Multiple sequence alignment - TraesCS3D01G394900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G394900 chr3D 100.000 6446 0 0 1 6446 510293929 510287484 0.000000e+00 11904.0
1 TraesCS3D01G394900 chr3D 88.435 147 14 2 3858 4002 604112793 604112938 2.390000e-39 174.0
2 TraesCS3D01G394900 chr3B 91.037 1562 84 18 25 1544 672391388 672389841 0.000000e+00 2058.0
3 TraesCS3D01G394900 chr3B 85.354 1188 107 25 2159 3310 672389207 672388051 0.000000e+00 1168.0
4 TraesCS3D01G394900 chr3B 87.154 1012 74 18 3365 4353 672388061 672387083 0.000000e+00 1098.0
5 TraesCS3D01G394900 chr3B 80.629 1399 156 61 4739 6079 672386447 672385106 0.000000e+00 976.0
6 TraesCS3D01G394900 chr3B 91.897 506 29 7 1631 2134 672389846 672389351 0.000000e+00 697.0
7 TraesCS3D01G394900 chr3B 88.931 262 23 5 4482 4739 672386802 672386543 1.040000e-82 318.0
8 TraesCS3D01G394900 chr3B 89.840 187 10 2 6201 6385 672385037 672384858 1.400000e-56 231.0
9 TraesCS3D01G394900 chr3B 95.745 141 5 1 4345 4485 672386992 672386853 6.500000e-55 226.0
10 TraesCS3D01G394900 chr3A 88.800 1250 92 23 1635 2843 647152635 647151393 0.000000e+00 1489.0
11 TraesCS3D01G394900 chr3A 89.056 1133 75 12 3365 4485 647150970 647149875 0.000000e+00 1360.0
12 TraesCS3D01G394900 chr3A 89.168 997 78 9 582 1553 647153636 647152645 0.000000e+00 1216.0
13 TraesCS3D01G394900 chr3A 82.981 993 84 43 4488 5446 647149823 647148882 0.000000e+00 819.0
14 TraesCS3D01G394900 chr3A 84.132 939 46 44 5566 6446 647148737 647147844 0.000000e+00 813.0
15 TraesCS3D01G394900 chr3A 90.286 350 19 11 2900 3238 647151393 647151048 1.650000e-120 444.0
16 TraesCS3D01G394900 chr3A 90.615 309 16 4 188 494 647154038 647153741 1.300000e-106 398.0
17 TraesCS3D01G394900 chr3A 93.678 174 8 3 3 175 647155545 647155374 2.310000e-64 257.0
18 TraesCS3D01G394900 chr6B 86.321 753 54 14 1631 2335 420705181 420705932 0.000000e+00 774.0
19 TraesCS3D01G394900 chr6B 90.167 539 49 2 1007 1544 420704651 420705186 0.000000e+00 699.0
20 TraesCS3D01G394900 chr2B 89.841 315 22 5 1629 1942 45915491 45915796 4.680000e-106 396.0
21 TraesCS3D01G394900 chr2B 88.889 315 22 8 1629 1942 773711131 773710829 6.100000e-100 375.0
22 TraesCS3D01G394900 chr2B 88.328 317 20 10 1629 1942 262470092 262469790 1.320000e-96 364.0
23 TraesCS3D01G394900 chr2B 84.524 168 21 4 3858 4023 414089479 414089643 1.860000e-35 161.0
24 TraesCS3D01G394900 chr1A 89.116 147 13 2 3858 4002 554462259 554462404 5.130000e-41 180.0
25 TraesCS3D01G394900 chr5D 88.435 147 14 2 3858 4002 28034084 28034229 2.390000e-39 174.0
26 TraesCS3D01G394900 chr5D 87.333 150 16 2 3858 4005 503290556 503290704 1.110000e-37 169.0
27 TraesCS3D01G394900 chr5D 92.105 38 2 1 1606 1643 193234709 193234745 1.200000e-02 52.8
28 TraesCS3D01G394900 chr7B 87.838 148 15 2 3858 4003 105253453 105253307 3.090000e-38 171.0
29 TraesCS3D01G394900 chr7B 100.000 32 0 0 1606 1637 380869703 380869734 6.980000e-05 60.2
30 TraesCS3D01G394900 chr7A 87.838 148 15 2 3858 4003 4941655 4941801 3.090000e-38 171.0
31 TraesCS3D01G394900 chr7A 92.308 39 1 2 1606 1643 5051191 5051228 3.000000e-03 54.7
32 TraesCS3D01G394900 chrUn 87.671 146 15 2 3858 4001 385641290 385641434 4.000000e-37 167.0
33 TraesCS3D01G394900 chr1D 93.333 45 3 0 1606 1650 427054861 427054817 4.170000e-07 67.6
34 TraesCS3D01G394900 chr4D 100.000 32 0 0 1606 1637 509340294 509340263 6.980000e-05 60.2
35 TraesCS3D01G394900 chr4A 97.222 36 0 1 1606 1641 713879034 713879068 6.980000e-05 60.2
36 TraesCS3D01G394900 chr5B 94.595 37 1 1 1600 1635 572363753 572363789 1.000000e-03 56.5
37 TraesCS3D01G394900 chr5A 96.970 33 1 0 1606 1638 177605115 177605083 1.000000e-03 56.5
38 TraesCS3D01G394900 chr5A 94.286 35 2 0 1600 1634 490502737 490502771 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G394900 chr3D 510287484 510293929 6445 True 11904.0 11904 100.000000 1 6446 1 chr3D.!!$R1 6445
1 TraesCS3D01G394900 chr3B 672384858 672391388 6530 True 846.5 2058 88.823375 25 6385 8 chr3B.!!$R1 6360
2 TraesCS3D01G394900 chr3A 647147844 647155545 7701 True 849.5 1489 88.589500 3 6446 8 chr3A.!!$R1 6443
3 TraesCS3D01G394900 chr6B 420704651 420705932 1281 False 736.5 774 88.244000 1007 2335 2 chr6B.!!$F1 1328

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
865 2275 0.037232 GCTCGTCACTGCCTTTACCT 60.037 55.0 0.00 0.0 0.00 3.08 F
1542 2969 0.035725 CAGCTTCCATGAGCAGGTGA 60.036 55.0 8.91 0.0 45.12 4.02 F
1610 3037 0.410663 TCCTTCCCTCCCGTCAAGTA 59.589 55.0 0.00 0.0 0.00 2.24 F
3007 4638 0.988832 ATCCGGTAAGGTTCTGGCAA 59.011 50.0 0.00 0.0 41.99 4.52 F
4176 5838 0.251297 TGAACAAGAGGGCATGGTGG 60.251 55.0 0.00 0.0 0.00 4.61 F
5025 6954 0.179124 GGCAGCTTCTCGACAGGTAG 60.179 60.0 0.00 0.0 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2490 4092 0.534412 AGTGATCCAGAAGTCAGGCG 59.466 55.0 0.00 0.0 0.00 5.52 R
3191 4822 0.171231 TCACCTCTTCACGCATCTCG 59.829 55.0 0.00 0.0 45.38 4.04 R
3326 4975 2.454336 AGAGGTGGGACATGTATCGA 57.546 50.0 0.00 0.0 44.52 3.59 R
4974 6903 0.177836 TGGCCGTGTCTACATCATGG 59.822 55.0 0.00 0.0 42.81 3.66 R
5346 7286 0.036732 TGTAACCCAAGCAGAGGCAG 59.963 55.0 0.00 0.0 44.61 4.85 R
5829 7856 0.178932 CCCTGTGGAGATCCCGGATA 60.179 60.0 0.73 0.0 37.93 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 4.700365 CGCGCCACACTCACTCGA 62.700 66.667 0.00 0.00 0.00 4.04
21 22 3.106407 GCGCCACACTCACTCGAC 61.106 66.667 0.00 0.00 0.00 4.20
22 23 2.645567 CGCCACACTCACTCGACT 59.354 61.111 0.00 0.00 0.00 4.18
27 28 2.662700 CCACACTCACTCGACTTACAC 58.337 52.381 0.00 0.00 0.00 2.90
43 44 4.163078 ACTTACACTTGGGATCCATCTCAG 59.837 45.833 15.23 3.82 38.75 3.35
120 121 1.971167 GTCAGTGAATTGGGCCGCA 60.971 57.895 0.00 0.00 0.00 5.69
152 153 7.329717 CGAAGTTATCAGTTTCTCTAGCAGTTT 59.670 37.037 0.00 0.00 0.00 2.66
186 190 1.594310 GCCACCGCTCTTCTCTCTT 59.406 57.895 0.00 0.00 0.00 2.85
232 1559 1.137872 CTTCGCCTGCCTATCTCTGTT 59.862 52.381 0.00 0.00 0.00 3.16
319 1646 1.337260 CCTAGCAACTCACGTGCTTCT 60.337 52.381 11.67 5.84 39.79 2.85
321 1648 1.221414 AGCAACTCACGTGCTTCTTC 58.779 50.000 11.67 0.00 35.02 2.87
322 1649 0.235926 GCAACTCACGTGCTTCTTCC 59.764 55.000 11.67 0.00 0.00 3.46
351 1683 4.399395 CCGCTCCTTCAGGCTGCA 62.399 66.667 10.34 0.00 35.29 4.41
456 1796 1.537562 GGAGGTGACGTCGTTGTCTTT 60.538 52.381 11.62 0.00 39.64 2.52
513 1909 2.639883 TATGCTGCTCTGCCTCTGCG 62.640 60.000 0.00 0.00 41.78 5.18
561 1957 0.994995 GCAGTGTGCTGTACTCGATG 59.005 55.000 0.00 0.00 44.32 3.84
564 1960 1.084370 GTGTGCTGTACTCGATGGCC 61.084 60.000 0.00 0.00 0.00 5.36
574 1970 4.923942 CGATGGCCCGATGCAGCT 62.924 66.667 0.00 0.00 43.89 4.24
575 1971 2.427320 GATGGCCCGATGCAGCTA 59.573 61.111 0.00 0.00 43.89 3.32
576 1972 1.670406 GATGGCCCGATGCAGCTAG 60.670 63.158 0.00 0.00 43.89 3.42
577 1973 2.104572 GATGGCCCGATGCAGCTAGA 62.105 60.000 0.00 0.00 43.89 2.43
578 1974 2.030262 GGCCCGATGCAGCTAGAG 59.970 66.667 0.00 0.00 43.89 2.43
579 1975 2.502492 GGCCCGATGCAGCTAGAGA 61.502 63.158 0.00 0.00 43.89 3.10
580 1976 1.006337 GCCCGATGCAGCTAGAGAG 60.006 63.158 0.00 0.00 40.77 3.20
715 2117 8.037758 ACTTCAGAGTCACTTATTCCTAACATG 58.962 37.037 0.00 0.00 0.00 3.21
725 2130 8.230486 CACTTATTCCTAACATGTGTCAAACTC 58.770 37.037 0.00 0.00 0.00 3.01
740 2145 6.798959 GTGTCAAACTCATTGTATTTCTGCTC 59.201 38.462 0.00 0.00 40.11 4.26
744 2149 5.426689 ACTCATTGTATTTCTGCTCCTCA 57.573 39.130 0.00 0.00 0.00 3.86
755 2160 0.676184 TGCTCCTCACTGTCAGTCAC 59.324 55.000 1.37 0.00 0.00 3.67
768 2173 3.131577 TGTCAGTCACGTGGTTTCTAACT 59.868 43.478 17.00 6.86 0.00 2.24
800 2205 5.010012 ACCTTTTATCTGAAAACTGCACTGG 59.990 40.000 0.00 0.00 0.00 4.00
859 2269 1.139734 CGTATGCTCGTCACTGCCT 59.860 57.895 0.00 0.00 0.00 4.75
865 2275 0.037232 GCTCGTCACTGCCTTTACCT 60.037 55.000 0.00 0.00 0.00 3.08
898 2308 6.892485 TCAGATCATGATATTCAGTGGTGTT 58.108 36.000 8.54 0.00 31.12 3.32
899 2309 6.764560 TCAGATCATGATATTCAGTGGTGTTG 59.235 38.462 8.54 0.00 31.12 3.33
903 2313 7.144722 TCATGATATTCAGTGGTGTTGTTTC 57.855 36.000 0.00 0.00 0.00 2.78
925 2335 5.294356 TCATGCGTGGAATACTGTTATACC 58.706 41.667 5.98 0.00 0.00 2.73
950 2376 7.970061 CCGATGTGAACATTAATGTCTGAAATT 59.030 33.333 21.02 4.00 40.80 1.82
972 2399 9.688592 AAATTTCTGAAGTTTTATCTTGCTCTG 57.311 29.630 5.20 0.00 0.00 3.35
987 2414 1.287730 CTCTGCTGCAGTTGGTCGAC 61.288 60.000 27.24 7.13 32.61 4.20
990 2417 2.738521 CTGCAGTTGGTCGACCGG 60.739 66.667 28.70 18.54 39.43 5.28
1065 2492 3.543665 GAGATTGAGCTGCCAGAAGAAT 58.456 45.455 0.00 0.00 0.00 2.40
1071 2498 0.371645 GCTGCCAGAAGAATCGAACG 59.628 55.000 0.00 0.00 0.00 3.95
1087 2514 5.313520 TCGAACGTCTGTTACCATCAATA 57.686 39.130 0.00 0.00 38.78 1.90
1120 2547 7.062322 TCTTGGTAATAATGGCATGTCAGATT 58.938 34.615 6.04 10.50 0.00 2.40
1222 2649 5.176774 CAGCTGTTACGTGATTTAGTTGACA 59.823 40.000 5.25 0.00 0.00 3.58
1230 2657 4.376008 CGTGATTTAGTTGACAGTGGTTCG 60.376 45.833 0.00 0.00 0.00 3.95
1248 2675 0.108138 CGAGGAAAGGAAGGCACGAT 60.108 55.000 0.00 0.00 0.00 3.73
1260 2687 4.396790 GGAAGGCACGATGTTATTTTACCA 59.603 41.667 0.00 0.00 0.00 3.25
1365 2792 3.226777 ACAGGAGGACGATCAAGATAGG 58.773 50.000 0.00 0.00 0.00 2.57
1412 2839 1.889829 AGACTGTGTGGACTCTACAGC 59.110 52.381 0.00 0.00 44.22 4.40
1417 2844 2.698274 TGTGTGGACTCTACAGCAGAAA 59.302 45.455 0.00 0.00 31.12 2.52
1420 2847 4.865365 GTGTGGACTCTACAGCAGAAATAC 59.135 45.833 0.00 0.00 31.12 1.89
1442 2869 3.225069 CTGCCAAAGCCAAACCCGG 62.225 63.158 0.00 0.00 38.69 5.73
1445 2872 2.650778 CAAAGCCAAACCCGGAGC 59.349 61.111 0.73 0.00 0.00 4.70
1446 2873 1.903404 CAAAGCCAAACCCGGAGCT 60.903 57.895 0.73 0.00 37.10 4.09
1453 2880 2.017049 CCAAACCCGGAGCTAAGAATG 58.983 52.381 0.73 0.00 0.00 2.67
1454 2881 1.401905 CAAACCCGGAGCTAAGAATGC 59.598 52.381 0.73 0.00 0.00 3.56
1455 2882 0.462047 AACCCGGAGCTAAGAATGCG 60.462 55.000 0.73 0.00 35.28 4.73
1464 2891 1.666189 GCTAAGAATGCGGAACAGTCC 59.334 52.381 0.00 0.00 44.51 3.85
1506 2933 3.288809 GAAACTGTTCCTGTGATTGGC 57.711 47.619 0.00 0.00 0.00 4.52
1524 2951 0.604578 GCCCTGCAATGAAAAGAGCA 59.395 50.000 0.00 0.00 35.43 4.26
1539 2966 1.077644 AGCAGCTTCCATGAGCAGG 60.078 57.895 8.91 2.29 45.12 4.85
1540 2967 1.378250 GCAGCTTCCATGAGCAGGT 60.378 57.895 8.91 0.00 45.12 4.00
1541 2968 1.654954 GCAGCTTCCATGAGCAGGTG 61.655 60.000 8.91 10.35 45.12 4.00
1542 2969 0.035725 CAGCTTCCATGAGCAGGTGA 60.036 55.000 8.91 0.00 45.12 4.02
1543 2970 0.917533 AGCTTCCATGAGCAGGTGAT 59.082 50.000 8.91 0.00 45.12 3.06
1544 2971 1.134159 AGCTTCCATGAGCAGGTGATC 60.134 52.381 8.91 0.00 45.12 2.92
1545 2972 1.407851 GCTTCCATGAGCAGGTGATCA 60.408 52.381 0.00 0.00 45.10 2.92
1546 2973 2.942752 GCTTCCATGAGCAGGTGATCAA 60.943 50.000 1.42 0.00 44.14 2.57
1547 2974 3.349927 CTTCCATGAGCAGGTGATCAAA 58.650 45.455 1.42 0.00 44.14 2.69
1548 2975 2.715046 TCCATGAGCAGGTGATCAAAC 58.285 47.619 1.42 0.00 44.14 2.93
1549 2976 2.040145 TCCATGAGCAGGTGATCAAACA 59.960 45.455 1.42 0.00 44.14 2.83
1550 2977 3.021695 CCATGAGCAGGTGATCAAACAT 58.978 45.455 1.42 0.00 44.14 2.71
1551 2978 3.066342 CCATGAGCAGGTGATCAAACATC 59.934 47.826 1.42 0.00 44.14 3.06
1552 2979 3.708403 TGAGCAGGTGATCAAACATCT 57.292 42.857 0.00 0.00 37.53 2.90
1554 2981 2.681848 GAGCAGGTGATCAAACATCTGG 59.318 50.000 0.00 0.00 45.71 3.86
1555 2982 2.306805 AGCAGGTGATCAAACATCTGGA 59.693 45.455 0.00 0.00 45.71 3.86
1556 2983 2.681848 GCAGGTGATCAAACATCTGGAG 59.318 50.000 0.00 0.00 45.71 3.86
1557 2984 3.276857 CAGGTGATCAAACATCTGGAGG 58.723 50.000 0.00 0.00 43.00 4.30
1558 2985 3.054875 CAGGTGATCAAACATCTGGAGGA 60.055 47.826 0.00 0.00 43.00 3.71
1559 2986 3.588842 AGGTGATCAAACATCTGGAGGAA 59.411 43.478 0.00 0.00 29.41 3.36
1560 2987 4.043310 AGGTGATCAAACATCTGGAGGAAA 59.957 41.667 0.00 0.00 29.41 3.13
1561 2988 4.952335 GGTGATCAAACATCTGGAGGAAAT 59.048 41.667 0.00 0.00 0.00 2.17
1562 2989 5.420104 GGTGATCAAACATCTGGAGGAAATT 59.580 40.000 0.00 0.00 0.00 1.82
1563 2990 6.603201 GGTGATCAAACATCTGGAGGAAATTA 59.397 38.462 0.00 0.00 0.00 1.40
1564 2991 7.122650 GGTGATCAAACATCTGGAGGAAATTAA 59.877 37.037 0.00 0.00 0.00 1.40
1565 2992 8.689972 GTGATCAAACATCTGGAGGAAATTAAT 58.310 33.333 0.00 0.00 0.00 1.40
1566 2993 8.689061 TGATCAAACATCTGGAGGAAATTAATG 58.311 33.333 0.00 0.00 0.00 1.90
1567 2994 8.599624 ATCAAACATCTGGAGGAAATTAATGT 57.400 30.769 0.00 0.00 0.00 2.71
1568 2995 9.699410 ATCAAACATCTGGAGGAAATTAATGTA 57.301 29.630 0.00 0.00 0.00 2.29
1569 2996 9.527157 TCAAACATCTGGAGGAAATTAATGTAA 57.473 29.630 0.00 0.00 0.00 2.41
1597 3024 8.161699 TGTACTTGTTCACTAAATTTCCTTCC 57.838 34.615 0.00 0.00 0.00 3.46
1598 3025 6.650427 ACTTGTTCACTAAATTTCCTTCCC 57.350 37.500 0.00 0.00 0.00 3.97
1599 3026 6.373759 ACTTGTTCACTAAATTTCCTTCCCT 58.626 36.000 0.00 0.00 0.00 4.20
1600 3027 6.490381 ACTTGTTCACTAAATTTCCTTCCCTC 59.510 38.462 0.00 0.00 0.00 4.30
1601 3028 5.321927 TGTTCACTAAATTTCCTTCCCTCC 58.678 41.667 0.00 0.00 0.00 4.30
1602 3029 4.586306 TCACTAAATTTCCTTCCCTCCC 57.414 45.455 0.00 0.00 0.00 4.30
1603 3030 3.054655 TCACTAAATTTCCTTCCCTCCCG 60.055 47.826 0.00 0.00 0.00 5.14
1604 3031 2.917600 ACTAAATTTCCTTCCCTCCCGT 59.082 45.455 0.00 0.00 0.00 5.28
1605 3032 2.509166 AAATTTCCTTCCCTCCCGTC 57.491 50.000 0.00 0.00 0.00 4.79
1606 3033 1.368374 AATTTCCTTCCCTCCCGTCA 58.632 50.000 0.00 0.00 0.00 4.35
1607 3034 1.368374 ATTTCCTTCCCTCCCGTCAA 58.632 50.000 0.00 0.00 0.00 3.18
1608 3035 0.690762 TTTCCTTCCCTCCCGTCAAG 59.309 55.000 0.00 0.00 0.00 3.02
1609 3036 0.473117 TTCCTTCCCTCCCGTCAAGT 60.473 55.000 0.00 0.00 0.00 3.16
1610 3037 0.410663 TCCTTCCCTCCCGTCAAGTA 59.589 55.000 0.00 0.00 0.00 2.24
1611 3038 1.203212 TCCTTCCCTCCCGTCAAGTAA 60.203 52.381 0.00 0.00 0.00 2.24
1612 3039 1.838077 CCTTCCCTCCCGTCAAGTAAT 59.162 52.381 0.00 0.00 0.00 1.89
1613 3040 2.238898 CCTTCCCTCCCGTCAAGTAATT 59.761 50.000 0.00 0.00 0.00 1.40
1614 3041 3.532542 CTTCCCTCCCGTCAAGTAATTC 58.467 50.000 0.00 0.00 0.00 2.17
1615 3042 1.835531 TCCCTCCCGTCAAGTAATTCC 59.164 52.381 0.00 0.00 0.00 3.01
1616 3043 1.472728 CCCTCCCGTCAAGTAATTCCG 60.473 57.143 0.00 0.00 0.00 4.30
1617 3044 1.479323 CCTCCCGTCAAGTAATTCCGA 59.521 52.381 0.00 0.00 0.00 4.55
1618 3045 2.093869 CCTCCCGTCAAGTAATTCCGAA 60.094 50.000 0.00 0.00 0.00 4.30
1619 3046 2.928116 CTCCCGTCAAGTAATTCCGAAC 59.072 50.000 0.00 0.00 0.00 3.95
1620 3047 1.657094 CCCGTCAAGTAATTCCGAACG 59.343 52.381 0.00 0.00 0.00 3.95
1621 3048 1.657094 CCGTCAAGTAATTCCGAACGG 59.343 52.381 6.94 6.94 0.00 4.44
1622 3049 2.598589 CGTCAAGTAATTCCGAACGGA 58.401 47.619 12.04 12.04 43.52 4.69
1623 3050 2.597305 CGTCAAGTAATTCCGAACGGAG 59.403 50.000 15.34 3.45 46.06 4.63
1624 3051 2.928116 GTCAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 2.59 46.06 4.30
1625 3052 2.093869 TCAAGTAATTCCGAACGGAGGG 60.094 50.000 15.34 3.18 46.06 4.30
1626 3053 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
1627 3054 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
1628 3055 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
1629 3056 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
1722 3168 2.719739 AGTGCTGATTGGATTGGACTG 58.280 47.619 0.00 0.00 30.24 3.51
1857 3303 2.095461 GCCAATGGGAAAAGACTCTCC 58.905 52.381 0.00 0.00 35.59 3.71
1935 3381 4.276460 CCTTTTCGGTTTTTGTCGTAGTG 58.724 43.478 0.00 0.00 0.00 2.74
2058 3529 2.614057 GTGTGCCCACTATAACTGATGC 59.386 50.000 0.00 0.00 38.61 3.91
2068 3539 7.417911 CCCACTATAACTGATGCTGTTCTCTTA 60.418 40.741 0.00 0.00 0.00 2.10
2111 3582 7.624360 ATTATAGCACAAATGAAAGAACCGA 57.376 32.000 0.00 0.00 0.00 4.69
2121 3594 1.661112 GAAAGAACCGAGCGGATGAAG 59.339 52.381 16.83 0.00 38.96 3.02
2129 3602 1.134367 CGAGCGGATGAAGTTAGGTGA 59.866 52.381 0.00 0.00 0.00 4.02
2134 3607 5.930135 AGCGGATGAAGTTAGGTGATTAAT 58.070 37.500 0.00 0.00 0.00 1.40
2135 3608 5.760253 AGCGGATGAAGTTAGGTGATTAATG 59.240 40.000 0.00 0.00 0.00 1.90
2136 3609 5.527582 GCGGATGAAGTTAGGTGATTAATGT 59.472 40.000 0.00 0.00 0.00 2.71
2137 3610 6.511767 GCGGATGAAGTTAGGTGATTAATGTG 60.512 42.308 0.00 0.00 0.00 3.21
2142 3615 8.771920 TGAAGTTAGGTGATTAATGTGTAGTG 57.228 34.615 0.00 0.00 0.00 2.74
2146 3625 3.202151 AGGTGATTAATGTGTAGTGGGGG 59.798 47.826 0.00 0.00 0.00 5.40
2164 3727 6.326843 AGTGGGGGACAGATAATAGTTACTTC 59.673 42.308 0.00 0.00 0.00 3.01
2241 3839 3.233507 TGGCCTGCTTTTCTGAAGAAAT 58.766 40.909 3.32 0.00 42.83 2.17
2242 3840 3.006110 TGGCCTGCTTTTCTGAAGAAATG 59.994 43.478 3.32 9.66 42.83 2.32
2250 3848 6.946229 CTTTTCTGAAGAAATGCTTGGATG 57.054 37.500 6.33 0.00 42.83 3.51
2254 3852 5.255687 TCTGAAGAAATGCTTGGATGCTTA 58.744 37.500 0.00 0.00 36.83 3.09
2256 3854 6.379133 TCTGAAGAAATGCTTGGATGCTTAAT 59.621 34.615 0.00 0.00 36.83 1.40
2257 3855 6.334989 TGAAGAAATGCTTGGATGCTTAATG 58.665 36.000 0.00 0.00 36.83 1.90
2258 3856 5.927281 AGAAATGCTTGGATGCTTAATGT 57.073 34.783 0.00 0.00 0.00 2.71
2259 3857 5.899299 AGAAATGCTTGGATGCTTAATGTC 58.101 37.500 0.00 0.00 0.00 3.06
2260 3858 5.655532 AGAAATGCTTGGATGCTTAATGTCT 59.344 36.000 0.00 0.00 0.00 3.41
2261 3859 4.913335 ATGCTTGGATGCTTAATGTCTG 57.087 40.909 0.00 0.00 0.00 3.51
2268 3866 3.181493 GGATGCTTAATGTCTGCTTGTGG 60.181 47.826 0.00 0.00 0.00 4.17
2372 3970 5.833131 AGGAAATGGCAAAAGAAGTGAAGTA 59.167 36.000 0.00 0.00 0.00 2.24
2415 4013 2.815589 GCAAAGGGCGGAGGATATTGAT 60.816 50.000 0.00 0.00 0.00 2.57
2456 4054 8.265055 AGTATTACATTTCCCCATATATCACCG 58.735 37.037 0.00 0.00 0.00 4.94
2460 4058 6.133356 ACATTTCCCCATATATCACCGTTTT 58.867 36.000 0.00 0.00 0.00 2.43
2461 4059 6.264518 ACATTTCCCCATATATCACCGTTTTC 59.735 38.462 0.00 0.00 0.00 2.29
2463 4061 5.640158 TCCCCATATATCACCGTTTTCTT 57.360 39.130 0.00 0.00 0.00 2.52
2464 4062 6.750660 TCCCCATATATCACCGTTTTCTTA 57.249 37.500 0.00 0.00 0.00 2.10
2467 4065 8.221944 TCCCCATATATCACCGTTTTCTTATTT 58.778 33.333 0.00 0.00 0.00 1.40
2468 4066 8.512138 CCCCATATATCACCGTTTTCTTATTTC 58.488 37.037 0.00 0.00 0.00 2.17
2469 4067 9.062524 CCCATATATCACCGTTTTCTTATTTCA 57.937 33.333 0.00 0.00 0.00 2.69
2470 4068 9.878599 CCATATATCACCGTTTTCTTATTTCAC 57.121 33.333 0.00 0.00 0.00 3.18
2478 4076 8.953990 CACCGTTTTCTTATTTCACTTTTACTG 58.046 33.333 0.00 0.00 0.00 2.74
2493 4095 6.636850 CACTTTTACTGCATTATTATTCCGCC 59.363 38.462 0.00 0.00 0.00 6.13
2500 4102 4.515191 TGCATTATTATTCCGCCTGACTTC 59.485 41.667 0.00 0.00 0.00 3.01
2501 4103 4.757149 GCATTATTATTCCGCCTGACTTCT 59.243 41.667 0.00 0.00 0.00 2.85
2525 4127 3.777465 TCACTCGGTACTTATGTGAGC 57.223 47.619 0.00 0.00 33.45 4.26
2536 4138 5.886960 ACTTATGTGAGCTTTCAATGGTC 57.113 39.130 0.00 0.00 0.00 4.02
2551 4153 3.484953 ATGGTCAGGTAAGGACTGGTA 57.515 47.619 0.00 0.00 36.62 3.25
2552 4154 3.484953 TGGTCAGGTAAGGACTGGTAT 57.515 47.619 0.00 0.00 36.62 2.73
2553 4155 3.104512 TGGTCAGGTAAGGACTGGTATG 58.895 50.000 0.00 0.00 36.62 2.39
2554 4156 2.158943 GGTCAGGTAAGGACTGGTATGC 60.159 54.545 0.00 0.00 36.62 3.14
2589 4191 4.991687 GGTGAAATATTGGGTTTTGCGAAA 59.008 37.500 0.00 0.00 0.00 3.46
2604 4206 7.008628 GGTTTTGCGAAATTATTCAGTGATGAG 59.991 37.037 1.61 0.00 35.15 2.90
2647 4251 8.846211 TGAGCAGGTTATTTTTATACTTATGCC 58.154 33.333 0.00 0.00 0.00 4.40
2661 4265 9.791801 TTATACTTATGCCTTTTCATCTATGCA 57.208 29.630 0.00 0.00 0.00 3.96
2673 4277 9.286946 CTTTTCATCTATGCATTTTCTCTTCAC 57.713 33.333 3.54 0.00 0.00 3.18
2798 4405 5.163854 GCGCTTTATGCTCAGAAGAAAACTA 60.164 40.000 0.00 0.00 40.11 2.24
2810 4417 8.154649 TCAGAAGAAAACTAAAATGGTGAGTC 57.845 34.615 0.00 0.00 0.00 3.36
2824 4431 8.954950 AAATGGTGAGTCTTTCTATACATCAG 57.045 34.615 0.00 0.00 0.00 2.90
2832 4439 9.979578 GAGTCTTTCTATACATCAGATCACATT 57.020 33.333 0.00 0.00 0.00 2.71
2852 4459 8.687824 CACATTTGGTGTTTATTAAAGCTAGG 57.312 34.615 0.00 0.00 42.75 3.02
2870 4480 7.049799 AGCTAGGAGAAAATAGTGCTAGAAG 57.950 40.000 0.00 0.00 36.98 2.85
2874 4484 9.303116 CTAGGAGAAAATAGTGCTAGAAGGATA 57.697 37.037 0.00 0.00 36.98 2.59
2875 4485 7.958088 AGGAGAAAATAGTGCTAGAAGGATAC 58.042 38.462 0.00 0.00 0.00 2.24
2927 4537 1.003839 TTCGTGTGTGATCCCCTGC 60.004 57.895 0.00 0.00 0.00 4.85
2960 4570 6.024552 AGTTACATTTGCAACTTGGTATGG 57.975 37.500 0.00 0.00 30.89 2.74
2971 4581 5.163519 GCAACTTGGTATGGCAGATATGTTT 60.164 40.000 0.00 0.00 0.00 2.83
2992 4602 3.599343 TCTCTTGTCATTCCAACATCCG 58.401 45.455 0.00 0.00 0.00 4.18
2996 4606 3.704800 TGTCATTCCAACATCCGGTAA 57.295 42.857 0.00 0.00 0.00 2.85
3007 4638 0.988832 ATCCGGTAAGGTTCTGGCAA 59.011 50.000 0.00 0.00 41.99 4.52
3039 4670 4.286707 TGTAGAAATAGGCCACTAGAGCA 58.713 43.478 5.01 0.00 31.54 4.26
3044 4675 3.567478 ATAGGCCACTAGAGCAAAAGG 57.433 47.619 5.01 0.00 31.54 3.11
3076 4707 4.790765 ATTTGCCTCTTTTTCTGGCTAC 57.209 40.909 0.00 0.00 46.23 3.58
3078 4709 4.634012 TTGCCTCTTTTTCTGGCTACTA 57.366 40.909 0.00 0.00 46.23 1.82
3079 4710 4.207891 TGCCTCTTTTTCTGGCTACTAG 57.792 45.455 0.00 0.00 46.23 2.57
3080 4711 2.939756 GCCTCTTTTTCTGGCTACTAGC 59.060 50.000 0.00 0.00 43.05 3.42
3135 4766 2.094442 GGTGTAGCCTCTCTCAGTGAAC 60.094 54.545 0.00 0.00 0.00 3.18
3191 4822 2.338500 CTCGGTTTGCTTCCAGTAGAC 58.662 52.381 0.00 0.00 0.00 2.59
3269 4918 7.611467 TGTCTGTAGCCAATTTCTATTCAACAT 59.389 33.333 0.00 0.00 0.00 2.71
3285 4934 4.836125 CAACATTGGTTGCTAGTTCAGT 57.164 40.909 0.00 0.00 46.98 3.41
3287 4936 4.085357 ACATTGGTTGCTAGTTCAGTGA 57.915 40.909 0.00 0.00 0.00 3.41
3289 4938 5.072741 ACATTGGTTGCTAGTTCAGTGATT 58.927 37.500 0.00 0.00 0.00 2.57
3290 4939 5.048504 ACATTGGTTGCTAGTTCAGTGATTG 60.049 40.000 0.00 0.00 0.00 2.67
3291 4940 4.350368 TGGTTGCTAGTTCAGTGATTGA 57.650 40.909 0.00 0.00 0.00 2.57
3292 4941 4.910195 TGGTTGCTAGTTCAGTGATTGAT 58.090 39.130 0.00 0.00 35.27 2.57
3294 4943 4.095483 GGTTGCTAGTTCAGTGATTGATGG 59.905 45.833 0.00 0.00 35.27 3.51
3297 4946 5.316167 TGCTAGTTCAGTGATTGATGGTTT 58.684 37.500 0.00 0.00 35.27 3.27
3298 4947 5.769662 TGCTAGTTCAGTGATTGATGGTTTT 59.230 36.000 0.00 0.00 35.27 2.43
3299 4948 6.072508 TGCTAGTTCAGTGATTGATGGTTTTC 60.073 38.462 0.00 0.00 35.27 2.29
3300 4949 6.072508 GCTAGTTCAGTGATTGATGGTTTTCA 60.073 38.462 0.00 0.00 35.27 2.69
3301 4950 6.906157 AGTTCAGTGATTGATGGTTTTCAT 57.094 33.333 0.00 0.00 39.13 2.57
3302 4951 7.294017 AGTTCAGTGATTGATGGTTTTCATT 57.706 32.000 0.00 0.00 35.97 2.57
3303 4952 7.149973 AGTTCAGTGATTGATGGTTTTCATTG 58.850 34.615 0.00 0.00 35.97 2.82
3304 4953 5.472148 TCAGTGATTGATGGTTTTCATTGC 58.528 37.500 0.00 0.00 35.97 3.56
3305 4954 5.244402 TCAGTGATTGATGGTTTTCATTGCT 59.756 36.000 0.00 0.00 35.97 3.91
3306 4955 5.929992 CAGTGATTGATGGTTTTCATTGCTT 59.070 36.000 0.00 0.00 35.97 3.91
3307 4956 5.929992 AGTGATTGATGGTTTTCATTGCTTG 59.070 36.000 0.00 0.00 35.97 4.01
3308 4957 5.927689 GTGATTGATGGTTTTCATTGCTTGA 59.072 36.000 0.00 0.00 35.97 3.02
3309 4958 6.090358 GTGATTGATGGTTTTCATTGCTTGAG 59.910 38.462 0.00 0.00 35.97 3.02
3310 4959 5.787953 TTGATGGTTTTCATTGCTTGAGA 57.212 34.783 0.00 0.00 35.97 3.27
3311 4960 5.787953 TGATGGTTTTCATTGCTTGAGAA 57.212 34.783 0.00 0.00 35.97 2.87
3312 4961 6.159299 TGATGGTTTTCATTGCTTGAGAAA 57.841 33.333 0.00 0.00 35.97 2.52
3313 4962 6.580788 TGATGGTTTTCATTGCTTGAGAAAA 58.419 32.000 0.00 0.00 38.50 2.29
3314 4963 6.702723 TGATGGTTTTCATTGCTTGAGAAAAG 59.297 34.615 0.00 0.00 40.63 2.27
3315 4964 5.334435 GGTTTTCATTGCTTGAGAAAAGC 57.666 39.130 11.59 11.59 45.95 3.51
3329 4978 9.289303 GCTTGAGAAAAGCAATATTTAATTCGA 57.711 29.630 5.23 0.00 42.56 3.71
3339 4988 8.730680 AGCAATATTTAATTCGATACATGTCCC 58.269 33.333 0.00 0.00 0.00 4.46
3340 4989 8.511321 GCAATATTTAATTCGATACATGTCCCA 58.489 33.333 0.00 0.00 0.00 4.37
3341 4990 9.825972 CAATATTTAATTCGATACATGTCCCAC 57.174 33.333 0.00 0.00 0.00 4.61
3342 4991 6.877611 ATTTAATTCGATACATGTCCCACC 57.122 37.500 0.00 0.00 0.00 4.61
3343 4992 5.623956 TTAATTCGATACATGTCCCACCT 57.376 39.130 0.00 0.00 0.00 4.00
3344 4993 3.753294 ATTCGATACATGTCCCACCTC 57.247 47.619 0.00 0.00 0.00 3.85
3345 4994 2.454336 TCGATACATGTCCCACCTCT 57.546 50.000 0.00 0.00 0.00 3.69
3346 4995 3.588210 TCGATACATGTCCCACCTCTA 57.412 47.619 0.00 0.00 0.00 2.43
3347 4996 4.114015 TCGATACATGTCCCACCTCTAT 57.886 45.455 0.00 0.00 0.00 1.98
3348 4997 4.480115 TCGATACATGTCCCACCTCTATT 58.520 43.478 0.00 0.00 0.00 1.73
3349 4998 4.899457 TCGATACATGTCCCACCTCTATTT 59.101 41.667 0.00 0.00 0.00 1.40
3350 4999 5.365605 TCGATACATGTCCCACCTCTATTTT 59.634 40.000 0.00 0.00 0.00 1.82
3351 5000 6.055588 CGATACATGTCCCACCTCTATTTTT 58.944 40.000 0.00 0.00 0.00 1.94
3377 5026 9.832445 TTTGATAAATCTGTATTACCTGAGGAC 57.168 33.333 4.99 0.00 0.00 3.85
3383 5032 7.914427 ATCTGTATTACCTGAGGACAATGTA 57.086 36.000 4.99 0.00 0.00 2.29
3440 5089 2.103153 TTGGTTGGACCTGTCTCTCT 57.897 50.000 0.00 0.00 39.58 3.10
3448 5097 3.181433 TGGACCTGTCTCTCTACTGTGAA 60.181 47.826 0.00 0.00 0.00 3.18
3475 5124 6.665680 TGCCATCTTCTCTCCTTATACTATCC 59.334 42.308 0.00 0.00 0.00 2.59
3780 5429 8.757982 AACTTATCAAGGTCATCTAATGCATT 57.242 30.769 17.56 17.56 0.00 3.56
3865 5517 2.176364 AGGCATATCAGTTCCCAATGCT 59.824 45.455 5.67 0.00 42.01 3.79
3869 5521 2.134789 ATCAGTTCCCAATGCTGGAC 57.865 50.000 0.00 0.00 46.92 4.02
3874 5526 3.379372 CAGTTCCCAATGCTGGACTAATG 59.621 47.826 0.00 0.00 46.92 1.90
3884 5536 3.142174 GCTGGACTAATGGTATTCTGGC 58.858 50.000 0.00 0.00 0.00 4.85
3887 5539 2.441750 GGACTAATGGTATTCTGGCCCA 59.558 50.000 0.00 0.00 0.00 5.36
3889 5541 3.123273 ACTAATGGTATTCTGGCCCAGT 58.877 45.455 11.27 0.00 32.61 4.00
3912 5566 3.006859 GCAAAACCTATTTGAAGTGGCCT 59.993 43.478 3.32 0.00 0.00 5.19
3918 5572 5.826643 ACCTATTTGAAGTGGCCTATTTCA 58.173 37.500 3.32 8.65 33.74 2.69
3930 5584 5.885912 GTGGCCTATTTCATACCAGAAAAGA 59.114 40.000 3.32 0.00 40.54 2.52
3941 5602 7.275183 TCATACCAGAAAAGACCATGTATGAG 58.725 38.462 0.00 0.00 38.56 2.90
3954 5615 5.132502 CCATGTATGAGCAAGGGTTGATTA 58.867 41.667 0.00 0.00 0.00 1.75
3955 5616 5.593909 CCATGTATGAGCAAGGGTTGATTAA 59.406 40.000 0.00 0.00 0.00 1.40
3967 5628 6.195600 AGGGTTGATTAAACTTCCACACTA 57.804 37.500 0.00 0.00 38.92 2.74
3972 5633 6.801539 TGATTAAACTTCCACACTAAGCTG 57.198 37.500 0.00 0.00 0.00 4.24
4021 5682 7.818997 GGGGGAGTCCTTTTATAGTTTTATG 57.181 40.000 9.58 0.00 35.33 1.90
4022 5683 7.351952 GGGGGAGTCCTTTTATAGTTTTATGT 58.648 38.462 9.58 0.00 35.33 2.29
4045 5706 4.161942 TGTCCATTTTCCATTTATGCCCAG 59.838 41.667 0.00 0.00 0.00 4.45
4047 5708 5.362430 GTCCATTTTCCATTTATGCCCAGTA 59.638 40.000 0.00 0.00 0.00 2.74
4056 5717 8.213489 TCCATTTATGCCCAGTACTATTGATA 57.787 34.615 0.00 0.00 0.00 2.15
4151 5813 4.756642 TCTTTACACATGTTGCAGGAAGAG 59.243 41.667 0.00 0.00 0.00 2.85
4161 5823 4.037923 TGTTGCAGGAAGAGGAAAATGAAC 59.962 41.667 0.00 0.00 0.00 3.18
4168 5830 4.460731 GGAAGAGGAAAATGAACAAGAGGG 59.539 45.833 0.00 0.00 0.00 4.30
4176 5838 0.251297 TGAACAAGAGGGCATGGTGG 60.251 55.000 0.00 0.00 0.00 4.61
4178 5840 0.251341 AACAAGAGGGCATGGTGGAC 60.251 55.000 0.00 0.00 0.00 4.02
4179 5841 1.379916 CAAGAGGGCATGGTGGACA 59.620 57.895 0.00 0.00 0.00 4.02
4180 5842 0.251297 CAAGAGGGCATGGTGGACAA 60.251 55.000 0.00 0.00 0.00 3.18
4184 5846 1.217057 AGGGCATGGTGGACAAGGAT 61.217 55.000 0.00 0.00 0.00 3.24
4186 5848 0.323725 GGCATGGTGGACAAGGATGT 60.324 55.000 0.00 0.00 44.25 3.06
4187 5849 0.813184 GCATGGTGGACAAGGATGTG 59.187 55.000 0.00 0.00 40.74 3.21
4189 5851 0.323725 ATGGTGGACAAGGATGTGCC 60.324 55.000 0.00 0.00 46.38 5.01
4191 5853 1.302511 GTGGACAAGGATGTGCCGT 60.303 57.895 0.00 0.00 46.38 5.68
4192 5854 0.889186 GTGGACAAGGATGTGCCGTT 60.889 55.000 0.00 0.00 46.38 4.44
4231 5902 1.538047 GAAGCTGGTGATCTGGCAAA 58.462 50.000 0.00 0.00 0.00 3.68
4315 5986 4.870426 GTCTTCTGCATCGGTAAGATTTCA 59.130 41.667 0.00 0.00 37.52 2.69
4346 6017 5.173774 ACTTGTTTGCACATGTCTGTTAG 57.826 39.130 0.00 0.00 36.77 2.34
4356 6027 7.035612 TGCACATGTCTGTTAGTAGATAGTTG 58.964 38.462 0.00 0.00 31.62 3.16
4427 6196 4.080129 AGGAGCATCAAGAATTCCTAAGCA 60.080 41.667 0.65 0.00 36.54 3.91
4655 6479 1.793258 CAGAGGATGCTAATGAGGCG 58.207 55.000 0.00 0.00 0.00 5.52
4667 6491 1.384989 ATGAGGCGTACGTAGCTGCT 61.385 55.000 17.90 7.57 34.52 4.24
4678 6502 1.609555 CGTAGCTGCTAAGGGGAGTAG 59.390 57.143 11.57 0.00 35.71 2.57
4682 6506 2.178984 AGCTGCTAAGGGGAGTAGATCT 59.821 50.000 0.00 0.00 35.71 2.75
4685 6509 2.320781 GCTAAGGGGAGTAGATCTGCA 58.679 52.381 13.64 0.00 36.18 4.41
4687 6511 3.134804 GCTAAGGGGAGTAGATCTGCAAA 59.865 47.826 13.64 0.00 36.18 3.68
4700 6524 6.414408 AGATCTGCAAAAAGTTCAGTATCG 57.586 37.500 0.00 0.00 0.00 2.92
4703 6527 5.053811 TCTGCAAAAAGTTCAGTATCGTCA 58.946 37.500 0.00 0.00 0.00 4.35
4767 6691 5.902613 TCAGATATTTTGGAAAGTGCAGG 57.097 39.130 0.00 0.00 0.00 4.85
4778 6702 2.016905 AAGTGCAGGAGGTCTGTAGT 57.983 50.000 0.00 0.00 45.08 2.73
4779 6703 2.016905 AGTGCAGGAGGTCTGTAGTT 57.983 50.000 0.00 0.00 45.08 2.24
4792 6716 7.865889 GGAGGTCTGTAGTTTTAACAAAAATGG 59.134 37.037 0.00 0.00 30.58 3.16
4809 6733 7.559170 ACAAAAATGGAATCAAACCAATTTGGA 59.441 29.630 22.19 0.00 44.61 3.53
4812 6736 4.577875 TGGAATCAAACCAATTTGGATGC 58.422 39.130 22.19 3.52 44.61 3.91
4814 6738 3.632643 ATCAAACCAATTTGGATGCCC 57.367 42.857 22.19 0.00 44.61 5.36
4821 6745 2.167075 CCAATTTGGATGCCCTGAGTTC 59.833 50.000 10.03 0.00 40.96 3.01
4822 6746 2.149973 ATTTGGATGCCCTGAGTTCC 57.850 50.000 0.00 0.00 0.00 3.62
4825 6749 2.670148 GGATGCCCTGAGTTCCGGT 61.670 63.158 0.00 0.00 0.00 5.28
4826 6750 1.153349 GATGCCCTGAGTTCCGGTC 60.153 63.158 0.00 0.00 0.00 4.79
4827 6751 2.907897 GATGCCCTGAGTTCCGGTCG 62.908 65.000 0.00 0.00 0.00 4.79
4839 6764 1.052124 TCCGGTCGCCCCATTTCTAT 61.052 55.000 0.00 0.00 0.00 1.98
4841 6766 1.071071 CCGGTCGCCCCATTTCTATTA 59.929 52.381 0.00 0.00 0.00 0.98
4889 6814 2.746362 CCAGTCTGTTTCTTCATCCTGC 59.254 50.000 0.00 0.00 0.00 4.85
4890 6815 3.558746 CCAGTCTGTTTCTTCATCCTGCT 60.559 47.826 0.00 0.00 0.00 4.24
4898 6827 5.423290 TGTTTCTTCATCCTGCTCATCTCTA 59.577 40.000 0.00 0.00 0.00 2.43
4908 6837 3.636300 CTGCTCATCTCTAGCCTGTAACT 59.364 47.826 0.00 0.00 39.30 2.24
4910 6839 4.142071 TGCTCATCTCTAGCCTGTAACTTG 60.142 45.833 0.00 0.00 39.30 3.16
4915 6844 4.669700 TCTCTAGCCTGTAACTTGTGGTA 58.330 43.478 0.00 0.00 0.00 3.25
4922 6851 4.760204 GCCTGTAACTTGTGGTATGTTCTT 59.240 41.667 0.00 0.00 0.00 2.52
4923 6852 5.334879 GCCTGTAACTTGTGGTATGTTCTTG 60.335 44.000 0.00 0.00 0.00 3.02
4924 6853 5.763204 CCTGTAACTTGTGGTATGTTCTTGT 59.237 40.000 0.00 0.00 0.00 3.16
4925 6854 6.293407 CCTGTAACTTGTGGTATGTTCTTGTG 60.293 42.308 0.00 0.00 0.00 3.33
4926 6855 6.116806 TGTAACTTGTGGTATGTTCTTGTGT 58.883 36.000 0.00 0.00 0.00 3.72
4929 6858 6.131544 ACTTGTGGTATGTTCTTGTGTTTC 57.868 37.500 0.00 0.00 0.00 2.78
4946 6875 6.680810 TGTGTTTCTTCTTGCAGATAAATGG 58.319 36.000 0.00 0.00 0.00 3.16
4974 6903 5.563671 GCTCAAGGAACTGACAAAGGAAATC 60.564 44.000 0.00 0.00 40.86 2.17
4975 6904 4.827284 TCAAGGAACTGACAAAGGAAATCC 59.173 41.667 0.00 0.00 40.86 3.01
4995 6924 2.138320 CATGATGTAGACACGGCCATC 58.862 52.381 2.24 0.00 35.40 3.51
5016 6945 1.307097 GTGATGGATGGCAGCTTCTC 58.693 55.000 1.50 0.00 0.00 2.87
5025 6954 0.179124 GGCAGCTTCTCGACAGGTAG 60.179 60.000 0.00 0.00 0.00 3.18
5026 6955 0.528470 GCAGCTTCTCGACAGGTAGT 59.472 55.000 0.00 0.00 0.00 2.73
5027 6956 1.743958 GCAGCTTCTCGACAGGTAGTA 59.256 52.381 0.00 0.00 0.00 1.82
5028 6957 2.163815 GCAGCTTCTCGACAGGTAGTAA 59.836 50.000 0.00 0.00 0.00 2.24
5029 6958 3.760537 CAGCTTCTCGACAGGTAGTAAC 58.239 50.000 0.00 0.00 0.00 2.50
5031 6961 3.690628 AGCTTCTCGACAGGTAGTAACTC 59.309 47.826 0.00 0.00 0.00 3.01
5034 6964 5.562506 TTCTCGACAGGTAGTAACTCATG 57.437 43.478 0.00 0.00 0.00 3.07
5035 6965 4.840271 TCTCGACAGGTAGTAACTCATGA 58.160 43.478 0.00 0.00 0.00 3.07
5039 6969 6.561614 TCGACAGGTAGTAACTCATGATTTC 58.438 40.000 0.97 0.00 0.00 2.17
5041 6971 6.473778 CGACAGGTAGTAACTCATGATTTCTG 59.526 42.308 0.97 5.87 0.00 3.02
5045 6975 8.251026 CAGGTAGTAACTCATGATTTCTGTGTA 58.749 37.037 0.97 0.00 0.00 2.90
5046 6976 8.470805 AGGTAGTAACTCATGATTTCTGTGTAG 58.529 37.037 0.97 0.00 0.00 2.74
5048 6978 9.291664 GTAGTAACTCATGATTTCTGTGTAGTC 57.708 37.037 0.97 0.00 0.00 2.59
5051 6981 9.856488 GTAACTCATGATTTCTGTGTAGTCTAA 57.144 33.333 0.97 0.00 0.00 2.10
5081 7011 9.570468 AGTCTATACGACATAAGTAGAATTCCA 57.430 33.333 0.65 0.00 45.32 3.53
5183 7115 1.762957 AGGGATCATGACGGTAAGGTG 59.237 52.381 0.00 0.00 0.00 4.00
5283 7215 4.447290 GAGCCTCTCCAAAGATAAAGGTC 58.553 47.826 0.00 0.00 0.00 3.85
5284 7216 3.201045 AGCCTCTCCAAAGATAAAGGTCC 59.799 47.826 0.00 0.00 0.00 4.46
5287 7219 4.969359 CCTCTCCAAAGATAAAGGTCCCTA 59.031 45.833 0.00 0.00 0.00 3.53
5289 7221 6.101881 CCTCTCCAAAGATAAAGGTCCCTAAT 59.898 42.308 0.00 0.00 0.00 1.73
5290 7222 7.366913 CCTCTCCAAAGATAAAGGTCCCTAATT 60.367 40.741 0.00 0.00 0.00 1.40
5291 7223 7.939781 TCTCCAAAGATAAAGGTCCCTAATTT 58.060 34.615 0.00 0.00 0.00 1.82
5292 7224 8.398743 TCTCCAAAGATAAAGGTCCCTAATTTT 58.601 33.333 0.00 0.00 0.00 1.82
5293 7225 9.695155 CTCCAAAGATAAAGGTCCCTAATTTTA 57.305 33.333 0.00 0.00 0.00 1.52
5322 7262 1.299468 CGCTCCTGTCGATACTGCC 60.299 63.158 0.00 0.00 0.00 4.85
5326 7266 1.336440 CTCCTGTCGATACTGCCTGAG 59.664 57.143 0.00 0.00 0.00 3.35
5346 7286 3.448686 AGCGTATTGACACATACTGCTC 58.551 45.455 13.93 0.00 32.25 4.26
5351 7291 1.269958 TGACACATACTGCTCTGCCT 58.730 50.000 0.00 0.00 0.00 4.75
5352 7292 1.205655 TGACACATACTGCTCTGCCTC 59.794 52.381 0.00 0.00 0.00 4.70
5353 7293 1.480137 GACACATACTGCTCTGCCTCT 59.520 52.381 0.00 0.00 0.00 3.69
5360 7309 2.438075 GCTCTGCCTCTGCTTGGG 60.438 66.667 0.00 0.00 38.71 4.12
5361 7310 3.076092 CTCTGCCTCTGCTTGGGT 58.924 61.111 0.00 0.00 38.71 4.51
5362 7311 1.377994 CTCTGCCTCTGCTTGGGTT 59.622 57.895 0.00 0.00 38.71 4.11
5363 7312 0.615331 CTCTGCCTCTGCTTGGGTTA 59.385 55.000 0.00 0.00 38.71 2.85
5364 7313 0.324943 TCTGCCTCTGCTTGGGTTAC 59.675 55.000 0.00 0.00 38.71 2.50
5367 7316 1.075374 TGCCTCTGCTTGGGTTACATT 59.925 47.619 0.00 0.00 38.71 2.71
5400 7349 0.608130 TCCTGGTTGAGGACATCGTG 59.392 55.000 0.00 0.00 46.96 4.35
5446 7395 0.389948 AGAGCCCAACGACGAATGAC 60.390 55.000 0.00 0.00 0.00 3.06
5457 7406 1.437573 CGAATGACGGCAGCCTCTA 59.562 57.895 10.54 0.00 38.46 2.43
5458 7407 0.032678 CGAATGACGGCAGCCTCTAT 59.967 55.000 10.54 0.00 38.46 1.98
5459 7408 1.789506 GAATGACGGCAGCCTCTATC 58.210 55.000 10.54 2.40 0.00 2.08
5461 7410 2.294449 ATGACGGCAGCCTCTATCTA 57.706 50.000 10.54 0.00 0.00 1.98
5466 7415 1.337118 GGCAGCCTCTATCTAGCACT 58.663 55.000 3.29 0.00 0.00 4.40
5483 7432 7.421599 TCTAGCACTAAGAATCAAGAGAATCG 58.578 38.462 0.00 0.00 42.67 3.34
5564 7532 1.045407 AGACACGTGAAAGCCCTGTA 58.955 50.000 25.01 0.00 0.00 2.74
5573 7541 0.037734 AAAGCCCTGTAAACCCTCCG 59.962 55.000 0.00 0.00 0.00 4.63
5620 7633 1.269621 GCCTCGGCGTCTGTACATAAT 60.270 52.381 6.85 0.00 0.00 1.28
5640 7653 4.664677 GCCCGTCACTGTCGCTGT 62.665 66.667 0.00 0.00 0.00 4.40
5663 7689 2.124612 TCATGGGTGATGGCAGCG 60.125 61.111 0.00 0.00 43.31 5.18
5823 7850 1.735571 GCGCGGAAGATACAAAAGGAA 59.264 47.619 8.83 0.00 0.00 3.36
5829 7856 5.064325 GCGGAAGATACAAAAGGAAACGTAT 59.936 40.000 0.00 0.00 0.00 3.06
5872 7925 4.082245 ACAAATGGTAAAGCCCAGAATTCG 60.082 41.667 0.00 0.00 38.07 3.34
5876 7929 2.678336 GGTAAAGCCCAGAATTCGAGTG 59.322 50.000 0.00 0.00 0.00 3.51
5906 7964 0.250467 TTTCTTCTTCCGCTGCTGCT 60.250 50.000 14.03 0.00 36.97 4.24
5948 8006 1.872952 TGCATCGTTTTGACTGACTGG 59.127 47.619 0.00 0.00 0.00 4.00
6090 8175 1.260561 CTTGGACAAACAAGTCGGTCG 59.739 52.381 0.00 0.00 42.18 4.79
6142 8258 3.334054 GCCCACCTTCCAGGCTCT 61.334 66.667 0.00 0.00 43.62 4.09
6143 8259 2.911926 GCCCACCTTCCAGGCTCTT 61.912 63.158 0.00 0.00 43.62 2.85
6144 8260 1.301293 CCCACCTTCCAGGCTCTTC 59.699 63.158 0.00 0.00 39.63 2.87
6145 8261 1.301293 CCACCTTCCAGGCTCTTCC 59.699 63.158 0.00 0.00 39.63 3.46
6146 8262 1.492133 CCACCTTCCAGGCTCTTCCA 61.492 60.000 0.00 0.00 39.63 3.53
6147 8263 0.035630 CACCTTCCAGGCTCTTCCAG 60.036 60.000 0.00 0.00 39.63 3.86
6148 8264 0.474660 ACCTTCCAGGCTCTTCCAGT 60.475 55.000 0.00 0.00 39.63 4.00
6161 8277 2.158813 TCTTCCAGTTCTGCTTTTCCGT 60.159 45.455 0.00 0.00 0.00 4.69
6175 8291 4.015406 CCGTAGGCAGTGGGCACA 62.015 66.667 0.00 0.00 46.14 4.57
6184 8303 1.825090 CAGTGGGCACATACACACAT 58.175 50.000 0.00 0.00 39.99 3.21
6232 8351 0.861837 CAGTGAGAAAGTGTGCGTCC 59.138 55.000 0.00 0.00 0.00 4.79
6319 8438 3.458189 CCTTTCCACGTGAGGACATATC 58.542 50.000 19.30 0.00 37.42 1.63
6342 8463 1.438562 GAGTCGGCTCCGTCCTACTC 61.439 65.000 5.50 9.68 40.31 2.59
6343 8464 2.124403 TCGGCTCCGTCCTACTCC 60.124 66.667 8.28 0.00 40.74 3.85
6357 8478 2.392662 CTACTCCTTGCCCTCTCATCA 58.607 52.381 0.00 0.00 0.00 3.07
6358 8479 1.202330 ACTCCTTGCCCTCTCATCAG 58.798 55.000 0.00 0.00 0.00 2.90
6359 8480 1.202330 CTCCTTGCCCTCTCATCAGT 58.798 55.000 0.00 0.00 0.00 3.41
6360 8481 1.138661 CTCCTTGCCCTCTCATCAGTC 59.861 57.143 0.00 0.00 0.00 3.51
6361 8482 0.907486 CCTTGCCCTCTCATCAGTCA 59.093 55.000 0.00 0.00 0.00 3.41
6362 8483 1.489649 CCTTGCCCTCTCATCAGTCAT 59.510 52.381 0.00 0.00 0.00 3.06
6363 8484 2.485124 CCTTGCCCTCTCATCAGTCATC 60.485 54.545 0.00 0.00 0.00 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.162320 TGAGATGGATCCCAAGTGTAAGTC 59.838 45.833 9.90 0.00 36.95 3.01
20 21 4.104086 TGAGATGGATCCCAAGTGTAAGT 58.896 43.478 9.90 0.00 36.95 2.24
21 22 4.163078 ACTGAGATGGATCCCAAGTGTAAG 59.837 45.833 9.90 0.00 36.95 2.34
22 23 4.104086 ACTGAGATGGATCCCAAGTGTAA 58.896 43.478 9.90 0.00 36.95 2.41
27 28 2.295885 GCAACTGAGATGGATCCCAAG 58.704 52.381 9.90 2.11 36.95 3.61
43 44 3.265791 CCTTCACTGGACTCTATGCAAC 58.734 50.000 0.00 0.00 0.00 4.17
120 121 7.440523 AGAGAAACTGATAACTTCGCAAATT 57.559 32.000 0.00 0.00 0.00 1.82
152 153 2.970324 GCGCAAGTGGAACCGACA 60.970 61.111 0.30 0.00 37.80 4.35
288 1615 2.835156 GAGTTGCTAGGTCTTCTTCCCT 59.165 50.000 0.00 0.00 34.74 4.20
294 1621 2.329379 CACGTGAGTTGCTAGGTCTTC 58.671 52.381 10.90 0.00 46.40 2.87
319 1646 2.660064 GCGGCTTGAGGAGGAGGAA 61.660 63.158 0.00 0.00 0.00 3.36
321 1648 3.080121 AGCGGCTTGAGGAGGAGG 61.080 66.667 0.00 0.00 0.00 4.30
322 1649 2.498726 GAGCGGCTTGAGGAGGAG 59.501 66.667 2.97 0.00 0.00 3.69
456 1796 3.181492 TGCACTCAAAAGTTCAAATGCGA 60.181 39.130 0.00 0.00 31.71 5.10
561 1957 2.030262 CTCTAGCTGCATCGGGCC 59.970 66.667 1.02 0.00 43.89 5.80
564 1960 2.483877 CTCTACTCTCTAGCTGCATCGG 59.516 54.545 1.02 0.00 0.00 4.18
574 1970 1.206610 ACACGCGGTCTCTACTCTCTA 59.793 52.381 12.47 0.00 0.00 2.43
575 1971 0.036199 ACACGCGGTCTCTACTCTCT 60.036 55.000 12.47 0.00 0.00 3.10
576 1972 0.097325 CACACGCGGTCTCTACTCTC 59.903 60.000 12.47 0.00 0.00 3.20
577 1973 1.924320 GCACACGCGGTCTCTACTCT 61.924 60.000 12.47 0.00 0.00 3.24
578 1974 1.514443 GCACACGCGGTCTCTACTC 60.514 63.158 12.47 0.00 0.00 2.59
579 1975 1.924320 GAGCACACGCGGTCTCTACT 61.924 60.000 12.47 0.00 45.49 2.57
580 1976 1.514443 GAGCACACGCGGTCTCTAC 60.514 63.158 12.47 0.00 45.49 2.59
703 2105 8.729756 CAATGAGTTTGACACATGTTAGGAATA 58.270 33.333 0.00 0.00 37.53 1.75
715 2117 6.672147 AGCAGAAATACAATGAGTTTGACAC 58.328 36.000 0.00 0.00 38.76 3.67
725 2130 4.940046 ACAGTGAGGAGCAGAAATACAATG 59.060 41.667 0.00 0.00 0.00 2.82
740 2145 0.319040 CCACGTGACTGACAGTGAGG 60.319 60.000 19.30 13.11 36.79 3.86
744 2149 1.480954 AGAAACCACGTGACTGACAGT 59.519 47.619 19.30 8.12 0.00 3.55
755 2160 0.319405 ACCCGGAGTTAGAAACCACG 59.681 55.000 0.73 0.00 0.00 4.94
768 2173 5.502089 TTTCAGATAAAAGGTAACCCGGA 57.498 39.130 0.73 0.00 35.12 5.14
800 2205 3.600388 CCCTCAGGTATGTGAGTGTTTC 58.400 50.000 0.00 0.00 42.22 2.78
898 2308 3.407698 ACAGTATTCCACGCATGAAACA 58.592 40.909 0.00 0.00 0.00 2.83
899 2309 4.419522 AACAGTATTCCACGCATGAAAC 57.580 40.909 0.00 0.00 0.00 2.78
903 2313 4.149922 CGGTATAACAGTATTCCACGCATG 59.850 45.833 0.00 0.00 29.64 4.06
925 2335 8.900511 AATTTCAGACATTAATGTTCACATCG 57.099 30.769 21.63 6.52 41.95 3.84
950 2376 6.000219 AGCAGAGCAAGATAAAACTTCAGAA 59.000 36.000 0.00 0.00 0.00 3.02
972 2399 3.414700 CGGTCGACCAACTGCAGC 61.415 66.667 32.80 4.00 35.14 5.25
987 2414 0.394352 AGCCCATTTTGCTAGACCGG 60.394 55.000 0.00 0.00 37.28 5.28
990 2417 4.488879 CTTTTGAGCCCATTTTGCTAGAC 58.511 43.478 0.00 0.00 39.69 2.59
1018 2445 7.710907 CCATATGATACAGTTTCTTCCTCGAAA 59.289 37.037 3.65 0.00 0.00 3.46
1087 2514 9.985730 CATGCCATTATTACCAAGAATGTTAAT 57.014 29.630 5.75 0.00 38.17 1.40
1120 2547 2.434336 CCGACTTCCCTGAATGGACATA 59.566 50.000 0.00 0.00 38.35 2.29
1153 2580 9.362151 CAATCCAGCCCCTTTATTAGTTTTATA 57.638 33.333 0.00 0.00 0.00 0.98
1154 2581 7.290014 CCAATCCAGCCCCTTTATTAGTTTTAT 59.710 37.037 0.00 0.00 0.00 1.40
1155 2582 6.609616 CCAATCCAGCCCCTTTATTAGTTTTA 59.390 38.462 0.00 0.00 0.00 1.52
1156 2583 5.425217 CCAATCCAGCCCCTTTATTAGTTTT 59.575 40.000 0.00 0.00 0.00 2.43
1211 2638 4.039973 TCCTCGAACCACTGTCAACTAAAT 59.960 41.667 0.00 0.00 0.00 1.40
1222 2649 1.348036 CCTTCCTTTCCTCGAACCACT 59.652 52.381 0.00 0.00 0.00 4.00
1230 2657 1.339151 ACATCGTGCCTTCCTTTCCTC 60.339 52.381 0.00 0.00 0.00 3.71
1248 2675 7.466725 GCACTAGATCGCAATGGTAAAATAACA 60.467 37.037 0.00 0.00 0.00 2.41
1260 2687 3.657634 CCACATAGCACTAGATCGCAAT 58.342 45.455 0.00 0.00 0.00 3.56
1365 2792 1.221414 ACACGTCTTTCTCTTGCTGC 58.779 50.000 0.00 0.00 0.00 5.25
1412 2839 2.159517 GCTTTGGCAGGACGTATTTCTG 60.160 50.000 0.00 0.00 38.54 3.02
1417 2844 0.037590 TTGGCTTTGGCAGGACGTAT 59.962 50.000 0.00 0.00 39.75 3.06
1420 2847 1.007387 GTTTGGCTTTGGCAGGACG 60.007 57.895 0.00 0.00 39.75 4.79
1442 2869 2.605366 GACTGTTCCGCATTCTTAGCTC 59.395 50.000 0.00 0.00 0.00 4.09
1506 2933 2.649331 CTGCTCTTTTCATTGCAGGG 57.351 50.000 5.98 0.00 46.24 4.45
1524 2951 0.917533 ATCACCTGCTCATGGAAGCT 59.082 50.000 7.80 0.00 42.94 3.74
1539 2966 6.521151 AATTTCCTCCAGATGTTTGATCAC 57.479 37.500 0.00 0.00 0.00 3.06
1540 2967 8.689061 CATTAATTTCCTCCAGATGTTTGATCA 58.311 33.333 0.00 0.00 0.00 2.92
1541 2968 8.689972 ACATTAATTTCCTCCAGATGTTTGATC 58.310 33.333 0.00 0.00 0.00 2.92
1542 2969 8.599624 ACATTAATTTCCTCCAGATGTTTGAT 57.400 30.769 0.00 0.00 0.00 2.57
1543 2970 9.527157 TTACATTAATTTCCTCCAGATGTTTGA 57.473 29.630 0.00 0.00 0.00 2.69
1571 2998 8.793592 GGAAGGAAATTTAGTGAACAAGTACAT 58.206 33.333 0.00 0.00 0.00 2.29
1572 2999 7.229907 GGGAAGGAAATTTAGTGAACAAGTACA 59.770 37.037 0.00 0.00 0.00 2.90
1573 3000 7.447545 AGGGAAGGAAATTTAGTGAACAAGTAC 59.552 37.037 0.00 0.00 0.00 2.73
1574 3001 7.523415 AGGGAAGGAAATTTAGTGAACAAGTA 58.477 34.615 0.00 0.00 0.00 2.24
1575 3002 6.373759 AGGGAAGGAAATTTAGTGAACAAGT 58.626 36.000 0.00 0.00 0.00 3.16
1576 3003 6.071896 GGAGGGAAGGAAATTTAGTGAACAAG 60.072 42.308 0.00 0.00 0.00 3.16
1577 3004 5.773176 GGAGGGAAGGAAATTTAGTGAACAA 59.227 40.000 0.00 0.00 0.00 2.83
1578 3005 5.321927 GGAGGGAAGGAAATTTAGTGAACA 58.678 41.667 0.00 0.00 0.00 3.18
1579 3006 4.705507 GGGAGGGAAGGAAATTTAGTGAAC 59.294 45.833 0.00 0.00 0.00 3.18
1580 3007 4.566907 CGGGAGGGAAGGAAATTTAGTGAA 60.567 45.833 0.00 0.00 0.00 3.18
1581 3008 3.054655 CGGGAGGGAAGGAAATTTAGTGA 60.055 47.826 0.00 0.00 0.00 3.41
1582 3009 3.279434 CGGGAGGGAAGGAAATTTAGTG 58.721 50.000 0.00 0.00 0.00 2.74
1583 3010 2.917600 ACGGGAGGGAAGGAAATTTAGT 59.082 45.455 0.00 0.00 0.00 2.24
1584 3011 3.054655 TGACGGGAGGGAAGGAAATTTAG 60.055 47.826 0.00 0.00 0.00 1.85
1585 3012 2.914278 TGACGGGAGGGAAGGAAATTTA 59.086 45.455 0.00 0.00 0.00 1.40
1586 3013 1.708551 TGACGGGAGGGAAGGAAATTT 59.291 47.619 0.00 0.00 0.00 1.82
1587 3014 1.368374 TGACGGGAGGGAAGGAAATT 58.632 50.000 0.00 0.00 0.00 1.82
1588 3015 1.282157 CTTGACGGGAGGGAAGGAAAT 59.718 52.381 0.00 0.00 0.00 2.17
1589 3016 0.690762 CTTGACGGGAGGGAAGGAAA 59.309 55.000 0.00 0.00 0.00 3.13
1590 3017 0.473117 ACTTGACGGGAGGGAAGGAA 60.473 55.000 0.00 0.00 0.00 3.36
1591 3018 0.410663 TACTTGACGGGAGGGAAGGA 59.589 55.000 0.00 0.00 0.00 3.36
1592 3019 1.272807 TTACTTGACGGGAGGGAAGG 58.727 55.000 0.00 0.00 0.00 3.46
1593 3020 3.532542 GAATTACTTGACGGGAGGGAAG 58.467 50.000 0.00 0.00 0.00 3.46
1594 3021 2.237893 GGAATTACTTGACGGGAGGGAA 59.762 50.000 0.00 0.00 0.00 3.97
1595 3022 1.835531 GGAATTACTTGACGGGAGGGA 59.164 52.381 0.00 0.00 0.00 4.20
1596 3023 1.472728 CGGAATTACTTGACGGGAGGG 60.473 57.143 0.00 0.00 0.00 4.30
1597 3024 1.479323 TCGGAATTACTTGACGGGAGG 59.521 52.381 0.00 0.00 0.00 4.30
1598 3025 2.928116 GTTCGGAATTACTTGACGGGAG 59.072 50.000 0.00 0.00 0.00 4.30
1599 3026 2.671914 CGTTCGGAATTACTTGACGGGA 60.672 50.000 0.00 0.00 0.00 5.14
1600 3027 1.657094 CGTTCGGAATTACTTGACGGG 59.343 52.381 0.00 0.00 0.00 5.28
1601 3028 1.657094 CCGTTCGGAATTACTTGACGG 59.343 52.381 5.19 10.63 0.00 4.79
1602 3029 2.597305 CTCCGTTCGGAATTACTTGACG 59.403 50.000 14.79 1.68 33.41 4.35
1603 3030 2.928116 CCTCCGTTCGGAATTACTTGAC 59.072 50.000 14.79 0.00 33.41 3.18
1604 3031 2.093869 CCCTCCGTTCGGAATTACTTGA 60.094 50.000 14.79 0.00 33.41 3.02
1605 3032 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
1606 3033 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
1607 3034 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
1608 3035 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
1609 3036 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
1610 3037 1.755380 CTACTCCCTCCGTTCGGAATT 59.245 52.381 14.79 0.00 33.41 2.17
1611 3038 1.341778 ACTACTCCCTCCGTTCGGAAT 60.342 52.381 14.79 2.09 33.41 3.01
1612 3039 0.038744 ACTACTCCCTCCGTTCGGAA 59.961 55.000 14.79 0.04 33.41 4.30
1613 3040 0.038744 AACTACTCCCTCCGTTCGGA 59.961 55.000 13.34 13.34 0.00 4.55
1614 3041 0.172803 CAACTACTCCCTCCGTTCGG 59.827 60.000 4.74 4.74 0.00 4.30
1615 3042 1.171308 TCAACTACTCCCTCCGTTCG 58.829 55.000 0.00 0.00 0.00 3.95
1616 3043 4.796618 GCATATCAACTACTCCCTCCGTTC 60.797 50.000 0.00 0.00 0.00 3.95
1617 3044 3.069729 GCATATCAACTACTCCCTCCGTT 59.930 47.826 0.00 0.00 0.00 4.44
1618 3045 2.628657 GCATATCAACTACTCCCTCCGT 59.371 50.000 0.00 0.00 0.00 4.69
1619 3046 2.351835 CGCATATCAACTACTCCCTCCG 60.352 54.545 0.00 0.00 0.00 4.63
1620 3047 2.610727 GCGCATATCAACTACTCCCTCC 60.611 54.545 0.30 0.00 0.00 4.30
1621 3048 2.297597 AGCGCATATCAACTACTCCCTC 59.702 50.000 11.47 0.00 0.00 4.30
1622 3049 2.036475 CAGCGCATATCAACTACTCCCT 59.964 50.000 11.47 0.00 0.00 4.20
1623 3050 2.035961 TCAGCGCATATCAACTACTCCC 59.964 50.000 11.47 0.00 0.00 4.30
1624 3051 3.371102 TCAGCGCATATCAACTACTCC 57.629 47.619 11.47 0.00 0.00 3.85
1625 3052 4.984785 TGAATCAGCGCATATCAACTACTC 59.015 41.667 11.47 0.00 0.00 2.59
1626 3053 4.948847 TGAATCAGCGCATATCAACTACT 58.051 39.130 11.47 0.00 0.00 2.57
1627 3054 5.261370 CTGAATCAGCGCATATCAACTAC 57.739 43.478 11.47 0.00 0.00 2.73
1722 3168 6.851330 CGTCCTTCTTGTGACTGAAATTAAAC 59.149 38.462 0.00 0.00 0.00 2.01
1782 3228 0.742281 CTAGCCACAGCAGTCGCAAT 60.742 55.000 1.18 0.00 43.56 3.56
1857 3303 1.970352 GCTGGCCCCTCTCTCTTCTG 61.970 65.000 0.00 0.00 0.00 3.02
1935 3381 7.989226 AGGCAACAAAAGTTCCATGAATGGC 62.989 44.000 4.33 0.00 43.98 4.40
2058 3529 7.040494 TGCTCTCAGAATTCATAAGAGAACAG 58.960 38.462 24.50 13.60 36.42 3.16
2068 3539 9.434420 GCTATAATAGTTGCTCTCAGAATTCAT 57.566 33.333 8.44 0.00 0.00 2.57
2090 3561 4.142600 GCTCGGTTCTTTCATTTGTGCTAT 60.143 41.667 0.00 0.00 0.00 2.97
2111 3582 3.914426 AATCACCTAACTTCATCCGCT 57.086 42.857 0.00 0.00 0.00 5.52
2121 3594 5.820947 CCCCACTACACATTAATCACCTAAC 59.179 44.000 0.00 0.00 0.00 2.34
2129 3602 4.108570 TCTGTCCCCCACTACACATTAAT 58.891 43.478 0.00 0.00 0.00 1.40
2134 3607 2.932184 TATCTGTCCCCCACTACACA 57.068 50.000 0.00 0.00 0.00 3.72
2135 3608 4.900054 ACTATTATCTGTCCCCCACTACAC 59.100 45.833 0.00 0.00 0.00 2.90
2136 3609 5.152306 ACTATTATCTGTCCCCCACTACA 57.848 43.478 0.00 0.00 0.00 2.74
2137 3610 6.781507 AGTAACTATTATCTGTCCCCCACTAC 59.218 42.308 0.00 0.00 0.00 2.73
2142 3615 5.605488 TGGAAGTAACTATTATCTGTCCCCC 59.395 44.000 0.00 0.00 0.00 5.40
2174 3750 9.807649 GCATGACATAAATAGGATTTGTCTTTT 57.192 29.630 0.00 0.00 38.00 2.27
2175 3751 9.193806 AGCATGACATAAATAGGATTTGTCTTT 57.806 29.630 0.00 0.00 38.00 2.52
2210 3802 4.588528 AGAAAAGCAGGCCATTAACTGAAA 59.411 37.500 5.01 0.00 36.86 2.69
2213 3805 3.507233 TCAGAAAAGCAGGCCATTAACTG 59.493 43.478 5.01 9.79 37.76 3.16
2214 3806 3.766545 TCAGAAAAGCAGGCCATTAACT 58.233 40.909 5.01 0.00 0.00 2.24
2215 3807 4.218417 TCTTCAGAAAAGCAGGCCATTAAC 59.782 41.667 5.01 0.00 0.00 2.01
2216 3808 4.406456 TCTTCAGAAAAGCAGGCCATTAA 58.594 39.130 5.01 0.00 0.00 1.40
2241 3839 2.424601 GCAGACATTAAGCATCCAAGCA 59.575 45.455 0.00 0.00 36.85 3.91
2242 3840 2.686915 AGCAGACATTAAGCATCCAAGC 59.313 45.455 0.00 0.00 0.00 4.01
2244 3842 4.081406 ACAAGCAGACATTAAGCATCCAA 58.919 39.130 0.00 0.00 0.00 3.53
2245 3843 3.441222 CACAAGCAGACATTAAGCATCCA 59.559 43.478 0.00 0.00 0.00 3.41
2246 3844 3.181493 CCACAAGCAGACATTAAGCATCC 60.181 47.826 0.00 0.00 0.00 3.51
2250 3848 2.268730 GCCACAAGCAGACATTAAGC 57.731 50.000 0.00 0.00 42.97 3.09
2268 3866 1.972872 CCTCCTACCATTGGTCATGC 58.027 55.000 12.68 0.00 37.09 4.06
2372 3970 5.593095 TGCTTAATCTCTCCACTACGTGTAT 59.407 40.000 0.00 0.00 0.00 2.29
2390 3988 0.623723 ATCCTCCGCCCTTTGCTTAA 59.376 50.000 0.00 0.00 38.05 1.85
2403 4001 9.784531 TTCTTAATGAACTGATCAATATCCTCC 57.215 33.333 0.00 0.00 42.54 4.30
2437 4035 6.490040 AGAAAACGGTGATATATGGGGAAATG 59.510 38.462 0.00 0.00 0.00 2.32
2439 4037 6.008696 AGAAAACGGTGATATATGGGGAAA 57.991 37.500 0.00 0.00 0.00 3.13
2450 4048 9.673454 GTAAAAGTGAAATAAGAAAACGGTGAT 57.327 29.630 0.00 0.00 0.00 3.06
2467 4065 7.414436 GCGGAATAATAATGCAGTAAAAGTGA 58.586 34.615 0.00 0.00 0.00 3.41
2468 4066 6.636850 GGCGGAATAATAATGCAGTAAAAGTG 59.363 38.462 0.00 0.00 0.00 3.16
2469 4067 6.546034 AGGCGGAATAATAATGCAGTAAAAGT 59.454 34.615 0.00 0.00 0.00 2.66
2470 4068 6.857964 CAGGCGGAATAATAATGCAGTAAAAG 59.142 38.462 0.00 0.00 0.00 2.27
2478 4076 4.757149 AGAAGTCAGGCGGAATAATAATGC 59.243 41.667 0.00 0.00 0.00 3.56
2490 4092 0.534412 AGTGATCCAGAAGTCAGGCG 59.466 55.000 0.00 0.00 0.00 5.52
2493 4095 1.821753 ACCGAGTGATCCAGAAGTCAG 59.178 52.381 0.00 0.00 0.00 3.51
2500 4102 4.338400 TCACATAAGTACCGAGTGATCCAG 59.662 45.833 4.52 0.00 34.59 3.86
2501 4103 4.274978 TCACATAAGTACCGAGTGATCCA 58.725 43.478 4.52 0.00 34.59 3.41
2525 4127 4.697352 CAGTCCTTACCTGACCATTGAAAG 59.303 45.833 0.00 0.00 33.09 2.62
2536 4138 3.118261 ACATGCATACCAGTCCTTACCTG 60.118 47.826 0.00 0.00 0.00 4.00
2551 4153 9.483916 CAATATTTCACCATTATCAACATGCAT 57.516 29.630 0.00 0.00 0.00 3.96
2552 4154 7.927092 CCAATATTTCACCATTATCAACATGCA 59.073 33.333 0.00 0.00 0.00 3.96
2553 4155 7.385752 CCCAATATTTCACCATTATCAACATGC 59.614 37.037 0.00 0.00 0.00 4.06
2554 4156 8.423349 ACCCAATATTTCACCATTATCAACATG 58.577 33.333 0.00 0.00 0.00 3.21
2589 4191 6.769822 CCAAGGTTAGCTCATCACTGAATAAT 59.230 38.462 0.00 0.00 0.00 1.28
2604 4206 5.645497 CCTGCTCATATTATCCAAGGTTAGC 59.355 44.000 0.00 0.00 0.00 3.09
2637 4241 8.874744 ATGCATAGATGAAAAGGCATAAGTAT 57.125 30.769 0.00 0.00 39.92 2.12
2647 4251 9.286946 GTGAAGAGAAAATGCATAGATGAAAAG 57.713 33.333 0.00 0.00 0.00 2.27
2707 4314 5.353123 CACATATTTACTAAACGTGGCCTGT 59.647 40.000 3.32 0.00 0.00 4.00
2798 4405 9.388506 CTGATGTATAGAAAGACTCACCATTTT 57.611 33.333 0.00 0.00 0.00 1.82
2810 4417 9.334947 ACCAAATGTGATCTGATGTATAGAAAG 57.665 33.333 0.00 0.00 0.00 2.62
2832 4439 8.927675 TTTCTCCTAGCTTTAATAAACACCAA 57.072 30.769 0.00 0.00 0.00 3.67
2845 4452 7.418483 CCTTCTAGCACTATTTTCTCCTAGCTT 60.418 40.741 0.00 0.00 32.70 3.74
2847 4454 6.041069 TCCTTCTAGCACTATTTTCTCCTAGC 59.959 42.308 0.00 0.00 0.00 3.42
2852 4459 7.383843 GCAGTATCCTTCTAGCACTATTTTCTC 59.616 40.741 0.00 0.00 0.00 2.87
2870 4480 3.691118 TGATTTGCAGTTCTGCAGTATCC 59.309 43.478 28.03 18.64 46.21 2.59
2874 4484 2.954318 ACTTGATTTGCAGTTCTGCAGT 59.046 40.909 23.29 17.42 46.21 4.40
2875 4485 3.252701 AGACTTGATTTGCAGTTCTGCAG 59.747 43.478 23.29 7.63 46.21 4.41
2876 4486 3.004002 CAGACTTGATTTGCAGTTCTGCA 59.996 43.478 21.30 21.30 43.81 4.41
2878 4488 4.825546 ACAGACTTGATTTGCAGTTCTG 57.174 40.909 0.00 0.00 40.45 3.02
2883 4493 4.931601 TGCTACTACAGACTTGATTTGCAG 59.068 41.667 0.00 0.00 0.00 4.41
2888 4498 5.807520 CGAACATGCTACTACAGACTTGATT 59.192 40.000 0.00 0.00 0.00 2.57
2896 4506 3.364920 CACACACGAACATGCTACTACAG 59.635 47.826 0.00 0.00 0.00 2.74
2960 4570 6.317140 TGGAATGACAAGAGAAACATATCTGC 59.683 38.462 0.00 0.00 0.00 4.26
2971 4581 3.599343 CGGATGTTGGAATGACAAGAGA 58.401 45.455 0.00 0.00 0.00 3.10
2992 4602 6.715347 ATTTATGATTGCCAGAACCTTACC 57.285 37.500 0.00 0.00 0.00 2.85
2996 4606 6.610075 ACAAATTTATGATTGCCAGAACCT 57.390 33.333 0.00 0.00 0.00 3.50
3007 4638 9.646522 AGTGGCCTATTTCTACAAATTTATGAT 57.353 29.630 3.32 0.00 33.95 2.45
3026 4657 1.068121 ACCTTTTGCTCTAGTGGCCT 58.932 50.000 3.32 0.00 0.00 5.19
3039 4670 6.267699 AGAGGCAAATTAGCAACTTACCTTTT 59.732 34.615 0.00 0.00 35.83 2.27
3044 4675 7.867909 AGAAAAAGAGGCAAATTAGCAACTTAC 59.132 33.333 0.00 0.00 33.53 2.34
3173 4804 1.068474 CGTCTACTGGAAGCAAACCG 58.932 55.000 0.00 0.00 37.60 4.44
3191 4822 0.171231 TCACCTCTTCACGCATCTCG 59.829 55.000 0.00 0.00 45.38 4.04
3238 4869 9.937175 GAATAGAAATTGGCTACAGACATTTAC 57.063 33.333 0.00 0.00 30.06 2.01
3239 4870 9.679661 TGAATAGAAATTGGCTACAGACATTTA 57.320 29.630 0.00 0.00 30.06 1.40
3240 4871 8.579850 TGAATAGAAATTGGCTACAGACATTT 57.420 30.769 0.00 0.00 30.06 2.32
3245 4894 8.461222 CAATGTTGAATAGAAATTGGCTACAGA 58.539 33.333 0.00 0.00 0.00 3.41
3269 4918 4.713553 TCAATCACTGAACTAGCAACCAA 58.286 39.130 0.00 0.00 0.00 3.67
3281 4930 5.244402 AGCAATGAAAACCATCAATCACTGA 59.756 36.000 0.00 0.00 38.81 3.41
3282 4931 5.475719 AGCAATGAAAACCATCAATCACTG 58.524 37.500 0.00 0.00 33.53 3.66
3284 4933 5.927689 TCAAGCAATGAAAACCATCAATCAC 59.072 36.000 0.00 0.00 34.30 3.06
3285 4934 6.015265 TCTCAAGCAATGAAAACCATCAATCA 60.015 34.615 0.00 0.00 37.67 2.57
3287 4936 6.349243 TCTCAAGCAATGAAAACCATCAAT 57.651 33.333 0.00 0.00 37.67 2.57
3289 4938 5.787953 TTCTCAAGCAATGAAAACCATCA 57.212 34.783 0.00 0.00 37.67 3.07
3290 4939 6.347160 GCTTTTCTCAAGCAATGAAAACCATC 60.347 38.462 1.63 0.00 42.56 3.51
3291 4940 5.467735 GCTTTTCTCAAGCAATGAAAACCAT 59.532 36.000 1.63 0.00 42.56 3.55
3292 4941 4.810491 GCTTTTCTCAAGCAATGAAAACCA 59.190 37.500 1.63 0.00 42.56 3.67
3303 4952 9.289303 TCGAATTAAATATTGCTTTTCTCAAGC 57.711 29.630 0.00 0.00 43.29 4.01
3313 4962 8.730680 GGGACATGTATCGAATTAAATATTGCT 58.269 33.333 0.00 0.00 0.00 3.91
3314 4963 8.511321 TGGGACATGTATCGAATTAAATATTGC 58.489 33.333 0.00 0.00 0.00 3.56
3315 4964 9.825972 GTGGGACATGTATCGAATTAAATATTG 57.174 33.333 0.00 0.00 44.52 1.90
3316 4965 9.010029 GGTGGGACATGTATCGAATTAAATATT 57.990 33.333 0.00 0.00 44.52 1.28
3317 4966 8.383175 AGGTGGGACATGTATCGAATTAAATAT 58.617 33.333 0.00 0.00 44.52 1.28
3318 4967 7.741785 AGGTGGGACATGTATCGAATTAAATA 58.258 34.615 0.00 0.00 44.52 1.40
3319 4968 6.601332 AGGTGGGACATGTATCGAATTAAAT 58.399 36.000 0.00 0.00 44.52 1.40
3320 4969 5.996644 AGGTGGGACATGTATCGAATTAAA 58.003 37.500 0.00 0.00 44.52 1.52
3321 4970 5.365605 AGAGGTGGGACATGTATCGAATTAA 59.634 40.000 0.00 0.00 44.52 1.40
3322 4971 4.899457 AGAGGTGGGACATGTATCGAATTA 59.101 41.667 0.00 0.00 44.52 1.40
3323 4972 3.711704 AGAGGTGGGACATGTATCGAATT 59.288 43.478 0.00 0.00 44.52 2.17
3324 4973 3.309296 AGAGGTGGGACATGTATCGAAT 58.691 45.455 0.00 0.00 44.52 3.34
3325 4974 2.747177 AGAGGTGGGACATGTATCGAA 58.253 47.619 0.00 0.00 44.52 3.71
3326 4975 2.454336 AGAGGTGGGACATGTATCGA 57.546 50.000 0.00 0.00 44.52 3.59
3327 4976 4.873746 AATAGAGGTGGGACATGTATCG 57.126 45.455 0.00 0.00 44.52 2.92
3351 5000 9.832445 GTCCTCAGGTAATACAGATTTATCAAA 57.168 33.333 0.00 0.00 0.00 2.69
3352 5001 8.988060 TGTCCTCAGGTAATACAGATTTATCAA 58.012 33.333 0.00 0.00 0.00 2.57
3353 5002 8.547481 TGTCCTCAGGTAATACAGATTTATCA 57.453 34.615 0.00 0.00 0.00 2.15
3355 5004 9.784531 CATTGTCCTCAGGTAATACAGATTTAT 57.215 33.333 0.00 0.00 0.00 1.40
3356 5005 8.768397 ACATTGTCCTCAGGTAATACAGATTTA 58.232 33.333 0.00 0.00 0.00 1.40
3357 5006 7.633789 ACATTGTCCTCAGGTAATACAGATTT 58.366 34.615 0.00 0.00 0.00 2.17
3358 5007 7.200434 ACATTGTCCTCAGGTAATACAGATT 57.800 36.000 0.00 0.00 0.00 2.40
3359 5008 6.814954 ACATTGTCCTCAGGTAATACAGAT 57.185 37.500 0.00 0.00 0.00 2.90
3360 5009 7.914427 ATACATTGTCCTCAGGTAATACAGA 57.086 36.000 0.00 0.00 0.00 3.41
3361 5010 8.830580 CAAATACATTGTCCTCAGGTAATACAG 58.169 37.037 0.00 0.00 34.16 2.74
3362 5011 8.731275 CAAATACATTGTCCTCAGGTAATACA 57.269 34.615 0.00 0.00 34.16 2.29
3377 5026 7.542130 GGCAGAAGAAGGTAAACAAATACATTG 59.458 37.037 0.00 0.00 44.95 2.82
3383 5032 5.474876 CAGAGGCAGAAGAAGGTAAACAAAT 59.525 40.000 0.00 0.00 0.00 2.32
3388 5037 2.639839 AGCAGAGGCAGAAGAAGGTAAA 59.360 45.455 0.00 0.00 44.61 2.01
3440 5089 3.834813 AGAGAAGATGGCACTTCACAGTA 59.165 43.478 22.73 0.00 45.83 2.74
3448 5097 5.463154 AGTATAAGGAGAGAAGATGGCACT 58.537 41.667 0.00 0.00 0.00 4.40
3475 5124 9.918630 AATAAATCAGAAAAATTCAGTCACCTG 57.081 29.630 0.00 0.00 40.25 4.00
3775 5424 6.909550 ACTCCCAAGTAAACATTAAATGCA 57.090 33.333 0.00 0.00 32.59 3.96
3776 5425 8.301002 TGTTACTCCCAAGTAAACATTAAATGC 58.699 33.333 0.00 0.00 46.76 3.56
3840 5491 5.627503 GCATTGGGAACTGATATGCCTTTTT 60.628 40.000 0.00 0.00 36.48 1.94
3841 5492 4.141869 GCATTGGGAACTGATATGCCTTTT 60.142 41.667 0.00 0.00 36.48 2.27
3865 5517 2.441750 GGGCCAGAATACCATTAGTCCA 59.558 50.000 4.39 0.00 0.00 4.02
3869 5521 3.480470 CACTGGGCCAGAATACCATTAG 58.520 50.000 38.99 10.09 35.18 1.73
3874 5526 0.323360 TTGCACTGGGCCAGAATACC 60.323 55.000 38.99 20.38 43.89 2.73
3884 5536 4.039124 ACTTCAAATAGGTTTTGCACTGGG 59.961 41.667 0.00 0.00 0.00 4.45
3887 5539 4.501400 GCCACTTCAAATAGGTTTTGCACT 60.501 41.667 0.00 0.00 0.00 4.40
3889 5541 3.244044 GGCCACTTCAAATAGGTTTTGCA 60.244 43.478 0.00 0.00 0.00 4.08
3918 5572 6.058183 GCTCATACATGGTCTTTTCTGGTAT 58.942 40.000 0.00 0.00 0.00 2.73
3930 5584 2.308570 TCAACCCTTGCTCATACATGGT 59.691 45.455 0.00 0.00 33.96 3.55
3941 5602 4.038642 TGTGGAAGTTTAATCAACCCTTGC 59.961 41.667 0.00 0.00 35.77 4.01
3954 5615 3.142174 GAGCAGCTTAGTGTGGAAGTTT 58.858 45.455 0.00 0.00 0.00 2.66
3955 5616 2.370189 AGAGCAGCTTAGTGTGGAAGTT 59.630 45.455 0.00 0.00 0.00 2.66
3967 5628 0.547712 TCCCCAACCTAGAGCAGCTT 60.548 55.000 0.00 0.00 0.00 3.74
3972 5633 1.415200 CCTACTCCCCAACCTAGAGC 58.585 60.000 0.00 0.00 0.00 4.09
4000 5661 8.890718 GGACACATAAAACTATAAAAGGACTCC 58.109 37.037 0.00 0.00 0.00 3.85
4001 5662 9.444600 TGGACACATAAAACTATAAAAGGACTC 57.555 33.333 0.00 0.00 0.00 3.36
4002 5663 9.975218 ATGGACACATAAAACTATAAAAGGACT 57.025 29.630 0.00 0.00 34.99 3.85
4015 5676 9.160496 GCATAAATGGAAAATGGACACATAAAA 57.840 29.630 0.00 0.00 35.94 1.52
4016 5677 7.768120 GGCATAAATGGAAAATGGACACATAAA 59.232 33.333 0.00 0.00 35.94 1.40
4017 5678 7.271511 GGCATAAATGGAAAATGGACACATAA 58.728 34.615 0.00 0.00 35.94 1.90
4018 5679 6.183360 GGGCATAAATGGAAAATGGACACATA 60.183 38.462 0.00 0.00 35.94 2.29
4019 5680 5.396660 GGGCATAAATGGAAAATGGACACAT 60.397 40.000 0.00 0.00 39.54 3.21
4020 5681 4.081198 GGGCATAAATGGAAAATGGACACA 60.081 41.667 0.00 0.00 0.00 3.72
4021 5682 4.081198 TGGGCATAAATGGAAAATGGACAC 60.081 41.667 0.00 0.00 0.00 3.67
4022 5683 4.099633 TGGGCATAAATGGAAAATGGACA 58.900 39.130 0.00 0.00 0.00 4.02
4088 5750 2.685897 GGCGTCAGAGAATAGACAGAGT 59.314 50.000 0.00 0.00 34.48 3.24
4137 5799 4.410099 TCATTTTCCTCTTCCTGCAACAT 58.590 39.130 0.00 0.00 0.00 2.71
4151 5813 3.368739 CCATGCCCTCTTGTTCATTTTCC 60.369 47.826 0.00 0.00 0.00 3.13
4161 5823 0.251297 TTGTCCACCATGCCCTCTTG 60.251 55.000 0.00 0.00 0.00 3.02
4168 5830 0.813184 CACATCCTTGTCCACCATGC 59.187 55.000 0.00 0.00 32.34 4.06
4176 5838 1.234821 TTGAACGGCACATCCTTGTC 58.765 50.000 0.00 0.00 32.34 3.18
4178 5840 4.433186 TTTATTGAACGGCACATCCTTG 57.567 40.909 0.00 0.00 0.00 3.61
4179 5841 5.184864 TGAATTTATTGAACGGCACATCCTT 59.815 36.000 0.00 0.00 0.00 3.36
4180 5842 4.704540 TGAATTTATTGAACGGCACATCCT 59.295 37.500 0.00 0.00 0.00 3.24
4184 5846 4.277174 ACACTGAATTTATTGAACGGCACA 59.723 37.500 0.00 0.00 0.00 4.57
4186 5848 4.517075 TGACACTGAATTTATTGAACGGCA 59.483 37.500 0.00 0.00 0.00 5.69
4187 5849 5.041951 TGACACTGAATTTATTGAACGGC 57.958 39.130 0.00 0.00 0.00 5.68
4188 5850 6.072728 TCCTTGACACTGAATTTATTGAACGG 60.073 38.462 0.00 0.00 0.00 4.44
4189 5851 6.898041 TCCTTGACACTGAATTTATTGAACG 58.102 36.000 0.00 0.00 0.00 3.95
4191 5853 7.231317 AGCTTCCTTGACACTGAATTTATTGAA 59.769 33.333 0.00 0.00 0.00 2.69
4192 5854 6.716628 AGCTTCCTTGACACTGAATTTATTGA 59.283 34.615 0.00 0.00 0.00 2.57
4231 5902 8.682936 TTTCTGTTTCTCTAGCATTCTCTTTT 57.317 30.769 0.00 0.00 0.00 2.27
4242 5913 5.468072 TGCAAAGCTCTTTCTGTTTCTCTAG 59.532 40.000 0.00 0.00 0.00 2.43
4254 5925 5.221126 CCTGACTAACTTTGCAAAGCTCTTT 60.221 40.000 33.72 23.55 39.63 2.52
4315 5986 8.796475 AGACATGTGCAAACAAGTATTCTATTT 58.204 29.630 1.15 0.00 0.00 1.40
4346 6017 7.659652 ACAGAAAGTTTCAGCAACTATCTAC 57.340 36.000 17.65 0.00 45.77 2.59
4410 6179 5.419788 TGCACAATGCTTAGGAATTCTTGAT 59.580 36.000 5.23 0.00 45.31 2.57
4427 6196 2.936919 TTCACCTCTCTGTGCACAAT 57.063 45.000 21.98 0.00 36.17 2.71
4593 6417 7.118245 CAGTGAGTTGTACAATTCTATCTGCAA 59.882 37.037 25.72 6.15 0.00 4.08
4646 6470 1.268896 GCAGCTACGTACGCCTCATTA 60.269 52.381 16.72 0.00 0.00 1.90
4655 6479 1.337387 CTCCCCTTAGCAGCTACGTAC 59.663 57.143 0.00 0.00 0.00 3.67
4667 6491 5.250774 ACTTTTTGCAGATCTACTCCCCTTA 59.749 40.000 0.00 0.00 0.00 2.69
4678 6502 6.128553 TGACGATACTGAACTTTTTGCAGATC 60.129 38.462 0.00 0.00 33.94 2.75
4682 6506 4.319477 GCTGACGATACTGAACTTTTTGCA 60.319 41.667 0.00 0.00 0.00 4.08
4685 6509 5.057149 AGTGCTGACGATACTGAACTTTTT 58.943 37.500 0.00 0.00 0.00 1.94
4687 6511 4.238514 GAGTGCTGACGATACTGAACTTT 58.761 43.478 0.00 0.00 29.75 2.66
4700 6524 5.886960 ATACCTTTTTCATGAGTGCTGAC 57.113 39.130 0.00 0.00 0.00 3.51
4703 6527 4.768968 AGCAATACCTTTTTCATGAGTGCT 59.231 37.500 0.00 0.00 33.95 4.40
4743 6666 6.095860 TCCTGCACTTTCCAAAATATCTGATG 59.904 38.462 0.00 0.00 0.00 3.07
4751 6674 2.893489 GACCTCCTGCACTTTCCAAAAT 59.107 45.455 0.00 0.00 0.00 1.82
4752 6675 2.091885 AGACCTCCTGCACTTTCCAAAA 60.092 45.455 0.00 0.00 0.00 2.44
4753 6676 1.494721 AGACCTCCTGCACTTTCCAAA 59.505 47.619 0.00 0.00 0.00 3.28
4756 6679 0.398318 ACAGACCTCCTGCACTTTCC 59.602 55.000 0.00 0.00 46.81 3.13
4767 6691 8.626526 TCCATTTTTGTTAAAACTACAGACCTC 58.373 33.333 0.00 0.00 36.15 3.85
4792 6716 3.940852 GGGCATCCAAATTGGTTTGATTC 59.059 43.478 12.28 5.21 46.03 2.52
4796 6720 2.302445 TCAGGGCATCCAAATTGGTTTG 59.698 45.455 12.28 11.80 43.43 2.93
4797 6721 2.568509 CTCAGGGCATCCAAATTGGTTT 59.431 45.455 12.28 0.00 39.03 3.27
4809 6733 2.990479 GACCGGAACTCAGGGCAT 59.010 61.111 9.46 0.00 39.20 4.40
4812 6736 4.452733 GGCGACCGGAACTCAGGG 62.453 72.222 9.46 0.00 35.41 4.45
4825 6749 4.825085 GGATGTTTAATAGAAATGGGGCGA 59.175 41.667 0.00 0.00 0.00 5.54
4826 6750 4.582656 TGGATGTTTAATAGAAATGGGGCG 59.417 41.667 0.00 0.00 0.00 6.13
4827 6751 5.598417 AGTGGATGTTTAATAGAAATGGGGC 59.402 40.000 0.00 0.00 0.00 5.80
4889 6814 5.347342 CACAAGTTACAGGCTAGAGATGAG 58.653 45.833 0.00 0.00 0.00 2.90
4890 6815 4.160439 CCACAAGTTACAGGCTAGAGATGA 59.840 45.833 0.00 0.00 0.00 2.92
4898 6827 4.041691 AGAACATACCACAAGTTACAGGCT 59.958 41.667 0.00 0.00 0.00 4.58
4908 6837 6.601613 AGAAGAAACACAAGAACATACCACAA 59.398 34.615 0.00 0.00 0.00 3.33
4910 6839 6.619801 AGAAGAAACACAAGAACATACCAC 57.380 37.500 0.00 0.00 0.00 4.16
4915 6844 5.357878 TCTGCAAGAAGAAACACAAGAACAT 59.642 36.000 0.00 0.00 42.31 2.71
4946 6875 1.527034 TGTCAGTTCCTTGAGCATGC 58.473 50.000 10.51 10.51 0.00 4.06
4974 6903 0.177836 TGGCCGTGTCTACATCATGG 59.822 55.000 0.00 0.00 42.81 3.66
4975 6904 2.138320 GATGGCCGTGTCTACATCATG 58.862 52.381 0.00 0.00 39.50 3.07
4995 6924 1.442526 GAAGCTGCCATCCATCACCG 61.443 60.000 0.00 0.00 0.00 4.94
5004 6933 1.220206 CCTGTCGAGAAGCTGCCAT 59.780 57.895 0.00 0.00 0.00 4.40
5016 6945 6.473778 CAGAAATCATGAGTTACTACCTGTCG 59.526 42.308 8.63 0.00 0.00 4.35
5025 6954 9.856488 TTAGACTACACAGAAATCATGAGTTAC 57.144 33.333 8.63 3.09 0.00 2.50
5027 6956 9.209175 GTTTAGACTACACAGAAATCATGAGTT 57.791 33.333 8.37 8.37 0.00 3.01
5028 6957 8.367911 TGTTTAGACTACACAGAAATCATGAGT 58.632 33.333 0.09 0.00 0.00 3.41
5029 6958 8.763049 TGTTTAGACTACACAGAAATCATGAG 57.237 34.615 0.09 0.00 0.00 2.90
5031 6961 8.993121 ACTTGTTTAGACTACACAGAAATCATG 58.007 33.333 1.95 0.00 0.00 3.07
5034 6964 8.819643 AGACTTGTTTAGACTACACAGAAATC 57.180 34.615 1.95 0.49 0.00 2.17
5039 6969 8.663025 TCGTATAGACTTGTTTAGACTACACAG 58.337 37.037 1.95 0.72 34.69 3.66
5041 6971 8.819152 GTCGTATAGACTTGTTTAGACTACAC 57.181 38.462 0.00 0.00 46.13 2.90
5061 6991 8.350722 GTCTGATGGAATTCTACTTATGTCGTA 58.649 37.037 5.23 0.00 0.00 3.43
5069 6999 9.432982 AGATCTTAGTCTGATGGAATTCTACTT 57.567 33.333 5.23 0.00 0.00 2.24
5070 7000 9.432982 AAGATCTTAGTCTGATGGAATTCTACT 57.567 33.333 6.06 3.09 0.00 2.57
5071 7001 9.474920 CAAGATCTTAGTCTGATGGAATTCTAC 57.525 37.037 7.86 0.00 0.00 2.59
5072 7002 9.206690 ACAAGATCTTAGTCTGATGGAATTCTA 57.793 33.333 7.86 0.00 0.00 2.10
5073 7003 8.088463 ACAAGATCTTAGTCTGATGGAATTCT 57.912 34.615 7.86 0.00 0.00 2.40
5074 7004 9.255304 GTACAAGATCTTAGTCTGATGGAATTC 57.745 37.037 7.86 0.00 0.00 2.17
5075 7005 8.207545 GGTACAAGATCTTAGTCTGATGGAATT 58.792 37.037 7.86 0.00 0.00 2.17
5076 7006 7.345653 TGGTACAAGATCTTAGTCTGATGGAAT 59.654 37.037 7.86 0.00 31.92 3.01
5077 7007 6.667848 TGGTACAAGATCTTAGTCTGATGGAA 59.332 38.462 7.86 0.00 31.92 3.53
5078 7008 6.194967 TGGTACAAGATCTTAGTCTGATGGA 58.805 40.000 7.86 0.00 31.92 3.41
5079 7009 6.471233 TGGTACAAGATCTTAGTCTGATGG 57.529 41.667 7.86 0.00 31.92 3.51
5109 7040 9.597999 CCACAATATAATATCGTGTCATGTTTG 57.402 33.333 0.00 0.00 0.00 2.93
5110 7041 9.337396 ACCACAATATAATATCGTGTCATGTTT 57.663 29.630 0.00 0.00 0.00 2.83
5141 7073 8.163408 TCCCTTCGGAAAATTATCATGATACAT 58.837 33.333 15.10 9.20 34.19 2.29
5142 7074 7.513856 TCCCTTCGGAAAATTATCATGATACA 58.486 34.615 15.10 7.37 34.19 2.29
5143 7075 7.979444 TCCCTTCGGAAAATTATCATGATAC 57.021 36.000 15.10 3.52 34.19 2.24
5144 7076 8.382405 TGATCCCTTCGGAAAATTATCATGATA 58.618 33.333 11.49 11.49 43.10 2.15
5145 7077 7.233632 TGATCCCTTCGGAAAATTATCATGAT 58.766 34.615 13.81 13.81 43.10 2.45
5146 7078 6.600388 TGATCCCTTCGGAAAATTATCATGA 58.400 36.000 0.00 0.00 43.10 3.07
5147 7079 6.882610 TGATCCCTTCGGAAAATTATCATG 57.117 37.500 0.00 0.00 43.10 3.07
5148 7080 7.175641 GTCATGATCCCTTCGGAAAATTATCAT 59.824 37.037 0.00 9.76 43.10 2.45
5153 7085 3.627577 CGTCATGATCCCTTCGGAAAATT 59.372 43.478 0.00 0.00 43.10 1.82
5158 7090 0.686441 ACCGTCATGATCCCTTCGGA 60.686 55.000 22.57 0.00 44.33 4.55
5168 7100 1.250328 ACGTCACCTTACCGTCATGA 58.750 50.000 0.00 0.00 0.00 3.07
5183 7115 4.131088 GCCACCTCCTCCGACGTC 62.131 72.222 5.18 5.18 0.00 4.34
5283 7215 4.319261 GCGTGGCTATCGTTAAAATTAGGG 60.319 45.833 0.00 0.00 0.00 3.53
5284 7216 4.510340 AGCGTGGCTATCGTTAAAATTAGG 59.490 41.667 0.00 0.00 36.99 2.69
5287 7219 3.311596 GGAGCGTGGCTATCGTTAAAATT 59.688 43.478 0.00 0.00 39.88 1.82
5289 7221 2.093869 AGGAGCGTGGCTATCGTTAAAA 60.094 45.455 0.00 0.00 39.88 1.52
5290 7222 1.479323 AGGAGCGTGGCTATCGTTAAA 59.521 47.619 0.00 0.00 39.88 1.52
5291 7223 1.108776 AGGAGCGTGGCTATCGTTAA 58.891 50.000 0.00 0.00 39.88 2.01
5292 7224 0.384309 CAGGAGCGTGGCTATCGTTA 59.616 55.000 0.00 0.00 39.88 3.18
5293 7225 1.141881 CAGGAGCGTGGCTATCGTT 59.858 57.895 0.00 0.00 39.88 3.85
5322 7262 3.243877 GCAGTATGTGTCAATACGCTCAG 59.756 47.826 0.00 0.00 37.96 3.35
5326 7266 3.243877 CAGAGCAGTATGTGTCAATACGC 59.756 47.826 0.00 0.00 37.96 4.42
5346 7286 0.036732 TGTAACCCAAGCAGAGGCAG 59.963 55.000 0.00 0.00 44.61 4.85
5351 7291 4.575885 GTCTGTAATGTAACCCAAGCAGA 58.424 43.478 0.00 0.00 31.35 4.26
5352 7292 3.370978 CGTCTGTAATGTAACCCAAGCAG 59.629 47.826 0.00 0.00 0.00 4.24
5353 7293 3.331150 CGTCTGTAATGTAACCCAAGCA 58.669 45.455 0.00 0.00 0.00 3.91
5360 7309 5.048507 GGATCTTCCCGTCTGTAATGTAAC 58.951 45.833 0.00 0.00 0.00 2.50
5361 7310 4.960469 AGGATCTTCCCGTCTGTAATGTAA 59.040 41.667 0.00 0.00 37.19 2.41
5362 7311 4.341235 CAGGATCTTCCCGTCTGTAATGTA 59.659 45.833 0.00 0.00 37.19 2.29
5363 7312 3.133003 CAGGATCTTCCCGTCTGTAATGT 59.867 47.826 0.00 0.00 37.19 2.71
5364 7313 3.493350 CCAGGATCTTCCCGTCTGTAATG 60.493 52.174 0.00 0.00 37.19 1.90
5367 7316 1.006758 ACCAGGATCTTCCCGTCTGTA 59.993 52.381 0.00 0.00 37.19 2.74
5434 7383 2.380410 GCTGCCGTCATTCGTCGTT 61.380 57.895 0.00 0.00 37.94 3.85
5446 7395 0.038709 GTGCTAGATAGAGGCTGCCG 60.039 60.000 13.96 0.00 0.00 5.69
5448 7397 3.823873 TCTTAGTGCTAGATAGAGGCTGC 59.176 47.826 0.00 0.00 0.00 5.25
5453 7402 9.283768 TCTCTTGATTCTTAGTGCTAGATAGAG 57.716 37.037 0.00 0.00 0.00 2.43
5457 7406 8.081633 CGATTCTCTTGATTCTTAGTGCTAGAT 58.918 37.037 0.00 0.00 0.00 1.98
5458 7407 7.421599 CGATTCTCTTGATTCTTAGTGCTAGA 58.578 38.462 0.00 0.00 0.00 2.43
5459 7408 6.143758 GCGATTCTCTTGATTCTTAGTGCTAG 59.856 42.308 0.00 0.00 0.00 3.42
5461 7410 4.808364 GCGATTCTCTTGATTCTTAGTGCT 59.192 41.667 0.00 0.00 0.00 4.40
5466 7415 6.041409 AGAGATGGCGATTCTCTTGATTCTTA 59.959 38.462 8.20 0.00 46.01 2.10
5483 7432 3.552604 TGCGTTACAAAAAGAGATGGC 57.447 42.857 0.00 0.00 0.00 4.40
5532 7499 4.689071 TCACGTGTCTAAGCTCAAGAAAA 58.311 39.130 16.51 0.00 0.00 2.29
5538 7505 2.404215 GCTTTCACGTGTCTAAGCTCA 58.596 47.619 28.48 5.01 39.79 4.26
5539 7506 1.727335 GGCTTTCACGTGTCTAAGCTC 59.273 52.381 31.25 23.69 41.95 4.09
5573 7541 2.254350 GCCGGCGAGTGGAAAAAC 59.746 61.111 12.58 0.00 0.00 2.43
5640 7653 0.608856 GCCATCACCCATGACACACA 60.609 55.000 0.00 0.00 37.79 3.72
5683 7709 4.054455 CACACGCACGCACGGTAC 62.054 66.667 2.61 0.00 37.37 3.34
5684 7710 3.561217 ATCACACGCACGCACGGTA 62.561 57.895 2.61 0.00 37.37 4.02
5685 7711 4.961511 ATCACACGCACGCACGGT 62.962 61.111 2.61 0.00 37.37 4.83
5686 7712 3.629491 GAATCACACGCACGCACGG 62.629 63.158 2.61 0.00 37.37 4.94
5687 7713 2.202046 GAATCACACGCACGCACG 60.202 61.111 0.00 0.00 39.50 5.34
5688 7714 1.955529 ATCGAATCACACGCACGCAC 61.956 55.000 0.00 0.00 0.00 5.34
5689 7715 1.288419 AATCGAATCACACGCACGCA 61.288 50.000 0.00 0.00 0.00 5.24
5690 7716 0.584054 GAATCGAATCACACGCACGC 60.584 55.000 0.00 0.00 0.00 5.34
5823 7850 2.824341 GTGGAGATCCCGGATATACGTT 59.176 50.000 0.73 0.00 37.93 3.99
5829 7856 0.178932 CCCTGTGGAGATCCCGGATA 60.179 60.000 0.73 0.00 37.93 2.59
5872 7925 5.619625 AGAAGAAAAATACAGCAGCACTC 57.380 39.130 0.00 0.00 0.00 3.51
5876 7929 4.406943 CGGAAGAAGAAAAATACAGCAGC 58.593 43.478 0.00 0.00 0.00 5.25
5906 7964 2.021262 ATCCTATCCTAGCAGCAGCA 57.979 50.000 3.17 0.00 45.49 4.41
5912 7970 4.711846 ACGATGCATTATCCTATCCTAGCA 59.288 41.667 0.00 0.00 35.03 3.49
5914 7972 7.819415 TCAAAACGATGCATTATCCTATCCTAG 59.181 37.037 0.00 0.00 31.82 3.02
6029 8093 4.459089 GTGGCCTGGCTCGTCTCC 62.459 72.222 19.68 0.00 0.00 3.71
6031 8095 4.008933 GTGTGGCCTGGCTCGTCT 62.009 66.667 19.68 0.00 0.00 4.18
6088 8173 2.922950 GCGGGTATGGATACGGCGA 61.923 63.158 16.62 0.00 42.51 5.54
6090 8175 2.431942 CGCGGGTATGGATACGGC 60.432 66.667 0.00 0.00 42.51 5.68
6139 8255 2.481952 CGGAAAAGCAGAACTGGAAGAG 59.518 50.000 3.99 0.00 37.43 2.85
6140 8256 2.158813 ACGGAAAAGCAGAACTGGAAGA 60.159 45.455 3.99 0.00 37.43 2.87
6141 8257 2.222027 ACGGAAAAGCAGAACTGGAAG 58.778 47.619 3.99 0.00 42.29 3.46
6142 8258 2.341846 ACGGAAAAGCAGAACTGGAA 57.658 45.000 3.99 0.00 0.00 3.53
6143 8259 2.289444 CCTACGGAAAAGCAGAACTGGA 60.289 50.000 3.99 0.00 0.00 3.86
6144 8260 2.076863 CCTACGGAAAAGCAGAACTGG 58.923 52.381 3.99 0.00 0.00 4.00
6145 8261 1.464997 GCCTACGGAAAAGCAGAACTG 59.535 52.381 0.00 0.00 0.00 3.16
6146 8262 1.071699 TGCCTACGGAAAAGCAGAACT 59.928 47.619 0.00 0.00 0.00 3.01
6147 8263 1.519408 TGCCTACGGAAAAGCAGAAC 58.481 50.000 0.00 0.00 0.00 3.01
6161 8277 0.251916 GTGTATGTGCCCACTGCCTA 59.748 55.000 0.00 0.00 40.16 3.93
6184 8303 2.104111 GCCCCAGTGTATGTAGCACATA 59.896 50.000 5.28 5.28 39.88 2.29
6232 8351 2.743928 GCCGCCCACAGAACAGAG 60.744 66.667 0.00 0.00 0.00 3.35
6297 8416 0.324943 ATGTCCTCACGTGGAAAGGG 59.675 55.000 17.00 10.37 37.93 3.95
6319 8438 2.179517 GACGGAGCCGACTCACAG 59.820 66.667 16.83 0.00 45.42 3.66
6342 8463 0.907486 TGACTGATGAGAGGGCAAGG 59.093 55.000 0.00 0.00 0.00 3.61
6343 8464 2.169978 TGATGACTGATGAGAGGGCAAG 59.830 50.000 0.00 0.00 0.00 4.01
6357 8478 0.681733 ACGGCTGTGAAGTGATGACT 59.318 50.000 0.00 0.00 0.00 3.41
6358 8479 3.217242 ACGGCTGTGAAGTGATGAC 57.783 52.632 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.