Multiple sequence alignment - TraesCS3D01G393900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G393900 chr3D 100.000 3643 0 0 1 3643 508611922 508615564 0.000000e+00 6728.0
1 TraesCS3D01G393900 chr3D 95.125 718 26 4 1979 2691 509077746 509078459 0.000000e+00 1123.0
2 TraesCS3D01G393900 chr3D 95.212 543 15 9 998 1529 509076944 509077486 0.000000e+00 848.0
3 TraesCS3D01G393900 chr3D 80.630 413 45 16 402 786 508765764 508766169 1.660000e-73 287.0
4 TraesCS3D01G393900 chr3D 88.205 195 11 8 1583 1771 509077480 509077668 4.730000e-54 222.0
5 TraesCS3D01G393900 chr3D 90.909 44 2 2 2886 2927 457029646 457029603 1.410000e-04 58.4
6 TraesCS3D01G393900 chr3A 89.933 1351 80 25 454 1769 646683674 646685003 0.000000e+00 1690.0
7 TraesCS3D01G393900 chr3A 96.366 688 21 2 2023 2707 646685055 646685741 0.000000e+00 1129.0
8 TraesCS3D01G393900 chr3A 86.628 344 36 5 21 355 646682940 646683282 4.440000e-99 372.0
9 TraesCS3D01G393900 chr3A 87.324 142 17 1 1767 1907 63385994 63385853 1.050000e-35 161.0
10 TraesCS3D01G393900 chr3B 93.795 1112 33 18 679 1769 671843734 671844830 0.000000e+00 1639.0
11 TraesCS3D01G393900 chr3B 95.685 672 26 1 2023 2691 671844891 671845562 0.000000e+00 1077.0
12 TraesCS3D01G393900 chr3B 93.598 656 36 5 21 673 671842914 671843566 0.000000e+00 974.0
13 TraesCS3D01G393900 chr3B 86.842 152 13 7 1766 1914 183601248 183601101 2.910000e-36 163.0
14 TraesCS3D01G393900 chr3B 86.667 150 14 6 1767 1914 482668453 482668598 1.050000e-35 161.0
15 TraesCS3D01G393900 chr2A 85.803 803 60 23 2868 3643 677078217 677077442 0.000000e+00 802.0
16 TraesCS3D01G393900 chr2A 85.272 808 76 25 2868 3643 677116641 677115845 0.000000e+00 793.0
17 TraesCS3D01G393900 chr2A 82.759 116 13 4 2734 2842 107183709 107183824 2.990000e-16 97.1
18 TraesCS3D01G393900 chr2A 97.143 35 1 0 2729 2763 369365240 369365274 3.930000e-05 60.2
19 TraesCS3D01G393900 chr6A 84.558 803 60 27 2870 3643 21958398 21959165 0.000000e+00 737.0
20 TraesCS3D01G393900 chr1A 90.653 567 32 11 3091 3643 536640985 536640426 0.000000e+00 734.0
21 TraesCS3D01G393900 chr1A 86.826 167 10 1 2868 3022 536641202 536641036 3.740000e-40 176.0
22 TraesCS3D01G393900 chr1A 79.675 123 13 6 2730 2842 516783949 516784069 1.080000e-10 78.7
23 TraesCS3D01G393900 chrUn 90.476 567 33 11 3091 3643 292872927 292873486 0.000000e+00 728.0
24 TraesCS3D01G393900 chr7B 90.106 566 36 7 3091 3643 658409094 658409652 0.000000e+00 717.0
25 TraesCS3D01G393900 chr7B 90.693 548 28 8 3111 3643 105512182 105512721 0.000000e+00 708.0
26 TraesCS3D01G393900 chr7B 89.399 566 40 8 3091 3643 175201867 175201309 0.000000e+00 695.0
27 TraesCS3D01G393900 chr7B 90.385 156 14 1 2868 3022 658408900 658409055 1.710000e-48 204.0
28 TraesCS3D01G393900 chr7B 86.395 147 18 2 1765 1910 647128856 647129001 3.770000e-35 159.0
29 TraesCS3D01G393900 chr4B 89.929 566 37 7 3091 3643 7758023 7757465 0.000000e+00 712.0
30 TraesCS3D01G393900 chr4B 88.516 566 45 7 3091 3643 585681689 585682247 0.000000e+00 667.0
31 TraesCS3D01G393900 chr4B 85.514 214 15 3 2868 3065 7758217 7758004 3.690000e-50 209.0
32 TraesCS3D01G393900 chr4B 88.276 145 13 4 1767 1910 654089180 654089039 1.740000e-38 171.0
33 TraesCS3D01G393900 chr4B 92.079 101 8 0 2884 2984 585681514 585681614 3.790000e-30 143.0
34 TraesCS3D01G393900 chr5B 76.340 541 113 12 2049 2583 706853158 706853689 3.580000e-70 276.0
35 TraesCS3D01G393900 chr5B 86.897 145 17 2 1767 1910 409866845 409866988 1.050000e-35 161.0
36 TraesCS3D01G393900 chr4A 75.769 553 117 12 2077 2622 608044258 608043716 2.790000e-66 263.0
37 TraesCS3D01G393900 chr4A 80.000 110 12 3 2743 2842 703760201 703760310 5.050000e-09 73.1
38 TraesCS3D01G393900 chr7D 86.441 177 11 4 2858 3022 98295980 98296155 8.040000e-42 182.0
39 TraesCS3D01G393900 chr7D 100.000 34 0 0 2878 2911 575899142 575899175 3.040000e-06 63.9
40 TraesCS3D01G393900 chr4D 85.714 154 19 3 1758 1910 58643748 58643899 3.770000e-35 159.0
41 TraesCS3D01G393900 chr2B 86.093 151 18 3 1762 1910 755622449 755622300 3.770000e-35 159.0
42 TraesCS3D01G393900 chr2B 89.655 58 6 0 2736 2793 609141888 609141945 1.400000e-09 75.0
43 TraesCS3D01G393900 chr2B 84.211 76 7 5 2734 2804 364920404 364920329 6.530000e-08 69.4
44 TraesCS3D01G393900 chr1B 86.093 151 16 5 1763 1910 183877195 183877343 1.350000e-34 158.0
45 TraesCS3D01G393900 chr6D 84.553 123 13 5 2724 2842 470359099 470359219 2.300000e-22 117.0
46 TraesCS3D01G393900 chr6D 94.872 39 0 2 2729 2765 141374928 141374966 3.930000e-05 60.2
47 TraesCS3D01G393900 chr5A 81.579 114 16 2 2734 2842 678207233 678207346 5.010000e-14 89.8
48 TraesCS3D01G393900 chr2D 93.333 60 4 0 2734 2793 476691094 476691035 5.010000e-14 89.8
49 TraesCS3D01G393900 chr2D 84.211 76 7 5 2734 2804 296720148 296720223 6.530000e-08 69.4
50 TraesCS3D01G393900 chr6B 80.870 115 13 6 2731 2839 24348160 24348271 8.380000e-12 82.4
51 TraesCS3D01G393900 chr6B 79.646 113 13 8 2736 2840 335698820 335698710 5.050000e-09 73.1
52 TraesCS3D01G393900 chr6B 92.157 51 3 1 2731 2781 24264994 24265043 1.810000e-08 71.3
53 TraesCS3D01G393900 chr5D 100.000 36 0 0 2878 2913 511610239 511610274 2.350000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G393900 chr3D 508611922 508615564 3642 False 6728.000000 6728 100.000000 1 3643 1 chr3D.!!$F1 3642
1 TraesCS3D01G393900 chr3D 509076944 509078459 1515 False 731.000000 1123 92.847333 998 2691 3 chr3D.!!$F3 1693
2 TraesCS3D01G393900 chr3A 646682940 646685741 2801 False 1063.666667 1690 90.975667 21 2707 3 chr3A.!!$F1 2686
3 TraesCS3D01G393900 chr3B 671842914 671845562 2648 False 1230.000000 1639 94.359333 21 2691 3 chr3B.!!$F2 2670
4 TraesCS3D01G393900 chr2A 677077442 677078217 775 True 802.000000 802 85.803000 2868 3643 1 chr2A.!!$R1 775
5 TraesCS3D01G393900 chr2A 677115845 677116641 796 True 793.000000 793 85.272000 2868 3643 1 chr2A.!!$R2 775
6 TraesCS3D01G393900 chr6A 21958398 21959165 767 False 737.000000 737 84.558000 2870 3643 1 chr6A.!!$F1 773
7 TraesCS3D01G393900 chr1A 536640426 536641202 776 True 455.000000 734 88.739500 2868 3643 2 chr1A.!!$R1 775
8 TraesCS3D01G393900 chrUn 292872927 292873486 559 False 728.000000 728 90.476000 3091 3643 1 chrUn.!!$F1 552
9 TraesCS3D01G393900 chr7B 105512182 105512721 539 False 708.000000 708 90.693000 3111 3643 1 chr7B.!!$F1 532
10 TraesCS3D01G393900 chr7B 175201309 175201867 558 True 695.000000 695 89.399000 3091 3643 1 chr7B.!!$R1 552
11 TraesCS3D01G393900 chr7B 658408900 658409652 752 False 460.500000 717 90.245500 2868 3643 2 chr7B.!!$F3 775
12 TraesCS3D01G393900 chr4B 7757465 7758217 752 True 460.500000 712 87.721500 2868 3643 2 chr4B.!!$R2 775
13 TraesCS3D01G393900 chr4B 585681514 585682247 733 False 405.000000 667 90.297500 2884 3643 2 chr4B.!!$F1 759
14 TraesCS3D01G393900 chr5B 706853158 706853689 531 False 276.000000 276 76.340000 2049 2583 1 chr5B.!!$F2 534
15 TraesCS3D01G393900 chr4A 608043716 608044258 542 True 263.000000 263 75.769000 2077 2622 1 chr4A.!!$R1 545

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
885 1408 0.109272 ATATACACGCGAGGCATCCG 60.109 55.0 15.93 7.53 0.0 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2749 3365 0.179161 GCGCGGATATAGCATCGACT 60.179 55.0 8.83 0.0 34.19 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 7.324935 TCATCTTTGCAAACAATAGCATCAAT 58.675 30.769 8.05 0.00 40.94 2.57
190 191 1.826385 CCCCATTTATCGGATCCTGC 58.174 55.000 10.75 0.00 0.00 4.85
200 201 1.372748 GGATCCTGCGAGCGATCAG 60.373 63.158 3.84 0.00 37.26 2.90
202 203 0.249238 GATCCTGCGAGCGATCAGTT 60.249 55.000 0.00 0.00 35.88 3.16
243 252 1.986905 CTATCGATGCGAGCGATGC 59.013 57.895 8.54 0.00 46.73 3.91
253 262 1.662760 GAGCGATGCGAGCATGCTA 60.663 57.895 22.74 5.47 39.23 3.49
265 274 3.448686 GAGCATGCTACTCGCTTAAAGA 58.551 45.455 22.74 0.00 40.11 2.52
273 282 6.143496 TGCTACTCGCTTAAAGAGATAATCG 58.857 40.000 12.84 0.00 38.97 3.34
274 283 6.017357 TGCTACTCGCTTAAAGAGATAATCGA 60.017 38.462 12.84 0.00 38.97 3.59
331 341 0.458669 ACGGAGGTTGTACATAGCGG 59.541 55.000 0.00 0.00 0.00 5.52
336 346 1.525442 GTTGTACATAGCGGCCCCT 59.475 57.895 0.00 0.00 0.00 4.79
367 377 1.416030 TGCGGCAGATAGGATTTAGCA 59.584 47.619 0.00 0.00 0.00 3.49
508 835 0.871722 TTGTTGCATCGGCTGTACAC 59.128 50.000 0.00 0.00 41.91 2.90
509 836 0.250081 TGTTGCATCGGCTGTACACA 60.250 50.000 0.00 0.00 41.91 3.72
510 837 1.086696 GTTGCATCGGCTGTACACAT 58.913 50.000 0.00 0.00 41.91 3.21
511 838 1.085893 TTGCATCGGCTGTACACATG 58.914 50.000 0.00 0.00 41.91 3.21
514 841 0.462581 CATCGGCTGTACACATGCCT 60.463 55.000 19.16 2.53 44.09 4.75
518 845 1.750399 GCTGTACACATGCCTGGGG 60.750 63.158 0.00 0.00 0.00 4.96
651 1007 5.168526 TGTGTAAAGAATGCGCATTATCC 57.831 39.130 33.98 21.95 0.00 2.59
675 1031 8.587608 TCCTTGCATGTCAAAAGAAAAATATCT 58.412 29.630 0.00 0.00 33.65 1.98
845 1366 0.958091 AGCATCTCGATCCTTCTCCG 59.042 55.000 0.00 0.00 0.00 4.63
861 1382 1.874019 CCGCCGTCTCACATTCTCG 60.874 63.158 0.00 0.00 0.00 4.04
885 1408 0.109272 ATATACACGCGAGGCATCCG 60.109 55.000 15.93 7.53 0.00 4.18
914 1437 2.133641 ACACCAACCAAGCCAAGCC 61.134 57.895 0.00 0.00 0.00 4.35
1143 1674 4.144703 GACCTCGCCGGGTTCCTC 62.145 72.222 2.18 0.00 40.06 3.71
1531 2089 3.004734 AGCTAAATCCATGCGTAATTGGC 59.995 43.478 0.00 0.00 32.80 4.52
1532 2090 3.243367 GCTAAATCCATGCGTAATTGGCA 60.243 43.478 8.23 8.23 45.71 4.92
1578 2141 8.039538 TGCTTTCAAAACAATCCATGCATATAA 58.960 29.630 0.00 0.00 0.00 0.98
1641 2207 4.523083 TCGTCCCCTGATTTTTCATTAGG 58.477 43.478 0.00 0.00 0.00 2.69
1719 2291 0.741326 GTGTAGAGCCGCATCTGAGA 59.259 55.000 0.00 0.00 0.00 3.27
1720 2292 1.339610 GTGTAGAGCCGCATCTGAGAT 59.660 52.381 0.00 0.00 0.00 2.75
1721 2293 2.034878 TGTAGAGCCGCATCTGAGATT 58.965 47.619 0.00 0.00 0.00 2.40
1722 2294 2.035193 TGTAGAGCCGCATCTGAGATTC 59.965 50.000 0.00 0.00 0.00 2.52
1723 2295 1.412079 AGAGCCGCATCTGAGATTCT 58.588 50.000 0.00 0.00 0.00 2.40
1724 2296 1.068895 AGAGCCGCATCTGAGATTCTG 59.931 52.381 0.00 0.00 0.00 3.02
1725 2297 1.068281 GAGCCGCATCTGAGATTCTGA 59.932 52.381 0.00 0.00 0.00 3.27
1726 2298 1.068895 AGCCGCATCTGAGATTCTGAG 59.931 52.381 0.00 0.00 0.00 3.35
1770 2342 6.261158 AGAAAAAGTTCAGCAAAGGTCTACTC 59.739 38.462 0.00 0.00 36.09 2.59
1771 2343 3.686916 AGTTCAGCAAAGGTCTACTCC 57.313 47.619 0.00 0.00 0.00 3.85
1772 2344 2.303311 AGTTCAGCAAAGGTCTACTCCC 59.697 50.000 0.00 0.00 0.00 4.30
1773 2345 2.303311 GTTCAGCAAAGGTCTACTCCCT 59.697 50.000 0.00 0.00 0.00 4.20
1774 2346 2.180276 TCAGCAAAGGTCTACTCCCTC 58.820 52.381 0.00 0.00 0.00 4.30
1775 2347 1.208293 CAGCAAAGGTCTACTCCCTCC 59.792 57.143 0.00 0.00 0.00 4.30
1776 2348 1.079658 AGCAAAGGTCTACTCCCTCCT 59.920 52.381 0.00 0.00 0.00 3.69
1777 2349 1.909986 GCAAAGGTCTACTCCCTCCTT 59.090 52.381 0.00 0.00 41.33 3.36
1778 2350 2.306219 GCAAAGGTCTACTCCCTCCTTT 59.694 50.000 0.00 0.00 46.84 3.11
1779 2351 3.620226 GCAAAGGTCTACTCCCTCCTTTC 60.620 52.174 5.26 0.00 44.97 2.62
1780 2352 3.841255 CAAAGGTCTACTCCCTCCTTTCT 59.159 47.826 5.26 0.00 44.97 2.52
1781 2353 4.969136 AAGGTCTACTCCCTCCTTTCTA 57.031 45.455 0.00 0.00 37.01 2.10
1782 2354 4.969136 AGGTCTACTCCCTCCTTTCTAA 57.031 45.455 0.00 0.00 0.00 2.10
1783 2355 5.286760 AGGTCTACTCCCTCCTTTCTAAA 57.713 43.478 0.00 0.00 0.00 1.85
1784 2356 5.855988 AGGTCTACTCCCTCCTTTCTAAAT 58.144 41.667 0.00 0.00 0.00 1.40
1785 2357 6.994582 AGGTCTACTCCCTCCTTTCTAAATA 58.005 40.000 0.00 0.00 0.00 1.40
1786 2358 7.606581 AGGTCTACTCCCTCCTTTCTAAATAT 58.393 38.462 0.00 0.00 0.00 1.28
1787 2359 8.744365 AGGTCTACTCCCTCCTTTCTAAATATA 58.256 37.037 0.00 0.00 0.00 0.86
1788 2360 9.377238 GGTCTACTCCCTCCTTTCTAAATATAA 57.623 37.037 0.00 0.00 0.00 0.98
1793 2365 9.508721 ACTCCCTCCTTTCTAAATATAAGTCTT 57.491 33.333 0.00 0.00 0.00 3.01
1825 2397 9.790389 AAAAATCACTATGAACTACGTAGAGAG 57.210 33.333 28.74 15.05 39.61 3.20
1826 2398 5.987777 TCACTATGAACTACGTAGAGAGC 57.012 43.478 28.74 14.05 39.67 4.09
1827 2399 5.425630 TCACTATGAACTACGTAGAGAGCA 58.574 41.667 28.74 18.58 39.67 4.26
1828 2400 5.878669 TCACTATGAACTACGTAGAGAGCAA 59.121 40.000 28.74 8.34 39.67 3.91
1829 2401 6.373495 TCACTATGAACTACGTAGAGAGCAAA 59.627 38.462 28.74 7.34 39.67 3.68
1830 2402 7.027760 CACTATGAACTACGTAGAGAGCAAAA 58.972 38.462 28.74 11.39 39.67 2.44
1831 2403 7.702772 CACTATGAACTACGTAGAGAGCAAAAT 59.297 37.037 28.74 11.92 39.67 1.82
1832 2404 8.900781 ACTATGAACTACGTAGAGAGCAAAATA 58.099 33.333 28.74 12.33 39.67 1.40
1833 2405 9.731819 CTATGAACTACGTAGAGAGCAAAATAA 57.268 33.333 28.74 1.82 39.67 1.40
1834 2406 8.635877 ATGAACTACGTAGAGAGCAAAATAAG 57.364 34.615 28.74 0.00 0.00 1.73
1835 2407 7.600065 TGAACTACGTAGAGAGCAAAATAAGT 58.400 34.615 28.74 0.39 0.00 2.24
1836 2408 7.541091 TGAACTACGTAGAGAGCAAAATAAGTG 59.459 37.037 28.74 0.00 0.00 3.16
1837 2409 7.154435 ACTACGTAGAGAGCAAAATAAGTGA 57.846 36.000 28.74 0.00 0.00 3.41
1838 2410 7.600065 ACTACGTAGAGAGCAAAATAAGTGAA 58.400 34.615 28.74 0.00 0.00 3.18
1839 2411 8.251721 ACTACGTAGAGAGCAAAATAAGTGAAT 58.748 33.333 28.74 0.00 0.00 2.57
1840 2412 7.527084 ACGTAGAGAGCAAAATAAGTGAATC 57.473 36.000 0.00 0.00 0.00 2.52
1841 2413 7.324178 ACGTAGAGAGCAAAATAAGTGAATCT 58.676 34.615 0.00 0.00 0.00 2.40
1842 2414 8.467598 ACGTAGAGAGCAAAATAAGTGAATCTA 58.532 33.333 0.00 0.00 0.00 1.98
1843 2415 8.747666 CGTAGAGAGCAAAATAAGTGAATCTAC 58.252 37.037 0.00 0.00 34.66 2.59
1844 2416 9.587772 GTAGAGAGCAAAATAAGTGAATCTACA 57.412 33.333 0.00 0.00 36.83 2.74
1845 2417 8.485976 AGAGAGCAAAATAAGTGAATCTACAC 57.514 34.615 0.00 0.00 40.60 2.90
1846 2418 7.550906 AGAGAGCAAAATAAGTGAATCTACACC 59.449 37.037 0.00 0.00 41.12 4.16
1847 2419 6.599638 AGAGCAAAATAAGTGAATCTACACCC 59.400 38.462 0.00 0.00 41.12 4.61
1848 2420 6.485171 AGCAAAATAAGTGAATCTACACCCT 58.515 36.000 0.00 0.00 41.12 4.34
1849 2421 7.630082 AGCAAAATAAGTGAATCTACACCCTA 58.370 34.615 0.00 0.00 41.12 3.53
1850 2422 8.107095 AGCAAAATAAGTGAATCTACACCCTAA 58.893 33.333 0.00 0.00 41.12 2.69
1851 2423 8.736244 GCAAAATAAGTGAATCTACACCCTAAA 58.264 33.333 0.00 0.00 41.12 1.85
1855 2427 6.759497 AAGTGAATCTACACCCTAAAATGC 57.241 37.500 0.00 0.00 41.12 3.56
1856 2428 5.815581 AGTGAATCTACACCCTAAAATGCA 58.184 37.500 0.00 0.00 41.12 3.96
1857 2429 6.426587 AGTGAATCTACACCCTAAAATGCAT 58.573 36.000 0.00 0.00 41.12 3.96
1858 2430 6.543831 AGTGAATCTACACCCTAAAATGCATC 59.456 38.462 0.00 0.00 41.12 3.91
1859 2431 6.543831 GTGAATCTACACCCTAAAATGCATCT 59.456 38.462 0.00 0.00 35.07 2.90
1860 2432 7.715249 GTGAATCTACACCCTAAAATGCATCTA 59.285 37.037 0.00 0.00 35.07 1.98
1861 2433 8.439971 TGAATCTACACCCTAAAATGCATCTAT 58.560 33.333 0.00 0.00 0.00 1.98
1862 2434 9.944376 GAATCTACACCCTAAAATGCATCTATA 57.056 33.333 0.00 0.00 0.00 1.31
1868 2440 9.672673 ACACCCTAAAATGCATCTATATACATC 57.327 33.333 0.00 0.00 0.00 3.06
1869 2441 9.113838 CACCCTAAAATGCATCTATATACATCC 57.886 37.037 0.00 0.00 0.00 3.51
1870 2442 7.987458 ACCCTAAAATGCATCTATATACATCCG 59.013 37.037 0.00 0.00 0.00 4.18
1871 2443 7.987458 CCCTAAAATGCATCTATATACATCCGT 59.013 37.037 0.00 0.00 0.00 4.69
1876 2448 8.877808 AATGCATCTATATACATCCGTATGTG 57.122 34.615 3.56 0.00 45.99 3.21
1877 2449 6.805713 TGCATCTATATACATCCGTATGTGG 58.194 40.000 3.56 0.00 45.99 4.17
1878 2450 6.379988 TGCATCTATATACATCCGTATGTGGT 59.620 38.462 3.56 0.00 45.99 4.16
1879 2451 7.093509 TGCATCTATATACATCCGTATGTGGTT 60.094 37.037 3.56 0.00 45.99 3.67
1880 2452 7.435488 GCATCTATATACATCCGTATGTGGTTC 59.565 40.741 3.56 0.00 45.99 3.62
1881 2453 7.080353 TCTATATACATCCGTATGTGGTTCG 57.920 40.000 3.56 0.00 45.99 3.95
1882 2454 5.717078 ATATACATCCGTATGTGGTTCGT 57.283 39.130 3.56 0.00 45.99 3.85
1883 2455 6.822667 ATATACATCCGTATGTGGTTCGTA 57.177 37.500 3.56 0.00 45.99 3.43
1884 2456 3.872511 ACATCCGTATGTGGTTCGTAA 57.127 42.857 0.00 0.00 44.79 3.18
1885 2457 4.395959 ACATCCGTATGTGGTTCGTAAT 57.604 40.909 0.00 0.00 44.79 1.89
1886 2458 4.116961 ACATCCGTATGTGGTTCGTAATG 58.883 43.478 0.00 0.00 44.79 1.90
1887 2459 3.167921 TCCGTATGTGGTTCGTAATGG 57.832 47.619 0.00 0.00 0.00 3.16
1888 2460 2.759535 TCCGTATGTGGTTCGTAATGGA 59.240 45.455 0.00 0.00 0.00 3.41
1889 2461 3.195182 TCCGTATGTGGTTCGTAATGGAA 59.805 43.478 0.00 0.00 0.00 3.53
1890 2462 4.124238 CCGTATGTGGTTCGTAATGGAAT 58.876 43.478 0.00 0.00 0.00 3.01
1891 2463 4.210537 CCGTATGTGGTTCGTAATGGAATC 59.789 45.833 0.00 0.00 0.00 2.52
1892 2464 4.210537 CGTATGTGGTTCGTAATGGAATCC 59.789 45.833 0.00 0.00 0.00 3.01
1893 2465 2.993937 TGTGGTTCGTAATGGAATCCC 58.006 47.619 0.00 0.00 0.00 3.85
1894 2466 2.574369 TGTGGTTCGTAATGGAATCCCT 59.426 45.455 0.00 0.00 0.00 4.20
1895 2467 3.775866 TGTGGTTCGTAATGGAATCCCTA 59.224 43.478 0.00 0.00 0.00 3.53
1896 2468 4.124970 GTGGTTCGTAATGGAATCCCTAC 58.875 47.826 0.00 0.00 0.00 3.18
1897 2469 3.775866 TGGTTCGTAATGGAATCCCTACA 59.224 43.478 0.00 0.00 0.00 2.74
1898 2470 4.225492 TGGTTCGTAATGGAATCCCTACAA 59.775 41.667 0.00 0.00 0.00 2.41
1899 2471 5.187687 GGTTCGTAATGGAATCCCTACAAA 58.812 41.667 0.00 0.00 0.00 2.83
1900 2472 5.296035 GGTTCGTAATGGAATCCCTACAAAG 59.704 44.000 0.00 0.00 0.00 2.77
1901 2473 5.943349 TCGTAATGGAATCCCTACAAAGA 57.057 39.130 0.00 0.00 0.00 2.52
1902 2474 6.494666 TCGTAATGGAATCCCTACAAAGAT 57.505 37.500 0.00 0.00 0.00 2.40
1903 2475 6.895782 TCGTAATGGAATCCCTACAAAGATT 58.104 36.000 0.00 0.00 35.43 2.40
1904 2476 7.343357 TCGTAATGGAATCCCTACAAAGATTT 58.657 34.615 0.00 0.00 32.91 2.17
1905 2477 8.487848 TCGTAATGGAATCCCTACAAAGATTTA 58.512 33.333 0.00 0.00 32.91 1.40
1906 2478 8.557029 CGTAATGGAATCCCTACAAAGATTTAC 58.443 37.037 0.00 0.00 32.91 2.01
1907 2479 9.628500 GTAATGGAATCCCTACAAAGATTTACT 57.372 33.333 0.00 0.00 32.91 2.24
1935 2507 8.934023 ATTTTATATTTAGAAATGCGGAGGGA 57.066 30.769 0.00 0.00 0.00 4.20
1936 2508 7.979444 TTTATATTTAGAAATGCGGAGGGAG 57.021 36.000 0.00 0.00 0.00 4.30
2001 2612 6.018016 ACAGTGTTATTTTTCTTTTGCATGCC 60.018 34.615 16.68 0.00 0.00 4.40
2014 2625 1.428370 GCATGCCGAACGAGTGCATA 61.428 55.000 6.36 0.00 43.49 3.14
2015 2626 1.220529 CATGCCGAACGAGTGCATAT 58.779 50.000 8.49 0.00 43.49 1.78
2016 2627 1.599071 CATGCCGAACGAGTGCATATT 59.401 47.619 8.49 0.00 43.49 1.28
2018 2629 2.894902 TGCCGAACGAGTGCATATTTA 58.105 42.857 0.00 0.00 0.00 1.40
2019 2630 3.462982 TGCCGAACGAGTGCATATTTAT 58.537 40.909 0.00 0.00 0.00 1.40
2020 2631 3.493129 TGCCGAACGAGTGCATATTTATC 59.507 43.478 0.00 0.00 0.00 1.75
2021 2632 3.493129 GCCGAACGAGTGCATATTTATCA 59.507 43.478 0.00 0.00 0.00 2.15
2433 3049 1.300931 GTCGTCAACAGCAGCCTCA 60.301 57.895 0.00 0.00 0.00 3.86
2587 3203 0.459237 CAGAAGCACTACCGCTCTGG 60.459 60.000 0.00 0.00 42.89 3.86
2708 3324 7.872113 AAGATAACCATCTAAAAAGGAGCTG 57.128 36.000 0.00 0.00 40.81 4.24
2709 3325 6.963322 AGATAACCATCTAAAAAGGAGCTGT 58.037 36.000 0.00 0.00 39.85 4.40
2710 3326 6.825721 AGATAACCATCTAAAAAGGAGCTGTG 59.174 38.462 0.00 0.00 39.85 3.66
2711 3327 3.690460 ACCATCTAAAAAGGAGCTGTGG 58.310 45.455 0.00 0.00 0.00 4.17
2712 3328 3.330701 ACCATCTAAAAAGGAGCTGTGGA 59.669 43.478 0.00 0.00 0.00 4.02
2713 3329 4.018050 ACCATCTAAAAAGGAGCTGTGGAT 60.018 41.667 0.00 0.00 0.00 3.41
2714 3330 4.952335 CCATCTAAAAAGGAGCTGTGGATT 59.048 41.667 0.00 0.00 0.00 3.01
2715 3331 5.420104 CCATCTAAAAAGGAGCTGTGGATTT 59.580 40.000 0.00 0.00 0.00 2.17
2716 3332 6.071165 CCATCTAAAAAGGAGCTGTGGATTTT 60.071 38.462 0.00 0.00 0.00 1.82
2717 3333 6.331369 TCTAAAAAGGAGCTGTGGATTTTG 57.669 37.500 0.00 0.00 0.00 2.44
2718 3334 6.068010 TCTAAAAAGGAGCTGTGGATTTTGA 58.932 36.000 0.00 0.00 0.00 2.69
2719 3335 5.813513 AAAAAGGAGCTGTGGATTTTGAT 57.186 34.783 0.00 0.00 0.00 2.57
2720 3336 5.813513 AAAAGGAGCTGTGGATTTTGATT 57.186 34.783 0.00 0.00 0.00 2.57
2721 3337 4.796038 AAGGAGCTGTGGATTTTGATTG 57.204 40.909 0.00 0.00 0.00 2.67
2722 3338 4.038271 AGGAGCTGTGGATTTTGATTGA 57.962 40.909 0.00 0.00 0.00 2.57
2723 3339 4.410099 AGGAGCTGTGGATTTTGATTGAA 58.590 39.130 0.00 0.00 0.00 2.69
2724 3340 5.021458 AGGAGCTGTGGATTTTGATTGAAT 58.979 37.500 0.00 0.00 0.00 2.57
2725 3341 5.105473 AGGAGCTGTGGATTTTGATTGAATG 60.105 40.000 0.00 0.00 0.00 2.67
2726 3342 5.337009 GGAGCTGTGGATTTTGATTGAATGT 60.337 40.000 0.00 0.00 0.00 2.71
2727 3343 6.127647 GGAGCTGTGGATTTTGATTGAATGTA 60.128 38.462 0.00 0.00 0.00 2.29
2728 3344 7.230849 AGCTGTGGATTTTGATTGAATGTAA 57.769 32.000 0.00 0.00 0.00 2.41
2729 3345 7.844009 AGCTGTGGATTTTGATTGAATGTAAT 58.156 30.769 0.00 0.00 0.00 1.89
2730 3346 8.970020 AGCTGTGGATTTTGATTGAATGTAATA 58.030 29.630 0.00 0.00 0.00 0.98
2731 3347 9.585099 GCTGTGGATTTTGATTGAATGTAATAA 57.415 29.630 0.00 0.00 0.00 1.40
2753 3369 3.840890 AGTCTTGCTAAGTCTCAGTCG 57.159 47.619 0.00 0.00 0.00 4.18
2754 3370 3.413327 AGTCTTGCTAAGTCTCAGTCGA 58.587 45.455 0.00 0.00 0.00 4.20
2755 3371 4.013728 AGTCTTGCTAAGTCTCAGTCGAT 58.986 43.478 0.00 0.00 0.00 3.59
2756 3372 4.101942 GTCTTGCTAAGTCTCAGTCGATG 58.898 47.826 0.00 0.00 0.00 3.84
2757 3373 2.568696 TGCTAAGTCTCAGTCGATGC 57.431 50.000 0.00 0.00 0.00 3.91
2758 3374 2.095461 TGCTAAGTCTCAGTCGATGCT 58.905 47.619 0.00 0.00 0.00 3.79
2759 3375 3.279434 TGCTAAGTCTCAGTCGATGCTA 58.721 45.455 0.00 0.00 0.00 3.49
2760 3376 3.885901 TGCTAAGTCTCAGTCGATGCTAT 59.114 43.478 0.00 0.00 0.00 2.97
2761 3377 5.063880 TGCTAAGTCTCAGTCGATGCTATA 58.936 41.667 0.00 0.00 0.00 1.31
2762 3378 5.707764 TGCTAAGTCTCAGTCGATGCTATAT 59.292 40.000 0.00 0.00 0.00 0.86
2763 3379 6.128145 TGCTAAGTCTCAGTCGATGCTATATC 60.128 42.308 0.00 0.00 0.00 1.63
2764 3380 5.637006 AAGTCTCAGTCGATGCTATATCC 57.363 43.478 0.00 0.00 0.00 2.59
2765 3381 3.687212 AGTCTCAGTCGATGCTATATCCG 59.313 47.826 0.00 0.00 0.00 4.18
2766 3382 2.420372 TCTCAGTCGATGCTATATCCGC 59.580 50.000 0.00 0.00 0.00 5.54
2767 3383 1.130561 TCAGTCGATGCTATATCCGCG 59.869 52.381 0.00 0.00 0.00 6.46
2768 3384 0.179161 AGTCGATGCTATATCCGCGC 60.179 55.000 0.00 0.00 0.00 6.86
2769 3385 0.456142 GTCGATGCTATATCCGCGCA 60.456 55.000 8.75 0.00 38.14 6.09
2770 3386 0.242555 TCGATGCTATATCCGCGCAA 59.757 50.000 8.75 0.00 37.20 4.85
2771 3387 1.135112 TCGATGCTATATCCGCGCAAT 60.135 47.619 8.75 2.34 37.20 3.56
2772 3388 1.256376 CGATGCTATATCCGCGCAATC 59.744 52.381 8.75 0.00 37.20 2.67
2773 3389 2.544685 GATGCTATATCCGCGCAATCT 58.455 47.619 8.75 0.00 37.20 2.40
2774 3390 2.455674 TGCTATATCCGCGCAATCTT 57.544 45.000 8.75 0.00 0.00 2.40
2775 3391 3.586100 TGCTATATCCGCGCAATCTTA 57.414 42.857 8.75 0.00 0.00 2.10
2776 3392 3.250744 TGCTATATCCGCGCAATCTTAC 58.749 45.455 8.75 0.00 0.00 2.34
2777 3393 3.250744 GCTATATCCGCGCAATCTTACA 58.749 45.455 8.75 0.00 0.00 2.41
2778 3394 3.865745 GCTATATCCGCGCAATCTTACAT 59.134 43.478 8.75 0.00 0.00 2.29
2779 3395 4.330074 GCTATATCCGCGCAATCTTACATT 59.670 41.667 8.75 0.00 0.00 2.71
2780 3396 4.668576 ATATCCGCGCAATCTTACATTG 57.331 40.909 8.75 0.00 0.00 2.82
2781 3397 2.017138 TCCGCGCAATCTTACATTGA 57.983 45.000 8.75 0.00 0.00 2.57
2782 3398 1.933181 TCCGCGCAATCTTACATTGAG 59.067 47.619 8.75 0.00 33.04 3.02
2783 3399 1.933181 CCGCGCAATCTTACATTGAGA 59.067 47.619 8.75 0.00 31.83 3.27
2784 3400 2.351418 CCGCGCAATCTTACATTGAGAA 59.649 45.455 8.75 0.00 31.83 2.87
2785 3401 3.002656 CCGCGCAATCTTACATTGAGAAT 59.997 43.478 8.75 0.00 31.83 2.40
2786 3402 4.206843 CGCGCAATCTTACATTGAGAATC 58.793 43.478 8.75 0.00 31.83 2.52
2787 3403 4.206843 GCGCAATCTTACATTGAGAATCG 58.793 43.478 0.30 0.00 38.61 3.34
2788 3404 4.260375 GCGCAATCTTACATTGAGAATCGT 60.260 41.667 0.30 0.00 38.61 3.73
2789 3405 5.193216 CGCAATCTTACATTGAGAATCGTG 58.807 41.667 0.00 0.00 38.61 4.35
2790 3406 4.966366 GCAATCTTACATTGAGAATCGTGC 59.034 41.667 0.00 0.00 38.61 5.34
2791 3407 5.447683 GCAATCTTACATTGAGAATCGTGCA 60.448 40.000 0.00 0.00 38.61 4.57
2792 3408 6.545508 CAATCTTACATTGAGAATCGTGCAA 58.454 36.000 0.00 0.00 38.61 4.08
2793 3409 6.932356 ATCTTACATTGAGAATCGTGCAAT 57.068 33.333 0.00 0.00 38.61 3.56
2794 3410 6.741992 TCTTACATTGAGAATCGTGCAATT 57.258 33.333 0.00 0.00 38.61 2.32
2795 3411 7.144722 TCTTACATTGAGAATCGTGCAATTT 57.855 32.000 0.00 0.00 38.61 1.82
2796 3412 7.592938 TCTTACATTGAGAATCGTGCAATTTT 58.407 30.769 0.00 0.00 38.61 1.82
2797 3413 8.081633 TCTTACATTGAGAATCGTGCAATTTTT 58.918 29.630 0.00 0.00 38.61 1.94
2798 3414 6.695292 ACATTGAGAATCGTGCAATTTTTC 57.305 33.333 0.00 0.00 38.61 2.29
2799 3415 6.449698 ACATTGAGAATCGTGCAATTTTTCT 58.550 32.000 0.00 0.00 38.61 2.52
2800 3416 6.925165 ACATTGAGAATCGTGCAATTTTTCTT 59.075 30.769 0.00 0.00 38.61 2.52
2801 3417 7.439056 ACATTGAGAATCGTGCAATTTTTCTTT 59.561 29.630 0.00 0.00 38.61 2.52
2802 3418 7.769272 TTGAGAATCGTGCAATTTTTCTTTT 57.231 28.000 0.00 0.00 38.61 2.27
2803 3419 7.393551 TGAGAATCGTGCAATTTTTCTTTTC 57.606 32.000 0.00 0.00 38.61 2.29
2804 3420 7.202526 TGAGAATCGTGCAATTTTTCTTTTCT 58.797 30.769 0.00 0.00 38.61 2.52
2805 3421 7.706179 TGAGAATCGTGCAATTTTTCTTTTCTT 59.294 29.630 0.00 0.00 38.61 2.52
2806 3422 8.424274 AGAATCGTGCAATTTTTCTTTTCTTT 57.576 26.923 0.00 0.00 0.00 2.52
2807 3423 8.882736 AGAATCGTGCAATTTTTCTTTTCTTTT 58.117 25.926 0.00 0.00 0.00 2.27
2808 3424 9.147364 GAATCGTGCAATTTTTCTTTTCTTTTC 57.853 29.630 0.00 0.00 0.00 2.29
2809 3425 7.826260 TCGTGCAATTTTTCTTTTCTTTTCT 57.174 28.000 0.00 0.00 0.00 2.52
2810 3426 7.894847 TCGTGCAATTTTTCTTTTCTTTTCTC 58.105 30.769 0.00 0.00 0.00 2.87
2811 3427 7.759433 TCGTGCAATTTTTCTTTTCTTTTCTCT 59.241 29.630 0.00 0.00 0.00 3.10
2812 3428 8.052490 CGTGCAATTTTTCTTTTCTTTTCTCTC 58.948 33.333 0.00 0.00 0.00 3.20
2813 3429 9.091784 GTGCAATTTTTCTTTTCTTTTCTCTCT 57.908 29.630 0.00 0.00 0.00 3.10
2814 3430 9.657419 TGCAATTTTTCTTTTCTTTTCTCTCTT 57.343 25.926 0.00 0.00 0.00 2.85
2815 3431 9.911980 GCAATTTTTCTTTTCTTTTCTCTCTTG 57.088 29.630 0.00 0.00 0.00 3.02
2816 3432 9.911980 CAATTTTTCTTTTCTTTTCTCTCTTGC 57.088 29.630 0.00 0.00 0.00 4.01
2817 3433 9.657419 AATTTTTCTTTTCTTTTCTCTCTTGCA 57.343 25.926 0.00 0.00 0.00 4.08
2818 3434 9.828039 ATTTTTCTTTTCTTTTCTCTCTTGCAT 57.172 25.926 0.00 0.00 0.00 3.96
2819 3435 8.638685 TTTTCTTTTCTTTTCTCTCTTGCATG 57.361 30.769 0.00 0.00 0.00 4.06
2820 3436 6.949352 TCTTTTCTTTTCTCTCTTGCATGT 57.051 33.333 0.00 0.00 0.00 3.21
2821 3437 7.338800 TCTTTTCTTTTCTCTCTTGCATGTT 57.661 32.000 0.00 0.00 0.00 2.71
2822 3438 8.450578 TCTTTTCTTTTCTCTCTTGCATGTTA 57.549 30.769 0.00 0.00 0.00 2.41
2823 3439 9.071276 TCTTTTCTTTTCTCTCTTGCATGTTAT 57.929 29.630 0.00 0.00 0.00 1.89
2827 3443 9.671279 TTCTTTTCTCTCTTGCATGTTATATCA 57.329 29.630 0.00 0.00 0.00 2.15
2828 3444 9.102757 TCTTTTCTCTCTTGCATGTTATATCAC 57.897 33.333 0.00 0.00 0.00 3.06
2829 3445 7.792374 TTTCTCTCTTGCATGTTATATCACC 57.208 36.000 0.00 0.00 0.00 4.02
2830 3446 6.737720 TCTCTCTTGCATGTTATATCACCT 57.262 37.500 0.00 0.00 0.00 4.00
2831 3447 6.519382 TCTCTCTTGCATGTTATATCACCTG 58.481 40.000 0.00 0.00 0.00 4.00
2832 3448 6.324770 TCTCTCTTGCATGTTATATCACCTGA 59.675 38.462 0.00 0.00 0.00 3.86
2833 3449 6.283694 TCTCTTGCATGTTATATCACCTGAC 58.716 40.000 0.00 0.00 0.00 3.51
2834 3450 6.098838 TCTCTTGCATGTTATATCACCTGACT 59.901 38.462 0.00 0.00 0.00 3.41
2835 3451 6.051074 TCTTGCATGTTATATCACCTGACTG 58.949 40.000 0.00 0.00 0.00 3.51
2836 3452 5.612725 TGCATGTTATATCACCTGACTGA 57.387 39.130 0.00 0.00 0.00 3.41
2837 3453 5.604565 TGCATGTTATATCACCTGACTGAG 58.395 41.667 0.00 0.00 0.00 3.35
2838 3454 5.363580 TGCATGTTATATCACCTGACTGAGA 59.636 40.000 0.00 0.00 0.00 3.27
2839 3455 5.694006 GCATGTTATATCACCTGACTGAGAC 59.306 44.000 0.00 0.00 0.00 3.36
2840 3456 6.462207 GCATGTTATATCACCTGACTGAGACT 60.462 42.308 0.00 0.00 0.00 3.24
2841 3457 7.495901 CATGTTATATCACCTGACTGAGACTT 58.504 38.462 0.00 0.00 0.00 3.01
2842 3458 8.633561 CATGTTATATCACCTGACTGAGACTTA 58.366 37.037 0.00 0.00 0.00 2.24
2843 3459 8.226819 TGTTATATCACCTGACTGAGACTTAG 57.773 38.462 0.00 0.00 0.00 2.18
2844 3460 7.834681 TGTTATATCACCTGACTGAGACTTAGT 59.165 37.037 0.00 0.00 0.00 2.24
2845 3461 6.952773 ATATCACCTGACTGAGACTTAGTC 57.047 41.667 18.12 18.12 43.73 2.59
2847 3463 3.821600 TCACCTGACTGAGACTTAGTCAC 59.178 47.826 22.44 9.00 46.92 3.67
2848 3464 3.570125 CACCTGACTGAGACTTAGTCACA 59.430 47.826 22.44 13.30 46.92 3.58
2849 3465 3.570550 ACCTGACTGAGACTTAGTCACAC 59.429 47.826 22.44 4.53 46.92 3.82
2850 3466 3.057174 CCTGACTGAGACTTAGTCACACC 60.057 52.174 22.44 7.61 46.92 4.16
2851 3467 2.891580 TGACTGAGACTTAGTCACACCC 59.108 50.000 22.44 7.29 46.92 4.61
2852 3468 2.891580 GACTGAGACTTAGTCACACCCA 59.108 50.000 19.60 3.73 43.12 4.51
2853 3469 3.511477 ACTGAGACTTAGTCACACCCAT 58.489 45.455 15.23 0.00 34.60 4.00
2854 3470 3.259374 ACTGAGACTTAGTCACACCCATG 59.741 47.826 15.23 5.00 34.60 3.66
2855 3471 3.239449 TGAGACTTAGTCACACCCATGT 58.761 45.455 15.23 0.00 40.80 3.21
2856 3472 4.412843 TGAGACTTAGTCACACCCATGTA 58.587 43.478 15.23 0.00 36.72 2.29
2857 3473 4.836175 TGAGACTTAGTCACACCCATGTAA 59.164 41.667 15.23 0.00 36.72 2.41
2858 3474 5.483937 TGAGACTTAGTCACACCCATGTAAT 59.516 40.000 15.23 0.00 36.72 1.89
2859 3475 6.666113 TGAGACTTAGTCACACCCATGTAATA 59.334 38.462 15.23 0.00 36.72 0.98
2860 3476 7.179516 TGAGACTTAGTCACACCCATGTAATAA 59.820 37.037 15.23 0.00 36.72 1.40
2861 3477 7.913789 AGACTTAGTCACACCCATGTAATAAA 58.086 34.615 15.23 0.00 36.72 1.40
2862 3478 8.548877 AGACTTAGTCACACCCATGTAATAAAT 58.451 33.333 15.23 0.00 36.72 1.40
2863 3479 9.174166 GACTTAGTCACACCCATGTAATAAATT 57.826 33.333 7.59 0.00 36.72 1.82
2872 3488 7.996644 ACACCCATGTAATAAATTAGATCCGTT 59.003 33.333 0.00 0.00 37.26 4.44
2915 3531 4.634883 ACTTCGCTAAGTCTCAGTCGAATA 59.365 41.667 0.00 0.00 42.42 1.75
2922 3538 6.416455 GCTAAGTCTCAGTCGAATAACATCAG 59.584 42.308 0.00 0.00 0.00 2.90
3045 3751 1.807142 TCGTGTGTGTGTTTTTGCAGA 59.193 42.857 0.00 0.00 0.00 4.26
3046 3752 2.226674 TCGTGTGTGTGTTTTTGCAGAA 59.773 40.909 0.00 0.00 0.00 3.02
3047 3753 2.983136 CGTGTGTGTGTTTTTGCAGAAA 59.017 40.909 0.00 0.00 0.00 2.52
3048 3754 3.181545 CGTGTGTGTGTTTTTGCAGAAAC 60.182 43.478 22.37 22.37 39.41 2.78
3049 3755 3.738282 GTGTGTGTGTTTTTGCAGAAACA 59.262 39.130 26.53 26.53 44.69 2.83
3086 3792 9.342308 ACAGATTTGTCTAAAAGAATTGTCTCA 57.658 29.630 0.00 0.00 28.03 3.27
3136 3842 2.693069 GAATGGCCAGACAGATATCCG 58.307 52.381 13.05 0.00 0.00 4.18
3165 3871 0.539438 AAGGAAAATGCGCTCCCACA 60.539 50.000 9.73 0.00 31.50 4.17
3193 3899 7.518188 ACCAAGAAAGAAAGAGAAATGGTCTA 58.482 34.615 0.00 0.00 36.41 2.59
3220 3926 6.799512 ACCGTATTAGTATTACACACCAGTC 58.200 40.000 0.00 0.00 0.00 3.51
3310 4026 9.420966 GCTAAAATAAAATAAAATGCGAAAGGC 57.579 29.630 0.00 0.00 43.96 4.35
3321 4037 0.523335 GCGAAAGGCGTAAATGCTGG 60.523 55.000 0.00 0.00 43.41 4.85
3322 4038 0.098728 CGAAAGGCGTAAATGCTGGG 59.901 55.000 0.00 0.00 34.64 4.45
3323 4039 1.173913 GAAAGGCGTAAATGCTGGGT 58.826 50.000 0.00 0.00 34.52 4.51
3324 4040 1.544246 GAAAGGCGTAAATGCTGGGTT 59.456 47.619 0.00 0.00 34.52 4.11
3325 4041 1.627864 AAGGCGTAAATGCTGGGTTT 58.372 45.000 0.00 0.00 34.52 3.27
3354 4071 4.480115 TCTCTAGGGAACAGTCAAAGTGA 58.520 43.478 0.00 0.00 0.00 3.41
3460 4183 8.934023 TCTTTAATAAAAATCAGTCCCACACT 57.066 30.769 0.00 0.00 34.67 3.55
3505 4228 2.608623 CCCCCTCCAACAGAACAAAAT 58.391 47.619 0.00 0.00 0.00 1.82
3580 4303 0.723414 CAGTTGCATGCCTAGTGTCG 59.277 55.000 16.68 0.00 0.00 4.35
3626 4351 0.890996 CAGCACCCCCTCTGACAAAC 60.891 60.000 0.00 0.00 32.26 2.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.063180 TGCTATTGTTTGCAAAGATGAGG 57.937 39.130 13.26 3.75 38.21 3.86
1 2 6.327154 TGATGCTATTGTTTGCAAAGATGAG 58.673 36.000 13.26 12.17 42.74 2.90
2 3 6.270156 TGATGCTATTGTTTGCAAAGATGA 57.730 33.333 13.26 0.00 42.74 2.92
3 4 6.954616 TTGATGCTATTGTTTGCAAAGATG 57.045 33.333 13.26 6.17 42.74 2.90
4 5 9.826574 AATATTGATGCTATTGTTTGCAAAGAT 57.173 25.926 13.26 12.14 42.74 2.40
27 28 6.041523 GCCTCAGGGGTTTGCAATAATTAATA 59.958 38.462 0.00 0.00 37.43 0.98
171 172 1.826385 GCAGGATCCGATAAATGGGG 58.174 55.000 5.98 0.00 0.00 4.96
200 201 1.646189 CTTCGCTAGGCCAGAAGAAC 58.354 55.000 19.14 0.00 42.75 3.01
202 203 1.517832 GCTTCGCTAGGCCAGAAGA 59.482 57.895 24.68 9.88 42.75 2.87
232 233 4.878682 ATGCTCGCATCGCTCGCA 62.879 61.111 0.00 2.36 36.29 5.10
253 262 6.196724 CGTTTCGATTATCTCTTTAAGCGAGT 59.803 38.462 4.99 0.00 46.60 4.18
265 274 6.205101 AGTACAACTCCGTTTCGATTATCT 57.795 37.500 0.00 0.00 0.00 1.98
273 282 6.423001 ACACTGATTTAGTACAACTCCGTTTC 59.577 38.462 0.00 0.00 37.60 2.78
274 283 6.285990 ACACTGATTTAGTACAACTCCGTTT 58.714 36.000 0.00 0.00 37.60 3.60
336 346 0.250252 TCTGCCGCAACTGATTGTCA 60.250 50.000 0.00 0.00 38.17 3.58
367 377 8.313292 TGCAGATTATTCAAGGCATTTTACTTT 58.687 29.630 0.00 0.00 0.00 2.66
486 813 1.535462 GTACAGCCGATGCAACAACTT 59.465 47.619 0.00 0.00 41.13 2.66
651 1007 8.166706 GCAGATATTTTTCTTTTGACATGCAAG 58.833 33.333 0.00 0.00 37.87 4.01
697 1215 9.181061 CAATATCCATGGAAATCTATATGCACA 57.819 33.333 20.67 0.00 0.00 4.57
845 1366 0.454600 TACCGAGAATGTGAGACGGC 59.545 55.000 0.00 0.00 46.18 5.68
861 1382 3.770263 TGCCTCGCGTGTATATATACC 57.230 47.619 18.20 9.89 32.33 2.73
885 1408 3.910490 TTGGTGTGCTTTGCGGGC 61.910 61.111 0.00 0.00 0.00 6.13
895 1418 1.067916 GCTTGGCTTGGTTGGTGTG 59.932 57.895 0.00 0.00 0.00 3.82
896 1419 2.133641 GGCTTGGCTTGGTTGGTGT 61.134 57.895 0.00 0.00 0.00 4.16
1531 2089 4.352039 CAATAGCGGCTACGGATAGTATG 58.648 47.826 12.67 0.00 41.36 2.39
1532 2090 3.181489 GCAATAGCGGCTACGGATAGTAT 60.181 47.826 12.67 0.00 41.36 2.12
1641 2207 4.911514 TGTAAGACAAGTTTGGCCTTTC 57.088 40.909 3.32 0.00 36.67 2.62
1721 2293 2.890311 GGCTATCTTCTGCTAGCTCAGA 59.110 50.000 17.23 14.03 40.17 3.27
1722 2294 2.029110 GGGCTATCTTCTGCTAGCTCAG 60.029 54.545 17.23 5.97 40.49 3.35
1723 2295 1.967066 GGGCTATCTTCTGCTAGCTCA 59.033 52.381 17.23 0.00 40.49 4.26
1724 2296 2.247358 AGGGCTATCTTCTGCTAGCTC 58.753 52.381 17.23 0.00 40.98 4.09
1725 2297 2.397044 AGGGCTATCTTCTGCTAGCT 57.603 50.000 17.23 0.00 40.17 3.32
1726 2298 3.426615 TCTAGGGCTATCTTCTGCTAGC 58.573 50.000 8.10 8.10 39.69 3.42
1799 2371 9.790389 CTCTCTACGTAGTTCATAGTGATTTTT 57.210 33.333 21.53 0.00 37.78 1.94
1800 2372 7.916450 GCTCTCTACGTAGTTCATAGTGATTTT 59.084 37.037 21.53 0.00 37.78 1.82
1801 2373 7.067129 TGCTCTCTACGTAGTTCATAGTGATTT 59.933 37.037 21.53 0.00 37.78 2.17
1802 2374 6.542735 TGCTCTCTACGTAGTTCATAGTGATT 59.457 38.462 21.53 0.00 37.78 2.57
1803 2375 6.056236 TGCTCTCTACGTAGTTCATAGTGAT 58.944 40.000 21.53 0.00 37.78 3.06
1804 2376 5.425630 TGCTCTCTACGTAGTTCATAGTGA 58.574 41.667 21.53 3.45 37.78 3.41
1805 2377 5.736486 TGCTCTCTACGTAGTTCATAGTG 57.264 43.478 21.53 12.75 37.78 2.74
1806 2378 6.754702 TTTGCTCTCTACGTAGTTCATAGT 57.245 37.500 21.53 0.00 37.78 2.12
1807 2379 9.731819 TTATTTTGCTCTCTACGTAGTTCATAG 57.268 33.333 21.53 11.60 37.78 2.23
1808 2380 9.731819 CTTATTTTGCTCTCTACGTAGTTCATA 57.268 33.333 21.53 1.65 37.78 2.15
1809 2381 8.251721 ACTTATTTTGCTCTCTACGTAGTTCAT 58.748 33.333 21.53 7.09 37.78 2.57
1810 2382 7.541091 CACTTATTTTGCTCTCTACGTAGTTCA 59.459 37.037 21.53 12.21 37.78 3.18
1811 2383 7.754027 TCACTTATTTTGCTCTCTACGTAGTTC 59.246 37.037 21.53 10.02 37.78 3.01
1812 2384 7.600065 TCACTTATTTTGCTCTCTACGTAGTT 58.400 34.615 21.53 1.06 37.78 2.24
1814 2386 8.635877 ATTCACTTATTTTGCTCTCTACGTAG 57.364 34.615 16.73 16.73 0.00 3.51
1815 2387 8.467598 AGATTCACTTATTTTGCTCTCTACGTA 58.532 33.333 0.00 0.00 0.00 3.57
1816 2388 7.324178 AGATTCACTTATTTTGCTCTCTACGT 58.676 34.615 0.00 0.00 0.00 3.57
1817 2389 7.763172 AGATTCACTTATTTTGCTCTCTACG 57.237 36.000 0.00 0.00 0.00 3.51
1818 2390 9.587772 TGTAGATTCACTTATTTTGCTCTCTAC 57.412 33.333 0.00 0.00 34.60 2.59
1819 2391 9.587772 GTGTAGATTCACTTATTTTGCTCTCTA 57.412 33.333 0.00 0.00 35.68 2.43
1820 2392 7.550906 GGTGTAGATTCACTTATTTTGCTCTCT 59.449 37.037 0.00 0.00 38.28 3.10
1821 2393 7.201652 GGGTGTAGATTCACTTATTTTGCTCTC 60.202 40.741 0.00 0.00 38.28 3.20
1822 2394 6.599638 GGGTGTAGATTCACTTATTTTGCTCT 59.400 38.462 0.00 0.00 38.28 4.09
1823 2395 6.599638 AGGGTGTAGATTCACTTATTTTGCTC 59.400 38.462 0.00 0.00 38.28 4.26
1824 2396 6.485171 AGGGTGTAGATTCACTTATTTTGCT 58.515 36.000 0.00 0.00 38.28 3.91
1825 2397 6.759497 AGGGTGTAGATTCACTTATTTTGC 57.241 37.500 0.00 0.00 38.28 3.68
1829 2401 8.903820 GCATTTTAGGGTGTAGATTCACTTATT 58.096 33.333 0.00 0.00 38.28 1.40
1830 2402 8.052748 TGCATTTTAGGGTGTAGATTCACTTAT 58.947 33.333 0.00 0.00 38.28 1.73
1831 2403 7.398829 TGCATTTTAGGGTGTAGATTCACTTA 58.601 34.615 0.00 0.00 38.28 2.24
1832 2404 6.245408 TGCATTTTAGGGTGTAGATTCACTT 58.755 36.000 0.00 0.00 38.28 3.16
1833 2405 5.815581 TGCATTTTAGGGTGTAGATTCACT 58.184 37.500 0.00 0.00 38.28 3.41
1834 2406 6.543831 AGATGCATTTTAGGGTGTAGATTCAC 59.456 38.462 0.00 0.00 37.57 3.18
1835 2407 6.662755 AGATGCATTTTAGGGTGTAGATTCA 58.337 36.000 0.00 0.00 0.00 2.57
1836 2408 8.854614 ATAGATGCATTTTAGGGTGTAGATTC 57.145 34.615 0.00 0.00 0.00 2.52
1842 2414 9.672673 GATGTATATAGATGCATTTTAGGGTGT 57.327 33.333 0.00 0.00 38.38 4.16
1843 2415 9.113838 GGATGTATATAGATGCATTTTAGGGTG 57.886 37.037 0.00 0.00 38.38 4.61
1844 2416 7.987458 CGGATGTATATAGATGCATTTTAGGGT 59.013 37.037 11.19 0.00 38.38 4.34
1845 2417 7.987458 ACGGATGTATATAGATGCATTTTAGGG 59.013 37.037 11.19 0.00 38.38 3.53
1846 2418 8.948631 ACGGATGTATATAGATGCATTTTAGG 57.051 34.615 11.19 0.00 38.38 2.69
1849 2421 9.890629 ACATACGGATGTATATAGATGCATTTT 57.109 29.630 12.79 0.00 44.77 1.82
1850 2422 9.317936 CACATACGGATGTATATAGATGCATTT 57.682 33.333 14.23 0.00 44.82 2.32
1851 2423 7.928167 CCACATACGGATGTATATAGATGCATT 59.072 37.037 14.23 1.23 44.82 3.56
1852 2424 7.069950 ACCACATACGGATGTATATAGATGCAT 59.930 37.037 14.23 0.00 44.82 3.96
1853 2425 6.379988 ACCACATACGGATGTATATAGATGCA 59.620 38.462 14.23 0.00 44.82 3.96
1854 2426 6.806751 ACCACATACGGATGTATATAGATGC 58.193 40.000 14.23 0.00 44.82 3.91
1855 2427 7.644157 CGAACCACATACGGATGTATATAGATG 59.356 40.741 14.23 0.00 44.82 2.90
1856 2428 7.338703 ACGAACCACATACGGATGTATATAGAT 59.661 37.037 14.23 0.00 44.82 1.98
1857 2429 6.656270 ACGAACCACATACGGATGTATATAGA 59.344 38.462 14.23 0.00 44.82 1.98
1858 2430 6.849502 ACGAACCACATACGGATGTATATAG 58.150 40.000 14.23 7.97 44.82 1.31
1859 2431 6.822667 ACGAACCACATACGGATGTATATA 57.177 37.500 14.23 0.00 44.82 0.86
1860 2432 5.717078 ACGAACCACATACGGATGTATAT 57.283 39.130 14.23 1.68 44.82 0.86
1861 2433 6.631971 TTACGAACCACATACGGATGTATA 57.368 37.500 14.23 0.00 44.82 1.47
1862 2434 5.518848 TTACGAACCACATACGGATGTAT 57.481 39.130 14.23 1.38 44.82 2.29
1863 2435 4.979943 TTACGAACCACATACGGATGTA 57.020 40.909 14.23 0.00 44.82 2.29
1865 2437 3.493129 CCATTACGAACCACATACGGATG 59.507 47.826 5.94 5.94 39.16 3.51
1866 2438 3.385433 TCCATTACGAACCACATACGGAT 59.615 43.478 0.00 0.00 0.00 4.18
1867 2439 2.759535 TCCATTACGAACCACATACGGA 59.240 45.455 0.00 0.00 0.00 4.69
1868 2440 3.167921 TCCATTACGAACCACATACGG 57.832 47.619 0.00 0.00 0.00 4.02
1869 2441 4.210537 GGATTCCATTACGAACCACATACG 59.789 45.833 0.00 0.00 0.00 3.06
1870 2442 4.514066 GGGATTCCATTACGAACCACATAC 59.486 45.833 4.80 0.00 0.00 2.39
1871 2443 4.410883 AGGGATTCCATTACGAACCACATA 59.589 41.667 4.80 0.00 34.83 2.29
1872 2444 3.202151 AGGGATTCCATTACGAACCACAT 59.798 43.478 4.80 0.00 34.83 3.21
1873 2445 2.574369 AGGGATTCCATTACGAACCACA 59.426 45.455 4.80 0.00 34.83 4.17
1874 2446 3.277142 AGGGATTCCATTACGAACCAC 57.723 47.619 4.80 0.00 34.83 4.16
1875 2447 3.775866 TGTAGGGATTCCATTACGAACCA 59.224 43.478 4.80 0.00 34.83 3.67
1876 2448 4.411256 TGTAGGGATTCCATTACGAACC 57.589 45.455 4.80 0.00 34.83 3.62
1877 2449 6.110707 TCTTTGTAGGGATTCCATTACGAAC 58.889 40.000 4.80 0.00 34.83 3.95
1878 2450 6.302535 TCTTTGTAGGGATTCCATTACGAA 57.697 37.500 4.80 10.90 34.83 3.85
1879 2451 5.943349 TCTTTGTAGGGATTCCATTACGA 57.057 39.130 4.80 4.05 34.83 3.43
1880 2452 7.568199 AAATCTTTGTAGGGATTCCATTACG 57.432 36.000 4.80 0.00 31.87 3.18
1881 2453 9.628500 AGTAAATCTTTGTAGGGATTCCATTAC 57.372 33.333 4.80 7.26 31.87 1.89
1910 2482 8.934023 TCCCTCCGCATTTCTAAATATAAAAT 57.066 30.769 0.00 0.00 0.00 1.82
1911 2483 7.996644 ACTCCCTCCGCATTTCTAAATATAAAA 59.003 33.333 0.00 0.00 0.00 1.52
1912 2484 7.514721 ACTCCCTCCGCATTTCTAAATATAAA 58.485 34.615 0.00 0.00 0.00 1.40
1913 2485 7.074653 ACTCCCTCCGCATTTCTAAATATAA 57.925 36.000 0.00 0.00 0.00 0.98
1914 2486 6.681729 ACTCCCTCCGCATTTCTAAATATA 57.318 37.500 0.00 0.00 0.00 0.86
1915 2487 5.568620 ACTCCCTCCGCATTTCTAAATAT 57.431 39.130 0.00 0.00 0.00 1.28
1916 2488 5.364446 TGTACTCCCTCCGCATTTCTAAATA 59.636 40.000 0.00 0.00 0.00 1.40
1917 2489 3.933861 ACTCCCTCCGCATTTCTAAAT 57.066 42.857 0.00 0.00 0.00 1.40
1918 2490 3.516300 TGTACTCCCTCCGCATTTCTAAA 59.484 43.478 0.00 0.00 0.00 1.85
1919 2491 3.101437 TGTACTCCCTCCGCATTTCTAA 58.899 45.455 0.00 0.00 0.00 2.10
1920 2492 2.742348 TGTACTCCCTCCGCATTTCTA 58.258 47.619 0.00 0.00 0.00 2.10
1921 2493 1.568504 TGTACTCCCTCCGCATTTCT 58.431 50.000 0.00 0.00 0.00 2.52
1922 2494 2.622064 ATGTACTCCCTCCGCATTTC 57.378 50.000 0.00 0.00 0.00 2.17
1923 2495 3.366052 AAATGTACTCCCTCCGCATTT 57.634 42.857 0.00 0.00 35.66 2.32
1924 2496 3.366052 AAAATGTACTCCCTCCGCATT 57.634 42.857 0.00 0.00 0.00 3.56
1925 2497 3.366052 AAAAATGTACTCCCTCCGCAT 57.634 42.857 0.00 0.00 0.00 4.73
1926 2498 2.871096 AAAAATGTACTCCCTCCGCA 57.129 45.000 0.00 0.00 0.00 5.69
1975 2547 7.170658 GGCATGCAAAAGAAAAATAACACTGTA 59.829 33.333 21.36 0.00 0.00 2.74
1977 2549 6.365050 GGCATGCAAAAGAAAAATAACACTG 58.635 36.000 21.36 0.00 0.00 3.66
2001 2612 9.811655 ATAAATTGATAAATATGCACTCGTTCG 57.188 29.630 0.00 0.00 0.00 3.95
2014 2625 9.880157 GGCATATCCAAGCATAAATTGATAAAT 57.120 29.630 0.00 0.00 34.01 1.40
2015 2626 8.868103 TGGCATATCCAAGCATAAATTGATAAA 58.132 29.630 0.00 0.00 43.21 1.40
2016 2627 8.419922 TGGCATATCCAAGCATAAATTGATAA 57.580 30.769 0.00 0.00 43.21 1.75
2018 2629 6.921486 TGGCATATCCAAGCATAAATTGAT 57.079 33.333 0.00 0.00 43.21 2.57
2499 3115 3.430862 GCCGTCAATGGCGAGCAA 61.431 61.111 9.51 0.00 46.75 3.91
2587 3203 2.914289 CATCCAGGGTCCTCCAGC 59.086 66.667 0.00 0.00 38.24 4.85
2701 3317 4.038271 TCAATCAAAATCCACAGCTCCT 57.962 40.909 0.00 0.00 0.00 3.69
2727 3343 8.132362 CGACTGAGACTTAGCAAGACTATTATT 58.868 37.037 0.00 0.00 33.75 1.40
2728 3344 7.499563 TCGACTGAGACTTAGCAAGACTATTAT 59.500 37.037 0.00 0.00 33.75 1.28
2729 3345 6.822170 TCGACTGAGACTTAGCAAGACTATTA 59.178 38.462 0.00 0.00 33.75 0.98
2730 3346 5.648526 TCGACTGAGACTTAGCAAGACTATT 59.351 40.000 0.00 0.00 33.75 1.73
2731 3347 5.186942 TCGACTGAGACTTAGCAAGACTAT 58.813 41.667 0.00 0.00 33.75 2.12
2732 3348 4.576879 TCGACTGAGACTTAGCAAGACTA 58.423 43.478 0.00 0.00 33.75 2.59
2733 3349 3.413327 TCGACTGAGACTTAGCAAGACT 58.587 45.455 0.00 2.60 36.25 3.24
2734 3350 3.833545 TCGACTGAGACTTAGCAAGAC 57.166 47.619 0.00 0.00 0.00 3.01
2735 3351 3.428180 GCATCGACTGAGACTTAGCAAGA 60.428 47.826 0.00 0.00 0.00 3.02
2736 3352 2.857152 GCATCGACTGAGACTTAGCAAG 59.143 50.000 0.00 0.00 0.00 4.01
2737 3353 2.493675 AGCATCGACTGAGACTTAGCAA 59.506 45.455 0.00 0.00 0.00 3.91
2738 3354 2.095461 AGCATCGACTGAGACTTAGCA 58.905 47.619 0.00 0.00 0.00 3.49
2739 3355 2.861462 AGCATCGACTGAGACTTAGC 57.139 50.000 0.00 0.00 0.00 3.09
2740 3356 6.456315 CGGATATAGCATCGACTGAGACTTAG 60.456 46.154 0.00 0.00 0.00 2.18
2741 3357 5.351740 CGGATATAGCATCGACTGAGACTTA 59.648 44.000 0.00 0.00 0.00 2.24
2742 3358 4.155099 CGGATATAGCATCGACTGAGACTT 59.845 45.833 0.00 0.00 0.00 3.01
2743 3359 3.687212 CGGATATAGCATCGACTGAGACT 59.313 47.826 0.00 0.00 0.00 3.24
2744 3360 3.729462 GCGGATATAGCATCGACTGAGAC 60.729 52.174 0.00 0.00 34.19 3.36
2745 3361 2.420372 GCGGATATAGCATCGACTGAGA 59.580 50.000 0.00 0.00 34.19 3.27
2746 3362 2.789436 CGCGGATATAGCATCGACTGAG 60.789 54.545 0.00 0.00 34.19 3.35
2747 3363 1.130561 CGCGGATATAGCATCGACTGA 59.869 52.381 0.00 0.00 34.19 3.41
2748 3364 1.539341 CGCGGATATAGCATCGACTG 58.461 55.000 0.00 0.00 34.19 3.51
2749 3365 0.179161 GCGCGGATATAGCATCGACT 60.179 55.000 8.83 0.00 34.19 4.18
2750 3366 0.456142 TGCGCGGATATAGCATCGAC 60.456 55.000 8.83 0.00 35.81 4.20
2751 3367 0.242555 TTGCGCGGATATAGCATCGA 59.757 50.000 8.83 0.00 40.83 3.59
2752 3368 1.256376 GATTGCGCGGATATAGCATCG 59.744 52.381 8.83 0.00 40.83 3.84
2753 3369 2.544685 AGATTGCGCGGATATAGCATC 58.455 47.619 8.83 3.63 40.83 3.91
2754 3370 2.680312 AGATTGCGCGGATATAGCAT 57.320 45.000 8.83 0.00 40.83 3.79
2755 3371 2.455674 AAGATTGCGCGGATATAGCA 57.544 45.000 8.83 0.00 39.33 3.49
2756 3372 3.250744 TGTAAGATTGCGCGGATATAGC 58.749 45.455 8.83 0.00 0.00 2.97
2757 3373 5.576774 TCAATGTAAGATTGCGCGGATATAG 59.423 40.000 8.83 0.00 0.00 1.31
2758 3374 5.474825 TCAATGTAAGATTGCGCGGATATA 58.525 37.500 8.83 0.00 0.00 0.86
2759 3375 4.314961 TCAATGTAAGATTGCGCGGATAT 58.685 39.130 8.83 1.06 0.00 1.63
2760 3376 3.723260 TCAATGTAAGATTGCGCGGATA 58.277 40.909 8.83 0.00 0.00 2.59
2761 3377 2.545526 CTCAATGTAAGATTGCGCGGAT 59.454 45.455 8.83 0.00 0.00 4.18
2762 3378 1.933181 CTCAATGTAAGATTGCGCGGA 59.067 47.619 8.83 0.00 0.00 5.54
2763 3379 1.933181 TCTCAATGTAAGATTGCGCGG 59.067 47.619 8.83 0.00 0.00 6.46
2764 3380 3.656651 TTCTCAATGTAAGATTGCGCG 57.343 42.857 0.00 0.00 0.00 6.86
2765 3381 4.206843 CGATTCTCAATGTAAGATTGCGC 58.793 43.478 0.00 0.00 0.00 6.09
2766 3382 5.193216 CACGATTCTCAATGTAAGATTGCG 58.807 41.667 0.00 0.00 0.00 4.85
2767 3383 4.966366 GCACGATTCTCAATGTAAGATTGC 59.034 41.667 0.00 0.00 0.00 3.56
2768 3384 6.110543 TGCACGATTCTCAATGTAAGATTG 57.889 37.500 0.00 0.00 0.00 2.67
2769 3385 6.741992 TTGCACGATTCTCAATGTAAGATT 57.258 33.333 0.00 0.00 0.00 2.40
2770 3386 6.932356 ATTGCACGATTCTCAATGTAAGAT 57.068 33.333 0.00 0.00 0.00 2.40
2771 3387 6.741992 AATTGCACGATTCTCAATGTAAGA 57.258 33.333 0.00 0.00 31.53 2.10
2772 3388 7.801547 AAAATTGCACGATTCTCAATGTAAG 57.198 32.000 0.00 0.00 31.53 2.34
2773 3389 8.081633 AGAAAAATTGCACGATTCTCAATGTAA 58.918 29.630 0.00 0.00 31.53 2.41
2774 3390 7.592938 AGAAAAATTGCACGATTCTCAATGTA 58.407 30.769 0.00 0.00 31.53 2.29
2775 3391 6.449698 AGAAAAATTGCACGATTCTCAATGT 58.550 32.000 0.00 0.00 31.53 2.71
2776 3392 6.939551 AGAAAAATTGCACGATTCTCAATG 57.060 33.333 0.00 0.00 31.53 2.82
2777 3393 7.951530 AAAGAAAAATTGCACGATTCTCAAT 57.048 28.000 0.00 0.00 30.43 2.57
2778 3394 7.706179 AGAAAAGAAAAATTGCACGATTCTCAA 59.294 29.630 0.00 0.00 30.43 3.02
2779 3395 7.202526 AGAAAAGAAAAATTGCACGATTCTCA 58.797 30.769 0.00 0.00 30.43 3.27
2780 3396 7.629027 AGAAAAGAAAAATTGCACGATTCTC 57.371 32.000 0.00 0.00 30.43 2.87
2781 3397 8.424274 AAAGAAAAGAAAAATTGCACGATTCT 57.576 26.923 0.00 0.00 31.98 2.40
2782 3398 9.147364 GAAAAGAAAAGAAAAATTGCACGATTC 57.853 29.630 0.00 0.00 0.00 2.52
2783 3399 8.882736 AGAAAAGAAAAGAAAAATTGCACGATT 58.117 25.926 0.00 0.00 0.00 3.34
2784 3400 8.424274 AGAAAAGAAAAGAAAAATTGCACGAT 57.576 26.923 0.00 0.00 0.00 3.73
2785 3401 7.759433 AGAGAAAAGAAAAGAAAAATTGCACGA 59.241 29.630 0.00 0.00 0.00 4.35
2786 3402 7.898946 AGAGAAAAGAAAAGAAAAATTGCACG 58.101 30.769 0.00 0.00 0.00 5.34
2787 3403 9.091784 AGAGAGAAAAGAAAAGAAAAATTGCAC 57.908 29.630 0.00 0.00 0.00 4.57
2788 3404 9.657419 AAGAGAGAAAAGAAAAGAAAAATTGCA 57.343 25.926 0.00 0.00 0.00 4.08
2789 3405 9.911980 CAAGAGAGAAAAGAAAAGAAAAATTGC 57.088 29.630 0.00 0.00 0.00 3.56
2790 3406 9.911980 GCAAGAGAGAAAAGAAAAGAAAAATTG 57.088 29.630 0.00 0.00 0.00 2.32
2791 3407 9.657419 TGCAAGAGAGAAAAGAAAAGAAAAATT 57.343 25.926 0.00 0.00 0.00 1.82
2792 3408 9.828039 ATGCAAGAGAGAAAAGAAAAGAAAAAT 57.172 25.926 0.00 0.00 0.00 1.82
2793 3409 9.090692 CATGCAAGAGAGAAAAGAAAAGAAAAA 57.909 29.630 0.00 0.00 0.00 1.94
2794 3410 8.253113 ACATGCAAGAGAGAAAAGAAAAGAAAA 58.747 29.630 0.00 0.00 0.00 2.29
2795 3411 7.775120 ACATGCAAGAGAGAAAAGAAAAGAAA 58.225 30.769 0.00 0.00 0.00 2.52
2796 3412 7.338800 ACATGCAAGAGAGAAAAGAAAAGAA 57.661 32.000 0.00 0.00 0.00 2.52
2797 3413 6.949352 ACATGCAAGAGAGAAAAGAAAAGA 57.051 33.333 0.00 0.00 0.00 2.52
2801 3417 9.671279 TGATATAACATGCAAGAGAGAAAAGAA 57.329 29.630 0.00 0.00 0.00 2.52
2802 3418 9.102757 GTGATATAACATGCAAGAGAGAAAAGA 57.897 33.333 0.00 0.00 0.00 2.52
2803 3419 8.341173 GGTGATATAACATGCAAGAGAGAAAAG 58.659 37.037 0.00 0.00 0.00 2.27
2804 3420 8.049117 AGGTGATATAACATGCAAGAGAGAAAA 58.951 33.333 0.00 0.00 0.00 2.29
2805 3421 7.496920 CAGGTGATATAACATGCAAGAGAGAAA 59.503 37.037 0.00 0.00 0.00 2.52
2806 3422 6.988580 CAGGTGATATAACATGCAAGAGAGAA 59.011 38.462 0.00 0.00 0.00 2.87
2807 3423 6.324770 TCAGGTGATATAACATGCAAGAGAGA 59.675 38.462 0.00 0.00 32.02 3.10
2808 3424 6.423302 GTCAGGTGATATAACATGCAAGAGAG 59.577 42.308 0.00 0.00 32.02 3.20
2809 3425 6.098838 AGTCAGGTGATATAACATGCAAGAGA 59.901 38.462 0.00 0.00 32.02 3.10
2810 3426 6.202379 CAGTCAGGTGATATAACATGCAAGAG 59.798 42.308 0.00 0.00 32.02 2.85
2811 3427 6.051074 CAGTCAGGTGATATAACATGCAAGA 58.949 40.000 0.00 0.00 32.02 3.02
2812 3428 6.051074 TCAGTCAGGTGATATAACATGCAAG 58.949 40.000 0.00 0.00 32.02 4.01
2813 3429 5.988287 TCAGTCAGGTGATATAACATGCAA 58.012 37.500 0.00 0.00 32.02 4.08
2814 3430 5.363580 TCTCAGTCAGGTGATATAACATGCA 59.636 40.000 0.00 0.00 32.02 3.96
2815 3431 5.694006 GTCTCAGTCAGGTGATATAACATGC 59.306 44.000 0.00 0.00 32.02 4.06
2816 3432 7.048629 AGTCTCAGTCAGGTGATATAACATG 57.951 40.000 0.00 0.00 33.22 3.21
2817 3433 7.667575 AAGTCTCAGTCAGGTGATATAACAT 57.332 36.000 0.00 0.00 0.00 2.71
2818 3434 7.834681 ACTAAGTCTCAGTCAGGTGATATAACA 59.165 37.037 0.00 0.00 0.00 2.41
2819 3435 8.228035 ACTAAGTCTCAGTCAGGTGATATAAC 57.772 38.462 0.00 0.00 0.00 1.89
2820 3436 8.053355 TGACTAAGTCTCAGTCAGGTGATATAA 58.947 37.037 1.29 0.00 45.68 0.98
2821 3437 7.574607 TGACTAAGTCTCAGTCAGGTGATATA 58.425 38.462 1.29 0.00 45.68 0.86
2822 3438 6.427441 TGACTAAGTCTCAGTCAGGTGATAT 58.573 40.000 1.29 0.00 45.68 1.63
2823 3439 5.816682 TGACTAAGTCTCAGTCAGGTGATA 58.183 41.667 1.29 0.00 45.68 2.15
2824 3440 4.667573 TGACTAAGTCTCAGTCAGGTGAT 58.332 43.478 1.29 0.00 45.68 3.06
2825 3441 4.100279 TGACTAAGTCTCAGTCAGGTGA 57.900 45.455 1.29 0.00 45.68 4.02
2831 3447 2.891580 TGGGTGTGACTAAGTCTCAGTC 59.108 50.000 0.00 0.00 42.31 3.51
2832 3448 2.958818 TGGGTGTGACTAAGTCTCAGT 58.041 47.619 0.00 0.00 36.86 3.41
2833 3449 3.259374 ACATGGGTGTGACTAAGTCTCAG 59.741 47.826 0.00 0.00 36.86 3.35
2834 3450 3.239449 ACATGGGTGTGACTAAGTCTCA 58.761 45.455 0.00 0.00 37.14 3.27
2835 3451 3.963428 ACATGGGTGTGACTAAGTCTC 57.037 47.619 0.00 0.00 37.14 3.36
2836 3452 7.490657 TTATTACATGGGTGTGACTAAGTCT 57.509 36.000 0.00 0.00 39.39 3.24
2837 3453 8.732746 ATTTATTACATGGGTGTGACTAAGTC 57.267 34.615 0.00 0.00 39.39 3.01
2842 3458 9.561069 GATCTAATTTATTACATGGGTGTGACT 57.439 33.333 0.00 0.00 39.39 3.41
2843 3459 8.784043 GGATCTAATTTATTACATGGGTGTGAC 58.216 37.037 0.00 0.00 39.39 3.67
2844 3460 7.659799 CGGATCTAATTTATTACATGGGTGTGA 59.340 37.037 0.00 0.00 39.39 3.58
2845 3461 7.444183 ACGGATCTAATTTATTACATGGGTGTG 59.556 37.037 0.00 0.00 39.39 3.82
2846 3462 7.514721 ACGGATCTAATTTATTACATGGGTGT 58.485 34.615 0.00 0.00 42.39 4.16
2847 3463 7.979444 ACGGATCTAATTTATTACATGGGTG 57.021 36.000 0.00 0.00 0.00 4.61
2848 3464 8.990163 AAACGGATCTAATTTATTACATGGGT 57.010 30.769 0.00 0.00 0.00 4.51
2858 3474 9.745880 GACTGAGATGTAAACGGATCTAATTTA 57.254 33.333 0.00 0.00 0.00 1.40
2859 3475 7.435488 CGACTGAGATGTAAACGGATCTAATTT 59.565 37.037 0.00 0.00 0.00 1.82
2860 3476 6.918569 CGACTGAGATGTAAACGGATCTAATT 59.081 38.462 0.00 0.00 0.00 1.40
2861 3477 6.262496 TCGACTGAGATGTAAACGGATCTAAT 59.738 38.462 0.00 0.00 0.00 1.73
2862 3478 5.587443 TCGACTGAGATGTAAACGGATCTAA 59.413 40.000 0.00 0.00 0.00 2.10
2863 3479 5.007430 GTCGACTGAGATGTAAACGGATCTA 59.993 44.000 8.70 0.00 0.00 1.98
2864 3480 3.945921 TCGACTGAGATGTAAACGGATCT 59.054 43.478 0.00 0.00 0.00 2.75
2865 3481 4.036352 GTCGACTGAGATGTAAACGGATC 58.964 47.826 8.70 0.00 0.00 3.36
2866 3482 3.695060 AGTCGACTGAGATGTAAACGGAT 59.305 43.478 19.30 0.00 0.00 4.18
2915 3531 1.159285 CGACCACATGTGCTGATGTT 58.841 50.000 20.81 0.00 34.18 2.71
2922 3538 3.434319 CAGGCCGACCACATGTGC 61.434 66.667 20.81 8.47 39.06 4.57
3060 3766 9.342308 TGAGACAATTCTTTTAGACAAATCTGT 57.658 29.630 0.00 0.00 32.50 3.41
3108 3814 2.554032 CTGTCTGGCCATTCGTTTCTTT 59.446 45.455 5.51 0.00 0.00 2.52
3136 3842 3.317150 CGCATTTTCCTTTTCCAACCTC 58.683 45.455 0.00 0.00 0.00 3.85
3165 3871 6.779539 ACCATTTCTCTTTCTTTCTTGGTCAT 59.220 34.615 0.00 0.00 29.19 3.06
3193 3899 7.557719 ACTGGTGTGTAATACTAATACGGTAGT 59.442 37.037 0.00 0.00 37.98 2.73
3220 3926 5.147162 GGATTTCTTAGCTTTTGTGTGTCG 58.853 41.667 0.00 0.00 0.00 4.35
3325 4041 6.494666 TGACTGTTCCCTAGAGAAGAAAAA 57.505 37.500 0.00 0.00 0.00 1.94
3330 4047 5.011125 TCACTTTGACTGTTCCCTAGAGAAG 59.989 44.000 0.00 0.00 0.00 2.85
3333 4050 4.873746 TCACTTTGACTGTTCCCTAGAG 57.126 45.455 0.00 0.00 0.00 2.43
3493 4216 5.505654 CGCAACTGGACTATTTTGTTCTGTT 60.506 40.000 0.00 0.00 37.86 3.16
3505 4228 4.077184 CCGGCCGCAACTGGACTA 62.077 66.667 22.85 0.00 38.48 2.59
3580 4303 2.753966 CGGGCTAGTGTGCATGTGC 61.754 63.158 0.00 0.00 42.50 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.