Multiple sequence alignment - TraesCS3D01G396400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G396400 chr3D 100.000 7208 0 0 1 7208 511340773 511347980 0.000000e+00 13311
1 TraesCS3D01G396400 chr3D 94.660 206 7 3 5654 5855 388314830 388314625 4.200000e-82 316
2 TraesCS3D01G396400 chr3B 95.305 4707 145 32 987 5665 672865225 672869883 0.000000e+00 7398
3 TraesCS3D01G396400 chr3B 93.955 1373 58 17 5845 7208 672869880 672871236 0.000000e+00 2052
4 TraesCS3D01G396400 chr3B 83.892 925 62 43 71 935 672864204 672865101 0.000000e+00 802
5 TraesCS3D01G396400 chr3B 95.402 87 3 1 2673 2758 789764462 789764548 3.510000e-28 137
6 TraesCS3D01G396400 chr3A 96.066 2135 65 6 3535 5665 647476658 647478777 0.000000e+00 3459
7 TraesCS3D01G396400 chr3A 95.619 1689 65 4 992 2676 647474150 647475833 0.000000e+00 2700
8 TraesCS3D01G396400 chr3A 95.175 829 24 7 6392 7208 647479334 647480158 0.000000e+00 1295
9 TraesCS3D01G396400 chr3A 91.741 787 42 14 2757 3536 647475832 647476602 0.000000e+00 1072
10 TraesCS3D01G396400 chr3A 86.538 780 38 27 194 935 647473274 647474024 0.000000e+00 797
11 TraesCS3D01G396400 chr3A 89.910 555 30 19 5845 6395 647478774 647479306 0.000000e+00 691
12 TraesCS3D01G396400 chr3A 92.000 125 4 3 1 119 647473144 647473268 3.460000e-38 171
13 TraesCS3D01G396400 chr5B 95.223 921 30 5 6300 7208 437803616 437802698 0.000000e+00 1445
14 TraesCS3D01G396400 chr5B 96.181 288 11 0 6009 6296 437806102 437805815 8.460000e-129 472
15 TraesCS3D01G396400 chr5B 97.906 191 2 1 5660 5848 2812405 2812595 5.390000e-86 329
16 TraesCS3D01G396400 chr7D 98.413 189 1 1 5662 5848 161844576 161844388 1.500000e-86 331
17 TraesCS3D01G396400 chr7D 95.294 85 3 1 2675 2758 602187240 602187324 4.540000e-27 134
18 TraesCS3D01G396400 chr7D 92.473 93 5 2 2668 2758 536134104 536134012 1.630000e-26 132
19 TraesCS3D01G396400 chr1D 97.917 192 2 1 5659 5848 93500978 93501169 1.500000e-86 331
20 TraesCS3D01G396400 chr1D 82.197 264 45 2 4863 5125 352415654 352415916 7.280000e-55 226
21 TraesCS3D01G396400 chr1D 89.362 94 8 2 3250 3342 352414478 352414570 4.570000e-22 117
22 TraesCS3D01G396400 chr5D 97.906 191 2 1 5658 5846 130661516 130661326 5.390000e-86 329
23 TraesCS3D01G396400 chr5D 96.429 196 4 2 5659 5852 486861389 486861195 3.240000e-83 320
24 TraesCS3D01G396400 chr2D 96.970 198 3 2 5653 5848 20189296 20189492 5.390000e-86 329
25 TraesCS3D01G396400 chr2D 97.906 191 2 1 5661 5849 26038778 26038968 5.390000e-86 329
26 TraesCS3D01G396400 chr2D 97.674 86 1 1 2674 2758 119819450 119819535 5.830000e-31 147
27 TraesCS3D01G396400 chr4A 96.465 198 3 3 5663 5858 634457246 634457051 2.510000e-84 324
28 TraesCS3D01G396400 chr2A 84.225 355 30 9 4415 4752 630588749 630589094 9.020000e-84 322
29 TraesCS3D01G396400 chr6D 87.793 213 22 2 4433 4644 401168959 401168750 5.580000e-61 246
30 TraesCS3D01G396400 chr1A 82.576 264 44 2 4863 5125 452863813 452864075 1.560000e-56 231
31 TraesCS3D01G396400 chr1A 93.478 92 2 4 2670 2758 513118096 513118186 4.540000e-27 134
32 TraesCS3D01G396400 chr1A 92.473 93 5 2 2671 2761 580514741 580514833 1.630000e-26 132
33 TraesCS3D01G396400 chr1A 92.473 93 5 2 2671 2761 580542742 580542834 1.630000e-26 132
34 TraesCS3D01G396400 chr1A 89.362 94 8 2 3250 3342 452862630 452862722 4.570000e-22 117
35 TraesCS3D01G396400 chr1B 82.197 264 45 2 4863 5125 474685912 474686174 7.280000e-55 226
36 TraesCS3D01G396400 chr1B 96.203 79 3 0 3250 3328 474684680 474684758 5.870000e-26 130
37 TraesCS3D01G396400 chr7A 94.444 90 4 1 2670 2758 645281404 645281493 3.510000e-28 137


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G396400 chr3D 511340773 511347980 7207 False 13311.000000 13311 100.000000 1 7208 1 chr3D.!!$F1 7207
1 TraesCS3D01G396400 chr3B 672864204 672871236 7032 False 3417.333333 7398 91.050667 71 7208 3 chr3B.!!$F2 7137
2 TraesCS3D01G396400 chr3A 647473144 647480158 7014 False 1455.000000 3459 92.435571 1 7208 7 chr3A.!!$F1 7207
3 TraesCS3D01G396400 chr5B 437802698 437806102 3404 True 958.500000 1445 95.702000 6009 7208 2 chr5B.!!$R1 1199

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
879 959 0.105039 CGTCCCTGTCCCAAGATAGC 59.895 60.000 0.00 0.00 30.18 2.97 F
899 979 0.403271 AGCCCAGCACAAACTCTCAT 59.597 50.000 0.00 0.00 0.00 2.90 F
1052 1210 0.458669 CTGGCAATTGGATCCTGCAC 59.541 55.000 22.03 13.63 37.83 4.57 F
1403 1561 1.079127 GCAGCTCGGCTTTGAGGTA 60.079 57.895 5.74 0.00 44.42 3.08 F
2573 2738 1.595794 ACTAACTTGTGTTTGGACGCG 59.404 47.619 3.53 3.53 39.14 6.01 F
3307 3475 1.959042 CCGAGATTGATGTTCCTGGG 58.041 55.000 0.00 0.00 0.00 4.45 F
3473 3654 2.100087 TGACTGTTGCTAGAACACGTCA 59.900 45.455 20.29 20.29 36.70 4.35 F
3520 3701 2.158871 TGTTTAGAAGACACAGCGGGTT 60.159 45.455 0.00 0.00 0.00 4.11 F
5193 5444 2.475685 CGAACTCAGAGCATGCATTGTG 60.476 50.000 21.98 18.78 0.00 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2512 2677 0.536687 AATCATGAGCAGGATGGGCG 60.537 55.000 0.09 0.00 35.86 6.13 R
2573 2738 2.338577 ATGCCTTGAGGTATCTGCAC 57.661 50.000 0.00 0.00 35.53 4.57 R
2780 2946 6.741992 ACGCAATGATATTTTGAAGTCTCA 57.258 33.333 4.10 0.00 0.00 3.27 R
3307 3475 0.585357 CTTACCATGAGCGAGCATGC 59.415 55.000 10.51 10.51 43.30 4.06 R
3604 3842 2.416547 GACATCACGGAATTGTGGACTG 59.583 50.000 0.00 0.00 40.31 3.51 R
4857 5108 4.285863 CCCCCAAGCCTGTTAATTTATGA 58.714 43.478 0.00 0.00 0.00 2.15 R
5354 5605 1.136169 CATCCATCGCGTGTGCATATG 60.136 52.381 5.77 0.00 42.97 1.78 R
5364 5615 1.856802 TCATTCAGACATCCATCGCG 58.143 50.000 0.00 0.00 0.00 5.87 R
7014 9534 1.847328 TCGACAAGCCTACCAGATCA 58.153 50.000 0.00 0.00 0.00 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 62 1.004560 CCTCGTGCACCATCACACT 60.005 57.895 12.15 0.00 36.80 3.55
61 63 0.603707 CCTCGTGCACCATCACACTT 60.604 55.000 12.15 0.00 36.80 3.16
62 64 0.514255 CTCGTGCACCATCACACTTG 59.486 55.000 12.15 0.00 36.80 3.16
116 122 2.097954 CAGCAGCTGAGTGAAACAAACA 59.902 45.455 20.43 0.00 41.43 2.83
120 126 4.737054 CAGCTGAGTGAAACAAACAAACT 58.263 39.130 8.42 0.00 41.43 2.66
135 141 8.474006 ACAAACAAACTCAAAACTTTCATACC 57.526 30.769 0.00 0.00 0.00 2.73
136 142 8.091449 ACAAACAAACTCAAAACTTTCATACCA 58.909 29.630 0.00 0.00 0.00 3.25
137 143 8.379902 CAAACAAACTCAAAACTTTCATACCAC 58.620 33.333 0.00 0.00 0.00 4.16
147 161 3.836562 ACTTTCATACCACTTCCTACCGT 59.163 43.478 0.00 0.00 0.00 4.83
168 183 5.348164 CGTTTCCTTGGTTTGTTTCTCAAT 58.652 37.500 0.00 0.00 35.84 2.57
357 372 3.039526 CCCCCTCTCCCTCTCCCT 61.040 72.222 0.00 0.00 0.00 4.20
358 373 2.612251 CCCCTCTCCCTCTCCCTC 59.388 72.222 0.00 0.00 0.00 4.30
359 374 2.018086 CCCCTCTCCCTCTCCCTCT 61.018 68.421 0.00 0.00 0.00 3.69
360 375 1.541672 CCCTCTCCCTCTCCCTCTC 59.458 68.421 0.00 0.00 0.00 3.20
361 376 1.541672 CCTCTCCCTCTCCCTCTCC 59.458 68.421 0.00 0.00 0.00 3.71
362 377 1.541672 CTCTCCCTCTCCCTCTCCC 59.458 68.421 0.00 0.00 0.00 4.30
363 378 0.998945 CTCTCCCTCTCCCTCTCCCT 60.999 65.000 0.00 0.00 0.00 4.20
364 379 0.996762 TCTCCCTCTCCCTCTCCCTC 60.997 65.000 0.00 0.00 0.00 4.30
365 380 0.998945 CTCCCTCTCCCTCTCCCTCT 60.999 65.000 0.00 0.00 0.00 3.69
366 381 0.996762 TCCCTCTCCCTCTCCCTCTC 60.997 65.000 0.00 0.00 0.00 3.20
367 382 1.541672 CCTCTCCCTCTCCCTCTCC 59.458 68.421 0.00 0.00 0.00 3.71
373 388 1.541672 CCTCTCCCTCTCCCTCTCC 59.458 68.421 0.00 0.00 0.00 3.71
429 451 2.552591 CCCAATTTGCCAAATCCAAGCA 60.553 45.455 2.61 0.00 33.97 3.91
435 457 2.208431 TGCCAAATCCAAGCAAAAACG 58.792 42.857 0.00 0.00 32.56 3.60
436 458 1.530720 GCCAAATCCAAGCAAAAACGG 59.469 47.619 0.00 0.00 0.00 4.44
437 459 2.804933 GCCAAATCCAAGCAAAAACGGA 60.805 45.455 0.00 0.00 0.00 4.69
438 460 3.663025 CCAAATCCAAGCAAAAACGGAT 58.337 40.909 0.00 0.00 40.01 4.18
439 461 3.432933 CCAAATCCAAGCAAAAACGGATG 59.567 43.478 0.00 0.00 38.28 3.51
441 463 1.988293 TCCAAGCAAAAACGGATGGA 58.012 45.000 0.00 0.00 34.72 3.41
443 465 2.035321 TCCAAGCAAAAACGGATGGAAC 59.965 45.455 0.00 0.00 34.21 3.62
445 467 1.995376 AGCAAAAACGGATGGAACCT 58.005 45.000 0.00 0.00 0.00 3.50
446 468 1.613437 AGCAAAAACGGATGGAACCTG 59.387 47.619 0.00 0.00 0.00 4.00
447 469 1.934849 GCAAAAACGGATGGAACCTGC 60.935 52.381 0.00 0.00 0.00 4.85
455 477 3.502164 ATGGAACCTGCCATACAGC 57.498 52.632 0.00 0.00 46.56 4.40
464 488 1.203052 CTGCCATACAGCCAACCAAAG 59.797 52.381 0.00 0.00 40.19 2.77
474 498 5.324409 ACAGCCAACCAAAGAATAATCAGA 58.676 37.500 0.00 0.00 0.00 3.27
475 499 5.954150 ACAGCCAACCAAAGAATAATCAGAT 59.046 36.000 0.00 0.00 0.00 2.90
476 500 7.118723 ACAGCCAACCAAAGAATAATCAGATA 58.881 34.615 0.00 0.00 0.00 1.98
477 501 7.781693 ACAGCCAACCAAAGAATAATCAGATAT 59.218 33.333 0.00 0.00 0.00 1.63
571 613 6.147864 ACATGACAACAGCAACAAATTACT 57.852 33.333 0.00 0.00 0.00 2.24
572 614 7.012799 TGACATGACAACAGCAACAAATTACTA 59.987 33.333 0.00 0.00 0.00 1.82
573 615 7.138736 ACATGACAACAGCAACAAATTACTAC 58.861 34.615 0.00 0.00 0.00 2.73
608 650 3.993920 TGAAATTTGGAAGCCTGCTTTC 58.006 40.909 5.76 4.39 36.26 2.62
619 661 1.615392 GCCTGCTTTCACAAACCTGAT 59.385 47.619 0.00 0.00 0.00 2.90
627 673 3.874383 TCACAAACCTGATTCCTCCAA 57.126 42.857 0.00 0.00 0.00 3.53
741 800 1.714541 TGGGTCACCAAATGCAATGT 58.285 45.000 0.00 0.00 45.87 2.71
823 892 1.475213 CCGCTCTTCATTTACCCTCCC 60.475 57.143 0.00 0.00 0.00 4.30
854 923 0.109723 CCTCCTCCTCTACCTCCTCG 59.890 65.000 0.00 0.00 0.00 4.63
864 944 0.392193 TACCTCCTCGTCACTCGTCC 60.392 60.000 0.00 0.00 40.80 4.79
866 946 1.377463 CTCCTCGTCACTCGTCCCT 60.377 63.158 0.00 0.00 40.80 4.20
879 959 0.105039 CGTCCCTGTCCCAAGATAGC 59.895 60.000 0.00 0.00 30.18 2.97
896 976 1.900498 GCAGCCCAGCACAAACTCT 60.900 57.895 0.00 0.00 0.00 3.24
899 979 0.403271 AGCCCAGCACAAACTCTCAT 59.597 50.000 0.00 0.00 0.00 2.90
901 981 1.171308 CCCAGCACAAACTCTCATGG 58.829 55.000 0.00 0.00 0.00 3.66
926 1006 5.994054 TCATTCTCTTCCAAAAGTGAGACAG 59.006 40.000 0.00 0.00 36.62 3.51
927 1007 3.733337 TCTCTTCCAAAAGTGAGACAGC 58.267 45.455 0.00 0.00 32.65 4.40
932 1012 5.184864 TCTTCCAAAAGTGAGACAGCAAAAA 59.815 36.000 0.00 0.00 33.95 1.94
933 1013 5.596836 TCCAAAAGTGAGACAGCAAAAAT 57.403 34.783 0.00 0.00 0.00 1.82
934 1014 5.350633 TCCAAAAGTGAGACAGCAAAAATG 58.649 37.500 0.00 0.00 0.00 2.32
935 1015 4.508861 CCAAAAGTGAGACAGCAAAAATGG 59.491 41.667 0.00 0.00 0.00 3.16
936 1016 5.350633 CAAAAGTGAGACAGCAAAAATGGA 58.649 37.500 0.00 0.00 0.00 3.41
937 1017 4.843220 AAGTGAGACAGCAAAAATGGAG 57.157 40.909 0.00 0.00 0.00 3.86
938 1018 3.152341 AGTGAGACAGCAAAAATGGAGG 58.848 45.455 0.00 0.00 0.00 4.30
939 1019 2.229784 GTGAGACAGCAAAAATGGAGGG 59.770 50.000 0.00 0.00 0.00 4.30
940 1020 2.158475 TGAGACAGCAAAAATGGAGGGT 60.158 45.455 0.00 0.00 0.00 4.34
943 1043 3.711190 AGACAGCAAAAATGGAGGGTTTT 59.289 39.130 0.00 0.00 0.00 2.43
985 1107 1.306148 AGTTGCCGCATCATCATCTG 58.694 50.000 4.31 0.00 0.00 2.90
1052 1210 0.458669 CTGGCAATTGGATCCTGCAC 59.541 55.000 22.03 13.63 37.83 4.57
1059 1217 2.133359 TTGGATCCTGCACAGCTGCT 62.133 55.000 15.27 0.00 44.57 4.24
1275 1433 1.910671 TCCCTGCTTACCGGTGTTAAT 59.089 47.619 19.93 0.00 0.00 1.40
1278 1436 4.062991 CCCTGCTTACCGGTGTTAATATC 58.937 47.826 19.93 0.00 0.00 1.63
1320 1478 4.207891 TGAGGTAACCTGCTCTCATTTC 57.792 45.455 0.00 0.00 31.76 2.17
1324 1482 4.472833 AGGTAACCTGCTCTCATTTCATCT 59.527 41.667 0.00 0.00 29.57 2.90
1325 1483 4.813697 GGTAACCTGCTCTCATTTCATCTC 59.186 45.833 0.00 0.00 0.00 2.75
1347 1505 2.745515 GAACTGCGAGTTCCCTTACT 57.254 50.000 14.47 0.00 46.68 2.24
1350 1508 3.589495 ACTGCGAGTTCCCTTACTAAC 57.411 47.619 0.00 0.00 0.00 2.34
1355 1513 3.512680 CGAGTTCCCTTACTAACTGCAG 58.487 50.000 13.48 13.48 36.10 4.41
1403 1561 1.079127 GCAGCTCGGCTTTGAGGTA 60.079 57.895 5.74 0.00 44.42 3.08
1430 1588 3.335579 GTCATACAACCTGACTGTTCCC 58.664 50.000 0.00 0.00 39.90 3.97
1576 1736 4.219725 AGTTACTGCAACTCCTCTCTTCTC 59.780 45.833 0.00 0.00 44.48 2.87
1676 1836 4.511527 ACTTCAGATGTGGCATAGAGTTG 58.488 43.478 0.00 0.00 0.00 3.16
1766 1926 7.335924 TGAAGATAAAACCCAGTTGCTACATAC 59.664 37.037 0.13 0.00 0.00 2.39
1772 1932 4.009675 ACCCAGTTGCTACATACACAATG 58.990 43.478 0.13 0.00 41.74 2.82
1776 1936 5.327091 CAGTTGCTACATACACAATGCTTC 58.673 41.667 0.13 0.00 39.39 3.86
1831 1993 3.995199 ACGGAGTATATCACAAGGCATG 58.005 45.455 0.00 0.00 41.94 4.06
1889 2051 4.334481 CAGCATCTCTTGTGACATGCATAA 59.666 41.667 10.30 0.00 43.84 1.90
1958 2120 3.066342 CCTGCATGTTCTTCAGCTTATGG 59.934 47.826 0.00 0.00 0.00 2.74
1964 2126 6.405065 GCATGTTCTTCAGCTTATGGAATGAA 60.405 38.462 0.00 0.00 0.00 2.57
1978 2140 8.984891 TTATGGAATGAATGATGTGTTCAAAC 57.015 30.769 0.00 0.00 38.89 2.93
2134 2296 8.553459 CAGTATGATTTTCTGGACACTAAACT 57.447 34.615 0.00 0.00 39.69 2.66
2171 2333 8.739039 TGAGGTGATCCAACAGTAAATTATTTG 58.261 33.333 0.00 0.00 35.89 2.32
2220 2382 4.816385 GTCACTTTGAGTTCACATCAAGGA 59.184 41.667 5.02 0.00 37.91 3.36
2573 2738 1.595794 ACTAACTTGTGTTTGGACGCG 59.404 47.619 3.53 3.53 39.14 6.01
2780 2946 2.698803 TGCGTGACTGATAAGTTGCAT 58.301 42.857 2.51 0.00 0.00 3.96
2801 2967 6.976349 TGCATGAGACTTCAAAATATCATTGC 59.024 34.615 0.00 0.00 36.78 3.56
3307 3475 1.959042 CCGAGATTGATGTTCCTGGG 58.041 55.000 0.00 0.00 0.00 4.45
3473 3654 2.100087 TGACTGTTGCTAGAACACGTCA 59.900 45.455 20.29 20.29 36.70 4.35
3520 3701 2.158871 TGTTTAGAAGACACAGCGGGTT 60.159 45.455 0.00 0.00 0.00 4.11
3543 3781 3.119029 TGAAAATGCTGGCTTCCTAATGC 60.119 43.478 0.00 0.00 0.00 3.56
3559 3797 4.279671 CCTAATGCCCCGCAAACAATTATA 59.720 41.667 0.00 0.00 43.62 0.98
3604 3842 3.057526 GGAACCAACCTTGACTTGCATAC 60.058 47.826 0.00 0.00 0.00 2.39
3674 3912 3.433709 CAGTGAGCGTAGAGTCAAGATG 58.566 50.000 0.00 0.00 0.00 2.90
3985 4223 5.448654 ACCAGTGACCAATGCACATAATAT 58.551 37.500 0.00 0.00 38.70 1.28
4330 4572 5.356751 TGTGCTTCCATACCATGTTATCAAC 59.643 40.000 0.00 0.00 0.00 3.18
4709 4960 3.291809 TGCATGCACAAAGAATCAGTG 57.708 42.857 18.46 0.00 36.39 3.66
4727 4978 9.107177 GAATCAGTGATGAATCTTCAATGTACT 57.893 33.333 20.52 10.27 41.13 2.73
4728 4979 7.838771 TCAGTGATGAATCTTCAATGTACTG 57.161 36.000 20.52 13.67 41.13 2.74
4737 4988 9.031537 TGAATCTTCAATGTACTGTAGGACTTA 57.968 33.333 0.00 0.00 33.55 2.24
4767 5018 9.905713 TGGAATTAGACTCATTTACAAGCTTAT 57.094 29.630 0.00 0.00 0.00 1.73
4848 5099 4.124238 TGCTGGTGTCAGTAACTAACAAC 58.876 43.478 0.00 0.00 42.78 3.32
4857 5108 6.113411 GTCAGTAACTAACAACCCATATGCT 58.887 40.000 0.00 0.00 0.00 3.79
5179 5430 3.629855 TGCCTTGAAATGTTTCGAACTCA 59.370 39.130 0.00 0.47 40.01 3.41
5193 5444 2.475685 CGAACTCAGAGCATGCATTGTG 60.476 50.000 21.98 18.78 0.00 3.33
5278 5529 7.506114 TGATTAAAGGGACACTATACCATGTC 58.494 38.462 0.00 0.00 43.75 3.06
5354 5605 3.070734 TGGAATGATAGCTTCCTCTCTGC 59.929 47.826 0.00 0.00 42.27 4.26
5518 5769 2.602933 CCAAGCACGGCATCAATTATCG 60.603 50.000 0.00 0.00 0.00 2.92
5627 5878 7.649533 TCCTCATGAATGCTCATAACAAAAT 57.350 32.000 0.00 0.00 40.49 1.82
5661 5912 8.460428 GCTATACCCTATATATCGGCATCTTAC 58.540 40.741 0.00 0.00 0.00 2.34
5662 5913 9.742144 CTATACCCTATATATCGGCATCTTACT 57.258 37.037 0.00 0.00 0.00 2.24
5665 5916 8.466617 ACCCTATATATCGGCATCTTACTTAG 57.533 38.462 0.00 0.00 0.00 2.18
5666 5917 7.506261 ACCCTATATATCGGCATCTTACTTAGG 59.494 40.741 0.00 0.00 0.00 2.69
5667 5918 7.039644 CCCTATATATCGGCATCTTACTTAGGG 60.040 44.444 0.00 0.00 36.18 3.53
5668 5919 6.732896 ATATATCGGCATCTTACTTAGGGG 57.267 41.667 0.00 0.00 0.00 4.79
5669 5920 1.420430 TCGGCATCTTACTTAGGGGG 58.580 55.000 0.00 0.00 0.00 5.40
5670 5921 1.129058 CGGCATCTTACTTAGGGGGT 58.871 55.000 0.00 0.00 0.00 4.95
5671 5922 1.202651 CGGCATCTTACTTAGGGGGTG 60.203 57.143 0.00 0.00 0.00 4.61
5672 5923 1.844497 GGCATCTTACTTAGGGGGTGT 59.156 52.381 0.00 0.00 0.00 4.16
5673 5924 2.241430 GGCATCTTACTTAGGGGGTGTT 59.759 50.000 0.00 0.00 0.00 3.32
5674 5925 3.308904 GGCATCTTACTTAGGGGGTGTTT 60.309 47.826 0.00 0.00 0.00 2.83
5675 5926 3.694566 GCATCTTACTTAGGGGGTGTTTG 59.305 47.826 0.00 0.00 0.00 2.93
5676 5927 4.270008 CATCTTACTTAGGGGGTGTTTGG 58.730 47.826 0.00 0.00 0.00 3.28
5677 5928 3.329277 TCTTACTTAGGGGGTGTTTGGT 58.671 45.455 0.00 0.00 0.00 3.67
5678 5929 3.723154 TCTTACTTAGGGGGTGTTTGGTT 59.277 43.478 0.00 0.00 0.00 3.67
5679 5930 2.670019 ACTTAGGGGGTGTTTGGTTC 57.330 50.000 0.00 0.00 0.00 3.62
5680 5931 1.854280 ACTTAGGGGGTGTTTGGTTCA 59.146 47.619 0.00 0.00 0.00 3.18
5681 5932 2.158519 ACTTAGGGGGTGTTTGGTTCAG 60.159 50.000 0.00 0.00 0.00 3.02
5682 5933 0.774908 TAGGGGGTGTTTGGTTCAGG 59.225 55.000 0.00 0.00 0.00 3.86
5683 5934 1.533033 GGGGGTGTTTGGTTCAGGG 60.533 63.158 0.00 0.00 0.00 4.45
5684 5935 1.539665 GGGGTGTTTGGTTCAGGGA 59.460 57.895 0.00 0.00 0.00 4.20
5685 5936 0.826256 GGGGTGTTTGGTTCAGGGAC 60.826 60.000 0.00 0.00 0.00 4.46
5686 5937 0.185175 GGGTGTTTGGTTCAGGGACT 59.815 55.000 0.00 0.00 43.88 3.85
5687 5938 1.411074 GGGTGTTTGGTTCAGGGACTT 60.411 52.381 0.00 0.00 34.60 3.01
5688 5939 2.384828 GGTGTTTGGTTCAGGGACTTT 58.615 47.619 0.00 0.00 34.60 2.66
5689 5940 2.764010 GGTGTTTGGTTCAGGGACTTTT 59.236 45.455 0.00 0.00 34.60 2.27
5690 5941 3.196901 GGTGTTTGGTTCAGGGACTTTTT 59.803 43.478 0.00 0.00 34.60 1.94
5691 5942 4.403113 GGTGTTTGGTTCAGGGACTTTTTA 59.597 41.667 0.00 0.00 34.60 1.52
5692 5943 5.451381 GGTGTTTGGTTCAGGGACTTTTTAG 60.451 44.000 0.00 0.00 34.60 1.85
5693 5944 5.126545 GTGTTTGGTTCAGGGACTTTTTAGT 59.873 40.000 0.00 0.00 34.60 2.24
5694 5945 5.358725 TGTTTGGTTCAGGGACTTTTTAGTC 59.641 40.000 0.00 0.00 34.60 2.59
5715 5966 6.211587 GTCCTAGAGACTAGAAAAAGTCCC 57.788 45.833 0.00 0.00 45.86 4.46
5716 5967 5.953548 GTCCTAGAGACTAGAAAAAGTCCCT 59.046 44.000 0.00 0.00 45.86 4.20
5717 5968 7.118060 GTCCTAGAGACTAGAAAAAGTCCCTA 58.882 42.308 0.00 0.00 45.86 3.53
5718 5969 7.614974 GTCCTAGAGACTAGAAAAAGTCCCTAA 59.385 40.741 0.00 0.00 45.86 2.69
5719 5970 8.175431 TCCTAGAGACTAGAAAAAGTCCCTAAA 58.825 37.037 0.00 0.00 45.86 1.85
5720 5971 8.813951 CCTAGAGACTAGAAAAAGTCCCTAAAA 58.186 37.037 0.00 0.00 45.86 1.52
5723 5974 8.715842 AGAGACTAGAAAAAGTCCCTAAAAAGT 58.284 33.333 0.00 0.00 45.86 2.66
5724 5975 8.905660 AGACTAGAAAAAGTCCCTAAAAAGTC 57.094 34.615 0.00 0.00 45.86 3.01
5725 5976 7.937942 AGACTAGAAAAAGTCCCTAAAAAGTCC 59.062 37.037 0.00 0.00 45.86 3.85
5726 5977 7.002879 ACTAGAAAAAGTCCCTAAAAAGTCCC 58.997 38.462 0.00 0.00 0.00 4.46
5727 5978 6.027025 AGAAAAAGTCCCTAAAAAGTCCCT 57.973 37.500 0.00 0.00 0.00 4.20
5728 5979 7.157947 AGAAAAAGTCCCTAAAAAGTCCCTA 57.842 36.000 0.00 0.00 0.00 3.53
5729 5980 7.232188 AGAAAAAGTCCCTAAAAAGTCCCTAG 58.768 38.462 0.00 0.00 0.00 3.02
5730 5981 5.516059 AAAGTCCCTAAAAAGTCCCTAGG 57.484 43.478 0.06 0.06 33.30 3.02
5731 5982 4.431158 AGTCCCTAAAAAGTCCCTAGGA 57.569 45.455 11.48 0.00 35.17 2.94
5732 5983 4.771338 AGTCCCTAAAAAGTCCCTAGGAA 58.229 43.478 11.48 0.00 35.17 3.36
5733 5984 4.535294 AGTCCCTAAAAAGTCCCTAGGAAC 59.465 45.833 11.48 0.00 35.17 3.62
5734 5985 3.848377 TCCCTAAAAAGTCCCTAGGAACC 59.152 47.826 11.48 0.00 35.17 3.62
5735 5986 3.590182 CCCTAAAAAGTCCCTAGGAACCA 59.410 47.826 11.48 0.00 35.17 3.67
5736 5987 4.043686 CCCTAAAAAGTCCCTAGGAACCAA 59.956 45.833 11.48 0.00 35.17 3.67
5737 5988 5.458508 CCCTAAAAAGTCCCTAGGAACCAAA 60.459 44.000 11.48 0.00 35.17 3.28
5738 5989 5.475909 CCTAAAAAGTCCCTAGGAACCAAAC 59.524 44.000 11.48 0.00 35.17 2.93
5739 5990 2.853235 AAGTCCCTAGGAACCAAACG 57.147 50.000 11.48 0.00 31.38 3.60
5740 5991 0.981943 AGTCCCTAGGAACCAAACGG 59.018 55.000 11.48 0.00 31.38 4.44
5741 5992 0.035725 GTCCCTAGGAACCAAACGGG 60.036 60.000 11.48 0.00 44.81 5.28
5742 5993 0.178897 TCCCTAGGAACCAAACGGGA 60.179 55.000 11.48 0.00 41.15 5.14
5743 5994 0.252197 CCCTAGGAACCAAACGGGAG 59.748 60.000 11.48 0.00 41.15 4.30
5744 5995 0.252197 CCTAGGAACCAAACGGGAGG 59.748 60.000 1.05 0.00 41.15 4.30
5745 5996 0.252197 CTAGGAACCAAACGGGAGGG 59.748 60.000 0.00 0.00 41.15 4.30
5746 5997 0.178897 TAGGAACCAAACGGGAGGGA 60.179 55.000 0.00 0.00 41.15 4.20
5747 5998 1.303074 GGAACCAAACGGGAGGGAC 60.303 63.158 0.00 0.00 41.15 4.46
5749 6000 0.109913 GAACCAAACGGGAGGGACTT 59.890 55.000 0.00 0.00 41.55 3.01
5750 6001 0.554305 AACCAAACGGGAGGGACTTT 59.446 50.000 0.00 0.00 41.55 2.66
5751 6002 0.554305 ACCAAACGGGAGGGACTTTT 59.446 50.000 0.00 0.00 41.55 2.27
5752 6003 1.063492 ACCAAACGGGAGGGACTTTTT 60.063 47.619 0.00 0.00 41.55 1.94
5753 6004 1.611977 CCAAACGGGAGGGACTTTTTC 59.388 52.381 0.00 0.00 41.55 2.29
5754 6005 2.583143 CAAACGGGAGGGACTTTTTCT 58.417 47.619 0.00 0.00 41.55 2.52
5755 6006 3.497227 CCAAACGGGAGGGACTTTTTCTA 60.497 47.826 0.00 0.00 41.55 2.10
5756 6007 3.413846 AACGGGAGGGACTTTTTCTAC 57.586 47.619 0.00 0.00 41.55 2.59
5757 6008 2.332117 ACGGGAGGGACTTTTTCTACA 58.668 47.619 0.00 0.00 41.55 2.74
5758 6009 2.302157 ACGGGAGGGACTTTTTCTACAG 59.698 50.000 0.00 0.00 41.55 2.74
5759 6010 2.354805 CGGGAGGGACTTTTTCTACAGG 60.355 54.545 0.00 0.00 41.55 4.00
5760 6011 2.026169 GGGAGGGACTTTTTCTACAGGG 60.026 54.545 0.00 0.00 41.55 4.45
5761 6012 2.910977 GGAGGGACTTTTTCTACAGGGA 59.089 50.000 0.00 0.00 41.55 4.20
5762 6013 3.307550 GGAGGGACTTTTTCTACAGGGAC 60.308 52.174 0.00 0.00 41.55 4.46
5763 6014 3.583526 GAGGGACTTTTTCTACAGGGACT 59.416 47.826 0.00 0.00 41.55 3.85
5764 6015 4.759953 AGGGACTTTTTCTACAGGGACTA 58.240 43.478 0.00 0.00 28.08 2.59
5765 6016 4.778427 AGGGACTTTTTCTACAGGGACTAG 59.222 45.833 0.00 0.00 28.08 2.57
5766 6017 4.776308 GGGACTTTTTCTACAGGGACTAGA 59.224 45.833 0.00 0.00 36.02 2.43
5767 6018 5.247792 GGGACTTTTTCTACAGGGACTAGAA 59.752 44.000 0.00 0.00 36.02 2.10
5768 6019 6.239800 GGGACTTTTTCTACAGGGACTAGAAA 60.240 42.308 0.00 0.00 38.08 2.52
5769 6020 7.222161 GGACTTTTTCTACAGGGACTAGAAAA 58.778 38.462 0.00 8.58 43.60 2.29
5773 6024 8.672823 TTTTTCTACAGGGACTAGAAAAAGAC 57.327 34.615 16.61 0.00 46.05 3.01
5774 6025 7.613551 TTTCTACAGGGACTAGAAAAAGACT 57.386 36.000 0.00 0.00 37.31 3.24
5775 6026 6.837471 TCTACAGGGACTAGAAAAAGACTC 57.163 41.667 0.00 0.00 36.02 3.36
5776 6027 6.553857 TCTACAGGGACTAGAAAAAGACTCT 58.446 40.000 0.00 0.00 36.02 3.24
5777 6028 7.696981 TCTACAGGGACTAGAAAAAGACTCTA 58.303 38.462 0.00 0.00 36.02 2.43
5778 6029 6.593268 ACAGGGACTAGAAAAAGACTCTAC 57.407 41.667 0.00 0.00 36.02 2.59
5779 6030 6.316513 ACAGGGACTAGAAAAAGACTCTACT 58.683 40.000 0.00 0.00 36.02 2.57
5780 6031 7.468496 ACAGGGACTAGAAAAAGACTCTACTA 58.532 38.462 0.00 0.00 36.02 1.82
5781 6032 7.612633 ACAGGGACTAGAAAAAGACTCTACTAG 59.387 40.741 0.00 0.00 36.02 2.57
5782 6033 7.830201 CAGGGACTAGAAAAAGACTCTACTAGA 59.170 40.741 0.00 0.00 36.02 2.43
5783 6034 8.050930 AGGGACTAGAAAAAGACTCTACTAGAG 58.949 40.741 11.06 11.06 42.94 2.43
5837 6088 4.618920 GTCCTAGGACTTCTGAACCAAA 57.381 45.455 31.12 0.00 41.57 3.28
5838 6089 4.316645 GTCCTAGGACTTCTGAACCAAAC 58.683 47.826 31.12 3.26 41.57 2.93
5839 6090 3.971305 TCCTAGGACTTCTGAACCAAACA 59.029 43.478 7.62 0.00 0.00 2.83
5840 6091 4.065789 CCTAGGACTTCTGAACCAAACAC 58.934 47.826 1.05 0.00 0.00 3.32
5841 6092 2.932261 AGGACTTCTGAACCAAACACC 58.068 47.619 0.58 0.00 0.00 4.16
5842 6093 1.954382 GGACTTCTGAACCAAACACCC 59.046 52.381 0.00 0.00 0.00 4.61
5843 6094 1.954382 GACTTCTGAACCAAACACCCC 59.046 52.381 0.00 0.00 0.00 4.95
5856 6107 0.034089 ACACCCCCTTAAGAGCATGC 60.034 55.000 10.51 10.51 0.00 4.06
5964 6240 2.846039 CATGAATGCAGTGCCTTCTC 57.154 50.000 26.68 13.23 34.98 2.87
5965 6241 2.366533 CATGAATGCAGTGCCTTCTCT 58.633 47.619 26.68 15.36 34.98 3.10
5966 6242 3.538591 CATGAATGCAGTGCCTTCTCTA 58.461 45.455 26.68 12.62 34.98 2.43
5967 6243 3.920231 TGAATGCAGTGCCTTCTCTAT 57.080 42.857 26.68 5.49 34.98 1.98
5968 6244 3.538591 TGAATGCAGTGCCTTCTCTATG 58.461 45.455 26.68 0.00 34.98 2.23
5969 6245 3.198417 TGAATGCAGTGCCTTCTCTATGA 59.802 43.478 26.68 8.96 34.98 2.15
5970 6246 2.680312 TGCAGTGCCTTCTCTATGAC 57.320 50.000 13.72 0.00 0.00 3.06
5971 6247 1.901833 TGCAGTGCCTTCTCTATGACA 59.098 47.619 13.72 0.00 0.00 3.58
5972 6248 2.502947 TGCAGTGCCTTCTCTATGACAT 59.497 45.455 13.72 0.00 0.00 3.06
5973 6249 3.054875 TGCAGTGCCTTCTCTATGACATT 60.055 43.478 13.72 0.00 0.00 2.71
5974 6250 3.944015 GCAGTGCCTTCTCTATGACATTT 59.056 43.478 2.85 0.00 0.00 2.32
5975 6251 4.397417 GCAGTGCCTTCTCTATGACATTTT 59.603 41.667 2.85 0.00 0.00 1.82
5976 6252 5.105997 GCAGTGCCTTCTCTATGACATTTTT 60.106 40.000 2.85 0.00 0.00 1.94
6224 6500 8.115490 AGGCAATAGGATATTCATAGCAAAAC 57.885 34.615 0.00 0.00 0.00 2.43
6226 6502 8.025445 GGCAATAGGATATTCATAGCAAAACTG 58.975 37.037 0.00 0.00 0.00 3.16
6252 6528 5.352284 AGTAGCATTCAAAGAGGATACACG 58.648 41.667 0.00 0.00 41.41 4.49
6258 6535 6.403636 GCATTCAAAGAGGATACACGTCATTT 60.404 38.462 0.00 0.00 41.41 2.32
6271 6548 4.211389 CACGTCATTTCACAAGTGTTAGC 58.789 43.478 0.00 0.00 0.00 3.09
6339 8811 4.902448 AGAAGGTTTCAGTGAGTCCTTACT 59.098 41.667 22.36 18.57 38.42 2.24
6483 8991 6.435904 TCCAGTAGGTTCCCAAATTAATGTTG 59.564 38.462 0.00 0.00 35.89 3.33
6569 9080 7.924412 GGTTACTATCGACAAAGAATCCACATA 59.076 37.037 0.00 0.00 0.00 2.29
6635 9146 4.091509 GCAACCACTCAAGTACATAACTCG 59.908 45.833 0.00 0.00 37.50 4.18
6665 9181 0.774276 TATGGTTGTGAACTGCCCCA 59.226 50.000 0.00 0.00 0.00 4.96
7014 9534 2.238144 CACCATCTCTCAGTCCAACCAT 59.762 50.000 0.00 0.00 0.00 3.55
7189 9709 3.575687 CCTTCAGGGAAAATTCAGCAACT 59.424 43.478 0.00 0.00 37.23 3.16
7192 9712 5.241403 TCAGGGAAAATTCAGCAACTAGA 57.759 39.130 0.00 0.00 0.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 38 3.825160 ATGGTGCACGAGGTTGCGT 62.825 57.895 11.45 0.00 46.20 5.24
60 62 1.760613 AGGTGTCTCGTTGAAGTCCAA 59.239 47.619 0.00 0.00 0.00 3.53
61 63 1.068588 CAGGTGTCTCGTTGAAGTCCA 59.931 52.381 0.00 0.00 0.00 4.02
62 64 1.784525 CAGGTGTCTCGTTGAAGTCC 58.215 55.000 0.00 0.00 0.00 3.85
116 122 7.342026 AGGAAGTGGTATGAAAGTTTTGAGTTT 59.658 33.333 0.00 0.00 0.00 2.66
120 126 6.713450 GGTAGGAAGTGGTATGAAAGTTTTGA 59.287 38.462 0.00 0.00 0.00 2.69
135 141 2.224450 ACCAAGGAAACGGTAGGAAGTG 60.224 50.000 0.00 0.00 32.31 3.16
136 142 2.052468 ACCAAGGAAACGGTAGGAAGT 58.948 47.619 0.00 0.00 32.31 3.01
137 143 2.853235 ACCAAGGAAACGGTAGGAAG 57.147 50.000 0.00 0.00 32.31 3.46
147 161 5.912892 GGATTGAGAAACAAACCAAGGAAA 58.087 37.500 0.00 0.00 46.33 3.13
343 358 1.541672 GGAGAGGGAGAGGGAGAGG 59.458 68.421 0.00 0.00 0.00 3.69
345 360 0.996762 GAGGGAGAGGGAGAGGGAGA 60.997 65.000 0.00 0.00 0.00 3.71
346 361 0.998945 AGAGGGAGAGGGAGAGGGAG 60.999 65.000 0.00 0.00 0.00 4.30
347 362 0.996762 GAGAGGGAGAGGGAGAGGGA 60.997 65.000 0.00 0.00 0.00 4.20
348 363 1.541672 GAGAGGGAGAGGGAGAGGG 59.458 68.421 0.00 0.00 0.00 4.30
349 364 1.541672 GGAGAGGGAGAGGGAGAGG 59.458 68.421 0.00 0.00 0.00 3.69
350 365 0.998945 AGGGAGAGGGAGAGGGAGAG 60.999 65.000 0.00 0.00 0.00 3.20
351 366 0.996762 GAGGGAGAGGGAGAGGGAGA 60.997 65.000 0.00 0.00 0.00 3.71
352 367 0.998945 AGAGGGAGAGGGAGAGGGAG 60.999 65.000 0.00 0.00 0.00 4.30
353 368 0.996762 GAGAGGGAGAGGGAGAGGGA 60.997 65.000 0.00 0.00 0.00 4.20
354 369 1.541672 GAGAGGGAGAGGGAGAGGG 59.458 68.421 0.00 0.00 0.00 4.30
355 370 1.541672 GGAGAGGGAGAGGGAGAGG 59.458 68.421 0.00 0.00 0.00 3.69
356 371 0.998945 AGGGAGAGGGAGAGGGAGAG 60.999 65.000 0.00 0.00 0.00 3.20
357 372 0.996762 GAGGGAGAGGGAGAGGGAGA 60.997 65.000 0.00 0.00 0.00 3.71
358 373 0.998945 AGAGGGAGAGGGAGAGGGAG 60.999 65.000 0.00 0.00 0.00 4.30
359 374 0.556380 AAGAGGGAGAGGGAGAGGGA 60.556 60.000 0.00 0.00 0.00 4.20
360 375 0.105709 GAAGAGGGAGAGGGAGAGGG 60.106 65.000 0.00 0.00 0.00 4.30
361 376 0.933700 AGAAGAGGGAGAGGGAGAGG 59.066 60.000 0.00 0.00 0.00 3.69
362 377 1.568597 TGAGAAGAGGGAGAGGGAGAG 59.431 57.143 0.00 0.00 0.00 3.20
363 378 1.286553 GTGAGAAGAGGGAGAGGGAGA 59.713 57.143 0.00 0.00 0.00 3.71
364 379 1.006519 TGTGAGAAGAGGGAGAGGGAG 59.993 57.143 0.00 0.00 0.00 4.30
365 380 1.084866 TGTGAGAAGAGGGAGAGGGA 58.915 55.000 0.00 0.00 0.00 4.20
366 381 1.190643 GTGTGAGAAGAGGGAGAGGG 58.809 60.000 0.00 0.00 0.00 4.30
367 382 1.824230 CAGTGTGAGAAGAGGGAGAGG 59.176 57.143 0.00 0.00 0.00 3.69
373 388 0.389166 GCGGTCAGTGTGAGAAGAGG 60.389 60.000 0.00 0.00 0.00 3.69
410 432 4.832590 TTTGCTTGGATTTGGCAAATTG 57.167 36.364 25.02 16.19 46.45 2.32
429 451 0.966179 GGCAGGTTCCATCCGTTTTT 59.034 50.000 0.00 0.00 0.00 1.94
434 456 0.180171 TGTATGGCAGGTTCCATCCG 59.820 55.000 0.00 0.00 43.00 4.18
435 457 1.972872 CTGTATGGCAGGTTCCATCC 58.027 55.000 0.00 0.00 43.00 3.51
436 458 1.312815 GCTGTATGGCAGGTTCCATC 58.687 55.000 0.00 0.00 43.00 3.51
437 459 2.812208 TGGCTGTATGGCAGGTTCCAT 61.812 52.381 0.00 0.69 46.76 3.41
438 460 1.302949 GGCTGTATGGCAGGTTCCA 59.697 57.895 0.00 0.00 45.14 3.53
439 461 1.302949 TGGCTGTATGGCAGGTTCC 59.697 57.895 0.00 0.00 46.76 3.62
446 468 1.544724 TCTTTGGTTGGCTGTATGGC 58.455 50.000 0.00 0.00 42.18 4.40
447 469 5.913137 TTATTCTTTGGTTGGCTGTATGG 57.087 39.130 0.00 0.00 0.00 2.74
450 472 6.480763 TCTGATTATTCTTTGGTTGGCTGTA 58.519 36.000 0.00 0.00 0.00 2.74
452 474 5.902613 TCTGATTATTCTTTGGTTGGCTG 57.097 39.130 0.00 0.00 0.00 4.85
474 498 9.281371 CATCTTCTGTGAAATGTGGACATATAT 57.719 33.333 0.00 0.00 35.10 0.86
475 499 8.485392 TCATCTTCTGTGAAATGTGGACATATA 58.515 33.333 0.00 0.00 35.10 0.86
476 500 7.341030 TCATCTTCTGTGAAATGTGGACATAT 58.659 34.615 0.00 0.00 35.10 1.78
477 501 6.710278 TCATCTTCTGTGAAATGTGGACATA 58.290 36.000 0.00 0.00 35.10 2.29
479 503 4.971939 TCATCTTCTGTGAAATGTGGACA 58.028 39.130 0.00 0.00 0.00 4.02
480 504 5.239306 TGTTCATCTTCTGTGAAATGTGGAC 59.761 40.000 0.00 0.00 37.34 4.02
490 532 4.201753 CCGTGCTTATGTTCATCTTCTGTG 60.202 45.833 0.00 0.00 0.00 3.66
492 534 3.242543 GCCGTGCTTATGTTCATCTTCTG 60.243 47.826 0.00 0.00 0.00 3.02
493 535 2.939103 GCCGTGCTTATGTTCATCTTCT 59.061 45.455 0.00 0.00 0.00 2.85
529 571 7.121611 TGTCATGTCATGCTGATTCTACATTTT 59.878 33.333 8.03 0.00 0.00 1.82
530 572 6.600427 TGTCATGTCATGCTGATTCTACATTT 59.400 34.615 8.03 0.00 0.00 2.32
531 573 6.117488 TGTCATGTCATGCTGATTCTACATT 58.883 36.000 8.03 0.00 0.00 2.71
558 600 7.282224 TCAAGTGTTCTGTAGTAATTTGTTGCT 59.718 33.333 0.00 0.00 0.00 3.91
571 613 8.690884 TCCAAATTTCATTTCAAGTGTTCTGTA 58.309 29.630 0.00 0.00 0.00 2.74
572 614 7.555087 TCCAAATTTCATTTCAAGTGTTCTGT 58.445 30.769 0.00 0.00 0.00 3.41
573 615 8.422973 TTCCAAATTTCATTTCAAGTGTTCTG 57.577 30.769 0.00 0.00 0.00 3.02
608 650 2.229784 GCTTGGAGGAATCAGGTTTGTG 59.770 50.000 0.00 0.00 0.00 3.33
619 661 7.789831 CCCCTATGTATATATAGCTTGGAGGAA 59.210 40.741 10.26 0.00 30.84 3.36
627 673 6.125741 ACCTGCTCCCCTATGTATATATAGCT 60.126 42.308 10.26 0.00 30.84 3.32
854 923 1.469335 TTGGGACAGGGACGAGTGAC 61.469 60.000 0.00 0.00 42.39 3.67
864 944 0.179034 GGCTGCTATCTTGGGACAGG 60.179 60.000 0.00 0.00 42.39 4.00
866 946 0.913934 TGGGCTGCTATCTTGGGACA 60.914 55.000 0.00 0.00 0.00 4.02
879 959 0.535780 TGAGAGTTTGTGCTGGGCTG 60.536 55.000 0.00 0.00 0.00 4.85
896 976 5.474532 CACTTTTGGAAGAGAATGACCATGA 59.525 40.000 0.00 0.00 36.69 3.07
899 979 5.047566 TCACTTTTGGAAGAGAATGACCA 57.952 39.130 0.00 0.00 36.69 4.02
901 981 5.760253 TGTCTCACTTTTGGAAGAGAATGAC 59.240 40.000 0.00 0.00 38.70 3.06
926 1006 5.468540 AGTAGAAAACCCTCCATTTTTGC 57.531 39.130 0.00 0.00 29.44 3.68
927 1007 5.699839 CGAGTAGAAAACCCTCCATTTTTG 58.300 41.667 0.00 0.00 29.44 2.44
932 1012 1.209747 GGCGAGTAGAAAACCCTCCAT 59.790 52.381 0.00 0.00 0.00 3.41
933 1013 0.611714 GGCGAGTAGAAAACCCTCCA 59.388 55.000 0.00 0.00 0.00 3.86
934 1014 0.903236 AGGCGAGTAGAAAACCCTCC 59.097 55.000 0.00 0.00 0.00 4.30
935 1015 1.469423 CGAGGCGAGTAGAAAACCCTC 60.469 57.143 0.00 0.00 36.40 4.30
936 1016 0.531200 CGAGGCGAGTAGAAAACCCT 59.469 55.000 0.00 0.00 0.00 4.34
937 1017 1.082679 GCGAGGCGAGTAGAAAACCC 61.083 60.000 0.00 0.00 0.00 4.11
938 1018 2.370885 GCGAGGCGAGTAGAAAACC 58.629 57.895 0.00 0.00 0.00 3.27
964 1064 2.479275 CAGATGATGATGCGGCAACTAG 59.521 50.000 6.82 0.00 0.00 2.57
1007 1165 4.527583 GGAGGAGCCGCAGAGCTG 62.528 72.222 0.00 0.00 45.15 4.24
1052 1210 3.108289 CGACGTGGTCAGCAGCTG 61.108 66.667 17.10 17.10 32.09 4.24
1059 1217 2.725641 CACAGGTCGACGTGGTCA 59.274 61.111 33.95 0.00 36.17 4.02
1206 1364 4.143543 TGTGGTTCAGCTTCATCAAATCA 58.856 39.130 0.00 0.00 0.00 2.57
1334 1492 3.192844 TCTGCAGTTAGTAAGGGAACTCG 59.807 47.826 14.67 0.00 42.68 4.18
1340 1498 4.160439 TCAGACATCTGCAGTTAGTAAGGG 59.840 45.833 14.67 0.00 43.46 3.95
1342 1500 5.960113 AGTCAGACATCTGCAGTTAGTAAG 58.040 41.667 14.67 7.08 43.46 2.34
1344 1502 5.124617 CAGAGTCAGACATCTGCAGTTAGTA 59.875 44.000 14.67 0.00 43.46 1.82
1347 1505 3.829026 ACAGAGTCAGACATCTGCAGTTA 59.171 43.478 21.02 0.00 45.56 2.24
1350 1508 2.994578 CAACAGAGTCAGACATCTGCAG 59.005 50.000 21.02 7.63 45.56 4.41
1355 1513 3.037431 ACAGCAACAGAGTCAGACATC 57.963 47.619 2.66 0.00 0.00 3.06
1403 1561 3.851976 GTCAGGTTGTATGACTCGTCT 57.148 47.619 0.00 0.00 43.03 4.18
1430 1588 1.065926 TGCAGTGGCTCTCCTATTGTG 60.066 52.381 0.00 0.00 41.91 3.33
1508 1666 4.134379 TCTGATGTCTTTCCAGAGCATC 57.866 45.455 0.00 0.00 37.70 3.91
1576 1736 4.511527 ACTCTGTCAGGCAATTATCACAG 58.488 43.478 0.00 0.00 33.90 3.66
1808 1968 5.480422 TCATGCCTTGTGATATACTCCGTAT 59.520 40.000 0.00 0.00 33.05 3.06
1831 1993 6.378710 AGCACAAAAGAGAAAACTACCTTC 57.621 37.500 0.00 0.00 0.00 3.46
1889 2051 3.181438 TGTTGGTAACCAGGTTACAGCAT 60.181 43.478 34.04 3.98 46.94 3.79
1958 2120 9.844790 TCATAAGTTTGAACACATCATTCATTC 57.155 29.630 0.00 0.00 38.03 2.67
1964 2126 9.850628 CATCTTTCATAAGTTTGAACACATCAT 57.149 29.630 0.00 0.00 35.42 2.45
1978 2140 3.544834 CGTCGGCTTGCATCTTTCATAAG 60.545 47.826 0.00 0.00 0.00 1.73
2130 2292 7.944554 TGGATCACCTCAAAGAAGATTTAGTTT 59.055 33.333 0.00 0.00 37.04 2.66
2131 2293 7.461749 TGGATCACCTCAAAGAAGATTTAGTT 58.538 34.615 0.00 0.00 37.04 2.24
2132 2294 7.020827 TGGATCACCTCAAAGAAGATTTAGT 57.979 36.000 0.00 0.00 37.04 2.24
2133 2295 7.391554 TGTTGGATCACCTCAAAGAAGATTTAG 59.608 37.037 0.00 0.00 37.04 1.85
2134 2296 7.230747 TGTTGGATCACCTCAAAGAAGATTTA 58.769 34.615 0.00 0.00 37.04 1.40
2171 2333 4.082571 AGTTGGCTAAATGTCTGCATTCAC 60.083 41.667 0.00 0.00 43.89 3.18
2220 2382 4.681781 CGGAGCTGAGTTGAGTCCAATAAT 60.682 45.833 0.00 0.00 34.39 1.28
2512 2677 0.536687 AATCATGAGCAGGATGGGCG 60.537 55.000 0.09 0.00 35.86 6.13
2573 2738 2.338577 ATGCCTTGAGGTATCTGCAC 57.661 50.000 0.00 0.00 35.53 4.57
2668 2833 9.277783 GTATTTCGGTACAGAGGAGTAGTATTA 57.722 37.037 0.00 0.00 0.00 0.98
2780 2946 6.741992 ACGCAATGATATTTTGAAGTCTCA 57.258 33.333 4.10 0.00 0.00 3.27
2801 2967 9.458374 AAAACTAATGTGGAGAAAACATAAACG 57.542 29.630 0.00 0.00 37.27 3.60
3307 3475 0.585357 CTTACCATGAGCGAGCATGC 59.415 55.000 10.51 10.51 43.30 4.06
3520 3701 4.621274 GCATTAGGAAGCCAGCATTTTCAA 60.621 41.667 0.00 0.00 0.00 2.69
3543 3781 5.929415 ACAAAGTTTATAATTGTTTGCGGGG 59.071 36.000 11.69 0.00 33.73 5.73
3604 3842 2.416547 GACATCACGGAATTGTGGACTG 59.583 50.000 0.00 0.00 40.31 3.51
3674 3912 4.176271 GCACATTTGAACTCCAATAAGGC 58.824 43.478 0.00 0.00 37.29 4.35
4157 4397 8.812972 AGGTTCACTGTTCAGTAATACTATGAA 58.187 33.333 5.11 0.00 0.00 2.57
4430 4673 6.593770 TCAACACAAAATATCTGTATGCGTCT 59.406 34.615 0.00 0.00 0.00 4.18
4433 4676 7.003939 TCTCAACACAAAATATCTGTATGCG 57.996 36.000 0.00 0.00 0.00 4.73
4709 4960 8.200792 AGTCCTACAGTACATTGAAGATTCATC 58.799 37.037 0.00 0.00 37.00 2.92
4727 4978 9.886132 GAGTCTAATTCCATTTTAAGTCCTACA 57.114 33.333 0.00 0.00 0.00 2.74
4728 4979 9.886132 TGAGTCTAATTCCATTTTAAGTCCTAC 57.114 33.333 0.00 0.00 0.00 3.18
4737 4988 9.860898 GCTTGTAAATGAGTCTAATTCCATTTT 57.139 29.630 0.00 0.00 39.23 1.82
4767 5018 9.176460 TGTGAGCATAAATGTCAAGAATAATGA 57.824 29.630 0.00 0.00 0.00 2.57
4772 5023 8.565896 TTACTGTGAGCATAAATGTCAAGAAT 57.434 30.769 0.00 0.00 0.00 2.40
4848 5099 6.435277 AGCCTGTTAATTTATGAGCATATGGG 59.565 38.462 4.56 0.00 0.00 4.00
4857 5108 4.285863 CCCCCAAGCCTGTTAATTTATGA 58.714 43.478 0.00 0.00 0.00 2.15
5078 5329 7.547227 GTGGCCAAATAGTTTGTTCAATATCT 58.453 34.615 7.24 0.00 38.98 1.98
5179 5430 5.648178 TTTGATAACACAATGCATGCTCT 57.352 34.783 20.33 3.10 0.00 4.09
5278 5529 6.401474 CCGATTTGAATATGTCTAATCAGGCG 60.401 42.308 15.15 0.00 44.19 5.52
5354 5605 1.136169 CATCCATCGCGTGTGCATATG 60.136 52.381 5.77 0.00 42.97 1.78
5364 5615 1.856802 TCATTCAGACATCCATCGCG 58.143 50.000 0.00 0.00 0.00 5.87
5518 5769 6.884280 ATGTGCTAAACTATTTATGCCCTC 57.116 37.500 0.00 0.00 0.00 4.30
5627 5878 7.724506 CCGATATATAGGGTATAGCAAGAGGAA 59.275 40.741 4.02 0.00 0.00 3.36
5661 5912 2.514803 CTGAACCAAACACCCCCTAAG 58.485 52.381 0.00 0.00 0.00 2.18
5662 5913 1.146152 CCTGAACCAAACACCCCCTAA 59.854 52.381 0.00 0.00 0.00 2.69
5663 5914 0.774908 CCTGAACCAAACACCCCCTA 59.225 55.000 0.00 0.00 0.00 3.53
5664 5915 1.541672 CCTGAACCAAACACCCCCT 59.458 57.895 0.00 0.00 0.00 4.79
5665 5916 1.533033 CCCTGAACCAAACACCCCC 60.533 63.158 0.00 0.00 0.00 5.40
5666 5917 0.826256 GTCCCTGAACCAAACACCCC 60.826 60.000 0.00 0.00 0.00 4.95
5667 5918 0.185175 AGTCCCTGAACCAAACACCC 59.815 55.000 0.00 0.00 0.00 4.61
5668 5919 2.067365 AAGTCCCTGAACCAAACACC 57.933 50.000 0.00 0.00 0.00 4.16
5669 5920 4.465632 AAAAAGTCCCTGAACCAAACAC 57.534 40.909 0.00 0.00 0.00 3.32
5670 5921 5.265989 ACTAAAAAGTCCCTGAACCAAACA 58.734 37.500 0.00 0.00 0.00 2.83
5671 5922 5.828747 GACTAAAAAGTCCCTGAACCAAAC 58.171 41.667 0.00 0.00 32.97 2.93
5692 5943 6.211587 GGGACTTTTTCTAGTCTCTAGGAC 57.788 45.833 0.00 3.84 41.50 3.85
5698 5949 8.905660 ACTTTTTAGGGACTTTTTCTAGTCTC 57.094 34.615 0.00 0.00 44.42 3.36
5699 5950 7.937942 GGACTTTTTAGGGACTTTTTCTAGTCT 59.062 37.037 0.00 0.00 43.26 3.24
5700 5951 7.174599 GGGACTTTTTAGGGACTTTTTCTAGTC 59.825 40.741 0.00 0.00 43.05 2.59
5701 5952 7.002879 GGGACTTTTTAGGGACTTTTTCTAGT 58.997 38.462 0.00 0.00 41.75 2.57
5702 5953 7.232188 AGGGACTTTTTAGGGACTTTTTCTAG 58.768 38.462 0.00 0.00 34.75 2.43
5703 5954 7.157947 AGGGACTTTTTAGGGACTTTTTCTA 57.842 36.000 0.00 0.00 34.75 2.10
5704 5955 6.027025 AGGGACTTTTTAGGGACTTTTTCT 57.973 37.500 0.00 0.00 34.75 2.52
5705 5956 6.433404 CCTAGGGACTTTTTAGGGACTTTTTC 59.567 42.308 0.00 0.00 39.49 2.29
5706 5957 6.103649 TCCTAGGGACTTTTTAGGGACTTTTT 59.896 38.462 9.46 0.00 39.49 1.94
5707 5958 5.613973 TCCTAGGGACTTTTTAGGGACTTTT 59.386 40.000 9.46 0.00 39.49 2.27
5708 5959 5.167921 TCCTAGGGACTTTTTAGGGACTTT 58.832 41.667 9.46 0.00 39.49 2.66
5709 5960 4.771338 TCCTAGGGACTTTTTAGGGACTT 58.229 43.478 9.46 0.00 39.49 3.01
5710 5961 4.431158 TCCTAGGGACTTTTTAGGGACT 57.569 45.455 9.46 0.00 41.75 3.85
5711 5962 4.324099 GGTTCCTAGGGACTTTTTAGGGAC 60.324 50.000 20.08 0.45 40.79 4.46
5712 5963 3.848377 GGTTCCTAGGGACTTTTTAGGGA 59.152 47.826 20.08 0.00 41.75 4.20
5713 5964 3.590182 TGGTTCCTAGGGACTTTTTAGGG 59.410 47.826 20.08 0.00 41.75 3.53
5714 5965 4.921644 TGGTTCCTAGGGACTTTTTAGG 57.078 45.455 20.08 0.00 41.75 2.69
5715 5966 5.180680 CGTTTGGTTCCTAGGGACTTTTTAG 59.819 44.000 20.08 4.22 41.75 1.85
5716 5967 5.065235 CGTTTGGTTCCTAGGGACTTTTTA 58.935 41.667 20.08 0.00 41.75 1.52
5717 5968 3.887110 CGTTTGGTTCCTAGGGACTTTTT 59.113 43.478 20.08 0.00 41.75 1.94
5718 5969 3.483421 CGTTTGGTTCCTAGGGACTTTT 58.517 45.455 20.08 0.00 41.75 2.27
5719 5970 2.224695 CCGTTTGGTTCCTAGGGACTTT 60.225 50.000 20.08 0.00 41.75 2.66
5720 5971 1.350019 CCGTTTGGTTCCTAGGGACTT 59.650 52.381 20.08 0.00 41.75 3.01
5721 5972 0.981943 CCGTTTGGTTCCTAGGGACT 59.018 55.000 20.08 0.00 46.37 3.85
5722 5973 0.035725 CCCGTTTGGTTCCTAGGGAC 60.036 60.000 12.35 12.35 41.26 4.46
5723 5974 0.178897 TCCCGTTTGGTTCCTAGGGA 60.179 55.000 9.46 0.00 44.85 4.20
5724 5975 0.252197 CTCCCGTTTGGTTCCTAGGG 59.748 60.000 9.46 0.00 40.16 3.53
5725 5976 0.252197 CCTCCCGTTTGGTTCCTAGG 59.748 60.000 0.82 0.82 34.77 3.02
5726 5977 0.252197 CCCTCCCGTTTGGTTCCTAG 59.748 60.000 0.00 0.00 34.77 3.02
5727 5978 0.178897 TCCCTCCCGTTTGGTTCCTA 60.179 55.000 0.00 0.00 34.77 2.94
5728 5979 1.462627 TCCCTCCCGTTTGGTTCCT 60.463 57.895 0.00 0.00 34.77 3.36
5729 5980 1.303074 GTCCCTCCCGTTTGGTTCC 60.303 63.158 0.00 0.00 34.77 3.62
5730 5981 0.109913 AAGTCCCTCCCGTTTGGTTC 59.890 55.000 0.00 0.00 34.77 3.62
5731 5982 0.554305 AAAGTCCCTCCCGTTTGGTT 59.446 50.000 0.00 0.00 34.77 3.67
5732 5983 0.554305 AAAAGTCCCTCCCGTTTGGT 59.446 50.000 0.00 0.00 34.77 3.67
5733 5984 1.611977 GAAAAAGTCCCTCCCGTTTGG 59.388 52.381 0.00 0.00 0.00 3.28
5734 5985 2.583143 AGAAAAAGTCCCTCCCGTTTG 58.417 47.619 0.00 0.00 0.00 2.93
5735 5986 3.136992 TGTAGAAAAAGTCCCTCCCGTTT 59.863 43.478 0.00 0.00 0.00 3.60
5736 5987 2.707257 TGTAGAAAAAGTCCCTCCCGTT 59.293 45.455 0.00 0.00 0.00 4.44
5737 5988 2.302157 CTGTAGAAAAAGTCCCTCCCGT 59.698 50.000 0.00 0.00 0.00 5.28
5738 5989 2.354805 CCTGTAGAAAAAGTCCCTCCCG 60.355 54.545 0.00 0.00 0.00 5.14
5739 5990 2.026169 CCCTGTAGAAAAAGTCCCTCCC 60.026 54.545 0.00 0.00 0.00 4.30
5740 5991 2.910977 TCCCTGTAGAAAAAGTCCCTCC 59.089 50.000 0.00 0.00 0.00 4.30
5741 5992 3.583526 AGTCCCTGTAGAAAAAGTCCCTC 59.416 47.826 0.00 0.00 0.00 4.30
5742 5993 3.599348 AGTCCCTGTAGAAAAAGTCCCT 58.401 45.455 0.00 0.00 0.00 4.20
5743 5994 4.776308 TCTAGTCCCTGTAGAAAAAGTCCC 59.224 45.833 0.00 0.00 0.00 4.46
5744 5995 5.997384 TCTAGTCCCTGTAGAAAAAGTCC 57.003 43.478 0.00 0.00 0.00 3.85
5750 6001 7.509659 AGAGTCTTTTTCTAGTCCCTGTAGAAA 59.490 37.037 1.96 1.96 42.24 2.52
5751 6002 7.011382 AGAGTCTTTTTCTAGTCCCTGTAGAA 58.989 38.462 0.00 0.00 35.21 2.10
5752 6003 6.553857 AGAGTCTTTTTCTAGTCCCTGTAGA 58.446 40.000 0.00 0.00 0.00 2.59
5753 6004 6.844097 AGAGTCTTTTTCTAGTCCCTGTAG 57.156 41.667 0.00 0.00 0.00 2.74
5754 6005 7.468496 AGTAGAGTCTTTTTCTAGTCCCTGTA 58.532 38.462 0.00 0.00 0.00 2.74
5755 6006 6.316513 AGTAGAGTCTTTTTCTAGTCCCTGT 58.683 40.000 0.00 0.00 0.00 4.00
5756 6007 6.844097 AGTAGAGTCTTTTTCTAGTCCCTG 57.156 41.667 0.00 0.00 0.00 4.45
5757 6008 7.931046 TCTAGTAGAGTCTTTTTCTAGTCCCT 58.069 38.462 0.00 0.00 33.84 4.20
5758 6009 8.217131 CTCTAGTAGAGTCTTTTTCTAGTCCC 57.783 42.308 17.70 0.00 37.57 4.46
5816 6067 4.202326 TGTTTGGTTCAGAAGTCCTAGGAC 60.202 45.833 31.29 31.29 44.86 3.85
5817 6068 3.971305 TGTTTGGTTCAGAAGTCCTAGGA 59.029 43.478 7.62 7.62 0.00 2.94
5818 6069 4.065789 GTGTTTGGTTCAGAAGTCCTAGG 58.934 47.826 0.82 0.82 0.00 3.02
5819 6070 4.065789 GGTGTTTGGTTCAGAAGTCCTAG 58.934 47.826 0.00 0.00 0.00 3.02
5820 6071 3.181448 GGGTGTTTGGTTCAGAAGTCCTA 60.181 47.826 0.00 0.00 0.00 2.94
5821 6072 2.422945 GGGTGTTTGGTTCAGAAGTCCT 60.423 50.000 0.00 0.00 0.00 3.85
5822 6073 1.954382 GGGTGTTTGGTTCAGAAGTCC 59.046 52.381 0.00 0.00 0.00 3.85
5823 6074 1.954382 GGGGTGTTTGGTTCAGAAGTC 59.046 52.381 0.00 0.00 0.00 3.01
5824 6075 1.411074 GGGGGTGTTTGGTTCAGAAGT 60.411 52.381 0.00 0.00 0.00 3.01
5825 6076 1.133482 AGGGGGTGTTTGGTTCAGAAG 60.133 52.381 0.00 0.00 0.00 2.85
5826 6077 0.930726 AGGGGGTGTTTGGTTCAGAA 59.069 50.000 0.00 0.00 0.00 3.02
5827 6078 0.930726 AAGGGGGTGTTTGGTTCAGA 59.069 50.000 0.00 0.00 0.00 3.27
5828 6079 2.668144 TAAGGGGGTGTTTGGTTCAG 57.332 50.000 0.00 0.00 0.00 3.02
5829 6080 2.514582 TCTTAAGGGGGTGTTTGGTTCA 59.485 45.455 1.85 0.00 0.00 3.18
5830 6081 3.154710 CTCTTAAGGGGGTGTTTGGTTC 58.845 50.000 1.85 0.00 0.00 3.62
5831 6082 2.755208 GCTCTTAAGGGGGTGTTTGGTT 60.755 50.000 4.10 0.00 0.00 3.67
5832 6083 1.203013 GCTCTTAAGGGGGTGTTTGGT 60.203 52.381 4.10 0.00 0.00 3.67
5833 6084 1.203001 TGCTCTTAAGGGGGTGTTTGG 60.203 52.381 4.10 0.00 0.00 3.28
5834 6085 2.286365 TGCTCTTAAGGGGGTGTTTG 57.714 50.000 4.10 0.00 0.00 2.93
5835 6086 2.807676 CATGCTCTTAAGGGGGTGTTT 58.192 47.619 4.10 0.00 0.00 2.83
5836 6087 1.616994 GCATGCTCTTAAGGGGGTGTT 60.617 52.381 11.37 0.00 0.00 3.32
5837 6088 0.034089 GCATGCTCTTAAGGGGGTGT 60.034 55.000 11.37 0.00 0.00 4.16
5838 6089 0.257039 AGCATGCTCTTAAGGGGGTG 59.743 55.000 16.30 0.01 0.00 4.61
5839 6090 1.002857 AAGCATGCTCTTAAGGGGGT 58.997 50.000 22.93 0.00 0.00 4.95
5840 6091 2.149973 AAAGCATGCTCTTAAGGGGG 57.850 50.000 22.93 0.00 0.00 5.40
5841 6092 3.620488 TGTAAAGCATGCTCTTAAGGGG 58.380 45.455 22.93 0.00 0.00 4.79
5842 6093 3.065925 GCTGTAAAGCATGCTCTTAAGGG 59.934 47.826 22.93 13.94 34.41 3.95
5843 6094 3.944015 AGCTGTAAAGCATGCTCTTAAGG 59.056 43.478 22.93 15.89 37.25 2.69
5867 6118 5.996513 AGATTGCATATAGGTTCTGCTTCTG 59.003 40.000 0.00 0.00 36.84 3.02
5976 6252 3.398406 TGTCATAGAGCAGTCGCAAAAA 58.602 40.909 0.00 0.00 42.27 1.94
5977 6253 3.038788 TGTCATAGAGCAGTCGCAAAA 57.961 42.857 0.00 0.00 42.27 2.44
5978 6254 2.741759 TGTCATAGAGCAGTCGCAAA 57.258 45.000 0.00 0.00 42.27 3.68
5979 6255 2.967599 ATGTCATAGAGCAGTCGCAA 57.032 45.000 0.00 0.00 42.27 4.85
5980 6256 4.590850 AATATGTCATAGAGCAGTCGCA 57.409 40.909 0.00 0.00 42.27 5.10
5981 6257 5.463392 TCAAAATATGTCATAGAGCAGTCGC 59.537 40.000 0.00 0.00 38.99 5.19
5982 6258 6.699204 AGTCAAAATATGTCATAGAGCAGTCG 59.301 38.462 0.00 0.00 0.00 4.18
5983 6259 7.708322 TGAGTCAAAATATGTCATAGAGCAGTC 59.292 37.037 0.00 0.00 0.00 3.51
5984 6260 7.493971 GTGAGTCAAAATATGTCATAGAGCAGT 59.506 37.037 0.00 0.00 0.00 4.40
5985 6261 7.042187 GGTGAGTCAAAATATGTCATAGAGCAG 60.042 40.741 0.00 0.00 0.00 4.24
5986 6262 6.763135 GGTGAGTCAAAATATGTCATAGAGCA 59.237 38.462 0.00 0.00 0.00 4.26
5987 6263 6.763135 TGGTGAGTCAAAATATGTCATAGAGC 59.237 38.462 0.00 0.00 0.00 4.09
6021 6297 4.997565 TCTCTTCAAGCCAAAACAGTTTG 58.002 39.130 0.00 0.00 43.26 2.93
6224 6500 4.836825 TCCTCTTTGAATGCTACTTCCAG 58.163 43.478 0.00 0.00 0.00 3.86
6226 6502 6.258947 GTGTATCCTCTTTGAATGCTACTTCC 59.741 42.308 0.00 0.00 0.00 3.46
6252 6528 5.673337 TGAGCTAACACTTGTGAAATGAC 57.327 39.130 7.83 0.00 0.00 3.06
6258 6535 2.908688 TGCTGAGCTAACACTTGTGA 57.091 45.000 5.83 0.00 0.00 3.58
6271 6548 8.659925 AACTACTTCAGATTCATAATGCTGAG 57.340 34.615 0.00 0.00 38.48 3.35
6339 8811 6.158695 AGGGGCAGAAATACATAAAGAAGAGA 59.841 38.462 0.00 0.00 0.00 3.10
6483 8991 8.430801 AGAGATCTGATTGTTTGTAATACAGC 57.569 34.615 0.00 0.00 0.00 4.40
6603 9114 4.592942 ACTTGAGTGGTTGCATATGACAT 58.407 39.130 6.97 0.00 0.00 3.06
6635 9146 8.072567 GCAGTTCACAACCATAAATAGATCATC 58.927 37.037 0.00 0.00 0.00 2.92
7014 9534 1.847328 TCGACAAGCCTACCAGATCA 58.153 50.000 0.00 0.00 0.00 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.