Multiple sequence alignment - TraesCS3D01G393300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G393300 chr3D 100.000 7103 0 0 1 7103 508389451 508396553 0.000000e+00 13117.0
1 TraesCS3D01G393300 chr3D 82.692 156 23 4 5697 5850 26207288 26207441 1.240000e-27 135.0
2 TraesCS3D01G393300 chr3D 93.750 80 1 2 2000 2075 508391284 508391363 4.500000e-22 117.0
3 TraesCS3D01G393300 chr3D 93.750 80 1 2 1834 1913 508391450 508391525 4.500000e-22 117.0
4 TraesCS3D01G393300 chr3A 90.065 2446 172 37 3251 5662 646139919 646142327 0.000000e+00 3105.0
5 TraesCS3D01G393300 chr3A 91.569 854 42 15 576 1419 646136324 646137157 0.000000e+00 1151.0
6 TraesCS3D01G393300 chr3A 87.910 579 64 6 1 576 646134234 646134809 0.000000e+00 676.0
7 TraesCS3D01G393300 chr3A 92.290 428 17 8 1704 2128 646137446 646137860 1.710000e-165 593.0
8 TraesCS3D01G393300 chr3A 90.646 449 28 8 2304 2745 646137915 646138356 1.030000e-162 584.0
9 TraesCS3D01G393300 chr3A 93.722 223 7 4 1503 1721 646137213 646137432 1.910000e-85 327.0
10 TraesCS3D01G393300 chr3A 88.485 165 7 5 1918 2078 646137575 646137731 9.410000e-44 189.0
11 TraesCS3D01G393300 chr3A 88.667 150 5 6 1833 1978 646137656 646137797 9.470000e-39 172.0
12 TraesCS3D01G393300 chr3A 77.483 302 50 9 6172 6459 497665457 497665160 1.590000e-36 165.0
13 TraesCS3D01G393300 chr3A 92.941 85 5 1 2211 2294 555387810 555387894 9.680000e-24 122.0
14 TraesCS3D01G393300 chr3A 96.970 66 2 0 2143 2208 646137842 646137907 2.090000e-20 111.0
15 TraesCS3D01G393300 chr3A 91.139 79 3 2 1833 1911 646137733 646137807 3.500000e-18 104.0
16 TraesCS3D01G393300 chr3B 91.835 1482 86 7 5632 7103 671263532 671264988 0.000000e+00 2034.0
17 TraesCS3D01G393300 chr3B 91.059 1454 68 20 576 1997 671131470 671132893 0.000000e+00 1908.0
18 TraesCS3D01G393300 chr3B 92.384 1208 70 12 4659 5847 671152644 671153848 0.000000e+00 1701.0
19 TraesCS3D01G393300 chr3B 95.139 576 25 3 1 576 671023770 671024342 0.000000e+00 905.0
20 TraesCS3D01G393300 chr3B 88.854 646 56 12 4021 4661 671151941 671152575 0.000000e+00 780.0
21 TraesCS3D01G393300 chr3B 89.713 593 46 10 5850 6430 671153880 671154469 0.000000e+00 743.0
22 TraesCS3D01G393300 chr3B 92.615 501 26 7 3217 3709 671135696 671136193 0.000000e+00 710.0
23 TraesCS3D01G393300 chr3B 90.526 380 32 3 6628 7007 671231820 671232195 3.830000e-137 499.0
24 TraesCS3D01G393300 chr3B 92.378 328 22 2 2757 3082 671134842 671135168 1.400000e-126 464.0
25 TraesCS3D01G393300 chr3B 87.719 399 37 8 2340 2734 81818788 81819178 8.400000e-124 455.0
26 TraesCS3D01G393300 chr3B 92.558 215 7 4 1918 2128 671132733 671132942 4.160000e-77 300.0
27 TraesCS3D01G393300 chr3B 93.137 204 5 3 2296 2496 671132993 671133190 2.510000e-74 291.0
28 TraesCS3D01G393300 chr3B 92.216 167 12 1 3706 3872 671151714 671151879 1.190000e-57 235.0
29 TraesCS3D01G393300 chr3B 84.103 195 18 12 6633 6818 202318531 202318721 7.320000e-40 176.0
30 TraesCS3D01G393300 chr3B 93.182 88 6 0 2210 2297 799854329 799854242 5.780000e-26 130.0
31 TraesCS3D01G393300 chr3B 92.958 71 1 1 2143 2209 671132924 671132994 4.530000e-17 100.0
32 TraesCS3D01G393300 chr2D 89.639 415 29 7 2332 2738 27615592 27616000 3.800000e-142 516.0
33 TraesCS3D01G393300 chr2D 93.182 88 6 0 2210 2297 112520077 112519990 5.780000e-26 130.0
34 TraesCS3D01G393300 chr4A 88.783 419 36 6 2324 2738 358853472 358853883 2.960000e-138 503.0
35 TraesCS3D01G393300 chr4A 87.990 383 40 3 2343 2724 493829439 493829062 1.410000e-121 448.0
36 TraesCS3D01G393300 chr4A 93.827 81 5 0 2211 2291 539994089 539994169 9.680000e-24 122.0
37 TraesCS3D01G393300 chr4A 89.773 88 7 2 2211 2297 66039494 66039408 2.090000e-20 111.0
38 TraesCS3D01G393300 chr4A 78.417 139 23 6 5719 5851 42265541 42265404 4.570000e-12 84.2
39 TraesCS3D01G393300 chr5A 88.889 414 33 6 2332 2738 262232326 262232733 1.380000e-136 497.0
40 TraesCS3D01G393300 chr5A 88.337 403 38 5 2340 2738 494575777 494576174 6.450000e-130 475.0
41 TraesCS3D01G393300 chr5B 87.324 426 39 7 2331 2748 604490856 604490438 2.320000e-129 473.0
42 TraesCS3D01G393300 chr5B 89.928 139 10 4 6464 6599 495225934 495225797 7.320000e-40 176.0
43 TraesCS3D01G393300 chr5B 86.250 80 11 0 2210 2289 158780538 158780617 3.530000e-13 87.9
44 TraesCS3D01G393300 chr7D 87.112 419 31 12 2326 2738 23195475 23195074 3.020000e-123 453.0
45 TraesCS3D01G393300 chr4D 81.181 271 46 5 6464 6732 346380220 346380487 5.580000e-51 213.0
46 TraesCS3D01G393300 chr4B 77.922 385 44 30 6464 6818 434389145 434389518 1.210000e-47 202.0
47 TraesCS3D01G393300 chr4B 77.428 381 51 29 6464 6818 279140366 279139995 2.020000e-45 195.0
48 TraesCS3D01G393300 chr4B 89.130 138 13 2 6464 6599 185607401 185607538 3.410000e-38 171.0
49 TraesCS3D01G393300 chr4B 77.000 300 61 7 6464 6761 427408878 427409171 1.590000e-36 165.0
50 TraesCS3D01G393300 chr7B 78.167 371 42 28 6476 6818 33857569 33857928 4.350000e-47 200.0
51 TraesCS3D01G393300 chr7B 91.463 82 7 0 2210 2291 88278464 88278545 5.820000e-21 113.0
52 TraesCS3D01G393300 chr7B 75.540 139 33 1 3613 3750 447706026 447706164 4.600000e-07 67.6
53 TraesCS3D01G393300 chr5D 85.795 176 17 6 6648 6818 231406616 231406444 5.660000e-41 180.0
54 TraesCS3D01G393300 chr5D 84.574 188 19 8 6637 6818 116290159 116289976 2.040000e-40 178.0
55 TraesCS3D01G393300 chr5D 82.895 152 15 8 6285 6432 339664382 339664526 7.480000e-25 126.0
56 TraesCS3D01G393300 chr7A 86.928 153 18 2 6464 6614 188982274 188982426 3.410000e-38 171.0
57 TraesCS3D01G393300 chr7A 92.105 38 2 1 3615 3651 502358485 502358448 1.300000e-02 52.8
58 TraesCS3D01G393300 chr6B 86.275 153 19 2 6464 6614 485147886 485147734 1.590000e-36 165.0
59 TraesCS3D01G393300 chr6B 86.275 153 19 2 6464 6614 485156309 485156157 1.590000e-36 165.0
60 TraesCS3D01G393300 chr2B 86.275 153 19 2 6464 6614 50073531 50073379 1.590000e-36 165.0
61 TraesCS3D01G393300 chr1D 92.045 88 7 0 2210 2297 73690429 73690342 2.690000e-24 124.0
62 TraesCS3D01G393300 chr1A 91.667 84 7 0 2210 2293 4545691 4545608 4.500000e-22 117.0
63 TraesCS3D01G393300 chr6D 84.071 113 17 1 5738 5849 61140756 61140644 2.710000e-19 108.0
64 TraesCS3D01G393300 chr6A 85.567 97 13 1 5738 5833 77784737 77784641 4.530000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G393300 chr3D 508389451 508396553 7102 False 13117.000000 13117 100.000000 1 7103 1 chr3D.!!$F2 7102
1 TraesCS3D01G393300 chr3A 646134234 646142327 8093 False 701.200000 3105 91.146300 1 5662 10 chr3A.!!$F2 5661
2 TraesCS3D01G393300 chr3B 671263532 671264988 1456 False 2034.000000 2034 91.835000 5632 7103 1 chr3B.!!$F5 1471
3 TraesCS3D01G393300 chr3B 671023770 671024342 572 False 905.000000 905 95.139000 1 576 1 chr3B.!!$F3 575
4 TraesCS3D01G393300 chr3B 671151714 671154469 2755 False 864.750000 1701 90.791750 3706 6430 4 chr3B.!!$F7 2724
5 TraesCS3D01G393300 chr3B 671131470 671136193 4723 False 628.833333 1908 92.450833 576 3709 6 chr3B.!!$F6 3133

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
647 2186 0.533491 TTACAACCGGGATCCACTCG 59.467 55.0 15.23 8.04 42.84 4.18 F
964 2513 0.533491 AAGCAGAGCAGAGCAGAGAG 59.467 55.0 0.00 0.00 0.00 3.20 F
2124 3770 0.623723 GGCAACCACCTCCCTGATTA 59.376 55.0 0.00 0.00 0.00 1.75 F
2612 5515 0.036294 GCTTCCACCACCTCTACACC 60.036 60.0 0.00 0.00 0.00 4.16 F
3504 7657 0.032540 TCAGCGTCATGATGGGATCG 59.967 55.0 16.59 6.90 33.83 3.69 F
4937 9183 0.387202 CTCGACATACCCTGGCTCAG 59.613 60.0 0.00 0.00 0.00 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2278 3928 0.032540 GCTGAGGCCCTGTTTGTTTG 59.967 55.0 0.0 0.0 0.00 2.93 R
2279 3929 0.106015 AGCTGAGGCCCTGTTTGTTT 60.106 50.0 0.0 0.0 39.73 2.83 R
3494 7640 0.031515 ACCACTACCCGATCCCATCA 60.032 55.0 0.0 0.0 0.00 3.07 R
4366 8526 0.395724 ATTTTCCATCAGTCCCCCGC 60.396 55.0 0.0 0.0 0.00 6.13 R
5472 9723 0.312416 CCTCTACGAAGATGCTCGGG 59.688 60.0 0.0 0.0 43.22 5.14 R
6818 11122 0.329261 TTGCACATCCCTCTTCCCAG 59.671 55.0 0.0 0.0 0.00 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
145 147 4.998671 TCTGATCTCTCGAAAGCTTCAT 57.001 40.909 0.00 0.00 0.00 2.57
175 178 5.584551 AACTCCCTAACCACTGAGAATTT 57.415 39.130 0.00 0.00 0.00 1.82
217 220 9.522804 CTAAATTACCATACTCTGACTTGAGAC 57.477 37.037 0.00 0.00 37.50 3.36
291 294 6.016024 CCAAAATCAGAAGACTTGACCATTGA 60.016 38.462 0.00 0.00 0.00 2.57
404 408 2.820787 CTCCTCCCGCGTATCTCTTAAT 59.179 50.000 4.92 0.00 0.00 1.40
435 439 1.664873 CTAGCCGAGCCATCCTCAG 59.335 63.158 0.00 0.00 40.78 3.35
538 542 1.078823 ACCCTGAGTCCATCCTGTGTA 59.921 52.381 0.00 0.00 0.00 2.90
610 2130 2.305635 TCATGCTAGTTTTCTCTGCCCA 59.694 45.455 0.00 0.00 0.00 5.36
612 2132 1.699634 TGCTAGTTTTCTCTGCCCACT 59.300 47.619 0.00 0.00 0.00 4.00
614 2134 2.611518 CTAGTTTTCTCTGCCCACTCG 58.388 52.381 0.00 0.00 0.00 4.18
630 2169 5.626116 GCCCACTCGAACTTTATTCCTCTTA 60.626 44.000 0.00 0.00 0.00 2.10
634 2173 7.148623 CCACTCGAACTTTATTCCTCTTACAAC 60.149 40.741 0.00 0.00 0.00 3.32
636 2175 5.865552 TCGAACTTTATTCCTCTTACAACCG 59.134 40.000 0.00 0.00 0.00 4.44
637 2176 5.063060 CGAACTTTATTCCTCTTACAACCGG 59.937 44.000 0.00 0.00 0.00 5.28
638 2177 4.840271 ACTTTATTCCTCTTACAACCGGG 58.160 43.478 6.32 0.00 0.00 5.73
639 2178 4.533311 ACTTTATTCCTCTTACAACCGGGA 59.467 41.667 6.32 0.00 0.00 5.14
640 2179 5.191124 ACTTTATTCCTCTTACAACCGGGAT 59.809 40.000 6.32 0.00 0.00 3.85
641 2180 3.840124 ATTCCTCTTACAACCGGGATC 57.160 47.619 6.32 0.00 0.00 3.36
642 2181 1.492764 TCCTCTTACAACCGGGATCC 58.507 55.000 6.32 1.92 0.00 3.36
643 2182 1.200519 CCTCTTACAACCGGGATCCA 58.799 55.000 15.23 0.00 0.00 3.41
644 2183 1.134491 CCTCTTACAACCGGGATCCAC 60.134 57.143 15.23 1.85 0.00 4.02
645 2184 1.831736 CTCTTACAACCGGGATCCACT 59.168 52.381 15.23 0.00 0.00 4.00
646 2185 1.829222 TCTTACAACCGGGATCCACTC 59.171 52.381 15.23 0.00 0.00 3.51
647 2186 0.533491 TTACAACCGGGATCCACTCG 59.467 55.000 15.23 8.04 42.84 4.18
648 2187 0.612732 TACAACCGGGATCCACTCGT 60.613 55.000 15.23 6.21 41.44 4.18
649 2188 1.153628 CAACCGGGATCCACTCGTC 60.154 63.158 15.23 0.00 41.44 4.20
650 2189 2.356780 AACCGGGATCCACTCGTCC 61.357 63.158 15.23 0.00 41.44 4.79
651 2190 2.758327 CCGGGATCCACTCGTCCA 60.758 66.667 15.23 0.00 41.44 4.02
685 2224 4.400567 GCACCAAAGAGCTCCATTTCTATT 59.599 41.667 10.93 0.00 0.00 1.73
692 2231 3.549794 AGCTCCATTTCTATTGAGCCAC 58.450 45.455 6.72 0.00 45.87 5.01
696 2235 3.197766 TCCATTTCTATTGAGCCACGAGT 59.802 43.478 0.00 0.00 0.00 4.18
898 2442 2.030213 GCAACATCATCTTCTCAGCGAC 59.970 50.000 0.00 0.00 0.00 5.19
932 2476 2.539953 CCTGTTGAGCTACTCGATCGAC 60.540 54.545 15.15 4.35 41.75 4.20
936 2480 1.015109 GAGCTACTCGATCGACACCA 58.985 55.000 15.15 0.00 0.00 4.17
937 2481 1.003331 GAGCTACTCGATCGACACCAG 60.003 57.143 15.15 6.74 0.00 4.00
942 2486 0.863538 CTCGATCGACACCAGCGAAG 60.864 60.000 15.15 0.00 41.52 3.79
964 2513 0.533491 AAGCAGAGCAGAGCAGAGAG 59.467 55.000 0.00 0.00 0.00 3.20
1017 2566 3.683847 GCAATATGAGGAAGCTGGTGAGT 60.684 47.826 0.00 0.00 0.00 3.41
1103 2652 1.831736 CGGGTTCTACCTCTTCACCAT 59.168 52.381 0.00 0.00 38.64 3.55
1111 2660 1.513158 CTCTTCACCATCGCCGTCT 59.487 57.895 0.00 0.00 0.00 4.18
1283 2832 3.944250 AAATGCCCGCCTGACCTGG 62.944 63.158 0.00 0.00 0.00 4.45
1304 2853 2.223135 GGAATCTTGCGTCTTGCTAAGC 60.223 50.000 0.00 0.00 46.63 3.09
1339 2891 3.171388 AGGATGGCCGGGATGTCC 61.171 66.667 2.18 0.68 39.96 4.02
1452 3050 4.141733 TGCATTTGCTGTATGACCTAGCTA 60.142 41.667 3.94 0.00 42.66 3.32
1458 3056 5.019470 TGCTGTATGACCTAGCTAGCATAT 58.981 41.667 18.83 10.44 38.25 1.78
1459 3057 6.187682 TGCTGTATGACCTAGCTAGCATATA 58.812 40.000 18.83 14.26 38.25 0.86
1461 3059 6.975772 GCTGTATGACCTAGCTAGCATATAAC 59.024 42.308 18.83 9.70 34.70 1.89
1462 3060 7.363007 GCTGTATGACCTAGCTAGCATATAACA 60.363 40.741 18.83 13.10 34.70 2.41
1464 3062 8.687242 TGTATGACCTAGCTAGCATATAACATC 58.313 37.037 18.83 6.41 0.00 3.06
1465 3063 7.969690 ATGACCTAGCTAGCATATAACATCT 57.030 36.000 18.83 0.00 0.00 2.90
1467 3065 7.606349 TGACCTAGCTAGCATATAACATCTTG 58.394 38.462 18.83 0.00 0.00 3.02
1474 3073 8.021973 AGCTAGCATATAACATCTTGTACGTAC 58.978 37.037 18.90 18.90 0.00 3.67
1477 3076 7.864686 AGCATATAACATCTTGTACGTACGTA 58.135 34.615 23.60 23.60 0.00 3.57
1489 3088 0.704551 CGTACGTACGGTTTCAGCAC 59.295 55.000 34.54 3.42 45.30 4.40
1490 3089 1.769733 GTACGTACGGTTTCAGCACA 58.230 50.000 21.06 0.00 0.00 4.57
1510 3109 4.948576 CACACATGCATGCACGTT 57.051 50.000 25.37 9.13 0.00 3.99
1511 3110 3.182538 CACACATGCATGCACGTTT 57.817 47.368 25.37 11.90 0.00 3.60
1512 3111 0.779408 CACACATGCATGCACGTTTG 59.221 50.000 25.37 20.84 0.00 2.93
1513 3112 0.667453 ACACATGCATGCACGTTTGA 59.333 45.000 25.37 0.00 0.00 2.69
1514 3113 1.054574 CACATGCATGCACGTTTGAC 58.945 50.000 25.37 0.00 0.00 3.18
1530 3129 1.671379 GACGTCTGGTTTCAGGGCC 60.671 63.158 8.70 0.00 41.23 5.80
1651 3250 6.183360 CCGCGGTGAGAATTGATAGATAGATA 60.183 42.308 19.50 0.00 0.00 1.98
1705 3319 5.535783 ACATGGATTGTTTGTGACTGATGAA 59.464 36.000 0.00 0.00 33.74 2.57
1825 3470 4.502259 CCATGACAAGGTACTCCATAGAGC 60.502 50.000 0.00 0.00 44.65 4.09
1919 3564 9.871238 TCTTACATAAAGGTTCTACAGAATCAC 57.129 33.333 5.10 0.00 37.62 3.06
1941 3587 3.728864 CGCATGAAAACCTCAGGAATTCG 60.729 47.826 0.00 0.00 38.11 3.34
1957 3603 5.756833 AGGAATTCGATCGGTTGGTAATTAC 59.243 40.000 16.41 12.78 0.00 1.89
2124 3770 0.623723 GGCAACCACCTCCCTGATTA 59.376 55.000 0.00 0.00 0.00 1.75
2125 3771 1.215423 GGCAACCACCTCCCTGATTAT 59.785 52.381 0.00 0.00 0.00 1.28
2126 3772 2.358195 GGCAACCACCTCCCTGATTATT 60.358 50.000 0.00 0.00 0.00 1.40
2127 3773 3.117663 GGCAACCACCTCCCTGATTATTA 60.118 47.826 0.00 0.00 0.00 0.98
2128 3774 4.447762 GGCAACCACCTCCCTGATTATTAT 60.448 45.833 0.00 0.00 0.00 1.28
2129 3775 5.140454 GCAACCACCTCCCTGATTATTATT 58.860 41.667 0.00 0.00 0.00 1.40
2130 3776 6.303839 GCAACCACCTCCCTGATTATTATTA 58.696 40.000 0.00 0.00 0.00 0.98
2131 3777 6.948309 GCAACCACCTCCCTGATTATTATTAT 59.052 38.462 0.00 0.00 0.00 1.28
2132 3778 7.451566 GCAACCACCTCCCTGATTATTATTATT 59.548 37.037 0.00 0.00 0.00 1.40
2133 3779 9.367160 CAACCACCTCCCTGATTATTATTATTT 57.633 33.333 0.00 0.00 0.00 1.40
2134 3780 9.951866 AACCACCTCCCTGATTATTATTATTTT 57.048 29.630 0.00 0.00 0.00 1.82
2135 3781 9.367160 ACCACCTCCCTGATTATTATTATTTTG 57.633 33.333 0.00 0.00 0.00 2.44
2136 3782 8.306761 CCACCTCCCTGATTATTATTATTTTGC 58.693 37.037 0.00 0.00 0.00 3.68
2137 3783 8.023128 CACCTCCCTGATTATTATTATTTTGCG 58.977 37.037 0.00 0.00 0.00 4.85
2138 3784 7.176690 ACCTCCCTGATTATTATTATTTTGCGG 59.823 37.037 0.00 0.00 0.00 5.69
2139 3785 7.362920 CCTCCCTGATTATTATTATTTTGCGGG 60.363 40.741 0.00 0.00 0.00 6.13
2140 3786 7.007723 TCCCTGATTATTATTATTTTGCGGGT 58.992 34.615 0.00 0.00 0.00 5.28
2141 3787 7.040062 TCCCTGATTATTATTATTTTGCGGGTG 60.040 37.037 0.00 0.00 0.00 4.61
2142 3788 7.040062 CCCTGATTATTATTATTTTGCGGGTGA 60.040 37.037 0.00 0.00 0.00 4.02
2143 3789 8.356657 CCTGATTATTATTATTTTGCGGGTGAA 58.643 33.333 0.00 0.00 0.00 3.18
2144 3790 9.180678 CTGATTATTATTATTTTGCGGGTGAAC 57.819 33.333 0.00 0.00 0.00 3.18
2145 3791 8.138712 TGATTATTATTATTTTGCGGGTGAACC 58.861 33.333 0.00 0.00 0.00 3.62
2146 3792 5.923733 ATTATTATTTTGCGGGTGAACCA 57.076 34.783 1.16 0.00 40.22 3.67
2147 3793 3.586100 ATTATTTTGCGGGTGAACCAC 57.414 42.857 1.16 0.00 40.22 4.16
2185 3831 4.037858 ACGATAATCCTACACCAACGTC 57.962 45.455 0.00 0.00 0.00 4.34
2223 3873 7.793927 CCTCTTTTAGGCACCTATTTAGAAG 57.206 40.000 0.00 0.00 38.97 2.85
2224 3874 6.261158 CCTCTTTTAGGCACCTATTTAGAAGC 59.739 42.308 0.00 0.00 38.97 3.86
2225 3875 6.958767 TCTTTTAGGCACCTATTTAGAAGCT 58.041 36.000 0.00 0.00 0.00 3.74
2226 3876 7.402862 TCTTTTAGGCACCTATTTAGAAGCTT 58.597 34.615 0.00 0.00 0.00 3.74
2227 3877 7.888546 TCTTTTAGGCACCTATTTAGAAGCTTT 59.111 33.333 0.00 0.00 0.00 3.51
2228 3878 8.417273 TTTTAGGCACCTATTTAGAAGCTTTT 57.583 30.769 0.00 0.00 0.00 2.27
2229 3879 9.523168 TTTTAGGCACCTATTTAGAAGCTTTTA 57.477 29.630 0.00 0.00 0.00 1.52
2230 3880 9.695155 TTTAGGCACCTATTTAGAAGCTTTTAT 57.305 29.630 0.00 0.00 0.00 1.40
2231 3881 7.573968 AGGCACCTATTTAGAAGCTTTTATG 57.426 36.000 0.00 0.00 0.00 1.90
2232 3882 6.547510 AGGCACCTATTTAGAAGCTTTTATGG 59.452 38.462 0.00 2.81 0.00 2.74
2233 3883 6.209361 GCACCTATTTAGAAGCTTTTATGGC 58.791 40.000 0.00 0.00 0.00 4.40
2234 3884 6.039829 GCACCTATTTAGAAGCTTTTATGGCT 59.960 38.462 0.00 0.00 42.31 4.75
2243 3893 4.953940 AGCTTTTATGGCTTTTTGGACA 57.046 36.364 0.00 0.00 36.56 4.02
2244 3894 5.289083 AGCTTTTATGGCTTTTTGGACAA 57.711 34.783 0.00 0.00 36.56 3.18
2245 3895 5.679601 AGCTTTTATGGCTTTTTGGACAAA 58.320 33.333 0.00 0.00 36.56 2.83
2246 3896 6.118852 AGCTTTTATGGCTTTTTGGACAAAA 58.881 32.000 6.14 6.14 36.56 2.44
2247 3897 6.772233 AGCTTTTATGGCTTTTTGGACAAAAT 59.228 30.769 10.64 0.00 39.69 1.82
2248 3898 7.936301 AGCTTTTATGGCTTTTTGGACAAAATA 59.064 29.630 10.64 0.00 39.69 1.40
2249 3899 8.563732 GCTTTTATGGCTTTTTGGACAAAATAA 58.436 29.630 10.64 4.32 39.69 1.40
2273 3923 7.665561 AAAAAGTTACAAAAGCAGAAGCAAA 57.334 28.000 0.00 0.00 45.49 3.68
2274 3924 7.665561 AAAAGTTACAAAAGCAGAAGCAAAA 57.334 28.000 0.00 0.00 45.49 2.44
2275 3925 6.892310 AAGTTACAAAAGCAGAAGCAAAAG 57.108 33.333 0.00 0.00 45.49 2.27
2276 3926 4.805719 AGTTACAAAAGCAGAAGCAAAAGC 59.194 37.500 0.00 0.00 45.49 3.51
2277 3927 2.554142 ACAAAAGCAGAAGCAAAAGCC 58.446 42.857 0.00 0.00 45.49 4.35
2278 3928 1.869132 CAAAAGCAGAAGCAAAAGCCC 59.131 47.619 0.00 0.00 45.49 5.19
2279 3929 1.122227 AAAGCAGAAGCAAAAGCCCA 58.878 45.000 0.00 0.00 45.49 5.36
2280 3930 1.122227 AAGCAGAAGCAAAAGCCCAA 58.878 45.000 0.00 0.00 45.49 4.12
2281 3931 1.122227 AGCAGAAGCAAAAGCCCAAA 58.878 45.000 0.00 0.00 45.49 3.28
2282 3932 1.202568 AGCAGAAGCAAAAGCCCAAAC 60.203 47.619 0.00 0.00 45.49 2.93
2283 3933 1.473080 GCAGAAGCAAAAGCCCAAACA 60.473 47.619 0.00 0.00 41.58 2.83
2284 3934 2.903798 CAGAAGCAAAAGCCCAAACAA 58.096 42.857 0.00 0.00 0.00 2.83
2285 3935 3.269178 CAGAAGCAAAAGCCCAAACAAA 58.731 40.909 0.00 0.00 0.00 2.83
2286 3936 3.063861 CAGAAGCAAAAGCCCAAACAAAC 59.936 43.478 0.00 0.00 0.00 2.93
2287 3937 2.777832 AGCAAAAGCCCAAACAAACA 57.222 40.000 0.00 0.00 0.00 2.83
2288 3938 2.631267 AGCAAAAGCCCAAACAAACAG 58.369 42.857 0.00 0.00 0.00 3.16
2289 3939 1.670295 GCAAAAGCCCAAACAAACAGG 59.330 47.619 0.00 0.00 0.00 4.00
2290 3940 2.287769 CAAAAGCCCAAACAAACAGGG 58.712 47.619 0.00 0.00 45.68 4.45
2293 3943 4.293610 CCCAAACAAACAGGGCCT 57.706 55.556 0.00 0.00 35.44 5.19
2294 3944 2.049435 CCCAAACAAACAGGGCCTC 58.951 57.895 0.95 0.00 35.44 4.70
2295 3945 0.758685 CCCAAACAAACAGGGCCTCA 60.759 55.000 0.95 0.00 35.44 3.86
2296 3946 0.675633 CCAAACAAACAGGGCCTCAG 59.324 55.000 0.95 0.00 0.00 3.35
2327 3977 2.290641 ACCGGAATGAACTGGTGCAATA 60.291 45.455 9.46 0.00 46.35 1.90
2400 4054 6.811665 GCAACGCTTAAAAGAAAGGGAATAAT 59.188 34.615 7.54 0.00 40.77 1.28
2457 4111 5.396548 GGGGAGAAAACTTAGCTAACCTAGG 60.397 48.000 7.41 7.41 0.00 3.02
2458 4112 5.117584 GGAGAAAACTTAGCTAACCTAGGC 58.882 45.833 9.30 0.00 0.00 3.93
2459 4113 4.756502 AGAAAACTTAGCTAACCTAGGCG 58.243 43.478 9.30 0.00 0.00 5.52
2483 4137 4.393062 CCAATTCGTGAGCTACTTGATTGT 59.607 41.667 0.00 0.00 0.00 2.71
2612 5515 0.036294 GCTTCCACCACCTCTACACC 60.036 60.000 0.00 0.00 0.00 4.16
2613 5516 1.348064 CTTCCACCACCTCTACACCA 58.652 55.000 0.00 0.00 0.00 4.17
2676 5579 9.829507 CAGACTAGATTCATTCCAAATCTTACT 57.170 33.333 0.00 0.52 42.16 2.24
2753 5664 5.718649 GCAATGAGCGTGTCTTTAGATTA 57.281 39.130 0.00 0.00 0.00 1.75
2754 5665 6.292389 GCAATGAGCGTGTCTTTAGATTAT 57.708 37.500 0.00 0.00 0.00 1.28
2755 5666 6.132056 GCAATGAGCGTGTCTTTAGATTATG 58.868 40.000 0.00 0.00 0.00 1.90
2756 5667 6.238211 GCAATGAGCGTGTCTTTAGATTATGT 60.238 38.462 0.00 0.00 0.00 2.29
2757 5668 6.834959 ATGAGCGTGTCTTTAGATTATGTG 57.165 37.500 0.00 0.00 0.00 3.21
2758 5669 4.566759 TGAGCGTGTCTTTAGATTATGTGC 59.433 41.667 0.00 0.00 0.00 4.57
2792 5841 6.590068 GGTAACCTTCCCTAACTAATTCTCC 58.410 44.000 0.00 0.00 0.00 3.71
2794 5843 3.710165 ACCTTCCCTAACTAATTCTCCCG 59.290 47.826 0.00 0.00 0.00 5.14
2799 5848 2.047830 CTAACTAATTCTCCCGCCCCT 58.952 52.381 0.00 0.00 0.00 4.79
2804 5853 0.106519 AATTCTCCCGCCCCTTGATG 60.107 55.000 0.00 0.00 0.00 3.07
2810 5859 2.398554 CCGCCCCTTGATGTTCACG 61.399 63.158 0.00 0.00 0.00 4.35
2811 5860 2.398554 CGCCCCTTGATGTTCACGG 61.399 63.158 0.00 0.00 35.74 4.94
2867 5920 5.992729 TGCTAAAGTTCCACGTCATTTTAC 58.007 37.500 0.00 0.00 0.00 2.01
2998 6052 3.244561 GGAGCTAGGCCAAGCAATACATA 60.245 47.826 5.01 0.00 45.30 2.29
3006 6060 4.035675 GGCCAAGCAATACATACAGTCTTC 59.964 45.833 0.00 0.00 0.00 2.87
3077 6131 6.476380 CGATATACGTTGCTAGGGTTTGTTAA 59.524 38.462 0.00 0.00 37.22 2.01
3084 6138 4.662278 TGCTAGGGTTTGTTAAGATTGCT 58.338 39.130 0.00 0.00 0.00 3.91
3085 6139 4.700213 TGCTAGGGTTTGTTAAGATTGCTC 59.300 41.667 0.00 0.00 0.00 4.26
3107 6161 4.037684 TCGAAGAGAGGAGAAAGTTCGTTT 59.962 41.667 0.00 0.00 38.31 3.60
3129 6183 0.539669 GTTGTTGGGGGAGACAAGGG 60.540 60.000 0.00 0.00 36.52 3.95
3131 6185 3.646715 TTGGGGGAGACAAGGGCG 61.647 66.667 0.00 0.00 0.00 6.13
3135 6189 2.266055 GGGAGACAAGGGCGTGAG 59.734 66.667 0.00 0.00 0.00 3.51
3165 6219 1.961378 CATGCAGCACACACCACAT 59.039 52.632 0.00 0.00 0.00 3.21
3174 6228 0.953727 ACACACCACATCACATGCAC 59.046 50.000 0.00 0.00 0.00 4.57
3182 6236 1.069296 ACATCACATGCACGTTTTCCG 60.069 47.619 0.00 0.00 44.03 4.30
3194 6248 1.466950 CGTTTTCCGTATGTGCCATGT 59.533 47.619 0.00 0.00 0.00 3.21
3197 6251 2.779755 TTCCGTATGTGCCATGTTCT 57.220 45.000 0.00 0.00 0.00 3.01
3367 7513 3.005554 CTGACAAATTGCGTCATCTCCT 58.994 45.455 10.48 0.00 42.27 3.69
3376 7522 1.863267 CGTCATCTCCTCAGGCATTC 58.137 55.000 0.00 0.00 0.00 2.67
3410 7556 0.322975 CACCTCTGAGAACTGGGTGG 59.677 60.000 6.17 0.00 42.39 4.61
3494 7640 0.247736 GTGAGTCCCTTCAGCGTCAT 59.752 55.000 0.00 0.00 0.00 3.06
3502 7655 1.202734 CCTTCAGCGTCATGATGGGAT 60.203 52.381 16.59 0.00 39.62 3.85
3503 7656 2.141517 CTTCAGCGTCATGATGGGATC 58.858 52.381 16.59 0.00 33.83 3.36
3504 7657 0.032540 TCAGCGTCATGATGGGATCG 59.967 55.000 16.59 6.90 33.83 3.69
3505 7658 0.947660 CAGCGTCATGATGGGATCGG 60.948 60.000 16.59 0.00 0.00 4.18
3506 7659 1.669115 GCGTCATGATGGGATCGGG 60.669 63.158 16.59 0.00 0.00 5.14
3507 7660 1.748403 CGTCATGATGGGATCGGGT 59.252 57.895 7.06 0.00 0.00 5.28
3508 7661 0.966179 CGTCATGATGGGATCGGGTA 59.034 55.000 7.06 0.00 0.00 3.69
3696 7852 5.552178 ACTCAATTAGAAAAGCGGAGAAGT 58.448 37.500 0.00 0.00 0.00 3.01
3934 8090 7.928706 AGTCTTTGTAAGAATGATATTCCTCCG 59.071 37.037 0.00 0.00 39.67 4.63
3943 8099 4.411256 TGATATTCCTCCGTGGGTTTAC 57.589 45.455 0.00 0.00 36.20 2.01
3960 8116 4.386088 GGTTTACTAAAATCTCCCTCCCCC 60.386 50.000 0.00 0.00 0.00 5.40
4052 8208 2.787191 TGTGCGTGGACACATGTTT 58.213 47.368 0.00 0.00 45.36 2.83
4064 8220 6.019640 GTGGACACATGTTTCAAAAATCAGTG 60.020 38.462 13.73 0.00 0.00 3.66
4195 8354 1.352352 ACAGCACCAAGTCAGGCTAAT 59.648 47.619 0.00 0.00 34.25 1.73
4252 8411 7.601508 GGACCCATAGATAATTTGTAGTTACCG 59.398 40.741 0.00 0.00 0.00 4.02
4363 8523 5.995565 TCAGTGCTAATGTGTAGTTACCT 57.004 39.130 0.00 0.00 0.00 3.08
4364 8524 5.720202 TCAGTGCTAATGTGTAGTTACCTG 58.280 41.667 0.00 0.00 0.00 4.00
4366 8526 5.348724 CAGTGCTAATGTGTAGTTACCTGTG 59.651 44.000 0.00 0.00 0.00 3.66
4383 8548 2.227757 TGCGGGGGACTGATGGAAA 61.228 57.895 0.00 0.00 39.98 3.13
4396 8561 4.016666 ACTGATGGAAAATACCAATCCCCA 60.017 41.667 0.00 0.00 43.47 4.96
4434 8599 3.760684 ACTACGTACTCCCTTCGTTTCAT 59.239 43.478 0.00 0.00 38.69 2.57
4441 8606 7.983484 ACGTACTCCCTTCGTTTCATAATAATT 59.017 33.333 0.00 0.00 34.07 1.40
4495 8660 9.241317 CTTTCTTACGTTTGACAAACTCTACTA 57.759 33.333 24.60 7.36 39.23 1.82
4648 8816 7.509546 TGGCAAACCCAAACTTCAATTATTTA 58.490 30.769 0.00 0.00 41.82 1.40
4656 8824 9.750125 CCCAAACTTCAATTATTTAGGAATAGC 57.250 33.333 0.00 0.00 0.00 2.97
4671 8910 6.481434 AGGAATAGCGGTAGTACTTTTGAT 57.519 37.500 0.00 0.00 0.00 2.57
4687 8926 7.658525 ACTTTTGATCAATATGCATACCCAA 57.341 32.000 8.99 6.31 0.00 4.12
4688 8927 8.253867 ACTTTTGATCAATATGCATACCCAAT 57.746 30.769 8.99 0.58 0.00 3.16
4689 8928 8.707449 ACTTTTGATCAATATGCATACCCAATT 58.293 29.630 8.99 0.00 0.00 2.32
4730 8976 5.695851 GCTTAATAGCAGCCACACATAAT 57.304 39.130 0.00 0.00 46.95 1.28
4738 8984 2.612212 CAGCCACACATAATCGGGTAAC 59.388 50.000 0.00 0.00 0.00 2.50
4740 8986 3.011119 GCCACACATAATCGGGTAACAA 58.989 45.455 0.00 0.00 39.74 2.83
4749 8995 7.444183 CACATAATCGGGTAACAAGTATCCATT 59.556 37.037 0.00 0.00 31.51 3.16
4768 9014 8.756486 ATCCATTGTCATCTTGATTTCATACA 57.244 30.769 0.00 0.00 0.00 2.29
4802 9048 3.430374 GCACCACGACACCTTCTATACAT 60.430 47.826 0.00 0.00 0.00 2.29
4813 9059 7.076446 ACACCTTCTATACATTGGTCCTCTAT 58.924 38.462 0.00 0.00 0.00 1.98
4863 9109 2.248248 CCAGAAGATGGCCGGTCTATA 58.752 52.381 7.97 0.00 43.83 1.31
4866 9112 2.900546 AGAAGATGGCCGGTCTATAAGG 59.099 50.000 7.97 0.00 0.00 2.69
4937 9183 0.387202 CTCGACATACCCTGGCTCAG 59.613 60.000 0.00 0.00 0.00 3.35
5167 9413 0.736053 GACGACCAAGTTTTGTGGCA 59.264 50.000 0.00 0.00 40.02 4.92
5347 9598 4.962995 TGGACCCATTTTTGTGAGGTTTTA 59.037 37.500 0.00 0.00 0.00 1.52
5427 9678 2.134354 TGGGAGGATAATGATGGTGCA 58.866 47.619 0.00 0.00 0.00 4.57
5433 9684 5.479375 GGAGGATAATGATGGTGCATTGAAT 59.521 40.000 0.00 0.00 38.80 2.57
5436 9687 7.236529 AGGATAATGATGGTGCATTGAATACT 58.763 34.615 0.00 0.00 38.80 2.12
5472 9723 2.758979 TCCTCGGATTCCAGTAGAACAC 59.241 50.000 3.09 0.00 37.29 3.32
5484 9735 2.166664 AGTAGAACACCCGAGCATCTTC 59.833 50.000 0.00 0.00 0.00 2.87
5510 9761 2.107031 AGGATGATTCGGATTGCCATCA 59.893 45.455 6.28 2.99 36.32 3.07
5853 10146 3.979911 TGGACCAAATTGCACTATCCAT 58.020 40.909 0.00 0.00 29.85 3.41
5996 10289 2.156098 GTTTGTGATGAACCGCCCTAA 58.844 47.619 0.00 0.00 0.00 2.69
6001 10294 1.631388 TGATGAACCGCCCTAAAGGAA 59.369 47.619 0.00 0.00 38.24 3.36
6088 10381 2.285977 CCCCACTTACGCTACCAAATC 58.714 52.381 0.00 0.00 0.00 2.17
6131 10424 7.521509 ACATCTTTGCTTATCGTACTTACAC 57.478 36.000 0.00 0.00 0.00 2.90
6256 10550 1.954382 TGTTCTGAGCTCACACGTACT 59.046 47.619 13.74 0.00 0.00 2.73
6273 10567 0.549469 ACTTTTCAACACGGACCCCT 59.451 50.000 0.00 0.00 0.00 4.79
6274 10568 1.235724 CTTTTCAACACGGACCCCTC 58.764 55.000 0.00 0.00 0.00 4.30
6275 10569 0.841289 TTTTCAACACGGACCCCTCT 59.159 50.000 0.00 0.00 0.00 3.69
6277 10571 1.719529 TTCAACACGGACCCCTCTTA 58.280 50.000 0.00 0.00 0.00 2.10
6279 10573 2.262637 TCAACACGGACCCCTCTTAAT 58.737 47.619 0.00 0.00 0.00 1.40
6280 10574 3.443052 TCAACACGGACCCCTCTTAATA 58.557 45.455 0.00 0.00 0.00 0.98
6281 10575 3.449737 TCAACACGGACCCCTCTTAATAG 59.550 47.826 0.00 0.00 0.00 1.73
6282 10576 3.111741 ACACGGACCCCTCTTAATAGT 57.888 47.619 0.00 0.00 0.00 2.12
6283 10577 4.255510 ACACGGACCCCTCTTAATAGTA 57.744 45.455 0.00 0.00 0.00 1.82
6320 10624 3.552604 AAAACATCGGAAACACCATCG 57.447 42.857 0.00 0.00 38.90 3.84
6352 10656 3.560226 TCCAGAGGGGAGCCTAATC 57.440 57.895 0.00 0.00 42.15 1.75
6361 10665 1.207329 GGGAGCCTAATCGTCTTGTGT 59.793 52.381 0.00 0.00 0.00 3.72
6418 10722 3.432933 GGTTAGTCCGCAAATTACGTTGA 59.567 43.478 0.00 0.00 0.00 3.18
6438 10742 6.516739 TTGACATCAACACCAAAACACTTA 57.483 33.333 0.00 0.00 0.00 2.24
6441 10745 4.202111 ACATCAACACCAAAACACTTAGGC 60.202 41.667 0.00 0.00 0.00 3.93
6447 10751 2.091555 ACCAAAACACTTAGGCAGGGAA 60.092 45.455 0.00 0.00 0.00 3.97
6482 10786 1.748732 TAACACCCATCCCTCCAACA 58.251 50.000 0.00 0.00 0.00 3.33
6483 10787 0.405585 AACACCCATCCCTCCAACAG 59.594 55.000 0.00 0.00 0.00 3.16
6533 10837 3.314307 TCGGGATACACCTTCATCTCT 57.686 47.619 0.00 0.00 38.98 3.10
6538 10842 4.442192 GGGATACACCTTCATCTCTGTGTC 60.442 50.000 0.00 0.00 41.76 3.67
6564 10868 2.848071 GTTATCCCTAACCCAACTCCCA 59.152 50.000 0.00 0.00 32.63 4.37
6565 10869 2.068831 ATCCCTAACCCAACTCCCAA 57.931 50.000 0.00 0.00 0.00 4.12
6588 10892 5.014202 ACTTGTGGTTTACTTTGGTCACTT 58.986 37.500 0.00 0.00 0.00 3.16
6596 10900 1.013596 CTTTGGTCACTTGACGTGCA 58.986 50.000 0.00 0.00 45.65 4.57
6665 10969 5.048013 ACTTTAGCAATTGTTTAGGCTCACC 60.048 40.000 7.40 0.00 37.79 4.02
6676 10980 5.010719 TGTTTAGGCTCACCTCTATATTCCG 59.989 44.000 0.00 0.00 46.34 4.30
6684 10988 2.002586 CCTCTATATTCCGCATTGCCG 58.997 52.381 2.41 0.00 0.00 5.69
6698 11002 5.451908 CGCATTGCCGAAACTTCATAATAT 58.548 37.500 2.41 0.00 0.00 1.28
6818 11122 1.243902 CCTCCCTAGAGCGAGATGAC 58.756 60.000 0.00 0.00 38.96 3.06
6822 11126 0.958091 CCTAGAGCGAGATGACTGGG 59.042 60.000 0.00 0.00 0.00 4.45
6831 11135 2.688477 GAGATGACTGGGAAGAGGGAT 58.312 52.381 0.00 0.00 0.00 3.85
6847 11151 2.024414 GGGATGTGCAAGATACCAACC 58.976 52.381 3.67 0.00 41.24 3.77
6848 11152 2.620367 GGGATGTGCAAGATACCAACCA 60.620 50.000 3.67 0.00 41.24 3.67
6855 11159 2.445427 CAAGATACCAACCATGTGGCA 58.555 47.619 2.30 0.00 43.00 4.92
6863 11167 2.211806 CAACCATGTGGCACTTTTTGG 58.788 47.619 19.83 20.10 39.32 3.28
6886 11190 2.789409 CCGGAAAGGAAACATCCTCT 57.211 50.000 0.00 0.00 45.00 3.69
6926 11230 4.716784 AGCATTATACCTCCACAGAAGTCA 59.283 41.667 0.00 0.00 0.00 3.41
6929 11233 7.071196 AGCATTATACCTCCACAGAAGTCATAA 59.929 37.037 0.00 0.00 0.00 1.90
6980 11284 3.278668 AGATCATGGTTGAAGAGGCTG 57.721 47.619 0.00 0.00 34.96 4.85
6990 11294 1.066858 TGAAGAGGCTGTAGCGGAAAG 60.067 52.381 0.00 0.00 43.26 2.62
7034 11338 2.764128 GAGTCTCCATCGGCCCCA 60.764 66.667 0.00 0.00 0.00 4.96
7035 11339 2.765807 AGTCTCCATCGGCCCCAG 60.766 66.667 0.00 0.00 0.00 4.45
7054 11358 1.004918 AGTGAAGGAAAGTCCGCCG 60.005 57.895 0.00 0.00 42.75 6.46
7061 11365 0.806492 GGAAAGTCCGCCGATGACTC 60.806 60.000 0.00 0.00 42.10 3.36
7086 11390 1.078656 AGTGCTCTCCTTTCCTCTCCT 59.921 52.381 0.00 0.00 0.00 3.69
7095 11399 4.611367 TCCTTTCCTCTCCTCGAAGTAAT 58.389 43.478 0.00 0.00 0.00 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 6.600427 TGATCTAGTATTGGTCGACTGTAACA 59.400 38.462 16.46 0.93 0.00 2.41
21 22 9.745880 TTTATTTCTGATCTAGTATTGGTCGAC 57.254 33.333 7.13 7.13 0.00 4.20
145 147 7.236019 TCTCAGTGGTTAGGGAGTTTAAACATA 59.764 37.037 20.06 5.07 31.05 2.29
217 220 2.544480 TCTGTATCAGACACTTCGCG 57.456 50.000 0.00 0.00 35.39 5.87
291 294 2.996631 CTAGGCATGAACCTTGCTCTT 58.003 47.619 0.00 0.00 41.50 2.85
435 439 2.403037 CGGTCGACGTTTCTTTCAGTAC 59.597 50.000 9.92 0.00 37.93 2.73
610 2130 6.872547 GGTTGTAAGAGGAATAAAGTTCGAGT 59.127 38.462 0.00 0.00 0.00 4.18
612 2132 5.865552 CGGTTGTAAGAGGAATAAAGTTCGA 59.134 40.000 0.00 0.00 0.00 3.71
614 2134 5.353400 CCCGGTTGTAAGAGGAATAAAGTTC 59.647 44.000 0.00 0.00 0.00 3.01
630 2169 1.885163 GACGAGTGGATCCCGGTTGT 61.885 60.000 9.90 3.42 0.00 3.32
634 2173 1.895020 TTTGGACGAGTGGATCCCGG 61.895 60.000 9.90 0.00 33.69 5.73
636 2175 1.475213 GGATTTGGACGAGTGGATCCC 60.475 57.143 9.90 0.11 33.69 3.85
637 2176 1.209504 TGGATTTGGACGAGTGGATCC 59.790 52.381 4.20 4.20 34.91 3.36
638 2177 2.280628 GTGGATTTGGACGAGTGGATC 58.719 52.381 0.00 0.00 0.00 3.36
639 2178 1.405526 CGTGGATTTGGACGAGTGGAT 60.406 52.381 0.00 0.00 37.81 3.41
640 2179 0.037697 CGTGGATTTGGACGAGTGGA 60.038 55.000 0.00 0.00 37.81 4.02
641 2180 0.037697 TCGTGGATTTGGACGAGTGG 60.038 55.000 0.00 0.00 39.59 4.00
642 2181 1.660607 CATCGTGGATTTGGACGAGTG 59.339 52.381 0.00 0.00 46.91 3.51
643 2182 2.007049 GCATCGTGGATTTGGACGAGT 61.007 52.381 0.00 0.00 46.91 4.18
644 2183 0.652592 GCATCGTGGATTTGGACGAG 59.347 55.000 0.00 0.00 46.91 4.18
646 2185 0.096976 GTGCATCGTGGATTTGGACG 59.903 55.000 0.00 0.00 36.91 4.79
647 2186 0.451783 GGTGCATCGTGGATTTGGAC 59.548 55.000 0.00 0.00 0.00 4.02
648 2187 0.037447 TGGTGCATCGTGGATTTGGA 59.963 50.000 0.00 0.00 0.00 3.53
649 2188 0.887247 TTGGTGCATCGTGGATTTGG 59.113 50.000 0.00 0.00 0.00 3.28
650 2189 2.228582 TCTTTGGTGCATCGTGGATTTG 59.771 45.455 0.00 0.00 0.00 2.32
651 2190 2.489329 CTCTTTGGTGCATCGTGGATTT 59.511 45.455 0.00 0.00 0.00 2.17
685 2224 7.222161 TCTAAAGATACTATACTCGTGGCTCA 58.778 38.462 0.00 0.00 0.00 4.26
898 2442 2.229784 CTCAACAGGCCAGCTTTTTAGG 59.770 50.000 5.01 0.00 0.00 2.69
932 2476 1.081641 CTGCTTTGCTTCGCTGGTG 60.082 57.895 0.00 0.00 0.00 4.17
936 2480 1.575576 CTGCTCTGCTTTGCTTCGCT 61.576 55.000 0.00 0.00 0.00 4.93
937 2481 1.154263 CTGCTCTGCTTTGCTTCGC 60.154 57.895 0.00 0.00 0.00 4.70
942 2486 0.954449 TCTGCTCTGCTCTGCTTTGC 60.954 55.000 0.00 0.00 0.00 3.68
944 2488 0.975135 TCTCTGCTCTGCTCTGCTTT 59.025 50.000 0.00 0.00 0.00 3.51
964 2513 2.358898 TCTTTCTTGTTGCCAGTTGAGC 59.641 45.455 0.00 0.00 0.00 4.26
968 2517 4.156455 TCTCTCTTTCTTGTTGCCAGTT 57.844 40.909 0.00 0.00 0.00 3.16
1283 2832 2.223135 GCTTAGCAAGACGCAAGATTCC 60.223 50.000 0.00 0.00 46.13 3.01
1304 2853 4.277515 TCCTCTGAGACAAACCAGAATG 57.722 45.455 6.17 0.00 38.75 2.67
1452 3050 6.732154 ACGTACGTACAAGATGTTATATGCT 58.268 36.000 21.41 0.00 0.00 3.79
1474 3073 0.110823 GCTTGTGCTGAAACCGTACG 60.111 55.000 8.69 8.69 36.03 3.67
1477 3076 1.029408 TGTGCTTGTGCTGAAACCGT 61.029 50.000 0.00 0.00 40.48 4.83
1508 3107 1.602377 CCCTGAAACCAGACGTCAAAC 59.398 52.381 19.50 3.53 33.56 2.93
1509 3108 1.961793 CCCTGAAACCAGACGTCAAA 58.038 50.000 19.50 0.00 33.56 2.69
1510 3109 0.534203 GCCCTGAAACCAGACGTCAA 60.534 55.000 19.50 0.00 33.56 3.18
1511 3110 1.070786 GCCCTGAAACCAGACGTCA 59.929 57.895 19.50 0.00 33.56 4.35
1512 3111 1.671379 GGCCCTGAAACCAGACGTC 60.671 63.158 7.70 7.70 33.56 4.34
1513 3112 2.430367 GGCCCTGAAACCAGACGT 59.570 61.111 0.00 0.00 33.56 4.34
1514 3113 2.359975 GGGCCCTGAAACCAGACG 60.360 66.667 17.04 0.00 33.56 4.18
1515 3114 2.359975 CGGGCCCTGAAACCAGAC 60.360 66.667 22.43 0.00 33.56 3.51
1516 3115 3.646715 CCGGGCCCTGAAACCAGA 61.647 66.667 22.43 0.00 33.56 3.86
1517 3116 4.740822 CCCGGGCCCTGAAACCAG 62.741 72.222 22.43 0.22 0.00 4.00
1530 3129 1.226888 GTAGTAGAACAGCGCCCGG 60.227 63.158 2.29 0.00 0.00 5.73
1535 3134 3.192844 TCCTTTCAGGTAGTAGAACAGCG 59.807 47.826 0.00 0.00 36.53 5.18
1651 3250 5.013913 CAGACCAAGGGATAATGGATGATCT 59.986 44.000 0.00 0.00 0.00 2.75
1913 3558 3.426695 CCTGAGGTTTTCATGCGTGATTC 60.427 47.826 9.96 3.44 34.68 2.52
1919 3564 3.728864 CGAATTCCTGAGGTTTTCATGCG 60.729 47.826 13.64 1.84 34.68 4.73
1981 3627 7.441760 TCACTGCGTAATTTTGTAGAACCTTTA 59.558 33.333 2.54 0.00 0.00 1.85
1982 3628 6.261381 TCACTGCGTAATTTTGTAGAACCTTT 59.739 34.615 2.54 0.00 0.00 3.11
1983 3629 5.761234 TCACTGCGTAATTTTGTAGAACCTT 59.239 36.000 2.54 0.00 0.00 3.50
1984 3630 5.302360 TCACTGCGTAATTTTGTAGAACCT 58.698 37.500 2.54 0.00 0.00 3.50
2079 3725 8.182227 CGATCTGAACACACTAGTATGTAAAGA 58.818 37.037 16.77 16.77 0.00 2.52
2080 3726 7.432545 CCGATCTGAACACACTAGTATGTAAAG 59.567 40.741 7.33 8.35 0.00 1.85
2087 3733 3.086282 TGCCGATCTGAACACACTAGTA 58.914 45.455 0.00 0.00 0.00 1.82
2124 3770 5.656480 GTGGTTCACCCGCAAAATAATAAT 58.344 37.500 0.00 0.00 43.67 1.28
2125 3771 5.061920 GTGGTTCACCCGCAAAATAATAA 57.938 39.130 0.00 0.00 43.67 1.40
2126 3772 4.705337 GTGGTTCACCCGCAAAATAATA 57.295 40.909 0.00 0.00 43.67 0.98
2127 3773 3.586100 GTGGTTCACCCGCAAAATAAT 57.414 42.857 0.00 0.00 43.67 1.28
2139 3785 2.586648 AAATCAGGGAGGTGGTTCAC 57.413 50.000 0.00 0.00 0.00 3.18
2140 3786 3.561313 GCTAAAATCAGGGAGGTGGTTCA 60.561 47.826 0.00 0.00 0.00 3.18
2141 3787 3.017442 GCTAAAATCAGGGAGGTGGTTC 58.983 50.000 0.00 0.00 0.00 3.62
2142 3788 2.649816 AGCTAAAATCAGGGAGGTGGTT 59.350 45.455 0.00 0.00 0.00 3.67
2143 3789 2.279173 AGCTAAAATCAGGGAGGTGGT 58.721 47.619 0.00 0.00 0.00 4.16
2144 3790 3.741388 CGTAGCTAAAATCAGGGAGGTGG 60.741 52.174 0.00 0.00 0.00 4.61
2145 3791 3.132289 TCGTAGCTAAAATCAGGGAGGTG 59.868 47.826 0.00 0.00 0.00 4.00
2146 3792 3.371965 TCGTAGCTAAAATCAGGGAGGT 58.628 45.455 0.00 0.00 0.00 3.85
2147 3793 4.608948 ATCGTAGCTAAAATCAGGGAGG 57.391 45.455 0.00 0.00 0.00 4.30
2148 3794 6.814146 GGATTATCGTAGCTAAAATCAGGGAG 59.186 42.308 15.59 0.00 0.00 4.30
2149 3795 6.497259 AGGATTATCGTAGCTAAAATCAGGGA 59.503 38.462 15.59 0.00 0.00 4.20
2150 3796 6.702329 AGGATTATCGTAGCTAAAATCAGGG 58.298 40.000 15.59 0.00 0.00 4.45
2151 3797 8.304596 TGTAGGATTATCGTAGCTAAAATCAGG 58.695 37.037 15.59 0.00 0.00 3.86
2152 3798 9.130312 GTGTAGGATTATCGTAGCTAAAATCAG 57.870 37.037 15.59 0.00 0.00 2.90
2153 3799 8.086522 GGTGTAGGATTATCGTAGCTAAAATCA 58.913 37.037 15.59 0.00 0.00 2.57
2154 3800 8.086522 TGGTGTAGGATTATCGTAGCTAAAATC 58.913 37.037 0.00 3.21 0.00 2.17
2155 3801 7.959175 TGGTGTAGGATTATCGTAGCTAAAAT 58.041 34.615 0.00 0.00 0.00 1.82
2156 3802 7.350744 TGGTGTAGGATTATCGTAGCTAAAA 57.649 36.000 0.00 0.00 0.00 1.52
2157 3803 6.964807 TGGTGTAGGATTATCGTAGCTAAA 57.035 37.500 0.00 0.00 0.00 1.85
2185 3831 1.321074 AAGAGGTCTTCGTAGCGGGG 61.321 60.000 0.00 0.00 0.00 5.73
2209 3859 6.039829 AGCCATAAAAGCTTCTAAATAGGTGC 59.960 38.462 0.00 0.00 37.24 5.01
2210 3860 7.573968 AGCCATAAAAGCTTCTAAATAGGTG 57.426 36.000 0.00 0.00 37.24 4.00
2222 3872 4.953940 TGTCCAAAAAGCCATAAAAGCT 57.046 36.364 0.00 0.00 44.19 3.74
2223 3873 6.370433 TTTTGTCCAAAAAGCCATAAAAGC 57.630 33.333 2.82 0.00 37.35 3.51
2249 3899 7.665561 TTTGCTTCTGCTTTTGTAACTTTTT 57.334 28.000 0.00 0.00 40.48 1.94
2250 3900 7.624134 GCTTTTGCTTCTGCTTTTGTAACTTTT 60.624 33.333 0.00 0.00 43.35 2.27
2251 3901 6.183360 GCTTTTGCTTCTGCTTTTGTAACTTT 60.183 34.615 0.00 0.00 43.35 2.66
2252 3902 5.291858 GCTTTTGCTTCTGCTTTTGTAACTT 59.708 36.000 0.00 0.00 43.35 2.66
2253 3903 4.805719 GCTTTTGCTTCTGCTTTTGTAACT 59.194 37.500 0.00 0.00 43.35 2.24
2254 3904 4.025730 GGCTTTTGCTTCTGCTTTTGTAAC 60.026 41.667 0.00 0.00 46.54 2.50
2255 3905 4.119136 GGCTTTTGCTTCTGCTTTTGTAA 58.881 39.130 0.00 0.00 46.54 2.41
2256 3906 3.492482 GGGCTTTTGCTTCTGCTTTTGTA 60.492 43.478 0.00 0.00 46.54 2.41
2257 3907 2.554142 GGCTTTTGCTTCTGCTTTTGT 58.446 42.857 0.00 0.00 46.54 2.83
2258 3908 1.869132 GGGCTTTTGCTTCTGCTTTTG 59.131 47.619 0.00 0.00 46.54 2.44
2259 3909 1.485895 TGGGCTTTTGCTTCTGCTTTT 59.514 42.857 0.00 0.00 46.54 2.27
2260 3910 1.122227 TGGGCTTTTGCTTCTGCTTT 58.878 45.000 0.00 0.00 46.54 3.51
2261 3911 1.122227 TTGGGCTTTTGCTTCTGCTT 58.878 45.000 0.00 0.00 46.54 3.91
2262 3912 1.122227 TTTGGGCTTTTGCTTCTGCT 58.878 45.000 0.00 0.00 46.54 4.24
2263 3913 1.220529 GTTTGGGCTTTTGCTTCTGC 58.779 50.000 0.00 0.00 46.54 4.26
2264 3914 2.600470 TGTTTGGGCTTTTGCTTCTG 57.400 45.000 0.00 0.00 46.54 3.02
2265 3915 3.270027 GTTTGTTTGGGCTTTTGCTTCT 58.730 40.909 0.00 0.00 46.54 2.85
2266 3916 3.006247 TGTTTGTTTGGGCTTTTGCTTC 58.994 40.909 0.00 0.00 46.54 3.86
2267 3917 3.009026 CTGTTTGTTTGGGCTTTTGCTT 58.991 40.909 0.00 0.00 46.54 3.91
2268 3918 2.631267 CTGTTTGTTTGGGCTTTTGCT 58.369 42.857 0.00 0.00 46.54 3.91
2269 3919 1.670295 CCTGTTTGTTTGGGCTTTTGC 59.330 47.619 0.00 0.00 46.64 3.68
2270 3920 2.287769 CCCTGTTTGTTTGGGCTTTTG 58.712 47.619 0.00 0.00 33.88 2.44
2271 3921 2.708216 CCCTGTTTGTTTGGGCTTTT 57.292 45.000 0.00 0.00 33.88 2.27
2276 3926 0.758685 TGAGGCCCTGTTTGTTTGGG 60.759 55.000 0.00 0.00 43.62 4.12
2277 3927 0.675633 CTGAGGCCCTGTTTGTTTGG 59.324 55.000 0.00 0.00 0.00 3.28
2278 3928 0.032540 GCTGAGGCCCTGTTTGTTTG 59.967 55.000 0.00 0.00 0.00 2.93
2279 3929 0.106015 AGCTGAGGCCCTGTTTGTTT 60.106 50.000 0.00 0.00 39.73 2.83
2280 3930 0.771127 TAGCTGAGGCCCTGTTTGTT 59.229 50.000 0.00 0.00 39.73 2.83
2281 3931 0.995024 ATAGCTGAGGCCCTGTTTGT 59.005 50.000 0.00 0.00 39.73 2.83
2282 3932 1.211457 AGATAGCTGAGGCCCTGTTTG 59.789 52.381 0.00 0.00 39.73 2.93
2283 3933 1.211457 CAGATAGCTGAGGCCCTGTTT 59.789 52.381 0.40 0.00 45.17 2.83
2284 3934 0.835941 CAGATAGCTGAGGCCCTGTT 59.164 55.000 0.40 0.00 45.17 3.16
2285 3935 1.694133 GCAGATAGCTGAGGCCCTGT 61.694 60.000 13.26 0.00 45.17 4.00
2286 3936 1.071128 GCAGATAGCTGAGGCCCTG 59.929 63.158 13.26 0.00 45.17 4.45
2287 3937 3.560989 GCAGATAGCTGAGGCCCT 58.439 61.111 13.26 0.00 45.17 5.19
2296 3946 3.060602 GTTCATTCCGGTAGCAGATAGC 58.939 50.000 0.00 0.00 46.19 2.97
2378 4032 6.677187 GCGATTATTCCCTTTCTTTTAAGCGT 60.677 38.462 0.00 0.00 32.79 5.07
2400 4054 0.750850 GGATACTGCCCTTAGTGCGA 59.249 55.000 0.00 0.00 32.19 5.10
2457 4111 1.084370 AGTAGCTCACGAATTGGCGC 61.084 55.000 0.00 0.00 33.86 6.53
2458 4112 1.061131 CAAGTAGCTCACGAATTGGCG 59.939 52.381 0.00 0.00 37.29 5.69
2459 4113 2.346803 TCAAGTAGCTCACGAATTGGC 58.653 47.619 0.00 0.00 29.05 4.52
2541 5444 5.578336 TGCTAGTGCTATATTCGATGATTGC 59.422 40.000 6.56 6.56 40.48 3.56
2612 5515 5.032863 GCAAGATTGAAATCAACTCCGATG 58.967 41.667 5.86 0.00 38.86 3.84
2613 5516 4.946157 AGCAAGATTGAAATCAACTCCGAT 59.054 37.500 5.86 0.00 38.86 4.18
2650 5553 9.829507 AGTAAGATTTGGAATGAATCTAGTCTG 57.170 33.333 0.29 0.00 41.66 3.51
2651 5554 9.829507 CAGTAAGATTTGGAATGAATCTAGTCT 57.170 33.333 0.29 0.00 41.66 3.24
2745 5656 8.995027 ACCCATGATTAAGCACATAATCTAAA 57.005 30.769 0.00 0.82 41.05 1.85
2748 5659 7.448469 GGTTACCCATGATTAAGCACATAATCT 59.552 37.037 0.00 2.01 41.05 2.40
2749 5660 7.448469 AGGTTACCCATGATTAAGCACATAATC 59.552 37.037 14.24 8.96 40.91 1.75
2751 5662 6.668645 AGGTTACCCATGATTAAGCACATAA 58.331 36.000 14.24 0.00 0.00 1.90
2753 5664 5.129368 AGGTTACCCATGATTAAGCACAT 57.871 39.130 14.24 0.00 0.00 3.21
2754 5665 4.584638 AGGTTACCCATGATTAAGCACA 57.415 40.909 14.24 0.00 0.00 4.57
2755 5666 4.338400 GGAAGGTTACCCATGATTAAGCAC 59.662 45.833 14.24 9.39 0.00 4.40
2756 5667 4.532834 GGAAGGTTACCCATGATTAAGCA 58.467 43.478 14.24 0.00 0.00 3.91
2757 5668 3.889538 GGGAAGGTTACCCATGATTAAGC 59.110 47.826 0.00 0.79 46.05 3.09
2792 5841 2.398554 CGTGAACATCAAGGGGCGG 61.399 63.158 0.00 0.00 0.00 6.13
2794 5843 3.590824 CCGTGAACATCAAGGGGC 58.409 61.111 4.64 0.00 41.43 5.80
2799 5848 1.074072 CCACCCCCGTGAACATCAA 59.926 57.895 0.00 0.00 43.14 2.57
2998 6052 2.135933 CCGCTCGAAAAAGAAGACTGT 58.864 47.619 0.00 0.00 0.00 3.55
3021 6075 9.865321 ACAACGTGTTTATTAGACTACACATAT 57.135 29.630 0.00 0.00 40.59 1.78
3024 6078 7.201835 TGACAACGTGTTTATTAGACTACACA 58.798 34.615 0.00 0.00 40.59 3.72
3077 6131 3.011566 TCTCCTCTCTTCGAGCAATCT 57.988 47.619 0.00 0.00 38.49 2.40
3084 6138 3.147629 ACGAACTTTCTCCTCTCTTCGA 58.852 45.455 4.74 0.00 35.59 3.71
3085 6139 3.562567 ACGAACTTTCTCCTCTCTTCG 57.437 47.619 0.00 0.00 37.21 3.79
3098 6152 1.478916 CCCAACAACCCAAACGAACTT 59.521 47.619 0.00 0.00 0.00 2.66
3099 6153 1.107945 CCCAACAACCCAAACGAACT 58.892 50.000 0.00 0.00 0.00 3.01
3103 6157 1.455959 TCCCCCAACAACCCAAACG 60.456 57.895 0.00 0.00 0.00 3.60
3107 6161 1.289982 TTGTCTCCCCCAACAACCCA 61.290 55.000 0.00 0.00 30.73 4.51
3129 6183 0.379316 TGCATGCATGATTCTCACGC 59.621 50.000 30.64 11.74 35.94 5.34
3159 6213 1.317613 AAACGTGCATGTGATGTGGT 58.682 45.000 13.39 0.00 0.00 4.16
3187 6241 2.509131 TCATATGGGTGAGAACATGGCA 59.491 45.455 2.13 0.00 0.00 4.92
3194 6248 3.118445 TCGTGCATTCATATGGGTGAGAA 60.118 43.478 2.13 0.00 32.15 2.87
3197 6251 2.433970 TCTCGTGCATTCATATGGGTGA 59.566 45.455 2.13 0.00 32.15 4.02
3271 7409 0.304098 GATTGTGCAGAGCAGATCGC 59.696 55.000 0.00 1.92 40.08 4.58
3367 7513 1.514087 GTACCCGTCGAATGCCTGA 59.486 57.895 0.00 0.00 0.00 3.86
3376 7522 1.154150 GGTGTTCTCGTACCCGTCG 60.154 63.158 0.00 0.00 35.01 5.12
3410 7556 2.574399 GAGGGAGGTGACGCTCAC 59.426 66.667 8.94 8.94 46.23 3.51
3490 7636 1.971357 ACTACCCGATCCCATCATGAC 59.029 52.381 0.00 0.00 0.00 3.06
3494 7640 0.031515 ACCACTACCCGATCCCATCA 60.032 55.000 0.00 0.00 0.00 3.07
3596 7749 3.713858 TTTCGACTTTGGTACGTCTCA 57.286 42.857 0.00 0.00 0.00 3.27
3597 7750 5.630680 TGTATTTTCGACTTTGGTACGTCTC 59.369 40.000 0.00 0.00 0.00 3.36
3598 7751 5.531634 TGTATTTTCGACTTTGGTACGTCT 58.468 37.500 0.00 0.00 0.00 4.18
3688 7844 7.413109 GCTGACCTAAAATTTTAGACTTCTCCG 60.413 40.741 30.86 17.68 42.05 4.63
3922 8078 4.035112 AGTAAACCCACGGAGGAATATCA 58.965 43.478 0.00 0.00 41.22 2.15
3925 8081 6.371595 TTTTAGTAAACCCACGGAGGAATA 57.628 37.500 0.00 0.00 41.22 1.75
3934 8090 5.191426 GGAGGGAGATTTTAGTAAACCCAC 58.809 45.833 17.15 12.35 38.42 4.61
4016 8172 8.134895 CCACGCACACCTTTATGAATAATAAAT 58.865 33.333 0.00 0.00 39.46 1.40
4017 8173 7.337184 TCCACGCACACCTTTATGAATAATAAA 59.663 33.333 0.00 0.00 38.21 1.40
4018 8174 6.824196 TCCACGCACACCTTTATGAATAATAA 59.176 34.615 0.00 0.00 0.00 1.40
4020 8176 5.065988 GTCCACGCACACCTTTATGAATAAT 59.934 40.000 0.00 0.00 0.00 1.28
4021 8177 4.393680 GTCCACGCACACCTTTATGAATAA 59.606 41.667 0.00 0.00 0.00 1.40
4022 8178 3.936453 GTCCACGCACACCTTTATGAATA 59.064 43.478 0.00 0.00 0.00 1.75
4023 8179 2.747446 GTCCACGCACACCTTTATGAAT 59.253 45.455 0.00 0.00 0.00 2.57
4095 8251 3.788333 ATGTTGCTGCACCAATACATC 57.212 42.857 3.41 0.00 0.00 3.06
4174 8330 1.639722 TAGCCTGACTTGGTGCTGTA 58.360 50.000 0.00 0.00 35.34 2.74
4175 8331 0.764890 TTAGCCTGACTTGGTGCTGT 59.235 50.000 0.00 0.00 35.34 4.40
4176 8332 2.119801 ATTAGCCTGACTTGGTGCTG 57.880 50.000 0.00 0.00 35.34 4.41
4316 8476 6.771934 TTGTGGGTCCATAATCATACCATA 57.228 37.500 0.00 0.00 33.46 2.74
4317 8477 5.661503 TTGTGGGTCCATAATCATACCAT 57.338 39.130 0.00 0.00 33.46 3.55
4363 8523 3.716195 CCATCAGTCCCCCGCACA 61.716 66.667 0.00 0.00 0.00 4.57
4364 8524 2.478335 TTTCCATCAGTCCCCCGCAC 62.478 60.000 0.00 0.00 0.00 5.34
4366 8526 0.395724 ATTTTCCATCAGTCCCCCGC 60.396 55.000 0.00 0.00 0.00 6.13
4383 8548 2.383338 GGGGATCATGGGGATTGGTATT 59.617 50.000 0.00 0.00 36.00 1.89
4414 8579 5.895636 TTATGAAACGAAGGGAGTACGTA 57.104 39.130 0.00 0.00 39.31 3.57
4415 8580 4.789012 TTATGAAACGAAGGGAGTACGT 57.211 40.909 0.00 0.00 41.97 3.57
4416 8581 7.941795 ATTATTATGAAACGAAGGGAGTACG 57.058 36.000 0.00 0.00 0.00 3.67
4469 8634 8.128016 AGTAGAGTTTGTCAAACGTAAGAAAG 57.872 34.615 20.04 0.00 45.88 2.62
4594 8762 9.016438 AGTTAAAGTTGTTTAAGTCTGACCAAA 57.984 29.630 3.76 2.79 37.24 3.28
4613 8781 3.810310 TGGGTTTGCCACAAGTTAAAG 57.190 42.857 0.00 0.00 36.17 1.85
4648 8816 5.927281 TCAAAAGTACTACCGCTATTCCT 57.073 39.130 0.00 0.00 0.00 3.36
4654 8822 6.202954 GCATATTGATCAAAAGTACTACCGCT 59.797 38.462 13.09 0.00 0.00 5.52
4656 8824 7.477144 TGCATATTGATCAAAAGTACTACCG 57.523 36.000 13.09 0.00 0.00 4.02
4671 8910 7.611467 GGTGAGATAATTGGGTATGCATATTGA 59.389 37.037 10.16 0.00 0.00 2.57
4687 8926 3.689649 GCGACAAGTTTGGGTGAGATAAT 59.310 43.478 0.00 0.00 0.00 1.28
4688 8927 3.071479 GCGACAAGTTTGGGTGAGATAA 58.929 45.455 0.00 0.00 0.00 1.75
4689 8928 2.301870 AGCGACAAGTTTGGGTGAGATA 59.698 45.455 0.00 0.00 0.00 1.98
4719 8965 2.634600 TGTTACCCGATTATGTGTGGC 58.365 47.619 0.00 0.00 0.00 5.01
4730 8976 4.223255 TGACAATGGATACTTGTTACCCGA 59.777 41.667 0.00 0.00 37.82 5.14
4738 8984 8.680001 TGAAATCAAGATGACAATGGATACTTG 58.320 33.333 0.00 0.00 35.90 3.16
4740 8986 8.991783 ATGAAATCAAGATGACAATGGATACT 57.008 30.769 0.00 0.00 37.61 2.12
4749 8995 9.623000 AGATGAATGTATGAAATCAAGATGACA 57.377 29.630 0.00 0.00 0.00 3.58
4768 9014 3.159298 GTGGTGCCACGAGATGAAT 57.841 52.632 5.53 0.00 37.19 2.57
4802 9048 6.070995 ACGACACTATTTGAATAGAGGACCAA 60.071 38.462 15.66 0.00 40.63 3.67
4863 9109 2.048127 GCGAGGCAGACGAACCTT 60.048 61.111 0.00 0.00 36.05 3.50
4866 9112 4.373116 TGGGCGAGGCAGACGAAC 62.373 66.667 0.00 0.00 0.00 3.95
4937 9183 1.298190 CCGAAGTCGTAGTAGCGCC 60.298 63.158 2.29 0.00 37.74 6.53
5031 9277 2.915659 TCTCCTGTGGCGAACGGT 60.916 61.111 0.00 0.00 32.74 4.83
5109 9355 3.005472 TGAAGTAGAACGTGTCAGGGAAG 59.995 47.826 0.00 0.00 0.00 3.46
5187 9433 3.244875 ACACAAGAGGGTGAATGTGCATA 60.245 43.478 4.78 0.00 45.36 3.14
5217 9463 1.221466 ACCGACACAACTGCATGACG 61.221 55.000 0.00 3.46 0.00 4.35
5279 9525 6.328934 TCCAAATGTACCATCTAAGATGGCTA 59.671 38.462 16.59 8.90 42.82 3.93
5427 9678 8.099537 GGATGTGTCATGGAGATAGTATTCAAT 58.900 37.037 0.00 0.00 0.00 2.57
5433 9684 4.762251 CGAGGATGTGTCATGGAGATAGTA 59.238 45.833 0.00 0.00 0.00 1.82
5436 9687 2.893489 CCGAGGATGTGTCATGGAGATA 59.107 50.000 0.00 0.00 0.00 1.98
5472 9723 0.312416 CCTCTACGAAGATGCTCGGG 59.688 60.000 0.00 0.00 43.22 5.14
5484 9735 2.989840 GCAATCCGAATCATCCTCTACG 59.010 50.000 0.00 0.00 0.00 3.51
5499 9750 2.562298 TGGTTGAAGTTGATGGCAATCC 59.438 45.455 0.00 0.00 36.22 3.01
5630 9894 9.884465 CTTTCTGTAGAAAATAGAACAAGGTTG 57.116 33.333 8.28 0.00 42.72 3.77
5671 9935 8.378172 TGTAGAAAGTAGAACATGGTTTTCAG 57.622 34.615 8.06 0.00 0.00 3.02
5680 9944 6.870965 CACTGCTTCTGTAGAAAGTAGAACAT 59.129 38.462 7.77 0.00 33.07 2.71
5853 10146 9.656040 AAATTTCATAAAGCTTATGCACATTGA 57.344 25.926 0.00 0.00 42.74 2.57
5914 10207 3.076621 TGCATTGCCACAACAACAAAAA 58.923 36.364 6.12 0.00 31.03 1.94
5919 10212 2.278854 AGTTTGCATTGCCACAACAAC 58.721 42.857 6.12 0.34 31.03 3.32
5920 10213 2.093816 TGAGTTTGCATTGCCACAACAA 60.094 40.909 6.12 0.00 0.00 2.83
5996 10289 1.398390 GATCGAATTGCACGCTTCCTT 59.602 47.619 0.00 0.00 0.00 3.36
6001 10294 1.945387 ATGAGATCGAATTGCACGCT 58.055 45.000 0.00 0.00 0.00 5.07
6088 10381 6.164176 AGATGTTAACCTAGGTCGAGTTTTG 58.836 40.000 16.64 0.00 0.00 2.44
6131 10424 8.450578 AATTGTACACCCAGTATCATGTATTG 57.549 34.615 0.00 0.00 34.67 1.90
6143 10436 6.293955 CCAAGTTGTAGAAATTGTACACCCAG 60.294 42.308 11.24 0.00 35.77 4.45
6202 10495 9.734620 AAAACATATATTGCACACATATCACAC 57.265 29.630 0.00 0.00 0.00 3.82
6245 10539 3.302221 CCGTGTTGAAAAGTACGTGTGAG 60.302 47.826 0.00 0.00 36.30 3.51
6256 10550 0.841289 AGAGGGGTCCGTGTTGAAAA 59.159 50.000 0.00 0.00 0.00 2.29
6283 10577 9.418045 CCGATGTTTTTATTTCTTTGGTTGTAT 57.582 29.630 0.00 0.00 0.00 2.29
6305 10609 0.459585 CCGACGATGGTGTTTCCGAT 60.460 55.000 0.00 0.00 39.52 4.18
6320 10624 2.689646 CTCTGGAAGGAAAAGACCGAC 58.310 52.381 0.00 0.00 34.73 4.79
6351 10655 6.565811 GCATATTCAAAAGTGACACAAGACGA 60.566 38.462 8.59 0.00 31.90 4.20
6352 10656 5.565259 GCATATTCAAAAGTGACACAAGACG 59.435 40.000 8.59 0.00 31.90 4.18
6361 10665 7.829725 AGCTAAACATGCATATTCAAAAGTGA 58.170 30.769 0.00 0.00 0.00 3.41
6418 10722 4.202111 GCCTAAGTGTTTTGGTGTTGATGT 60.202 41.667 0.00 0.00 32.56 3.06
6460 10764 1.128200 TGGAGGGATGGGTGTTATCG 58.872 55.000 0.00 0.00 0.00 2.92
6482 10786 2.569404 CCTTGGAGGAAAGCTAGTCACT 59.431 50.000 0.00 0.00 37.67 3.41
6483 10787 2.567615 TCCTTGGAGGAAAGCTAGTCAC 59.432 50.000 0.00 0.00 42.51 3.67
6533 10837 2.127271 TAGGGATAACCGACGACACA 57.873 50.000 0.00 0.00 46.96 3.72
6564 10868 5.014202 AGTGACCAAAGTAAACCACAAGTT 58.986 37.500 0.00 0.00 41.81 2.66
6565 10869 4.595986 AGTGACCAAAGTAAACCACAAGT 58.404 39.130 0.00 0.00 0.00 3.16
6588 10892 6.247727 ACATGTTACAATAAATGCACGTCA 57.752 33.333 0.00 0.00 0.00 4.35
6665 10969 2.959516 TCGGCAATGCGGAATATAGAG 58.040 47.619 13.11 0.00 35.08 2.43
6676 10980 6.917477 TGAATATTATGAAGTTTCGGCAATGC 59.083 34.615 0.00 0.00 0.00 3.56
6743 11047 4.492494 AAATTGAAAGGATTGGGATGGC 57.508 40.909 0.00 0.00 0.00 4.40
6753 11057 7.610305 ACGAGGCTCTAATAAAAATTGAAAGGA 59.390 33.333 13.50 0.00 0.00 3.36
6818 11122 0.329261 TTGCACATCCCTCTTCCCAG 59.671 55.000 0.00 0.00 0.00 4.45
6822 11126 3.118261 TGGTATCTTGCACATCCCTCTTC 60.118 47.826 0.00 0.00 0.00 2.87
6831 11135 2.819019 CACATGGTTGGTATCTTGCACA 59.181 45.455 0.00 0.00 0.00 4.57
6847 11151 3.328505 GGAATCCAAAAAGTGCCACATG 58.671 45.455 0.00 0.00 0.00 3.21
6848 11152 2.029110 CGGAATCCAAAAAGTGCCACAT 60.029 45.455 0.00 0.00 0.00 3.21
6855 11159 3.839778 TCCTTTCCGGAATCCAAAAAGT 58.160 40.909 19.62 0.00 39.40 2.66
6946 11250 1.600058 TGATCTTCAATCCAGGGGCT 58.400 50.000 0.00 0.00 0.00 5.19
6980 11284 0.169009 CTTGCAAGCCTTTCCGCTAC 59.831 55.000 14.65 0.00 38.44 3.58
6990 11294 2.203480 TCCCACCACTTGCAAGCC 60.203 61.111 26.27 0.00 0.00 4.35
7034 11338 0.321996 GGCGGACTTTCCTTCACTCT 59.678 55.000 0.00 0.00 33.30 3.24
7035 11339 1.014564 CGGCGGACTTTCCTTCACTC 61.015 60.000 0.00 0.00 33.30 3.51
7054 11358 2.999355 GGAGAGCACTTGTTGAGTCATC 59.001 50.000 0.00 0.00 36.10 2.92
7061 11365 2.810852 GAGGAAAGGAGAGCACTTGTTG 59.189 50.000 0.00 0.00 0.00 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.