.28
2307 2832 1.414158 ATGAGTCCTACATGACCCGG 58.586 55.000 0.00 0.00 35.83 5.73
2308 2833 3.223435 AGTATGAGTCCTACATGACCCG 58.777 50.000 0.00 0.00 35.83 5.28
2309 2834 3.574826 GGAGTATGAGTCCTACATGACCC 59.425 52.174 0.00 0.00 34.81 4.46
2310 2835 3.253677 CGGAGTATGAGTCCTACATGACC 59.746 52.174 0.00 5.24 35.52 4.02
2311 2836 4.135306 TCGGAGTATGAGTCCTACATGAC 58.865 47.826 0.00 0.00 35.52 3.06
2312 2837 4.432980 TCGGAGTATGAGTCCTACATGA 57.567 45.455 0.00 0.83 35.52 3.07
2313 2838 4.082517 CCATCGGAGTATGAGTCCTACATG 60.083 50.000 8.11 0.00 35.52 3.21
2314 2839 4.082845 CCATCGGAGTATGAGTCCTACAT 58.917 47.826 8.11 0.00 35.52 2.29
2315 2840 3.137728 TCCATCGGAGTATGAGTCCTACA 59.862 47.826 8.11 0.00 35.52 2.74
2316 2841 3.752665 TCCATCGGAGTATGAGTCCTAC 58.247 50.000 0.00 0.00 35.52 3.18
2317 2842 4.042934 TGATCCATCGGAGTATGAGTCCTA 59.957 45.833 0.00 0.00 35.52 2.94
2318 2843 3.181428 TGATCCATCGGAGTATGAGTCCT 60.181 47.826 0.00 0.00 35.52 3.85
2319 2844 3.157881 TGATCCATCGGAGTATGAGTCC 58.842 50.000 0.00 0.00 34.05 3.85
2320 2845 4.075682 TCTGATCCATCGGAGTATGAGTC 58.924 47.826 0.00 0.00 37.28 3.36
2321 2846 4.105754 TCTGATCCATCGGAGTATGAGT 57.894 45.455 0.00 0.00 37.28 3.41
2329 2854 1.637338 CCCATCTCTGATCCATCGGA 58.363 55.000 0.00 0.00 39.76 4.55
2330 2855 0.612229 CCCCATCTCTGATCCATCGG 59.388 60.000 0.00 0.00 34.46 4.18
2331 2856 1.549620 CTCCCCATCTCTGATCCATCG 59.450 57.143 0.00 0.00 0.00 3.84
2332 2857 1.907936 CCTCCCCATCTCTGATCCATC 59.092 57.143 0.00 0.00 0.00 3.51
2333 2858 2.041824 CCTCCCCATCTCTGATCCAT 57.958 55.000 0.00 0.00 0.00 3.41
2334 2859 0.765903 GCCTCCCCATCTCTGATCCA 60.766 60.000 0.00 0.00 0.00 3.41
2335 2860 0.473501 AGCCTCCCCATCTCTGATCC 60.474 60.000 0.00 0.00 0.00 3.36
2336 2861 1.899142 GTAGCCTCCCCATCTCTGATC 59.101 57.143 0.00 0.00 0.00 2.92
2337 2862 1.484065 GGTAGCCTCCCCATCTCTGAT 60.484 57.143 0.00 0.00 0.00 2.90
2338 2863 0.105453 GGTAGCCTCCCCATCTCTGA 60.105 60.000 0.00 0.00 0.00 3.27
2339 2864 1.467678 CGGTAGCCTCCCCATCTCTG 61.468 65.000 0.00 0.00 0.00 3.35
2340 2865 1.152440 CGGTAGCCTCCCCATCTCT 60.152 63.158 0.00 0.00 0.00 3.10
2341 2866 2.210711 CCGGTAGCCTCCCCATCTC 61.211 68.421 0.00 0.00 0.00 2.75
2342 2867 2.122813 CCGGTAGCCTCCCCATCT 60.123 66.667 0.00 0.00 0.00 2.90
2343 2868 2.122989 TCCGGTAGCCTCCCCATC 60.123 66.667 0.00 0.00 0.00 3.51
2344 2869 2.446036 GTCCGGTAGCCTCCCCAT 60.446 66.667 0.00 0.00 0.00 4.00
2345 2870 4.791069 GGTCCGGTAGCCTCCCCA 62.791 72.222 0.00 0.00 0.00 4.96
2346 2871 4.791069 TGGTCCGGTAGCCTCCCC 62.791 72.222 0.00 0.00 0.00 4.81
2347 2872 2.446036 ATGGTCCGGTAGCCTCCC 60.446 66.667 0.00 0.00 0.00 4.30
2348 2873 1.122019 ATCATGGTCCGGTAGCCTCC 61.122 60.000 0.00 0.00 0.00 4.30
2349 2874 1.629043 TATCATGGTCCGGTAGCCTC 58.371 55.000 0.00 0.00 0.00 4.70
2350 2875 2.180276 GATATCATGGTCCGGTAGCCT 58.820 52.381 0.00 0.00 0.00 4.58
2351 2876 1.207329 GGATATCATGGTCCGGTAGCC 59.793 57.143 0.00 3.21 0.00 3.93
2352 2877 1.899814 TGGATATCATGGTCCGGTAGC 59.100 52.381 0.00 0.00 37.32 3.58
2353 2878 2.093973 GCTGGATATCATGGTCCGGTAG 60.094 54.545 17.30 8.02 41.90 3.18
2354 2879 1.899814 GCTGGATATCATGGTCCGGTA 59.100 52.381 17.30 0.00 41.90 4.02
2355 2880 0.687354 GCTGGATATCATGGTCCGGT 59.313 55.000 17.30 0.00 41.90 5.28
2356 2881 0.036010 GGCTGGATATCATGGTCCGG 60.036 60.000 4.83 13.85 42.61 5.14
2357 2882 0.036010 GGGCTGGATATCATGGTCCG 60.036 60.000 4.83 0.00 37.32 4.79
2358 2883 1.004044 CAGGGCTGGATATCATGGTCC 59.996 57.143 4.83 4.84 35.02 4.46
2359 2884 1.980765 TCAGGGCTGGATATCATGGTC 59.019 52.381 4.83 0.00 0.00 4.02
2360 2885 2.123018 TCAGGGCTGGATATCATGGT 57.877 50.000 4.83 0.00 0.00 3.55
2361 2886 2.290768 CCTTCAGGGCTGGATATCATGG 60.291 54.545 4.83 0.00 0.00 3.66
2362 2887 2.641321 TCCTTCAGGGCTGGATATCATG 59.359 50.000 4.83 0.00 35.41 3.07
2363 2888 2.995746 TCCTTCAGGGCTGGATATCAT 58.004 47.619 4.83 0.00 35.41 2.45
2364 2889 2.494888 TCCTTCAGGGCTGGATATCA 57.505 50.000 4.83 0.00 35.41 2.15
2365 2890 2.238395 GGATCCTTCAGGGCTGGATATC 59.762 54.545 3.84 0.00 40.33 1.63
2366 2891 2.273619 GGATCCTTCAGGGCTGGATAT 58.726 52.381 3.84 0.00 40.33 1.63
2367 2892 1.734655 GGATCCTTCAGGGCTGGATA 58.265 55.000 3.84 0.00 40.33 2.59
2368 2893 1.414061 CGGATCCTTCAGGGCTGGAT 61.414 60.000 10.75 0.00 42.65 3.41
2369 2894 2.066393 CGGATCCTTCAGGGCTGGA 61.066 63.158 10.75 0.00 35.41 3.86
2370 2895 2.037620 CTCGGATCCTTCAGGGCTGG 62.038 65.000 10.75 0.00 35.41 4.85
2371 2896 1.445095 CTCGGATCCTTCAGGGCTG 59.555 63.158 10.75 0.00 35.41 4.85
2372 2897 3.962557 CTCGGATCCTTCAGGGCT 58.037 61.111 10.75 0.00 35.41 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.