Multiple sequence alignment - TraesCS3D01G394200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G394200 chr3D 100.000 4564 0 0 1 4564 509227610 509232173 0.000000e+00 8429.0
1 TraesCS3D01G394200 chr3D 88.483 903 56 11 1633 2499 440219603 440218713 0.000000e+00 1048.0
2 TraesCS3D01G394200 chr3B 90.512 3341 144 51 524 3771 671995768 671999028 0.000000e+00 4253.0
3 TraesCS3D01G394200 chr3B 84.021 388 28 14 3948 4328 671999265 671999625 4.370000e-90 342.0
4 TraesCS3D01G394200 chr3B 83.784 333 42 3 1 333 671881393 671881713 5.740000e-79 305.0
5 TraesCS3D01G394200 chr3B 88.235 51 6 0 332 382 671995683 671995733 1.370000e-05 62.1
6 TraesCS3D01G394200 chr3A 92.114 2346 101 34 524 2821 646811492 646813801 0.000000e+00 3230.0
7 TraesCS3D01G394200 chr3A 87.848 1580 82 54 2939 4476 646813834 646815345 0.000000e+00 1753.0
8 TraesCS3D01G394200 chr3A 88.056 427 31 7 2071 2489 552510835 552510421 5.310000e-134 488.0
9 TraesCS3D01G394200 chr3A 87.912 364 39 5 1 363 646811104 646811463 1.520000e-114 424.0
10 TraesCS3D01G394200 chr2D 90.200 1102 60 11 1633 2698 571962960 571964049 0.000000e+00 1393.0
11 TraesCS3D01G394200 chr2D 91.496 635 36 6 2071 2698 29676606 29675983 0.000000e+00 857.0
12 TraesCS3D01G394200 chr2D 96.154 52 2 0 2015 2066 29676686 29676635 8.140000e-13 86.1
13 TraesCS3D01G394200 chr5D 92.283 635 31 6 2071 2698 12361395 12362018 0.000000e+00 885.0
14 TraesCS3D01G394200 chr5D 79.984 1224 166 41 2241 3444 390571937 390570773 0.000000e+00 830.0
15 TraesCS3D01G394200 chr5D 93.564 404 24 2 1122 1524 390573151 390572749 6.530000e-168 601.0
16 TraesCS3D01G394200 chr5D 80.097 206 37 4 1309 1512 527842124 527841921 2.840000e-32 150.0
17 TraesCS3D01G394200 chr5D 98.077 52 1 0 2015 2066 12361315 12361366 1.750000e-14 91.6
18 TraesCS3D01G394200 chr1D 91.969 635 33 6 2071 2698 359550397 359549774 0.000000e+00 874.0
19 TraesCS3D01G394200 chr1D 100.000 52 0 0 2015 2066 359550477 359550426 3.760000e-16 97.1
20 TraesCS3D01G394200 chr5B 80.537 1228 154 54 2241 3444 470977778 470976612 0.000000e+00 865.0
21 TraesCS3D01G394200 chr5B 93.317 404 25 2 1122 1524 470978982 470978580 3.040000e-166 595.0
22 TraesCS3D01G394200 chr5B 92.308 78 4 2 412 487 710624990 710624913 4.830000e-20 110.0
23 TraesCS3D01G394200 chr5A 80.278 1222 159 44 2242 3444 493865701 493864543 0.000000e+00 846.0
24 TraesCS3D01G394200 chr5A 92.822 404 27 2 1122 1524 493866891 493866489 6.580000e-163 584.0
25 TraesCS3D01G394200 chr4B 88.748 631 45 9 2071 2698 41177988 41178595 0.000000e+00 749.0
26 TraesCS3D01G394200 chr2B 87.588 427 33 8 2071 2489 87454029 87454443 1.150000e-130 477.0
27 TraesCS3D01G394200 chr1B 87.588 427 33 8 2071 2489 522941853 522941439 1.150000e-130 477.0
28 TraesCS3D01G394200 chr1B 84.615 91 13 1 1395 1484 628218971 628219061 6.290000e-14 89.8
29 TraesCS3D01G394200 chr7A 79.275 193 36 4 1309 1499 459210136 459209946 1.030000e-26 132.0
30 TraesCS3D01G394200 chr7B 78.238 193 38 4 1309 1499 411059978 411059788 2.230000e-23 121.0
31 TraesCS3D01G394200 chr4A 92.308 78 4 2 412 487 604084378 604084455 4.830000e-20 110.0
32 TraesCS3D01G394200 chr4A 100.000 31 0 0 421 451 598117112 598117082 1.770000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G394200 chr3D 509227610 509232173 4563 False 8429.000000 8429 100.000000 1 4564 1 chr3D.!!$F1 4563
1 TraesCS3D01G394200 chr3D 440218713 440219603 890 True 1048.000000 1048 88.483000 1633 2499 1 chr3D.!!$R1 866
2 TraesCS3D01G394200 chr3B 671995683 671999625 3942 False 1552.366667 4253 87.589333 332 4328 3 chr3B.!!$F2 3996
3 TraesCS3D01G394200 chr3A 646811104 646815345 4241 False 1802.333333 3230 89.291333 1 4476 3 chr3A.!!$F1 4475
4 TraesCS3D01G394200 chr2D 571962960 571964049 1089 False 1393.000000 1393 90.200000 1633 2698 1 chr2D.!!$F1 1065
5 TraesCS3D01G394200 chr2D 29675983 29676686 703 True 471.550000 857 93.825000 2015 2698 2 chr2D.!!$R1 683
6 TraesCS3D01G394200 chr5D 390570773 390573151 2378 True 715.500000 830 86.774000 1122 3444 2 chr5D.!!$R2 2322
7 TraesCS3D01G394200 chr5D 12361315 12362018 703 False 488.300000 885 95.180000 2015 2698 2 chr5D.!!$F1 683
8 TraesCS3D01G394200 chr1D 359549774 359550477 703 True 485.550000 874 95.984500 2015 2698 2 chr1D.!!$R1 683
9 TraesCS3D01G394200 chr5B 470976612 470978982 2370 True 730.000000 865 86.927000 1122 3444 2 chr5B.!!$R2 2322
10 TraesCS3D01G394200 chr5A 493864543 493866891 2348 True 715.000000 846 86.550000 1122 3444 2 chr5A.!!$R1 2322
11 TraesCS3D01G394200 chr4B 41177988 41178595 607 False 749.000000 749 88.748000 2071 2698 1 chr4B.!!$F1 627

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
268 269 0.101399 TGAGAGAGAAAGCGCGATCC 59.899 55.000 12.10 0.00 0.00 3.36 F
429 439 0.321346 GTACCCCCTTCGTCCGAAAA 59.679 55.000 3.52 0.00 33.34 2.29 F
503 513 0.395862 TGAAAAACAAGCCCGGGACA 60.396 50.000 29.31 6.19 0.00 4.02 F
506 516 0.396556 AAAACAAGCCCGGGACAAGT 60.397 50.000 29.31 13.94 0.00 3.16 F
1558 1614 0.596600 CCCGAATCACCATCGTACCG 60.597 60.000 0.00 0.00 38.60 4.02 F
2924 3404 1.474077 CTGGACCATGGTTTGCTAAGC 59.526 52.381 20.85 2.81 0.00 3.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1855 1926 1.141665 GCGCCTTATTTGCCAAGGG 59.858 57.895 0.0 0.0 42.47 3.95 R
2271 2744 1.346395 ACATCTAACGCCACCAGACAA 59.654 47.619 0.0 0.0 0.00 3.18 R
2273 2746 2.094762 AACATCTAACGCCACCAGAC 57.905 50.000 0.0 0.0 0.00 3.51 R
2304 2777 3.236816 CGCAGAGCACAAATTTAACAGG 58.763 45.455 0.0 0.0 0.00 4.00 R
3263 3779 1.251251 CCCCCTCAAGCTTTGTCTTG 58.749 55.000 0.0 0.0 43.53 3.02 R
4350 5004 0.107361 TCGTGCGTAGAGATGGGAGA 60.107 55.000 0.0 0.0 0.00 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 1.670083 AGTAGCAACCCCGAAACGC 60.670 57.895 0.00 0.00 0.00 4.84
45 46 2.178890 CAAGAGCTCTCGCCCATGC 61.179 63.158 18.55 0.00 36.60 4.06
102 103 1.292541 GTCGGGTCCCTCAGTTGTC 59.707 63.158 6.29 0.00 0.00 3.18
104 105 2.663196 GGGTCCCTCAGTTGTCCG 59.337 66.667 0.00 0.00 0.00 4.79
109 110 2.805353 CCTCAGTTGTCCGCGTCG 60.805 66.667 4.92 0.00 0.00 5.12
125 126 0.959372 GTCGGTCACCTCGAGGAAGA 60.959 60.000 37.69 28.59 37.31 2.87
130 131 2.622436 GTCACCTCGAGGAAGATTTGG 58.378 52.381 37.69 14.85 38.94 3.28
139 140 2.174424 GAGGAAGATTTGGAGGAGGCAT 59.826 50.000 0.00 0.00 0.00 4.40
140 141 2.091994 AGGAAGATTTGGAGGAGGCATG 60.092 50.000 0.00 0.00 0.00 4.06
150 151 1.830477 GAGGAGGCATGTCTTCTCTGT 59.170 52.381 25.75 0.00 36.65 3.41
178 179 2.131023 GAGATTGGGAGAGATGGGGTT 58.869 52.381 0.00 0.00 0.00 4.11
187 188 4.778143 GATGGGGTTGGCGACGCT 62.778 66.667 20.77 2.75 40.78 5.07
210 211 0.955428 TGCTTTGCGGTGACCAGATC 60.955 55.000 1.11 0.00 0.00 2.75
212 213 1.361668 CTTTGCGGTGACCAGATCGG 61.362 60.000 1.11 2.55 42.50 4.18
243 244 1.594331 GTTAGGGGATCGATTGGTGC 58.406 55.000 0.00 0.00 0.00 5.01
247 248 1.436983 GGGGATCGATTGGTGCGTTC 61.437 60.000 0.00 0.00 0.00 3.95
249 250 1.082117 GGATCGATTGGTGCGTTCGT 61.082 55.000 0.00 0.00 34.60 3.85
259 260 1.602165 GGTGCGTTCGTGAGAGAGAAA 60.602 52.381 0.00 0.00 43.69 2.52
266 267 0.524392 CGTGAGAGAGAAAGCGCGAT 60.524 55.000 12.10 0.00 36.46 4.58
267 268 1.196200 GTGAGAGAGAAAGCGCGATC 58.804 55.000 12.10 4.30 0.00 3.69
268 269 0.101399 TGAGAGAGAAAGCGCGATCC 59.899 55.000 12.10 0.00 0.00 3.36
270 271 1.946650 GAGAGAAAGCGCGATCCGG 60.947 63.158 12.10 0.00 37.44 5.14
281 282 2.833582 GATCCGGTGGGCTCTCGA 60.834 66.667 0.00 0.00 0.00 4.04
289 290 2.434359 GGGCTCTCGACCGGTTTG 60.434 66.667 9.42 4.72 0.00 2.93
291 292 1.446272 GGCTCTCGACCGGTTTGAG 60.446 63.158 24.42 24.42 0.00 3.02
295 296 1.446272 CTCGACCGGTTTGAGGCTC 60.446 63.158 23.27 7.79 0.00 4.70
296 297 1.878656 CTCGACCGGTTTGAGGCTCT 61.879 60.000 23.27 0.00 0.00 4.09
297 298 1.446272 CGACCGGTTTGAGGCTCTC 60.446 63.158 16.72 6.25 0.00 3.20
304 305 2.739379 CGGTTTGAGGCTCTCTTTTCTC 59.261 50.000 16.72 0.00 0.00 2.87
305 306 3.078097 GGTTTGAGGCTCTCTTTTCTCC 58.922 50.000 16.72 3.63 0.00 3.71
333 334 1.152715 CCCGAGGTAGGAGAGGACC 60.153 68.421 0.00 0.00 35.83 4.46
336 337 1.152715 GAGGTAGGAGAGGACCCGG 60.153 68.421 0.00 0.00 36.27 5.73
369 370 0.909610 TGGCTCGGAGAAGGTTGGAT 60.910 55.000 9.69 0.00 34.09 3.41
370 371 0.462759 GGCTCGGAGAAGGTTGGATG 60.463 60.000 9.69 0.00 34.09 3.51
371 372 0.462759 GCTCGGAGAAGGTTGGATGG 60.463 60.000 9.69 0.00 34.09 3.51
374 375 1.278127 TCGGAGAAGGTTGGATGGAAC 59.722 52.381 0.00 0.00 0.00 3.62
382 383 2.028385 AGGTTGGATGGAACTGTACGTC 60.028 50.000 0.00 0.00 0.00 4.34
384 385 2.735134 GTTGGATGGAACTGTACGTCAC 59.265 50.000 0.00 0.00 0.00 3.67
406 416 7.009723 GTCACGAAACCTTGCATTCTTTTTAAA 59.990 33.333 0.00 0.00 0.00 1.52
407 417 7.708752 TCACGAAACCTTGCATTCTTTTTAAAT 59.291 29.630 0.00 0.00 0.00 1.40
409 419 9.535878 ACGAAACCTTGCATTCTTTTTAAATAA 57.464 25.926 0.00 0.00 0.00 1.40
414 424 9.923143 ACCTTGCATTCTTTTTAAATAAGTACC 57.077 29.630 0.00 0.00 0.00 3.34
415 425 9.366216 CCTTGCATTCTTTTTAAATAAGTACCC 57.634 33.333 0.00 0.00 0.00 3.69
416 426 9.366216 CTTGCATTCTTTTTAAATAAGTACCCC 57.634 33.333 0.00 0.00 0.00 4.95
417 427 7.842982 TGCATTCTTTTTAAATAAGTACCCCC 58.157 34.615 0.00 0.00 0.00 5.40
418 428 7.676468 TGCATTCTTTTTAAATAAGTACCCCCT 59.324 33.333 0.00 0.00 0.00 4.79
419 429 8.537016 GCATTCTTTTTAAATAAGTACCCCCTT 58.463 33.333 0.00 0.00 0.00 3.95
421 431 7.926674 TCTTTTTAAATAAGTACCCCCTTCG 57.073 36.000 0.00 0.00 0.00 3.79
422 432 7.460910 TCTTTTTAAATAAGTACCCCCTTCGT 58.539 34.615 0.00 0.00 0.00 3.85
423 433 7.607607 TCTTTTTAAATAAGTACCCCCTTCGTC 59.392 37.037 0.00 0.00 0.00 4.20
424 434 3.920231 AAATAAGTACCCCCTTCGTCC 57.080 47.619 0.00 0.00 0.00 4.79
425 435 1.406903 ATAAGTACCCCCTTCGTCCG 58.593 55.000 0.00 0.00 0.00 4.79
426 436 0.331278 TAAGTACCCCCTTCGTCCGA 59.669 55.000 0.00 0.00 0.00 4.55
427 437 0.542702 AAGTACCCCCTTCGTCCGAA 60.543 55.000 1.81 1.81 0.00 4.30
428 438 0.542702 AGTACCCCCTTCGTCCGAAA 60.543 55.000 3.52 0.00 33.34 3.46
429 439 0.321346 GTACCCCCTTCGTCCGAAAA 59.679 55.000 3.52 0.00 33.34 2.29
430 440 1.055040 TACCCCCTTCGTCCGAAAAA 58.945 50.000 3.52 0.00 33.34 1.94
453 463 9.696917 AAAAACTTGTCCTCAAATGAATGTATC 57.303 29.630 0.00 0.00 32.87 2.24
454 464 7.396540 AACTTGTCCTCAAATGAATGTATCC 57.603 36.000 0.00 0.00 32.87 2.59
455 465 6.484288 ACTTGTCCTCAAATGAATGTATCCA 58.516 36.000 0.00 0.00 32.87 3.41
456 466 6.600822 ACTTGTCCTCAAATGAATGTATCCAG 59.399 38.462 0.00 0.00 32.87 3.86
457 467 4.883585 TGTCCTCAAATGAATGTATCCAGC 59.116 41.667 0.00 0.00 0.00 4.85
458 468 4.883585 GTCCTCAAATGAATGTATCCAGCA 59.116 41.667 0.00 0.00 0.00 4.41
459 469 4.883585 TCCTCAAATGAATGTATCCAGCAC 59.116 41.667 0.00 0.00 0.00 4.40
460 470 4.037208 CCTCAAATGAATGTATCCAGCACC 59.963 45.833 0.00 0.00 0.00 5.01
461 471 4.598022 TCAAATGAATGTATCCAGCACCA 58.402 39.130 0.00 0.00 0.00 4.17
462 472 5.015515 TCAAATGAATGTATCCAGCACCAA 58.984 37.500 0.00 0.00 0.00 3.67
463 473 5.125900 TCAAATGAATGTATCCAGCACCAAG 59.874 40.000 0.00 0.00 0.00 3.61
464 474 3.719268 TGAATGTATCCAGCACCAAGT 57.281 42.857 0.00 0.00 0.00 3.16
465 475 4.032960 TGAATGTATCCAGCACCAAGTT 57.967 40.909 0.00 0.00 0.00 2.66
466 476 5.172687 TGAATGTATCCAGCACCAAGTTA 57.827 39.130 0.00 0.00 0.00 2.24
467 477 5.185454 TGAATGTATCCAGCACCAAGTTAG 58.815 41.667 0.00 0.00 0.00 2.34
468 478 4.844349 ATGTATCCAGCACCAAGTTAGT 57.156 40.909 0.00 0.00 0.00 2.24
469 479 3.937814 TGTATCCAGCACCAAGTTAGTG 58.062 45.455 0.00 0.00 38.30 2.74
480 490 5.593010 CACCAAGTTAGTGCTAGATACTCC 58.407 45.833 0.00 0.00 0.00 3.85
481 491 5.127194 CACCAAGTTAGTGCTAGATACTCCA 59.873 44.000 0.00 0.00 0.00 3.86
482 492 5.900123 ACCAAGTTAGTGCTAGATACTCCAT 59.100 40.000 0.00 0.00 0.00 3.41
483 493 6.384305 ACCAAGTTAGTGCTAGATACTCCATT 59.616 38.462 0.00 0.00 0.00 3.16
484 494 7.092846 ACCAAGTTAGTGCTAGATACTCCATTT 60.093 37.037 0.00 0.00 0.00 2.32
485 495 7.225538 CCAAGTTAGTGCTAGATACTCCATTTG 59.774 40.741 0.00 1.99 0.00 2.32
486 496 7.661536 AGTTAGTGCTAGATACTCCATTTGA 57.338 36.000 0.00 0.00 0.00 2.69
487 497 8.079211 AGTTAGTGCTAGATACTCCATTTGAA 57.921 34.615 0.00 0.00 0.00 2.69
488 498 8.540388 AGTTAGTGCTAGATACTCCATTTGAAA 58.460 33.333 0.00 0.00 0.00 2.69
489 499 9.162764 GTTAGTGCTAGATACTCCATTTGAAAA 57.837 33.333 0.00 0.00 0.00 2.29
490 500 9.733556 TTAGTGCTAGATACTCCATTTGAAAAA 57.266 29.630 0.00 0.00 0.00 1.94
491 501 8.045176 AGTGCTAGATACTCCATTTGAAAAAC 57.955 34.615 0.00 0.00 0.00 2.43
492 502 7.665559 AGTGCTAGATACTCCATTTGAAAAACA 59.334 33.333 0.00 0.00 0.00 2.83
493 503 8.296713 GTGCTAGATACTCCATTTGAAAAACAA 58.703 33.333 0.00 0.00 36.65 2.83
494 504 8.514594 TGCTAGATACTCCATTTGAAAAACAAG 58.485 33.333 0.00 0.00 39.77 3.16
495 505 7.486232 GCTAGATACTCCATTTGAAAAACAAGC 59.514 37.037 0.00 0.00 39.77 4.01
496 506 6.691508 AGATACTCCATTTGAAAAACAAGCC 58.308 36.000 0.00 0.00 39.77 4.35
497 507 4.071961 ACTCCATTTGAAAAACAAGCCC 57.928 40.909 0.00 0.00 39.77 5.19
498 508 3.059166 CTCCATTTGAAAAACAAGCCCG 58.941 45.455 0.00 0.00 39.77 6.13
499 509 2.142319 CCATTTGAAAAACAAGCCCGG 58.858 47.619 0.00 0.00 39.77 5.73
500 510 2.142319 CATTTGAAAAACAAGCCCGGG 58.858 47.619 19.09 19.09 39.77 5.73
501 511 1.486211 TTTGAAAAACAAGCCCGGGA 58.514 45.000 29.31 0.00 39.77 5.14
502 512 0.747852 TTGAAAAACAAGCCCGGGAC 59.252 50.000 29.31 16.50 34.20 4.46
503 513 0.395862 TGAAAAACAAGCCCGGGACA 60.396 50.000 29.31 6.19 0.00 4.02
504 514 0.747852 GAAAAACAAGCCCGGGACAA 59.252 50.000 29.31 0.00 0.00 3.18
505 515 0.750249 AAAAACAAGCCCGGGACAAG 59.250 50.000 29.31 13.19 0.00 3.16
506 516 0.396556 AAAACAAGCCCGGGACAAGT 60.397 50.000 29.31 13.94 0.00 3.16
507 517 0.396556 AAACAAGCCCGGGACAAGTT 60.397 50.000 29.31 19.34 0.00 2.66
508 518 0.396556 AACAAGCCCGGGACAAGTTT 60.397 50.000 29.31 5.59 0.00 2.66
509 519 0.396556 ACAAGCCCGGGACAAGTTTT 60.397 50.000 29.31 2.46 0.00 2.43
510 520 0.750249 CAAGCCCGGGACAAGTTTTT 59.250 50.000 29.31 1.69 0.00 1.94
529 539 1.180029 TTTCGGACGGAGGAAGTAGG 58.820 55.000 0.00 0.00 0.00 3.18
541 551 5.690632 CGGAGGAAGTAGGAGAGATTAGGAA 60.691 48.000 0.00 0.00 0.00 3.36
546 556 6.381707 GGAAGTAGGAGAGATTAGGAAACACT 59.618 42.308 0.00 0.00 0.00 3.55
621 634 8.936864 CGTAACAAGAAGATCCAACTCTATTTT 58.063 33.333 0.00 0.00 0.00 1.82
654 667 3.811083 TGTTCTTACCCGCAAAAGAAGA 58.189 40.909 5.01 2.28 41.18 2.87
655 668 4.394729 TGTTCTTACCCGCAAAAGAAGAT 58.605 39.130 5.01 0.00 41.18 2.40
656 669 4.454504 TGTTCTTACCCGCAAAAGAAGATC 59.545 41.667 5.01 0.00 41.18 2.75
657 670 3.606687 TCTTACCCGCAAAAGAAGATCC 58.393 45.455 0.00 0.00 0.00 3.36
662 676 2.162408 CCCGCAAAAGAAGATCCAACTC 59.838 50.000 0.00 0.00 0.00 3.01
688 702 1.368203 TCACCCCTTCTCCCTTATCCA 59.632 52.381 0.00 0.00 0.00 3.41
760 775 6.914654 TGGAGAGAAATCCATATCAGAGAG 57.085 41.667 0.00 0.00 44.56 3.20
761 776 5.245751 TGGAGAGAAATCCATATCAGAGAGC 59.754 44.000 0.00 0.00 44.56 4.09
767 782 3.319031 TCCATATCAGAGAGCTGTGGA 57.681 47.619 0.00 0.00 40.50 4.02
768 783 2.961741 TCCATATCAGAGAGCTGTGGAC 59.038 50.000 0.00 0.00 38.91 4.02
769 784 2.697229 CCATATCAGAGAGCTGTGGACA 59.303 50.000 0.00 0.00 42.84 4.02
771 786 4.370049 CATATCAGAGAGCTGTGGACAAG 58.630 47.826 0.00 0.00 42.84 3.16
772 787 2.001076 TCAGAGAGCTGTGGACAAGA 57.999 50.000 0.00 0.00 42.84 3.02
773 788 1.891811 TCAGAGAGCTGTGGACAAGAG 59.108 52.381 0.00 0.00 42.84 2.85
774 789 1.617850 CAGAGAGCTGTGGACAAGAGT 59.382 52.381 0.00 0.00 37.37 3.24
775 790 2.822561 CAGAGAGCTGTGGACAAGAGTA 59.177 50.000 0.00 0.00 37.37 2.59
776 791 2.823154 AGAGAGCTGTGGACAAGAGTAC 59.177 50.000 0.00 0.00 0.00 2.73
777 792 1.896465 AGAGCTGTGGACAAGAGTACC 59.104 52.381 0.00 0.00 0.00 3.34
847 875 3.072476 TGACTAGGCAAAGCTGGTTAACT 59.928 43.478 0.00 0.00 0.00 2.24
913 956 1.379044 CAAGGCTCCGCATTTCCCT 60.379 57.895 0.00 0.00 27.16 4.20
934 977 1.152247 TGATCCCCTCCCATCTCCG 60.152 63.158 0.00 0.00 0.00 4.63
935 978 1.156330 GATCCCCTCCCATCTCCGA 59.844 63.158 0.00 0.00 0.00 4.55
936 979 0.902516 GATCCCCTCCCATCTCCGAG 60.903 65.000 0.00 0.00 0.00 4.63
937 980 1.372245 ATCCCCTCCCATCTCCGAGA 61.372 60.000 0.00 0.00 0.00 4.04
938 981 1.834822 CCCCTCCCATCTCCGAGAC 60.835 68.421 0.00 0.00 0.00 3.36
1010 1053 1.975660 CCACCTCACCGGAAGAAAAA 58.024 50.000 9.46 0.00 36.31 1.94
1011 1054 2.514803 CCACCTCACCGGAAGAAAAAT 58.485 47.619 9.46 0.00 36.31 1.82
1012 1055 2.488153 CCACCTCACCGGAAGAAAAATC 59.512 50.000 9.46 0.00 36.31 2.17
1013 1056 2.488153 CACCTCACCGGAAGAAAAATCC 59.512 50.000 9.46 0.00 36.31 3.01
1014 1057 2.092323 CCTCACCGGAAGAAAAATCCC 58.908 52.381 9.46 0.00 33.13 3.85
1015 1058 2.092323 CTCACCGGAAGAAAAATCCCC 58.908 52.381 9.46 0.00 33.13 4.81
1016 1059 1.182667 CACCGGAAGAAAAATCCCCC 58.817 55.000 9.46 0.00 33.13 5.40
1017 1060 0.781278 ACCGGAAGAAAAATCCCCCA 59.219 50.000 9.46 0.00 33.13 4.96
1018 1061 1.182667 CCGGAAGAAAAATCCCCCAC 58.817 55.000 0.00 0.00 33.13 4.61
1019 1062 1.549037 CCGGAAGAAAAATCCCCCACA 60.549 52.381 0.00 0.00 33.13 4.17
1020 1063 2.456577 CGGAAGAAAAATCCCCCACAT 58.543 47.619 0.00 0.00 33.13 3.21
1021 1064 2.427095 CGGAAGAAAAATCCCCCACATC 59.573 50.000 0.00 0.00 33.13 3.06
1022 1065 3.440127 GGAAGAAAAATCCCCCACATCA 58.560 45.455 0.00 0.00 0.00 3.07
1023 1066 4.033009 GGAAGAAAAATCCCCCACATCAT 58.967 43.478 0.00 0.00 0.00 2.45
1024 1067 4.100035 GGAAGAAAAATCCCCCACATCATC 59.900 45.833 0.00 0.00 0.00 2.92
1025 1068 3.290710 AGAAAAATCCCCCACATCATCG 58.709 45.455 0.00 0.00 0.00 3.84
1558 1614 0.596600 CCCGAATCACCATCGTACCG 60.597 60.000 0.00 0.00 38.60 4.02
1617 1676 4.338710 TTTCTTGCCCGTCCCCCG 62.339 66.667 0.00 0.00 0.00 5.73
1701 1765 1.739067 GGTTTCTTGGATCTGGACGG 58.261 55.000 0.00 0.00 0.00 4.79
1719 1790 2.785258 CGGCGCTAGGTTTCTTGC 59.215 61.111 7.64 0.00 38.16 4.01
1724 1795 2.750888 GCTAGGTTTCTTGCGCCGG 61.751 63.158 4.18 0.00 32.69 6.13
1855 1926 2.168521 TCTTCCGTGGAATCCAGACATC 59.831 50.000 0.27 0.00 32.34 3.06
2005 2089 7.202102 GGGGGAGACAAAATAGCTAATCTTAGA 60.202 40.741 0.00 0.00 32.47 2.10
2196 2459 3.202906 GTTTTGTACTGTCAGACTGCCA 58.797 45.455 6.91 2.40 0.00 4.92
2200 2463 4.882842 TGTACTGTCAGACTGCCATAAA 57.117 40.909 6.91 0.00 0.00 1.40
2220 2483 9.537192 CCATAAATTTAGAATTGTGCATGTCAT 57.463 29.630 3.94 0.00 0.00 3.06
2271 2744 2.097110 TGTGACCCAGAACTACCACT 57.903 50.000 0.00 0.00 0.00 4.00
2273 2746 2.104111 TGTGACCCAGAACTACCACTTG 59.896 50.000 0.00 0.00 0.00 3.16
2284 2757 2.111043 CCACTTGTCTGGTGGCGT 59.889 61.111 0.00 0.00 45.97 5.68
2301 2774 3.496884 TGGCGTTAGATGTTTCAACTGTC 59.503 43.478 0.00 0.00 0.00 3.51
2304 2777 5.374898 GCGTTAGATGTTTCAACTGTCTTC 58.625 41.667 4.30 0.00 0.00 2.87
2305 2778 5.614887 GCGTTAGATGTTTCAACTGTCTTCC 60.615 44.000 4.30 0.00 0.00 3.46
2409 2887 9.217278 TGTACTGAACTGTTAGTTTGTTGTTTA 57.783 29.630 0.00 0.00 38.80 2.01
2450 2930 7.913297 TGTACTGCACTGTTTTATTTCTTTGAC 59.087 33.333 0.00 0.00 0.00 3.18
2764 3244 2.125106 CTGTGGCGCCCTACCTTC 60.125 66.667 26.77 6.06 0.00 3.46
2828 3308 8.639761 AGTACTATACCAAGGTATGCTTTACAG 58.360 37.037 19.50 10.58 40.98 2.74
2839 3319 7.654568 AGGTATGCTTTACAGGTTTTTACAAC 58.345 34.615 0.00 0.00 0.00 3.32
2865 3345 6.698008 ATTGCGTGATGAAATCCTTATTCA 57.302 33.333 0.00 0.00 44.73 2.57
2882 3362 6.404734 CCTTATTCAATTGCTGGTTGTACTCC 60.405 42.308 0.00 0.00 0.00 3.85
2889 3369 5.685520 TTGCTGGTTGTACTCCATATGTA 57.314 39.130 9.96 0.00 34.26 2.29
2890 3370 5.887214 TGCTGGTTGTACTCCATATGTAT 57.113 39.130 9.96 0.00 34.26 2.29
2924 3404 1.474077 CTGGACCATGGTTTGCTAAGC 59.526 52.381 20.85 2.81 0.00 3.09
2987 3476 9.015577 CGAGACTTGAAGACTTAATCTGTAATC 57.984 37.037 0.00 0.00 37.88 1.75
3007 3496 7.967854 TGTAATCAACTCTTGAACTTTGTTGTG 59.032 33.333 0.00 0.00 43.95 3.33
3171 3671 1.821136 GCAAGCACCTCCTTTAGCATT 59.179 47.619 0.00 0.00 0.00 3.56
3178 3678 4.216472 GCACCTCCTTTAGCATTATTAGCC 59.784 45.833 0.00 0.00 0.00 3.93
3179 3679 4.762251 CACCTCCTTTAGCATTATTAGCCC 59.238 45.833 0.00 0.00 0.00 5.19
3183 3683 6.599638 CCTCCTTTAGCATTATTAGCCCATAC 59.400 42.308 0.00 0.00 0.00 2.39
3242 3758 3.506067 CCTTGGTGGTTGACTAATTCCAC 59.494 47.826 3.67 3.67 46.46 4.02
3317 3833 0.736636 ATGCATGTGGAGCAATCACG 59.263 50.000 0.00 0.00 46.27 4.35
3448 3964 7.432869 TGCAAATTGTATTGTAAGCTGTTCTT 58.567 30.769 0.00 0.00 38.79 2.52
3570 4088 5.700402 AGCAGGTCCTTCAATATTACTGT 57.300 39.130 0.00 0.00 0.00 3.55
3586 4104 8.732746 ATATTACTGTTGTCATTTCTGTACCC 57.267 34.615 0.00 0.00 0.00 3.69
3668 4186 1.917872 TGGGAATTTGTGGTGTAGCC 58.082 50.000 0.00 0.00 37.90 3.93
3683 4201 0.119561 TAGCCCCCTGAGGTGGTTTA 59.880 55.000 0.97 0.00 0.00 2.01
3827 4444 7.500227 TCAACTGTTCTGAAATCTTGATCAGTT 59.500 33.333 17.38 17.38 44.56 3.16
3829 4446 8.545229 ACTGTTCTGAAATCTTGATCAGTTAG 57.455 34.615 0.00 0.00 42.86 2.34
3847 4464 0.877071 AGTTCTGTTGATTGGCTGCG 59.123 50.000 0.00 0.00 0.00 5.18
3854 4471 1.300971 TTGATTGGCTGCGTCTCTGC 61.301 55.000 0.00 0.00 38.72 4.26
3901 4518 6.726258 TGCTGAACATGTGTTATCTTGTAG 57.274 37.500 0.00 0.00 38.56 2.74
3902 4519 6.230472 TGCTGAACATGTGTTATCTTGTAGT 58.770 36.000 0.00 0.00 38.56 2.73
3903 4520 7.382898 TGCTGAACATGTGTTATCTTGTAGTA 58.617 34.615 0.00 0.00 38.56 1.82
3904 4521 7.545615 TGCTGAACATGTGTTATCTTGTAGTAG 59.454 37.037 0.00 0.00 38.56 2.57
3940 4581 0.251297 TGTGCTGTATTTGCTGGGCT 60.251 50.000 0.00 0.00 0.00 5.19
3944 4585 2.029110 TGCTGTATTTGCTGGGCTTTTC 60.029 45.455 0.00 0.00 0.00 2.29
3988 4631 3.585862 TGACGCAGATCCAGAAAGTTAC 58.414 45.455 0.00 0.00 0.00 2.50
3993 4636 4.092091 CGCAGATCCAGAAAGTTACAAGTC 59.908 45.833 0.00 0.00 0.00 3.01
4148 4792 9.926751 GTTTATATGATGATGATTATTCGCTGG 57.073 33.333 0.00 0.00 0.00 4.85
4220 4870 5.942961 TGTTGTTTTGGACCATACCTCTTA 58.057 37.500 0.00 0.00 0.00 2.10
4239 4889 5.285401 TCTTACAGGTATTGATTCCAGGGA 58.715 41.667 0.00 0.00 0.00 4.20
4240 4890 5.729229 TCTTACAGGTATTGATTCCAGGGAA 59.271 40.000 2.75 2.75 38.59 3.97
4241 4891 4.236527 ACAGGTATTGATTCCAGGGAAC 57.763 45.455 2.23 0.00 36.91 3.62
4242 4892 3.591527 ACAGGTATTGATTCCAGGGAACA 59.408 43.478 2.23 1.49 36.91 3.18
4246 4896 4.141158 GGTATTGATTCCAGGGAACAGGAT 60.141 45.833 2.23 0.00 46.47 3.24
4248 4898 2.850833 TGATTCCAGGGAACAGGATCT 58.149 47.619 2.23 0.00 46.47 2.75
4276 4930 6.300354 AGTTCTGAACAAGTAAACATTCGG 57.700 37.500 21.50 0.00 0.00 4.30
4284 4938 1.924524 AGTAAACATTCGGTCGATGCG 59.075 47.619 0.00 0.00 0.00 4.73
4364 5018 9.077674 CGAAATAATTTATCTCCCATCTCTACG 57.922 37.037 0.00 0.00 0.00 3.51
4365 5019 8.779354 AAATAATTTATCTCCCATCTCTACGC 57.221 34.615 0.00 0.00 0.00 4.42
4373 5027 0.172578 CCATCTCTACGCACGAACCA 59.827 55.000 0.00 0.00 0.00 3.67
4380 5034 4.097437 TCTCTACGCACGAACCAAATAGAT 59.903 41.667 0.00 0.00 0.00 1.98
4386 5040 4.565166 CGCACGAACCAAATAGATAACAGA 59.435 41.667 0.00 0.00 0.00 3.41
4391 5045 9.961265 CACGAACCAAATAGATAACAGACTATA 57.039 33.333 0.00 0.00 0.00 1.31
4417 5074 6.618287 TTGTTCTAAGGAAGTTGACATGTG 57.382 37.500 1.15 0.00 31.46 3.21
4468 5126 4.584325 TGCAAGCAAACTTAACATTCTCCT 59.416 37.500 0.00 0.00 33.74 3.69
4476 5134 2.396590 TAACATTCTCCTGCCCGTTC 57.603 50.000 0.00 0.00 0.00 3.95
4477 5135 0.400213 AACATTCTCCTGCCCGTTCA 59.600 50.000 0.00 0.00 0.00 3.18
4478 5136 0.620556 ACATTCTCCTGCCCGTTCAT 59.379 50.000 0.00 0.00 0.00 2.57
4479 5137 1.004745 ACATTCTCCTGCCCGTTCATT 59.995 47.619 0.00 0.00 0.00 2.57
4480 5138 1.672881 CATTCTCCTGCCCGTTCATTC 59.327 52.381 0.00 0.00 0.00 2.67
4481 5139 0.391130 TTCTCCTGCCCGTTCATTCG 60.391 55.000 0.00 0.00 0.00 3.34
4482 5140 2.435938 TCCTGCCCGTTCATTCGC 60.436 61.111 0.00 0.00 0.00 4.70
4483 5141 3.508840 CCTGCCCGTTCATTCGCC 61.509 66.667 0.00 0.00 0.00 5.54
4484 5142 2.745884 CTGCCCGTTCATTCGCCA 60.746 61.111 0.00 0.00 0.00 5.69
4485 5143 2.281831 TGCCCGTTCATTCGCCAA 60.282 55.556 0.00 0.00 0.00 4.52
4486 5144 1.861542 CTGCCCGTTCATTCGCCAAA 61.862 55.000 0.00 0.00 0.00 3.28
4487 5145 1.287503 GCCCGTTCATTCGCCAAAA 59.712 52.632 0.00 0.00 0.00 2.44
4488 5146 1.006825 GCCCGTTCATTCGCCAAAAC 61.007 55.000 0.00 0.00 0.00 2.43
4489 5147 0.312416 CCCGTTCATTCGCCAAAACA 59.688 50.000 0.00 0.00 0.00 2.83
4490 5148 1.067915 CCCGTTCATTCGCCAAAACAT 60.068 47.619 0.00 0.00 0.00 2.71
4491 5149 2.250188 CCGTTCATTCGCCAAAACATC 58.750 47.619 0.00 0.00 0.00 3.06
4492 5150 2.351253 CCGTTCATTCGCCAAAACATCA 60.351 45.455 0.00 0.00 0.00 3.07
4493 5151 3.500982 CGTTCATTCGCCAAAACATCAT 58.499 40.909 0.00 0.00 0.00 2.45
4494 5152 4.438065 CCGTTCATTCGCCAAAACATCATA 60.438 41.667 0.00 0.00 0.00 2.15
4495 5153 5.092105 CGTTCATTCGCCAAAACATCATAA 58.908 37.500 0.00 0.00 0.00 1.90
4496 5154 5.227805 CGTTCATTCGCCAAAACATCATAAG 59.772 40.000 0.00 0.00 0.00 1.73
4497 5155 6.321717 GTTCATTCGCCAAAACATCATAAGA 58.678 36.000 0.00 0.00 0.00 2.10
4498 5156 6.122850 TCATTCGCCAAAACATCATAAGAG 57.877 37.500 0.00 0.00 0.00 2.85
4499 5157 5.647658 TCATTCGCCAAAACATCATAAGAGT 59.352 36.000 0.00 0.00 0.00 3.24
4500 5158 5.957842 TTCGCCAAAACATCATAAGAGTT 57.042 34.783 0.00 0.00 0.00 3.01
4501 5159 5.295431 TCGCCAAAACATCATAAGAGTTG 57.705 39.130 0.00 0.00 0.00 3.16
4502 5160 5.000591 TCGCCAAAACATCATAAGAGTTGA 58.999 37.500 0.00 0.00 0.00 3.18
4503 5161 5.122239 TCGCCAAAACATCATAAGAGTTGAG 59.878 40.000 0.00 0.00 0.00 3.02
4504 5162 5.122239 CGCCAAAACATCATAAGAGTTGAGA 59.878 40.000 0.00 0.00 0.00 3.27
4505 5163 6.348458 CGCCAAAACATCATAAGAGTTGAGAA 60.348 38.462 0.00 0.00 0.00 2.87
4506 5164 6.803807 GCCAAAACATCATAAGAGTTGAGAAC 59.196 38.462 0.00 0.00 0.00 3.01
4507 5165 7.522073 GCCAAAACATCATAAGAGTTGAGAACA 60.522 37.037 0.00 0.00 0.00 3.18
4508 5166 8.019669 CCAAAACATCATAAGAGTTGAGAACAG 58.980 37.037 0.00 0.00 0.00 3.16
4509 5167 6.734104 AACATCATAAGAGTTGAGAACAGC 57.266 37.500 0.00 0.00 0.00 4.40
4510 5168 5.798132 ACATCATAAGAGTTGAGAACAGCA 58.202 37.500 0.00 0.00 0.00 4.41
4511 5169 5.641209 ACATCATAAGAGTTGAGAACAGCAC 59.359 40.000 0.00 0.00 0.00 4.40
4512 5170 4.569943 TCATAAGAGTTGAGAACAGCACC 58.430 43.478 0.00 0.00 0.00 5.01
4513 5171 1.871080 AAGAGTTGAGAACAGCACCG 58.129 50.000 0.00 0.00 0.00 4.94
4514 5172 0.753262 AGAGTTGAGAACAGCACCGT 59.247 50.000 0.00 0.00 0.00 4.83
4515 5173 1.140816 GAGTTGAGAACAGCACCGTC 58.859 55.000 0.00 0.00 0.00 4.79
4516 5174 0.597637 AGTTGAGAACAGCACCGTCG 60.598 55.000 0.00 0.00 0.00 5.12
4517 5175 0.874607 GTTGAGAACAGCACCGTCGT 60.875 55.000 0.00 0.00 0.00 4.34
4518 5176 0.596600 TTGAGAACAGCACCGTCGTC 60.597 55.000 0.00 0.00 0.00 4.20
4519 5177 2.050351 AGAACAGCACCGTCGTCG 60.050 61.111 0.00 0.00 0.00 5.12
4520 5178 2.354305 GAACAGCACCGTCGTCGT 60.354 61.111 0.71 0.00 35.01 4.34
4521 5179 2.354305 AACAGCACCGTCGTCGTC 60.354 61.111 0.71 0.00 35.01 4.20
4522 5180 4.678269 ACAGCACCGTCGTCGTCG 62.678 66.667 4.87 4.87 38.55 5.12
4523 5181 4.678269 CAGCACCGTCGTCGTCGT 62.678 66.667 10.76 0.00 38.33 4.34
4524 5182 4.380628 AGCACCGTCGTCGTCGTC 62.381 66.667 10.76 0.00 38.33 4.20
4525 5183 4.671549 GCACCGTCGTCGTCGTCA 62.672 66.667 10.76 0.00 38.33 4.35
4526 5184 2.175078 CACCGTCGTCGTCGTCAT 59.825 61.111 10.76 0.00 38.33 3.06
4527 5185 1.421093 CACCGTCGTCGTCGTCATA 59.579 57.895 10.76 0.00 38.33 2.15
4528 5186 0.585764 CACCGTCGTCGTCGTCATAG 60.586 60.000 10.76 0.00 38.33 2.23
4529 5187 1.016130 ACCGTCGTCGTCGTCATAGT 61.016 55.000 10.76 0.00 38.33 2.12
4530 5188 0.585764 CCGTCGTCGTCGTCATAGTG 60.586 60.000 10.76 0.00 38.33 2.74
4531 5189 1.186339 CGTCGTCGTCGTCATAGTGC 61.186 60.000 3.67 0.00 38.33 4.40
4532 5190 0.179207 GTCGTCGTCGTCATAGTGCA 60.179 55.000 1.33 0.00 38.33 4.57
4533 5191 0.179207 TCGTCGTCGTCATAGTGCAC 60.179 55.000 9.40 9.40 38.33 4.57
4534 5192 1.453603 CGTCGTCGTCATAGTGCACG 61.454 60.000 12.01 0.00 37.36 5.34
4535 5193 0.453950 GTCGTCGTCATAGTGCACGT 60.454 55.000 12.01 0.96 37.30 4.49
4536 5194 1.077915 TCGTCGTCATAGTGCACGTA 58.922 50.000 12.01 4.85 37.30 3.57
4537 5195 1.667212 TCGTCGTCATAGTGCACGTAT 59.333 47.619 12.01 7.07 37.30 3.06
4538 5196 2.034789 CGTCGTCATAGTGCACGTATC 58.965 52.381 12.01 1.81 37.30 2.24
4539 5197 2.034789 GTCGTCATAGTGCACGTATCG 58.965 52.381 12.01 13.58 37.30 2.92
4540 5198 0.770590 CGTCATAGTGCACGTATCGC 59.229 55.000 12.01 0.88 0.00 4.58
4541 5199 1.835121 GTCATAGTGCACGTATCGCA 58.165 50.000 12.01 0.00 36.94 5.10
4542 5200 2.394708 GTCATAGTGCACGTATCGCAT 58.605 47.619 12.01 0.00 42.32 4.73
4543 5201 3.561503 GTCATAGTGCACGTATCGCATA 58.438 45.455 12.01 0.00 42.32 3.14
4544 5202 3.978855 GTCATAGTGCACGTATCGCATAA 59.021 43.478 12.01 0.00 42.32 1.90
4545 5203 4.443063 GTCATAGTGCACGTATCGCATAAA 59.557 41.667 12.01 0.00 42.32 1.40
4546 5204 5.044558 TCATAGTGCACGTATCGCATAAAA 58.955 37.500 12.01 0.00 42.32 1.52
4547 5205 3.651562 AGTGCACGTATCGCATAAAAC 57.348 42.857 12.01 0.00 42.32 2.43
4548 5206 2.997303 AGTGCACGTATCGCATAAAACA 59.003 40.909 12.01 0.00 42.32 2.83
4549 5207 3.621268 AGTGCACGTATCGCATAAAACAT 59.379 39.130 12.01 0.00 42.32 2.71
4550 5208 4.094294 AGTGCACGTATCGCATAAAACATT 59.906 37.500 12.01 0.00 42.32 2.71
4551 5209 4.433304 GTGCACGTATCGCATAAAACATTC 59.567 41.667 0.00 0.00 42.32 2.67
4552 5210 4.331443 TGCACGTATCGCATAAAACATTCT 59.669 37.500 0.00 0.00 33.55 2.40
4553 5211 4.666176 GCACGTATCGCATAAAACATTCTG 59.334 41.667 0.00 0.00 0.00 3.02
4554 5212 5.197549 CACGTATCGCATAAAACATTCTGG 58.802 41.667 0.00 0.00 0.00 3.86
4555 5213 5.006261 CACGTATCGCATAAAACATTCTGGA 59.994 40.000 0.00 0.00 0.00 3.86
4556 5214 5.583061 ACGTATCGCATAAAACATTCTGGAA 59.417 36.000 0.00 0.00 0.00 3.53
4557 5215 6.092944 ACGTATCGCATAAAACATTCTGGAAA 59.907 34.615 0.00 0.00 0.00 3.13
4558 5216 7.132213 CGTATCGCATAAAACATTCTGGAAAT 58.868 34.615 0.00 0.00 0.00 2.17
4559 5217 7.643764 CGTATCGCATAAAACATTCTGGAAATT 59.356 33.333 0.00 0.00 0.00 1.82
4560 5218 7.760131 ATCGCATAAAACATTCTGGAAATTG 57.240 32.000 0.00 0.00 0.00 2.32
4561 5219 6.686630 TCGCATAAAACATTCTGGAAATTGT 58.313 32.000 0.00 0.00 0.00 2.71
4562 5220 6.585702 TCGCATAAAACATTCTGGAAATTGTG 59.414 34.615 0.00 0.00 0.00 3.33
4563 5221 6.183360 CGCATAAAACATTCTGGAAATTGTGG 60.183 38.462 0.00 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 1.670083 GCGTTTCGGGGTTGCTACT 60.670 57.895 0.00 0.00 0.00 2.57
11 12 4.572571 TGGCGTTTCGGGGTTGCT 62.573 61.111 0.00 0.00 0.00 3.91
15 16 2.032071 CTCTTGGCGTTTCGGGGT 59.968 61.111 0.00 0.00 0.00 4.95
63 64 2.202946 GCCGCCTGGAGCTACTTC 60.203 66.667 0.00 0.00 40.39 3.01
88 89 2.047179 GCGGACAACTGAGGGACC 60.047 66.667 0.00 0.00 0.00 4.46
104 105 4.477975 CCTCGAGGTGACCGACGC 62.478 72.222 24.04 0.00 32.18 5.19
109 110 2.622436 CAAATCTTCCTCGAGGTGACC 58.378 52.381 30.17 0.00 36.34 4.02
112 113 2.419297 CCTCCAAATCTTCCTCGAGGTG 60.419 54.545 30.17 22.78 33.64 4.00
119 120 1.673767 TGCCTCCTCCAAATCTTCCT 58.326 50.000 0.00 0.00 0.00 3.36
125 126 2.579860 AGAAGACATGCCTCCTCCAAAT 59.420 45.455 0.00 0.00 0.00 2.32
130 131 1.830477 ACAGAGAAGACATGCCTCCTC 59.170 52.381 0.00 0.00 0.00 3.71
139 140 1.681264 TCGTGAGCAACAGAGAAGACA 59.319 47.619 0.00 0.00 0.00 3.41
140 141 2.030717 TCTCGTGAGCAACAGAGAAGAC 60.031 50.000 9.78 0.00 36.31 3.01
150 151 1.205655 CTCTCCCAATCTCGTGAGCAA 59.794 52.381 0.00 0.00 0.00 3.91
187 188 0.821301 TGGTCACCGCAAAGCATTCA 60.821 50.000 0.00 0.00 0.00 2.57
210 211 1.400737 CCTAACCCTACTCACTCCCG 58.599 60.000 0.00 0.00 0.00 5.14
212 213 1.290130 TCCCCTAACCCTACTCACTCC 59.710 57.143 0.00 0.00 0.00 3.85
243 244 0.978385 CGCTTTCTCTCTCACGAACG 59.022 55.000 0.00 0.00 0.00 3.95
247 248 0.524392 ATCGCGCTTTCTCTCTCACG 60.524 55.000 5.56 0.00 0.00 4.35
249 250 0.101399 GGATCGCGCTTTCTCTCTCA 59.899 55.000 5.56 0.00 0.00 3.27
270 271 3.236003 AAACCGGTCGAGAGCCCAC 62.236 63.158 8.04 0.00 0.00 4.61
271 272 2.920912 AAACCGGTCGAGAGCCCA 60.921 61.111 8.04 0.00 0.00 5.36
281 282 0.765510 AAAGAGAGCCTCAAACCGGT 59.234 50.000 0.00 0.00 32.06 5.28
289 290 0.176910 CCGGGAGAAAAGAGAGCCTC 59.823 60.000 0.00 0.00 0.00 4.70
291 292 0.391793 CACCGGGAGAAAAGAGAGCC 60.392 60.000 6.32 0.00 0.00 4.70
295 296 2.552743 GGTTTTCACCGGGAGAAAAGAG 59.447 50.000 27.19 0.43 43.34 2.85
296 297 2.578786 GGTTTTCACCGGGAGAAAAGA 58.421 47.619 27.19 12.46 43.34 2.52
297 298 1.611977 GGGTTTTCACCGGGAGAAAAG 59.388 52.381 27.19 2.59 45.39 2.27
322 323 3.414193 TCGCCGGGTCCTCTCCTA 61.414 66.667 2.18 0.00 0.00 2.94
324 325 4.816984 TCTCGCCGGGTCCTCTCC 62.817 72.222 2.18 0.00 0.00 3.71
336 337 3.255379 GCCACGATCGGTTCTCGC 61.255 66.667 20.98 7.27 39.71 5.03
369 370 2.462889 GTTTCGTGACGTACAGTTCCA 58.537 47.619 4.40 0.00 0.00 3.53
370 371 1.788886 GGTTTCGTGACGTACAGTTCC 59.211 52.381 4.40 0.00 0.00 3.62
371 372 2.735823 AGGTTTCGTGACGTACAGTTC 58.264 47.619 4.40 0.00 0.00 3.01
374 375 1.191647 GCAAGGTTTCGTGACGTACAG 59.808 52.381 4.40 0.87 0.00 2.74
382 383 6.820470 TTAAAAAGAATGCAAGGTTTCGTG 57.180 33.333 0.00 0.00 0.00 4.35
406 416 1.063717 TCGGACGAAGGGGGTACTTAT 60.064 52.381 0.00 0.00 0.00 1.73
407 417 0.331278 TCGGACGAAGGGGGTACTTA 59.669 55.000 0.00 0.00 0.00 2.24
409 419 0.542702 TTTCGGACGAAGGGGGTACT 60.543 55.000 7.25 0.00 35.38 2.73
410 420 0.321346 TTTTCGGACGAAGGGGGTAC 59.679 55.000 7.25 0.00 35.38 3.34
411 421 1.055040 TTTTTCGGACGAAGGGGGTA 58.945 50.000 7.25 0.00 35.38 3.69
412 422 1.838490 TTTTTCGGACGAAGGGGGT 59.162 52.632 7.25 0.00 35.38 4.95
427 437 9.696917 GATACATTCATTTGAGGACAAGTTTTT 57.303 29.630 0.00 0.00 37.32 1.94
428 438 8.306761 GGATACATTCATTTGAGGACAAGTTTT 58.693 33.333 0.00 0.00 37.32 2.43
429 439 7.451255 TGGATACATTCATTTGAGGACAAGTTT 59.549 33.333 0.00 0.00 46.17 2.66
430 440 6.947733 TGGATACATTCATTTGAGGACAAGTT 59.052 34.615 0.00 0.00 46.17 2.66
431 441 6.484288 TGGATACATTCATTTGAGGACAAGT 58.516 36.000 0.00 0.00 46.17 3.16
456 466 5.965344 GGAGTATCTAGCACTAACTTGGTGC 60.965 48.000 19.67 19.67 46.86 5.01
457 467 5.127194 TGGAGTATCTAGCACTAACTTGGTG 59.873 44.000 0.97 0.97 34.89 4.17
458 468 5.269991 TGGAGTATCTAGCACTAACTTGGT 58.730 41.667 0.00 0.00 33.73 3.67
459 469 5.854010 TGGAGTATCTAGCACTAACTTGG 57.146 43.478 0.00 0.00 33.73 3.61
460 470 7.981789 TCAAATGGAGTATCTAGCACTAACTTG 59.018 37.037 0.00 1.45 33.73 3.16
461 471 8.079211 TCAAATGGAGTATCTAGCACTAACTT 57.921 34.615 0.00 0.00 33.73 2.66
462 472 7.661536 TCAAATGGAGTATCTAGCACTAACT 57.338 36.000 0.00 0.00 33.73 2.24
463 473 8.718102 TTTCAAATGGAGTATCTAGCACTAAC 57.282 34.615 0.00 0.00 33.73 2.34
464 474 9.733556 TTTTTCAAATGGAGTATCTAGCACTAA 57.266 29.630 0.00 0.00 33.73 2.24
465 475 9.162764 GTTTTTCAAATGGAGTATCTAGCACTA 57.837 33.333 0.00 0.00 33.73 2.74
466 476 7.665559 TGTTTTTCAAATGGAGTATCTAGCACT 59.334 33.333 0.00 0.00 33.73 4.40
467 477 7.816640 TGTTTTTCAAATGGAGTATCTAGCAC 58.183 34.615 0.00 0.00 33.73 4.40
468 478 7.994425 TGTTTTTCAAATGGAGTATCTAGCA 57.006 32.000 0.00 0.00 33.73 3.49
469 479 7.486232 GCTTGTTTTTCAAATGGAGTATCTAGC 59.514 37.037 0.00 0.00 35.48 3.42
470 480 7.970614 GGCTTGTTTTTCAAATGGAGTATCTAG 59.029 37.037 0.00 0.00 35.48 2.43
471 481 7.093945 GGGCTTGTTTTTCAAATGGAGTATCTA 60.094 37.037 0.00 0.00 35.48 1.98
472 482 6.295292 GGGCTTGTTTTTCAAATGGAGTATCT 60.295 38.462 0.00 0.00 35.48 1.98
473 483 5.869344 GGGCTTGTTTTTCAAATGGAGTATC 59.131 40.000 0.00 0.00 35.48 2.24
474 484 5.566627 CGGGCTTGTTTTTCAAATGGAGTAT 60.567 40.000 0.00 0.00 35.48 2.12
475 485 4.261825 CGGGCTTGTTTTTCAAATGGAGTA 60.262 41.667 0.00 0.00 35.48 2.59
476 486 3.492482 CGGGCTTGTTTTTCAAATGGAGT 60.492 43.478 0.00 0.00 35.48 3.85
477 487 3.059166 CGGGCTTGTTTTTCAAATGGAG 58.941 45.455 0.00 0.00 35.48 3.86
478 488 2.224161 CCGGGCTTGTTTTTCAAATGGA 60.224 45.455 0.00 0.00 35.48 3.41
479 489 2.142319 CCGGGCTTGTTTTTCAAATGG 58.858 47.619 0.00 0.00 35.48 3.16
480 490 2.142319 CCCGGGCTTGTTTTTCAAATG 58.858 47.619 8.08 0.00 35.48 2.32
481 491 2.043227 TCCCGGGCTTGTTTTTCAAAT 58.957 42.857 18.49 0.00 35.48 2.32
482 492 1.137282 GTCCCGGGCTTGTTTTTCAAA 59.863 47.619 18.49 0.00 35.48 2.69
483 493 0.747852 GTCCCGGGCTTGTTTTTCAA 59.252 50.000 18.49 0.00 34.61 2.69
484 494 0.395862 TGTCCCGGGCTTGTTTTTCA 60.396 50.000 18.49 0.46 0.00 2.69
485 495 0.747852 TTGTCCCGGGCTTGTTTTTC 59.252 50.000 18.49 0.00 0.00 2.29
486 496 0.750249 CTTGTCCCGGGCTTGTTTTT 59.250 50.000 18.49 0.00 0.00 1.94
487 497 0.396556 ACTTGTCCCGGGCTTGTTTT 60.397 50.000 18.49 0.00 0.00 2.43
488 498 0.396556 AACTTGTCCCGGGCTTGTTT 60.397 50.000 18.49 2.76 0.00 2.83
489 499 0.396556 AAACTTGTCCCGGGCTTGTT 60.397 50.000 18.49 14.85 0.00 2.83
490 500 0.396556 AAAACTTGTCCCGGGCTTGT 60.397 50.000 18.49 9.10 0.00 3.16
491 501 0.750249 AAAAACTTGTCCCGGGCTTG 59.250 50.000 18.49 8.39 0.00 4.01
492 502 3.217321 AAAAACTTGTCCCGGGCTT 57.783 47.368 18.49 0.00 0.00 4.35
508 518 2.028748 CCTACTTCCTCCGTCCGAAAAA 60.029 50.000 0.00 0.00 0.00 1.94
509 519 1.547372 CCTACTTCCTCCGTCCGAAAA 59.453 52.381 0.00 0.00 0.00 2.29
510 520 1.180029 CCTACTTCCTCCGTCCGAAA 58.820 55.000 0.00 0.00 0.00 3.46
511 521 0.329261 TCCTACTTCCTCCGTCCGAA 59.671 55.000 0.00 0.00 0.00 4.30
512 522 0.107312 CTCCTACTTCCTCCGTCCGA 60.107 60.000 0.00 0.00 0.00 4.55
513 523 0.107312 TCTCCTACTTCCTCCGTCCG 60.107 60.000 0.00 0.00 0.00 4.79
514 524 1.212441 TCTCTCCTACTTCCTCCGTCC 59.788 57.143 0.00 0.00 0.00 4.79
515 525 2.713863 TCTCTCCTACTTCCTCCGTC 57.286 55.000 0.00 0.00 0.00 4.79
516 526 3.673543 AATCTCTCCTACTTCCTCCGT 57.326 47.619 0.00 0.00 0.00 4.69
517 527 4.076394 CCTAATCTCTCCTACTTCCTCCG 58.924 52.174 0.00 0.00 0.00 4.63
518 528 5.327737 TCCTAATCTCTCCTACTTCCTCC 57.672 47.826 0.00 0.00 0.00 4.30
519 529 6.608002 TGTTTCCTAATCTCTCCTACTTCCTC 59.392 42.308 0.00 0.00 0.00 3.71
520 530 6.381707 GTGTTTCCTAATCTCTCCTACTTCCT 59.618 42.308 0.00 0.00 0.00 3.36
521 531 6.381707 AGTGTTTCCTAATCTCTCCTACTTCC 59.618 42.308 0.00 0.00 0.00 3.46
522 532 7.412853 AGTGTTTCCTAATCTCTCCTACTTC 57.587 40.000 0.00 0.00 0.00 3.01
523 533 7.894364 TGTAGTGTTTCCTAATCTCTCCTACTT 59.106 37.037 0.00 0.00 0.00 2.24
524 534 7.411808 TGTAGTGTTTCCTAATCTCTCCTACT 58.588 38.462 0.00 0.00 0.00 2.57
529 539 9.660180 AGAAAATGTAGTGTTTCCTAATCTCTC 57.340 33.333 0.00 0.00 34.85 3.20
580 590 1.070289 GTTACGGATAAGAGGGGCTGG 59.930 57.143 0.00 0.00 0.00 4.85
586 599 6.183360 TGGATCTTCTTGTTACGGATAAGAGG 60.183 42.308 0.00 4.27 36.91 3.69
621 634 2.026262 GGTAAGAACAGCCTCATCCCAA 60.026 50.000 0.00 0.00 0.00 4.12
622 635 1.559682 GGTAAGAACAGCCTCATCCCA 59.440 52.381 0.00 0.00 0.00 4.37
623 636 1.134068 GGGTAAGAACAGCCTCATCCC 60.134 57.143 0.00 0.00 33.12 3.85
654 667 2.192263 GGGGTGAGAGAAGAGTTGGAT 58.808 52.381 0.00 0.00 0.00 3.41
655 668 1.150135 AGGGGTGAGAGAAGAGTTGGA 59.850 52.381 0.00 0.00 0.00 3.53
656 669 1.650528 AGGGGTGAGAGAAGAGTTGG 58.349 55.000 0.00 0.00 0.00 3.77
657 670 2.903135 AGAAGGGGTGAGAGAAGAGTTG 59.097 50.000 0.00 0.00 0.00 3.16
662 676 1.199615 GGGAGAAGGGGTGAGAGAAG 58.800 60.000 0.00 0.00 0.00 2.85
755 770 2.008242 ACTCTTGTCCACAGCTCTCT 57.992 50.000 0.00 0.00 0.00 3.10
756 771 2.094442 GGTACTCTTGTCCACAGCTCTC 60.094 54.545 0.00 0.00 0.00 3.20
759 774 0.603569 CGGTACTCTTGTCCACAGCT 59.396 55.000 0.00 0.00 0.00 4.24
760 775 0.389948 CCGGTACTCTTGTCCACAGC 60.390 60.000 0.00 0.00 0.00 4.40
761 776 0.389948 GCCGGTACTCTTGTCCACAG 60.390 60.000 1.90 0.00 0.00 3.66
767 782 0.537188 CTGATGGCCGGTACTCTTGT 59.463 55.000 1.90 0.00 0.00 3.16
768 783 0.824109 TCTGATGGCCGGTACTCTTG 59.176 55.000 1.90 0.00 0.00 3.02
769 784 1.794714 ATCTGATGGCCGGTACTCTT 58.205 50.000 1.90 0.00 0.00 2.85
771 786 1.412710 TGAATCTGATGGCCGGTACTC 59.587 52.381 1.90 0.00 0.00 2.59
772 787 1.414181 CTGAATCTGATGGCCGGTACT 59.586 52.381 1.90 0.00 0.00 2.73
773 788 1.139058 ACTGAATCTGATGGCCGGTAC 59.861 52.381 1.90 0.00 0.00 3.34
774 789 1.496060 ACTGAATCTGATGGCCGGTA 58.504 50.000 1.90 0.00 0.00 4.02
775 790 0.620556 AACTGAATCTGATGGCCGGT 59.379 50.000 1.90 0.00 0.00 5.28
776 791 1.672881 GAAACTGAATCTGATGGCCGG 59.327 52.381 0.00 0.00 0.00 6.13
777 792 1.672881 GGAAACTGAATCTGATGGCCG 59.327 52.381 0.00 0.00 0.00 6.13
847 875 1.377987 GGCGGTGTAATCTTGGCCA 60.378 57.895 0.00 0.00 40.24 5.36
913 956 0.470080 GAGATGGGAGGGGATCACGA 60.470 60.000 0.00 0.00 32.01 4.35
1010 1053 2.833913 GGGCGATGATGTGGGGGAT 61.834 63.158 0.00 0.00 0.00 3.85
1011 1054 3.488569 GGGCGATGATGTGGGGGA 61.489 66.667 0.00 0.00 0.00 4.81
1012 1055 4.586235 GGGGCGATGATGTGGGGG 62.586 72.222 0.00 0.00 0.00 5.40
1013 1056 4.586235 GGGGGCGATGATGTGGGG 62.586 72.222 0.00 0.00 0.00 4.96
1014 1057 2.965716 GAAGGGGGCGATGATGTGGG 62.966 65.000 0.00 0.00 0.00 4.61
1015 1058 1.526917 GAAGGGGGCGATGATGTGG 60.527 63.158 0.00 0.00 0.00 4.17
1016 1059 1.526917 GGAAGGGGGCGATGATGTG 60.527 63.158 0.00 0.00 0.00 3.21
1017 1060 1.355718 ATGGAAGGGGGCGATGATGT 61.356 55.000 0.00 0.00 0.00 3.06
1018 1061 0.178981 AATGGAAGGGGGCGATGATG 60.179 55.000 0.00 0.00 0.00 3.07
1019 1062 0.111253 GAATGGAAGGGGGCGATGAT 59.889 55.000 0.00 0.00 0.00 2.45
1020 1063 1.531748 GAATGGAAGGGGGCGATGA 59.468 57.895 0.00 0.00 0.00 2.92
1021 1064 1.529244 GGAATGGAAGGGGGCGATG 60.529 63.158 0.00 0.00 0.00 3.84
1022 1065 1.697754 AGGAATGGAAGGGGGCGAT 60.698 57.895 0.00 0.00 0.00 4.58
1023 1066 2.286121 AGGAATGGAAGGGGGCGA 60.286 61.111 0.00 0.00 0.00 5.54
1024 1067 2.193248 GAGGAATGGAAGGGGGCG 59.807 66.667 0.00 0.00 0.00 6.13
1025 1068 2.603580 GGAGGAATGGAAGGGGGC 59.396 66.667 0.00 0.00 0.00 5.80
1533 1589 2.965716 GATGGTGATTCGGGGCAGGG 62.966 65.000 0.00 0.00 0.00 4.45
1536 1592 1.331399 TACGATGGTGATTCGGGGCA 61.331 55.000 0.00 0.00 40.83 5.36
1558 1614 5.068067 ACGGAAGAGAAAGAATCTAGTAGGC 59.932 44.000 0.00 0.00 38.96 3.93
1617 1676 3.554692 CCAGATCACGCGCGGTTC 61.555 66.667 35.22 25.16 0.00 3.62
1638 1697 2.836360 GACGGGATCGGGCTGGTA 60.836 66.667 0.00 0.00 41.39 3.25
1701 1765 2.785258 CAAGAAACCTAGCGCCGC 59.215 61.111 2.29 0.00 0.00 6.53
1724 1795 1.423845 CACCTAATGCGCACCGAAC 59.576 57.895 14.90 0.00 0.00 3.95
1855 1926 1.141665 GCGCCTTATTTGCCAAGGG 59.858 57.895 0.00 0.00 42.47 3.95
2005 2089 7.151999 TGATTTGTTTCATATAACGGCACTT 57.848 32.000 0.00 0.00 0.00 3.16
2066 2152 3.490759 GTGCATCACACGGAGCCG 61.491 66.667 7.48 7.48 40.07 5.52
2174 2435 2.221055 GGCAGTCTGACAGTACAAAACG 59.779 50.000 10.88 0.00 0.00 3.60
2200 2463 7.160547 TCACATGACATGCACAATTCTAAAT 57.839 32.000 15.49 0.00 0.00 1.40
2220 2483 1.494721 AGAAAGGAACCCAAGCTCACA 59.505 47.619 0.00 0.00 0.00 3.58
2271 2744 1.346395 ACATCTAACGCCACCAGACAA 59.654 47.619 0.00 0.00 0.00 3.18
2273 2746 2.094762 AACATCTAACGCCACCAGAC 57.905 50.000 0.00 0.00 0.00 3.51
2284 2757 6.591935 ACAGGAAGACAGTTGAAACATCTAA 58.408 36.000 0.00 0.00 0.00 2.10
2301 2774 4.919754 GCAGAGCACAAATTTAACAGGAAG 59.080 41.667 0.00 0.00 0.00 3.46
2304 2777 3.236816 CGCAGAGCACAAATTTAACAGG 58.763 45.455 0.00 0.00 0.00 4.00
2305 2778 3.665409 CACGCAGAGCACAAATTTAACAG 59.335 43.478 0.00 0.00 0.00 3.16
2360 2835 5.464057 CAGAATCTGCAAAGCAAATTGACAA 59.536 36.000 0.00 0.00 38.41 3.18
2409 2887 6.095440 AGTGCAGTACAGAAAATTTCACAACT 59.905 34.615 8.55 5.02 0.00 3.16
2450 2930 4.552166 ACAAGTTGTGAGACATTTTCCG 57.448 40.909 7.96 0.00 0.00 4.30
2611 3091 1.586154 CGTCAAGGGATGGCCACAAC 61.586 60.000 8.16 2.10 35.15 3.32
2828 3308 5.110940 TCACGCAATAGGTTGTAAAAACC 57.889 39.130 0.00 0.00 40.58 3.27
2839 3319 6.808008 ATAAGGATTTCATCACGCAATAGG 57.192 37.500 0.00 0.00 0.00 2.57
2865 3345 5.509498 ACATATGGAGTACAACCAGCAATT 58.491 37.500 15.09 3.64 40.89 2.32
2889 3369 5.957771 TGGTCCAGTGAAGCTTAGATTAT 57.042 39.130 0.00 0.00 0.00 1.28
2890 3370 5.396772 CCATGGTCCAGTGAAGCTTAGATTA 60.397 44.000 2.57 0.00 0.00 1.75
2924 3404 5.679734 AAAGTTCTACACTTGAGTGCATG 57.320 39.130 10.90 0.00 45.77 4.06
2987 3476 6.640499 TCAAACACAACAAAGTTCAAGAGTTG 59.360 34.615 0.00 0.00 43.71 3.16
3007 3496 6.258160 CACGGAAATCCTACAATCATCAAAC 58.742 40.000 0.00 0.00 0.00 2.93
3171 3671 7.822161 TGAAACTAGTACGTATGGGCTAATA 57.178 36.000 0.00 0.00 0.00 0.98
3242 3758 2.672651 TGCGGCAACCACCAGATG 60.673 61.111 0.00 0.00 0.00 2.90
3263 3779 1.251251 CCCCCTCAAGCTTTGTCTTG 58.749 55.000 0.00 0.00 43.53 3.02
3317 3833 3.062466 GCCCCTTTCTTCGTGGCC 61.062 66.667 0.00 0.00 36.07 5.36
3448 3964 2.497675 GAGTACACCTTGCTCCTGATCA 59.502 50.000 0.00 0.00 30.89 2.92
3586 4104 4.543590 AGAACACTACCATCAAGGACTG 57.456 45.455 0.00 0.00 41.22 3.51
3625 4143 7.312899 CAATACAGTTGGAACCCAAATAAGAC 58.687 38.462 0.00 0.00 45.73 3.01
3668 4186 2.308866 AGAACATAAACCACCTCAGGGG 59.691 50.000 0.00 0.00 41.89 4.79
3683 4201 8.379902 GTTTCGTTTGTCAAAAATTGAGAACAT 58.620 29.630 0.00 0.00 41.85 2.71
3768 4385 7.734924 TCATCTGCCACAGCTTAAATATTAG 57.265 36.000 0.00 0.00 40.80 1.73
3771 4388 8.874744 AATATCATCTGCCACAGCTTAAATAT 57.125 30.769 0.00 0.00 40.80 1.28
3772 4389 8.570488 CAAATATCATCTGCCACAGCTTAAATA 58.430 33.333 0.00 0.00 40.80 1.40
3773 4390 7.286087 TCAAATATCATCTGCCACAGCTTAAAT 59.714 33.333 0.00 0.00 40.80 1.40
3827 4444 2.076100 CGCAGCCAATCAACAGAACTA 58.924 47.619 0.00 0.00 0.00 2.24
3829 4446 0.593128 ACGCAGCCAATCAACAGAAC 59.407 50.000 0.00 0.00 0.00 3.01
3854 4471 4.703575 TCCAAATGAAGCTCAGAAATGGAG 59.296 41.667 0.00 0.00 35.47 3.86
3871 4488 4.877378 AACACATGTTCAGCATCCAAAT 57.123 36.364 0.00 0.00 35.19 2.32
3901 4518 4.572389 CACACATCCCTCAGCAAATACTAC 59.428 45.833 0.00 0.00 0.00 2.73
3902 4519 4.769688 CACACATCCCTCAGCAAATACTA 58.230 43.478 0.00 0.00 0.00 1.82
3903 4520 3.614092 CACACATCCCTCAGCAAATACT 58.386 45.455 0.00 0.00 0.00 2.12
3904 4521 2.098117 GCACACATCCCTCAGCAAATAC 59.902 50.000 0.00 0.00 0.00 1.89
3907 4524 0.111061 AGCACACATCCCTCAGCAAA 59.889 50.000 0.00 0.00 0.00 3.68
3940 4581 8.203485 ACTAAACAAGAAAGCAATCATGGAAAA 58.797 29.630 0.00 0.00 0.00 2.29
3944 4585 7.115378 GTCAACTAAACAAGAAAGCAATCATGG 59.885 37.037 0.00 0.00 0.00 3.66
3988 4631 4.647424 TTGGTAAAGTGCAAAGGACTTG 57.353 40.909 4.68 0.00 33.85 3.16
4059 4702 0.320160 AACGTGCCGTCTAAGGTTCC 60.320 55.000 0.00 0.00 39.99 3.62
4192 4842 6.489603 AGGTATGGTCCAAAACAACATGATA 58.510 36.000 0.00 0.00 0.00 2.15
4193 4843 5.332743 AGGTATGGTCCAAAACAACATGAT 58.667 37.500 0.00 0.00 0.00 2.45
4194 4844 4.735369 AGGTATGGTCCAAAACAACATGA 58.265 39.130 0.00 0.00 0.00 3.07
4220 4870 3.591527 TGTTCCCTGGAATCAATACCTGT 59.408 43.478 1.26 0.00 36.45 4.00
4240 4890 9.427821 ACTTGTTCAGAACTATATAGATCCTGT 57.572 33.333 16.79 0.00 0.00 4.00
4332 4986 9.528018 GATGGGAGATAAATTATTTCGCAAAAA 57.472 29.630 21.00 4.75 42.55 1.94
4333 4987 8.912988 AGATGGGAGATAAATTATTTCGCAAAA 58.087 29.630 21.00 5.03 42.55 2.44
4334 4988 8.463930 AGATGGGAGATAAATTATTTCGCAAA 57.536 30.769 21.00 5.59 42.55 3.68
4337 4991 7.913674 AGAGATGGGAGATAAATTATTTCGC 57.086 36.000 11.83 11.83 34.25 4.70
4338 4992 9.077674 CGTAGAGATGGGAGATAAATTATTTCG 57.922 37.037 0.00 0.00 0.00 3.46
4339 4993 8.874816 GCGTAGAGATGGGAGATAAATTATTTC 58.125 37.037 0.00 0.00 0.00 2.17
4340 4994 8.375506 TGCGTAGAGATGGGAGATAAATTATTT 58.624 33.333 0.00 0.00 0.00 1.40
4341 4995 7.819900 GTGCGTAGAGATGGGAGATAAATTATT 59.180 37.037 0.00 0.00 0.00 1.40
4342 4996 7.324178 GTGCGTAGAGATGGGAGATAAATTAT 58.676 38.462 0.00 0.00 0.00 1.28
4343 4997 6.569801 CGTGCGTAGAGATGGGAGATAAATTA 60.570 42.308 0.00 0.00 0.00 1.40
4344 4998 5.542779 GTGCGTAGAGATGGGAGATAAATT 58.457 41.667 0.00 0.00 0.00 1.82
4345 4999 4.321304 CGTGCGTAGAGATGGGAGATAAAT 60.321 45.833 0.00 0.00 0.00 1.40
4346 5000 3.004419 CGTGCGTAGAGATGGGAGATAAA 59.996 47.826 0.00 0.00 0.00 1.40
4347 5001 2.552743 CGTGCGTAGAGATGGGAGATAA 59.447 50.000 0.00 0.00 0.00 1.75
4348 5002 2.152016 CGTGCGTAGAGATGGGAGATA 58.848 52.381 0.00 0.00 0.00 1.98
4349 5003 0.955178 CGTGCGTAGAGATGGGAGAT 59.045 55.000 0.00 0.00 0.00 2.75
4350 5004 0.107361 TCGTGCGTAGAGATGGGAGA 60.107 55.000 0.00 0.00 0.00 3.71
4351 5005 0.738975 TTCGTGCGTAGAGATGGGAG 59.261 55.000 0.00 0.00 0.00 4.30
4352 5006 0.454600 GTTCGTGCGTAGAGATGGGA 59.545 55.000 0.00 0.00 0.00 4.37
4353 5007 0.527817 GGTTCGTGCGTAGAGATGGG 60.528 60.000 0.00 0.00 0.00 4.00
4354 5008 0.172578 TGGTTCGTGCGTAGAGATGG 59.827 55.000 0.00 0.00 0.00 3.51
4355 5009 1.990799 TTGGTTCGTGCGTAGAGATG 58.009 50.000 0.00 0.00 0.00 2.90
4356 5010 2.736144 TTTGGTTCGTGCGTAGAGAT 57.264 45.000 0.00 0.00 0.00 2.75
4357 5011 2.736144 ATTTGGTTCGTGCGTAGAGA 57.264 45.000 0.00 0.00 0.00 3.10
4364 5018 5.581085 AGTCTGTTATCTATTTGGTTCGTGC 59.419 40.000 0.00 0.00 0.00 5.34
4365 5019 8.873215 ATAGTCTGTTATCTATTTGGTTCGTG 57.127 34.615 0.00 0.00 0.00 4.35
4391 5045 8.137437 CACATGTCAACTTCCTTAGAACAAAAT 58.863 33.333 0.00 0.00 0.00 1.82
4440 5098 7.212274 AGAATGTTAAGTTTGCTTGCATCTTT 58.788 30.769 14.68 5.52 36.22 2.52
4468 5126 1.456196 TTTTGGCGAATGAACGGGCA 61.456 50.000 0.00 0.00 34.16 5.36
4476 5134 5.883661 ACTCTTATGATGTTTTGGCGAATG 58.116 37.500 0.00 0.00 0.00 2.67
4477 5135 6.150976 TCAACTCTTATGATGTTTTGGCGAAT 59.849 34.615 0.00 0.00 0.00 3.34
4478 5136 5.471797 TCAACTCTTATGATGTTTTGGCGAA 59.528 36.000 0.00 0.00 0.00 4.70
4479 5137 5.000591 TCAACTCTTATGATGTTTTGGCGA 58.999 37.500 0.00 0.00 0.00 5.54
4480 5138 5.122239 TCTCAACTCTTATGATGTTTTGGCG 59.878 40.000 0.00 0.00 0.00 5.69
4481 5139 6.500684 TCTCAACTCTTATGATGTTTTGGC 57.499 37.500 0.00 0.00 0.00 4.52
4482 5140 7.874940 TGTTCTCAACTCTTATGATGTTTTGG 58.125 34.615 0.00 0.00 0.00 3.28
4483 5141 7.536622 GCTGTTCTCAACTCTTATGATGTTTTG 59.463 37.037 0.00 0.00 0.00 2.44
4484 5142 7.229306 TGCTGTTCTCAACTCTTATGATGTTTT 59.771 33.333 0.00 0.00 0.00 2.43
4485 5143 6.712095 TGCTGTTCTCAACTCTTATGATGTTT 59.288 34.615 0.00 0.00 0.00 2.83
4486 5144 6.148480 GTGCTGTTCTCAACTCTTATGATGTT 59.852 38.462 0.00 0.00 0.00 2.71
4487 5145 5.641209 GTGCTGTTCTCAACTCTTATGATGT 59.359 40.000 0.00 0.00 0.00 3.06
4488 5146 5.064452 GGTGCTGTTCTCAACTCTTATGATG 59.936 44.000 0.00 0.00 0.00 3.07
4489 5147 5.181748 GGTGCTGTTCTCAACTCTTATGAT 58.818 41.667 0.00 0.00 0.00 2.45
4490 5148 4.569943 GGTGCTGTTCTCAACTCTTATGA 58.430 43.478 0.00 0.00 0.00 2.15
4491 5149 3.369147 CGGTGCTGTTCTCAACTCTTATG 59.631 47.826 0.00 0.00 0.00 1.90
4492 5150 3.006967 ACGGTGCTGTTCTCAACTCTTAT 59.993 43.478 0.00 0.00 0.00 1.73
4493 5151 2.364324 ACGGTGCTGTTCTCAACTCTTA 59.636 45.455 0.00 0.00 0.00 2.10
4494 5152 1.139058 ACGGTGCTGTTCTCAACTCTT 59.861 47.619 0.00 0.00 0.00 2.85
4495 5153 0.753262 ACGGTGCTGTTCTCAACTCT 59.247 50.000 0.00 0.00 0.00 3.24
4496 5154 1.140816 GACGGTGCTGTTCTCAACTC 58.859 55.000 0.00 0.00 0.00 3.01
4497 5155 0.597637 CGACGGTGCTGTTCTCAACT 60.598 55.000 0.00 0.00 0.00 3.16
4498 5156 0.874607 ACGACGGTGCTGTTCTCAAC 60.875 55.000 0.00 0.00 0.00 3.18
4499 5157 0.596600 GACGACGGTGCTGTTCTCAA 60.597 55.000 0.00 0.00 0.00 3.02
4500 5158 1.007734 GACGACGGTGCTGTTCTCA 60.008 57.895 0.00 0.00 0.00 3.27
4501 5159 2.081212 CGACGACGGTGCTGTTCTC 61.081 63.158 0.00 0.00 35.72 2.87
4502 5160 2.050351 CGACGACGGTGCTGTTCT 60.050 61.111 0.00 0.00 35.72 3.01
4503 5161 2.354305 ACGACGACGGTGCTGTTC 60.354 61.111 12.58 0.00 44.46 3.18
4504 5162 2.354305 GACGACGACGGTGCTGTT 60.354 61.111 12.58 0.00 44.46 3.16
4505 5163 4.678269 CGACGACGACGGTGCTGT 62.678 66.667 12.58 0.00 44.46 4.40
4506 5164 4.678269 ACGACGACGACGGTGCTG 62.678 66.667 22.36 0.00 44.46 4.41
4507 5165 4.380628 GACGACGACGACGGTGCT 62.381 66.667 22.36 2.56 44.46 4.40
4508 5166 2.567470 TATGACGACGACGACGGTGC 62.567 60.000 22.36 12.25 44.46 5.01
4509 5167 0.585764 CTATGACGACGACGACGGTG 60.586 60.000 22.36 5.88 44.46 4.94
4510 5168 1.016130 ACTATGACGACGACGACGGT 61.016 55.000 22.36 8.44 44.46 4.83
4511 5169 0.585764 CACTATGACGACGACGACGG 60.586 60.000 22.36 7.84 44.46 4.79
4512 5170 1.186339 GCACTATGACGACGACGACG 61.186 60.000 17.60 17.60 42.66 5.12
4513 5171 0.179207 TGCACTATGACGACGACGAC 60.179 55.000 15.32 8.68 42.66 4.34
4514 5172 0.179207 GTGCACTATGACGACGACGA 60.179 55.000 15.32 0.00 42.66 4.20
4515 5173 1.453603 CGTGCACTATGACGACGACG 61.454 60.000 16.19 5.58 45.75 5.12
4516 5174 0.453950 ACGTGCACTATGACGACGAC 60.454 55.000 16.19 0.00 38.94 4.34
4517 5175 1.077915 TACGTGCACTATGACGACGA 58.922 50.000 16.19 0.00 38.94 4.20
4518 5176 2.034789 GATACGTGCACTATGACGACG 58.965 52.381 16.19 0.08 38.94 5.12
4519 5177 2.034789 CGATACGTGCACTATGACGAC 58.965 52.381 16.19 0.00 38.94 4.34
4520 5178 1.596220 GCGATACGTGCACTATGACGA 60.596 52.381 16.19 0.00 38.94 4.20
4521 5179 0.770590 GCGATACGTGCACTATGACG 59.229 55.000 16.19 14.22 41.41 4.35
4522 5180 1.835121 TGCGATACGTGCACTATGAC 58.165 50.000 16.19 6.72 37.44 3.06
4523 5181 2.793278 ATGCGATACGTGCACTATGA 57.207 45.000 16.19 0.00 46.57 2.15
4524 5182 4.965042 TTTATGCGATACGTGCACTATG 57.035 40.909 16.19 1.51 46.57 2.23
4525 5183 4.806775 TGTTTTATGCGATACGTGCACTAT 59.193 37.500 16.19 11.43 46.57 2.12
4526 5184 4.174762 TGTTTTATGCGATACGTGCACTA 58.825 39.130 16.19 6.87 46.57 2.74
4527 5185 2.997303 TGTTTTATGCGATACGTGCACT 59.003 40.909 16.19 4.64 46.57 4.40
4528 5186 3.377434 TGTTTTATGCGATACGTGCAC 57.623 42.857 6.82 6.82 46.57 4.57
4530 5188 4.666176 CAGAATGTTTTATGCGATACGTGC 59.334 41.667 0.00 0.00 0.00 5.34
4531 5189 5.006261 TCCAGAATGTTTTATGCGATACGTG 59.994 40.000 0.00 0.00 0.00 4.49
4532 5190 5.113383 TCCAGAATGTTTTATGCGATACGT 58.887 37.500 0.00 0.00 0.00 3.57
4533 5191 5.651172 TCCAGAATGTTTTATGCGATACG 57.349 39.130 0.00 0.00 0.00 3.06
4534 5192 8.745837 CAATTTCCAGAATGTTTTATGCGATAC 58.254 33.333 0.00 0.00 0.00 2.24
4535 5193 8.465999 ACAATTTCCAGAATGTTTTATGCGATA 58.534 29.630 0.00 0.00 0.00 2.92
4536 5194 7.276218 CACAATTTCCAGAATGTTTTATGCGAT 59.724 33.333 0.00 0.00 0.00 4.58
4537 5195 6.585702 CACAATTTCCAGAATGTTTTATGCGA 59.414 34.615 0.00 0.00 0.00 5.10
4538 5196 6.183360 CCACAATTTCCAGAATGTTTTATGCG 60.183 38.462 0.00 0.00 0.00 4.73
4539 5197 7.064060 CCACAATTTCCAGAATGTTTTATGC 57.936 36.000 0.00 0.00 0.00 3.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.