Multiple sequence alignment - TraesCS3D01G393100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G393100 chr3D 100.000 2816 0 0 1 2816 508379832 508382647 0.000000e+00 5201.0
1 TraesCS3D01G393100 chr3B 90.010 2072 108 40 758 2763 671014876 671016914 0.000000e+00 2588.0
2 TraesCS3D01G393100 chr3B 80.247 405 56 11 1852 2234 671016403 671016805 1.650000e-72 283.0
3 TraesCS3D01G393100 chr3B 89.000 200 20 1 758 957 670539569 670539766 2.170000e-61 246.0
4 TraesCS3D01G393100 chr3B 94.340 53 3 0 668 720 671014758 671014810 6.470000e-12 82.4
5 TraesCS3D01G393100 chr3B 100.000 30 0 0 2758 2787 606575207 606575178 3.920000e-04 56.5
6 TraesCS3D01G393100 chr3A 93.396 1711 76 16 760 2435 646125096 646126804 0.000000e+00 2499.0
7 TraesCS3D01G393100 chr3A 89.583 432 37 8 206 632 219342939 219342511 2.470000e-150 542.0
8 TraesCS3D01G393100 chr3A 89.583 432 37 8 206 632 334784960 334784532 2.470000e-150 542.0
9 TraesCS3D01G393100 chr3A 89.241 316 9 11 2469 2763 646126913 646127224 3.430000e-99 372.0
10 TraesCS3D01G393100 chr3A 84.615 195 28 1 2050 2242 646126929 646127123 2.860000e-45 193.0
11 TraesCS3D01G393100 chr3A 81.667 120 9 7 654 760 646124954 646125073 1.390000e-13 87.9
12 TraesCS3D01G393100 chr7D 90.826 436 40 0 194 629 548615934 548616369 4.040000e-163 584.0
13 TraesCS3D01G393100 chr4A 89.744 429 36 8 206 629 403171754 403172179 2.470000e-150 542.0
14 TraesCS3D01G393100 chr4A 89.486 428 39 6 206 629 304782099 304782524 1.150000e-148 536.0
15 TraesCS3D01G393100 chr4A 86.957 460 56 4 206 665 687331242 687330787 5.380000e-142 514.0
16 TraesCS3D01G393100 chr2B 89.744 429 36 8 206 629 702727993 702728418 2.470000e-150 542.0
17 TraesCS3D01G393100 chr2B 88.170 448 42 9 207 650 98393778 98394218 8.940000e-145 523.0
18 TraesCS3D01G393100 chr5B 89.171 434 37 9 204 632 61558979 61558551 1.490000e-147 532.0
19 TraesCS3D01G393100 chr5A 88.525 61 2 2 2761 2816 23817591 23817531 5.030000e-08 69.4
20 TraesCS3D01G393100 chr1B 87.097 62 3 2 2757 2813 652294039 652293978 6.510000e-07 65.8
21 TraesCS3D01G393100 chr1A 83.824 68 3 2 2753 2813 60284305 60284371 1.090000e-04 58.4
22 TraesCS3D01G393100 chr1A 100.000 29 0 0 2761 2789 56623267 56623295 1.000000e-03 54.7
23 TraesCS3D01G393100 chr5D 94.444 36 2 0 2754 2789 52247582 52247617 3.920000e-04 56.5
24 TraesCS3D01G393100 chr7B 100.000 29 0 0 2761 2789 746315402 746315374 1.000000e-03 54.7
25 TraesCS3D01G393100 chr2A 94.444 36 1 1 2754 2789 55567879 55567913 1.000000e-03 54.7
26 TraesCS3D01G393100 chr1D 100.000 29 0 0 2761 2789 57502409 57502437 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G393100 chr3D 508379832 508382647 2815 False 5201.000000 5201 100.00000 1 2816 1 chr3D.!!$F1 2815
1 TraesCS3D01G393100 chr3B 671014758 671016914 2156 False 984.466667 2588 88.19900 668 2763 3 chr3B.!!$F2 2095
2 TraesCS3D01G393100 chr3A 646124954 646127224 2270 False 787.975000 2499 87.22975 654 2763 4 chr3A.!!$F1 2109

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
886 927 0.24636 CAATCCGCCCCTTTTTGGAC 59.754 55.0 0.0 0.0 38.35 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2613 2796 0.109153 TGCCTGTGACTCTGCATTGT 59.891 50.0 0.0 0.0 0.0 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.414272 CTCAATAGCACGCAGGCC 58.586 61.111 0.00 0.00 0.00 5.19
23 24 1.153289 CTCAATAGCACGCAGGCCT 60.153 57.895 0.00 0.00 0.00 5.19
24 25 1.434622 CTCAATAGCACGCAGGCCTG 61.435 60.000 29.34 29.34 0.00 4.85
25 26 1.746615 CAATAGCACGCAGGCCTGT 60.747 57.895 32.81 16.06 0.00 4.00
26 27 1.450312 AATAGCACGCAGGCCTGTC 60.450 57.895 32.81 23.13 0.00 3.51
27 28 3.723235 ATAGCACGCAGGCCTGTCG 62.723 63.158 33.47 33.47 36.62 4.35
38 39 3.642755 CCTGTCGGCACAAGTGTC 58.357 61.111 1.79 0.00 29.82 3.67
44 45 2.928361 GGCACAAGTGTCGTGTCG 59.072 61.111 1.79 0.00 36.71 4.35
45 46 2.594962 GGCACAAGTGTCGTGTCGG 61.595 63.158 1.79 0.00 36.71 4.79
46 47 2.594962 GCACAAGTGTCGTGTCGGG 61.595 63.158 1.79 0.00 36.71 5.14
47 48 2.279918 ACAAGTGTCGTGTCGGGC 60.280 61.111 0.00 0.00 0.00 6.13
48 49 3.403057 CAAGTGTCGTGTCGGGCG 61.403 66.667 0.00 0.00 0.00 6.13
49 50 3.908081 AAGTGTCGTGTCGGGCGT 61.908 61.111 0.00 0.00 0.00 5.68
50 51 4.640855 AGTGTCGTGTCGGGCGTG 62.641 66.667 0.00 0.00 0.00 5.34
51 52 4.936823 GTGTCGTGTCGGGCGTGT 62.937 66.667 0.00 0.00 0.00 4.49
52 53 4.210093 TGTCGTGTCGGGCGTGTT 62.210 61.111 0.00 0.00 0.00 3.32
53 54 3.698463 GTCGTGTCGGGCGTGTTG 61.698 66.667 0.00 0.00 0.00 3.33
54 55 4.953868 TCGTGTCGGGCGTGTTGG 62.954 66.667 0.00 0.00 0.00 3.77
72 73 2.606717 GGCGCGGCCTATTTATAAAC 57.393 50.000 23.89 0.00 46.69 2.01
73 74 1.874872 GGCGCGGCCTATTTATAAACA 59.125 47.619 23.89 0.00 46.69 2.83
74 75 2.486592 GGCGCGGCCTATTTATAAACAT 59.513 45.455 23.89 0.00 46.69 2.71
75 76 3.488489 GCGCGGCCTATTTATAAACATG 58.512 45.455 8.83 0.00 0.00 3.21
76 77 3.058501 GCGCGGCCTATTTATAAACATGT 60.059 43.478 8.83 0.00 0.00 3.21
77 78 4.708601 CGCGGCCTATTTATAAACATGTC 58.291 43.478 0.00 0.00 0.00 3.06
78 79 4.665645 CGCGGCCTATTTATAAACATGTCG 60.666 45.833 0.00 0.55 0.00 4.35
79 80 4.212636 GCGGCCTATTTATAAACATGTCGT 59.787 41.667 7.43 0.00 0.00 4.34
80 81 5.614013 GCGGCCTATTTATAAACATGTCGTC 60.614 44.000 7.43 0.00 0.00 4.20
81 82 5.388061 CGGCCTATTTATAAACATGTCGTCG 60.388 44.000 0.00 0.00 0.00 5.12
82 83 5.107220 GGCCTATTTATAAACATGTCGTCGG 60.107 44.000 0.00 0.00 0.00 4.79
83 84 5.107220 GCCTATTTATAAACATGTCGTCGGG 60.107 44.000 0.00 0.00 0.00 5.14
84 85 5.407387 CCTATTTATAAACATGTCGTCGGGG 59.593 44.000 0.00 0.00 0.00 5.73
85 86 2.228138 TATAAACATGTCGTCGGGGC 57.772 50.000 0.00 0.00 0.00 5.80
86 87 0.463116 ATAAACATGTCGTCGGGGCC 60.463 55.000 0.00 0.00 0.00 5.80
87 88 2.524951 TAAACATGTCGTCGGGGCCC 62.525 60.000 15.76 15.76 0.00 5.80
89 90 4.838152 CATGTCGTCGGGGCCCTG 62.838 72.222 26.30 26.30 0.00 4.45
109 110 1.567504 CCGTGTCGGTATGCTTAAGG 58.432 55.000 4.29 0.00 42.73 2.69
110 111 1.567504 CGTGTCGGTATGCTTAAGGG 58.432 55.000 4.29 0.00 0.00 3.95
111 112 1.134907 CGTGTCGGTATGCTTAAGGGT 60.135 52.381 4.29 0.00 0.00 4.34
112 113 2.277084 GTGTCGGTATGCTTAAGGGTG 58.723 52.381 4.29 0.00 0.00 4.61
113 114 1.208535 TGTCGGTATGCTTAAGGGTGG 59.791 52.381 4.29 0.00 0.00 4.61
114 115 0.834612 TCGGTATGCTTAAGGGTGGG 59.165 55.000 4.29 0.00 0.00 4.61
115 116 0.818040 CGGTATGCTTAAGGGTGGGC 60.818 60.000 4.29 0.00 0.00 5.36
116 117 0.467474 GGTATGCTTAAGGGTGGGCC 60.467 60.000 4.29 0.00 0.00 5.80
117 118 0.818040 GTATGCTTAAGGGTGGGCCG 60.818 60.000 4.29 0.00 34.97 6.13
118 119 1.990160 TATGCTTAAGGGTGGGCCGG 61.990 60.000 4.29 0.00 34.97 6.13
119 120 4.815108 GCTTAAGGGTGGGCCGGG 62.815 72.222 2.18 0.00 34.97 5.73
120 121 4.815108 CTTAAGGGTGGGCCGGGC 62.815 72.222 22.00 22.00 34.97 6.13
145 146 3.915575 GCAGATGGCCAGGTTGAG 58.084 61.111 13.05 0.00 36.11 3.02
146 147 2.413142 GCAGATGGCCAGGTTGAGC 61.413 63.158 13.05 5.58 36.11 4.26
147 148 1.302285 CAGATGGCCAGGTTGAGCT 59.698 57.895 13.05 0.00 0.00 4.09
148 149 1.030488 CAGATGGCCAGGTTGAGCTG 61.030 60.000 13.05 0.00 0.00 4.24
149 150 1.001641 GATGGCCAGGTTGAGCTGT 60.002 57.895 13.05 0.00 0.00 4.40
150 151 0.610232 GATGGCCAGGTTGAGCTGTT 60.610 55.000 13.05 0.00 0.00 3.16
151 152 0.698238 ATGGCCAGGTTGAGCTGTTA 59.302 50.000 13.05 0.00 0.00 2.41
152 153 0.476338 TGGCCAGGTTGAGCTGTTAA 59.524 50.000 0.00 0.00 0.00 2.01
153 154 1.075374 TGGCCAGGTTGAGCTGTTAAT 59.925 47.619 0.00 0.00 0.00 1.40
154 155 2.171003 GGCCAGGTTGAGCTGTTAATT 58.829 47.619 0.00 0.00 0.00 1.40
155 156 2.562738 GGCCAGGTTGAGCTGTTAATTT 59.437 45.455 0.00 0.00 0.00 1.82
156 157 3.006859 GGCCAGGTTGAGCTGTTAATTTT 59.993 43.478 0.00 0.00 0.00 1.82
157 158 3.989817 GCCAGGTTGAGCTGTTAATTTTG 59.010 43.478 9.12 0.00 0.00 2.44
158 159 3.989817 CCAGGTTGAGCTGTTAATTTTGC 59.010 43.478 9.12 0.00 0.00 3.68
159 160 4.501229 CCAGGTTGAGCTGTTAATTTTGCA 60.501 41.667 9.12 0.00 0.00 4.08
160 161 5.232463 CAGGTTGAGCTGTTAATTTTGCAT 58.768 37.500 0.00 0.00 0.00 3.96
161 162 5.697633 CAGGTTGAGCTGTTAATTTTGCATT 59.302 36.000 0.00 0.00 0.00 3.56
162 163 5.928264 AGGTTGAGCTGTTAATTTTGCATTC 59.072 36.000 0.00 0.00 0.00 2.67
163 164 5.928264 GGTTGAGCTGTTAATTTTGCATTCT 59.072 36.000 0.00 0.00 0.00 2.40
164 165 7.039784 AGGTTGAGCTGTTAATTTTGCATTCTA 60.040 33.333 0.00 0.00 0.00 2.10
165 166 7.274250 GGTTGAGCTGTTAATTTTGCATTCTAG 59.726 37.037 0.00 0.00 0.00 2.43
166 167 7.452880 TGAGCTGTTAATTTTGCATTCTAGT 57.547 32.000 0.00 0.00 0.00 2.57
167 168 7.530010 TGAGCTGTTAATTTTGCATTCTAGTC 58.470 34.615 0.00 0.00 0.00 2.59
168 169 6.856895 AGCTGTTAATTTTGCATTCTAGTCC 58.143 36.000 0.00 0.00 0.00 3.85
169 170 6.660949 AGCTGTTAATTTTGCATTCTAGTCCT 59.339 34.615 0.00 0.00 0.00 3.85
170 171 6.749118 GCTGTTAATTTTGCATTCTAGTCCTG 59.251 38.462 0.00 0.00 0.00 3.86
171 172 7.575720 GCTGTTAATTTTGCATTCTAGTCCTGT 60.576 37.037 0.00 0.00 0.00 4.00
172 173 8.856153 TGTTAATTTTGCATTCTAGTCCTGTA 57.144 30.769 0.00 0.00 0.00 2.74
173 174 9.461312 TGTTAATTTTGCATTCTAGTCCTGTAT 57.539 29.630 0.00 0.00 0.00 2.29
177 178 9.686683 AATTTTGCATTCTAGTCCTGTATTAGT 57.313 29.630 0.00 0.00 0.00 2.24
178 179 9.686683 ATTTTGCATTCTAGTCCTGTATTAGTT 57.313 29.630 0.00 0.00 0.00 2.24
181 182 9.764363 TTGCATTCTAGTCCTGTATTAGTTATG 57.236 33.333 0.00 0.00 0.00 1.90
182 183 9.143155 TGCATTCTAGTCCTGTATTAGTTATGA 57.857 33.333 0.00 0.00 0.00 2.15
183 184 9.982651 GCATTCTAGTCCTGTATTAGTTATGAA 57.017 33.333 0.00 0.00 0.00 2.57
210 211 9.838339 ACAATATTGTTCCTTCTGAAGTATAGG 57.162 33.333 15.47 1.43 38.47 2.57
211 212 9.838339 CAATATTGTTCCTTCTGAAGTATAGGT 57.162 33.333 15.72 1.69 32.37 3.08
212 213 9.838339 AATATTGTTCCTTCTGAAGTATAGGTG 57.162 33.333 15.72 0.00 32.37 4.00
213 214 5.677319 TGTTCCTTCTGAAGTATAGGTGG 57.323 43.478 15.72 0.00 32.37 4.61
214 215 4.081087 TGTTCCTTCTGAAGTATAGGTGGC 60.081 45.833 15.72 0.00 32.37 5.01
215 216 3.039011 TCCTTCTGAAGTATAGGTGGCC 58.961 50.000 15.72 0.00 0.00 5.36
216 217 2.771943 CCTTCTGAAGTATAGGTGGCCA 59.228 50.000 15.72 0.00 0.00 5.36
217 218 3.199946 CCTTCTGAAGTATAGGTGGCCAA 59.800 47.826 7.24 0.00 0.00 4.52
218 219 4.324254 CCTTCTGAAGTATAGGTGGCCAAA 60.324 45.833 7.24 0.00 0.00 3.28
219 220 4.216411 TCTGAAGTATAGGTGGCCAAAC 57.784 45.455 7.24 3.12 0.00 2.93
220 221 2.936498 CTGAAGTATAGGTGGCCAAACG 59.064 50.000 7.24 0.00 0.00 3.60
221 222 2.285977 GAAGTATAGGTGGCCAAACGG 58.714 52.381 7.24 0.00 0.00 4.44
222 223 0.544697 AGTATAGGTGGCCAAACGGG 59.455 55.000 7.24 0.00 40.85 5.28
284 285 4.720902 CATGGGCCAGGCACGACA 62.721 66.667 15.19 6.80 32.76 4.35
285 286 4.722700 ATGGGCCAGGCACGACAC 62.723 66.667 15.19 0.00 32.76 3.67
295 296 3.152703 CACGACACGGGCTAAACG 58.847 61.111 0.00 0.00 37.36 3.60
296 297 1.372004 CACGACACGGGCTAAACGA 60.372 57.895 0.00 0.00 34.93 3.85
297 298 1.080974 ACGACACGGGCTAAACGAG 60.081 57.895 0.00 0.00 34.93 4.18
305 306 3.497031 GCTAAACGAGCCGTGCCC 61.497 66.667 0.94 0.00 46.41 5.36
306 307 3.186047 CTAAACGAGCCGTGCCCG 61.186 66.667 0.94 0.00 39.99 6.13
354 355 4.537433 CCTGGAGCCTAGGCACGC 62.537 72.222 34.70 22.26 44.88 5.34
355 356 4.880537 CTGGAGCCTAGGCACGCG 62.881 72.222 34.70 18.44 44.88 6.01
382 383 4.616181 GCACGATACAGCCTGTTAATTT 57.384 40.909 1.02 0.00 0.00 1.82
383 384 4.981794 GCACGATACAGCCTGTTAATTTT 58.018 39.130 1.02 0.00 0.00 1.82
384 385 5.399013 GCACGATACAGCCTGTTAATTTTT 58.601 37.500 1.02 0.00 0.00 1.94
453 454 2.430694 CCCAATAGGCCTAAAAACCAGC 59.569 50.000 18.42 0.00 0.00 4.85
454 455 2.430694 CCAATAGGCCTAAAAACCAGCC 59.569 50.000 18.42 0.00 46.13 4.85
456 457 4.531351 GGCCTAAAAACCAGCCCA 57.469 55.556 0.00 0.00 39.60 5.36
457 458 2.753319 GGCCTAAAAACCAGCCCAA 58.247 52.632 0.00 0.00 39.60 4.12
458 459 0.320374 GGCCTAAAAACCAGCCCAAC 59.680 55.000 0.00 0.00 39.60 3.77
459 460 1.044611 GCCTAAAAACCAGCCCAACA 58.955 50.000 0.00 0.00 0.00 3.33
460 461 1.000843 GCCTAAAAACCAGCCCAACAG 59.999 52.381 0.00 0.00 0.00 3.16
461 462 2.593026 CCTAAAAACCAGCCCAACAGA 58.407 47.619 0.00 0.00 0.00 3.41
462 463 2.296190 CCTAAAAACCAGCCCAACAGAC 59.704 50.000 0.00 0.00 0.00 3.51
463 464 2.159179 AAAAACCAGCCCAACAGACT 57.841 45.000 0.00 0.00 0.00 3.24
464 465 1.402787 AAAACCAGCCCAACAGACTG 58.597 50.000 0.00 0.00 0.00 3.51
465 466 0.550914 AAACCAGCCCAACAGACTGA 59.449 50.000 10.08 0.00 33.10 3.41
466 467 0.550914 AACCAGCCCAACAGACTGAA 59.449 50.000 10.08 0.00 33.10 3.02
467 468 0.550914 ACCAGCCCAACAGACTGAAA 59.449 50.000 10.08 0.00 33.10 2.69
468 469 1.064017 ACCAGCCCAACAGACTGAAAA 60.064 47.619 10.08 0.00 33.10 2.29
469 470 2.242043 CCAGCCCAACAGACTGAAAAT 58.758 47.619 10.08 0.00 33.10 1.82
470 471 3.181434 ACCAGCCCAACAGACTGAAAATA 60.181 43.478 10.08 0.00 33.10 1.40
471 472 4.019174 CCAGCCCAACAGACTGAAAATAT 58.981 43.478 10.08 0.00 33.10 1.28
472 473 5.192927 CCAGCCCAACAGACTGAAAATATA 58.807 41.667 10.08 0.00 33.10 0.86
473 474 5.066505 CCAGCCCAACAGACTGAAAATATAC 59.933 44.000 10.08 0.00 33.10 1.47
474 475 5.647658 CAGCCCAACAGACTGAAAATATACA 59.352 40.000 10.08 0.00 33.10 2.29
475 476 6.150976 CAGCCCAACAGACTGAAAATATACAA 59.849 38.462 10.08 0.00 33.10 2.41
476 477 6.891908 AGCCCAACAGACTGAAAATATACAAT 59.108 34.615 10.08 0.00 0.00 2.71
477 478 7.067494 AGCCCAACAGACTGAAAATATACAATC 59.933 37.037 10.08 0.00 0.00 2.67
478 479 7.682021 GCCCAACAGACTGAAAATATACAATCC 60.682 40.741 10.08 0.00 0.00 3.01
479 480 7.339212 CCCAACAGACTGAAAATATACAATCCA 59.661 37.037 10.08 0.00 0.00 3.41
480 481 8.400947 CCAACAGACTGAAAATATACAATCCAG 58.599 37.037 10.08 0.00 0.00 3.86
481 482 7.559590 ACAGACTGAAAATATACAATCCAGC 57.440 36.000 10.08 0.00 0.00 4.85
482 483 6.258727 ACAGACTGAAAATATACAATCCAGCG 59.741 38.462 10.08 0.00 0.00 5.18
483 484 6.258727 CAGACTGAAAATATACAATCCAGCGT 59.741 38.462 0.00 0.00 0.00 5.07
484 485 6.258727 AGACTGAAAATATACAATCCAGCGTG 59.741 38.462 0.00 0.00 0.00 5.34
485 486 5.168526 TGAAAATATACAATCCAGCGTGC 57.831 39.130 0.00 0.00 0.00 5.34
486 487 4.881273 TGAAAATATACAATCCAGCGTGCT 59.119 37.500 0.00 0.00 0.00 4.40
487 488 6.052360 TGAAAATATACAATCCAGCGTGCTA 58.948 36.000 0.00 0.00 0.00 3.49
488 489 6.540551 TGAAAATATACAATCCAGCGTGCTAA 59.459 34.615 0.00 0.00 0.00 3.09
489 490 6.935741 AAATATACAATCCAGCGTGCTAAA 57.064 33.333 0.00 0.00 0.00 1.85
490 491 5.924475 ATATACAATCCAGCGTGCTAAAC 57.076 39.130 0.00 0.00 0.00 2.01
499 500 2.559330 GTGCTAAACGGGCCAACG 59.441 61.111 4.39 1.48 40.31 4.10
513 514 4.622650 AACGTGCCGGCCCGTTTA 62.623 61.111 38.23 11.19 44.16 2.01
516 517 2.265424 GTGCCGGCCCGTTTACTA 59.735 61.111 26.77 0.00 0.00 1.82
517 518 1.375780 GTGCCGGCCCGTTTACTAA 60.376 57.895 26.77 0.00 0.00 2.24
518 519 0.745486 GTGCCGGCCCGTTTACTAAT 60.745 55.000 26.77 0.00 0.00 1.73
519 520 0.462403 TGCCGGCCCGTTTACTAATC 60.462 55.000 26.77 0.00 0.00 1.75
520 521 0.462403 GCCGGCCCGTTTACTAATCA 60.462 55.000 18.11 0.00 0.00 2.57
521 522 1.578583 CCGGCCCGTTTACTAATCAG 58.421 55.000 0.85 0.00 0.00 2.90
522 523 1.578583 CGGCCCGTTTACTAATCAGG 58.421 55.000 0.00 0.00 0.00 3.86
523 524 1.306148 GGCCCGTTTACTAATCAGGC 58.694 55.000 0.00 0.00 38.21 4.85
524 525 1.306148 GCCCGTTTACTAATCAGGCC 58.694 55.000 0.00 0.00 32.68 5.19
525 526 1.578583 CCCGTTTACTAATCAGGCCG 58.421 55.000 0.00 0.00 0.00 6.13
526 527 1.134610 CCCGTTTACTAATCAGGCCGT 60.135 52.381 0.00 0.00 0.00 5.68
527 528 1.931172 CCGTTTACTAATCAGGCCGTG 59.069 52.381 0.00 0.00 0.00 4.94
528 529 1.326548 CGTTTACTAATCAGGCCGTGC 59.673 52.381 0.00 0.00 0.00 5.34
583 584 4.370364 GGCACGGCCCATATAATAAATG 57.630 45.455 0.00 0.00 44.06 2.32
584 585 3.761752 GGCACGGCCCATATAATAAATGT 59.238 43.478 0.00 0.00 44.06 2.71
585 586 4.380444 GGCACGGCCCATATAATAAATGTG 60.380 45.833 0.00 0.00 44.06 3.21
586 587 4.732784 CACGGCCCATATAATAAATGTGC 58.267 43.478 0.00 0.00 0.00 4.57
587 588 3.761752 ACGGCCCATATAATAAATGTGCC 59.238 43.478 0.00 0.14 42.45 5.01
588 589 3.130340 CGGCCCATATAATAAATGTGCCC 59.870 47.826 0.00 0.00 42.78 5.36
589 590 4.352893 GGCCCATATAATAAATGTGCCCT 58.647 43.478 0.00 0.00 40.70 5.19
590 591 4.160252 GGCCCATATAATAAATGTGCCCTG 59.840 45.833 0.00 0.00 40.70 4.45
591 592 4.160252 GCCCATATAATAAATGTGCCCTGG 59.840 45.833 0.00 0.00 0.00 4.45
592 593 4.160252 CCCATATAATAAATGTGCCCTGGC 59.840 45.833 0.00 0.00 42.35 4.85
593 594 5.018809 CCATATAATAAATGTGCCCTGGCT 58.981 41.667 9.97 0.00 42.51 4.75
594 595 5.105635 CCATATAATAAATGTGCCCTGGCTG 60.106 44.000 9.97 0.00 42.51 4.85
595 596 1.488390 AATAAATGTGCCCTGGCTGG 58.512 50.000 9.97 2.96 42.51 4.85
620 621 2.895372 GGGCCAGGCACGATTACG 60.895 66.667 15.19 0.00 45.75 3.18
621 622 3.573491 GGCCAGGCACGATTACGC 61.573 66.667 15.19 0.00 43.96 4.42
650 651 4.354162 GGCCCGTTTGCCCAGGTA 62.354 66.667 0.00 0.00 46.11 3.08
651 652 2.044352 GCCCGTTTGCCCAGGTAT 60.044 61.111 0.00 0.00 0.00 2.73
652 653 2.414785 GCCCGTTTGCCCAGGTATG 61.415 63.158 0.00 0.00 0.00 2.39
661 662 1.340017 TGCCCAGGTATGTTCTGAAGC 60.340 52.381 0.00 0.00 34.36 3.86
666 667 0.645868 GGTATGTTCTGAAGCGTCGC 59.354 55.000 9.80 9.80 0.00 5.19
670 671 0.581529 TGTTCTGAAGCGTCGCAAAG 59.418 50.000 21.09 13.20 0.00 2.77
673 674 1.577468 TCTGAAGCGTCGCAAAGAAA 58.423 45.000 21.09 0.00 0.00 2.52
720 729 2.114616 CAGTCTAGGGCATTGGACTCT 58.885 52.381 4.65 0.00 36.99 3.24
721 730 2.114616 AGTCTAGGGCATTGGACTCTG 58.885 52.381 2.20 0.00 34.44 3.35
725 738 1.450312 GGGCATTGGACTCTGACGG 60.450 63.158 0.00 0.00 0.00 4.79
728 741 1.811266 CATTGGACTCTGACGGCCG 60.811 63.158 26.86 26.86 0.00 6.13
729 742 3.019003 ATTGGACTCTGACGGCCGG 62.019 63.158 31.76 13.93 0.00 6.13
778 819 0.748005 ATCGCCAAACCCCTCAATCG 60.748 55.000 0.00 0.00 0.00 3.34
814 855 0.532196 GGAACCCTAGATTTCCGCCG 60.532 60.000 6.58 0.00 32.26 6.46
886 927 0.246360 CAATCCGCCCCTTTTTGGAC 59.754 55.000 0.00 0.00 38.35 4.02
1404 1465 2.874780 GGCTACTCGTGCGTCGTG 60.875 66.667 0.00 2.03 40.80 4.35
1431 1492 3.445518 GATGACCATCCTCGCCGCA 62.446 63.158 0.00 0.00 31.76 5.69
1557 1618 1.296392 CTTCATCGGCCACCTGTCA 59.704 57.895 2.24 0.00 0.00 3.58
1563 1624 2.971598 CGGCCACCTGTCAGGGATT 61.972 63.158 23.06 0.00 40.58 3.01
1566 1627 1.215423 GGCCACCTGTCAGGGATTATT 59.785 52.381 23.06 0.00 40.58 1.40
1572 1633 3.333680 ACCTGTCAGGGATTATTGTTGGT 59.666 43.478 23.06 0.00 40.58 3.67
1578 1639 6.177610 GTCAGGGATTATTGTTGGTTACTCA 58.822 40.000 0.00 0.00 0.00 3.41
1686 1747 2.281208 CGCACGGGGTCTTTGGAA 60.281 61.111 0.00 0.00 0.00 3.53
1692 1753 1.702957 ACGGGGTCTTTGGAAATGAGA 59.297 47.619 0.00 0.00 29.98 3.27
1719 1780 2.541556 GAGATTGAGCCAGTTACGGAC 58.458 52.381 0.00 0.00 0.00 4.79
1737 1798 4.803426 CCCTCGCTGCCGTCTGTC 62.803 72.222 0.00 0.00 35.54 3.51
1761 1822 1.299976 GGTCGCCTCCAGAAATGGT 59.700 57.895 0.00 0.00 0.00 3.55
1877 1942 5.891451 AGGTCTTGTTTCAGCTTGTAAAAC 58.109 37.500 0.00 0.00 34.30 2.43
1940 2005 6.782494 AGAATCTGGTGTTATGGGTTTCTTTT 59.218 34.615 0.00 0.00 0.00 2.27
2035 2109 6.472016 TGTGAAGTAGCATGTAAAGGAATGA 58.528 36.000 0.00 0.00 0.00 2.57
2039 2113 7.550551 TGAAGTAGCATGTAAAGGAATGAGAAG 59.449 37.037 0.00 0.00 0.00 2.85
2046 2120 7.415541 GCATGTAAAGGAATGAGAAGCATGTAA 60.416 37.037 0.00 0.00 37.28 2.41
2047 2121 7.994425 TGTAAAGGAATGAGAAGCATGTAAA 57.006 32.000 0.00 0.00 37.28 2.01
2048 2122 8.044060 TGTAAAGGAATGAGAAGCATGTAAAG 57.956 34.615 0.00 0.00 37.28 1.85
2269 2361 2.812011 GTGTTTTGAAGTGCGGATAGGT 59.188 45.455 0.00 0.00 0.00 3.08
2280 2372 3.978855 GTGCGGATAGGTTTTTGTTTCAC 59.021 43.478 0.00 0.00 0.00 3.18
2319 2411 6.094048 ACCATGTTGACACAATGCTATACTTC 59.906 38.462 0.00 0.00 36.16 3.01
2344 2436 4.772100 AGTTTTGGAAATCTGGTGGTATGG 59.228 41.667 0.00 0.00 0.00 2.74
2346 2438 2.283834 TGGAAATCTGGTGGTATGGGT 58.716 47.619 0.00 0.00 0.00 4.51
2380 2476 9.160496 GTCATCTCAGATGTGAAGTTCTTTTAT 57.840 33.333 14.56 0.00 30.14 1.40
2422 2519 2.921121 TCATTCGAACAGAACGGATTCG 59.079 45.455 0.00 0.00 45.07 3.34
2435 2532 3.223423 CGGATTCGTCTATGGAGGATG 57.777 52.381 2.10 0.00 36.44 3.51
2436 2533 2.558795 CGGATTCGTCTATGGAGGATGT 59.441 50.000 2.10 0.00 36.44 3.06
2437 2534 3.756963 CGGATTCGTCTATGGAGGATGTA 59.243 47.826 2.10 0.00 36.44 2.29
2438 2535 4.399618 CGGATTCGTCTATGGAGGATGTAT 59.600 45.833 2.10 0.00 36.44 2.29
2439 2536 5.589050 CGGATTCGTCTATGGAGGATGTATA 59.411 44.000 2.10 0.00 36.44 1.47
2440 2537 6.263392 CGGATTCGTCTATGGAGGATGTATAT 59.737 42.308 2.10 0.00 36.44 0.86
2441 2538 7.201830 CGGATTCGTCTATGGAGGATGTATATT 60.202 40.741 2.10 0.00 36.44 1.28
2442 2539 7.923344 GGATTCGTCTATGGAGGATGTATATTG 59.077 40.741 2.10 0.00 36.44 1.90
2480 2661 5.845985 TGAGAAGCATGTAGAAAAGAACG 57.154 39.130 0.00 0.00 0.00 3.95
2522 2703 9.212641 TGCATATCAGATTGTTTCTATTCTAGC 57.787 33.333 0.00 0.00 31.77 3.42
2523 2704 9.212641 GCATATCAGATTGTTTCTATTCTAGCA 57.787 33.333 0.00 0.00 31.77 3.49
2580 2763 5.474532 TGCTTTTCATGTGGATGATATAGCC 59.525 40.000 0.00 0.00 38.43 3.93
2598 2781 4.414337 AGCCTGGATGAAGAACTGATAC 57.586 45.455 0.00 0.00 0.00 2.24
2608 2791 3.791973 AGAACTGATACGCTCCTTCTG 57.208 47.619 0.00 0.00 0.00 3.02
2609 2792 2.159170 AGAACTGATACGCTCCTTCTGC 60.159 50.000 0.00 0.00 0.00 4.26
2610 2793 0.461961 ACTGATACGCTCCTTCTGCC 59.538 55.000 0.00 0.00 0.00 4.85
2611 2794 0.461548 CTGATACGCTCCTTCTGCCA 59.538 55.000 0.00 0.00 0.00 4.92
2613 2796 0.747255 GATACGCTCCTTCTGCCAGA 59.253 55.000 0.00 0.00 0.00 3.86
2615 2798 0.898326 TACGCTCCTTCTGCCAGACA 60.898 55.000 0.00 0.00 0.00 3.41
2616 2799 1.004560 CGCTCCTTCTGCCAGACAA 60.005 57.895 0.00 0.00 0.00 3.18
2617 2800 0.392193 CGCTCCTTCTGCCAGACAAT 60.392 55.000 0.00 0.00 0.00 2.71
2618 2801 1.093159 GCTCCTTCTGCCAGACAATG 58.907 55.000 0.00 0.00 0.00 2.82
2619 2802 1.093159 CTCCTTCTGCCAGACAATGC 58.907 55.000 0.00 0.00 0.00 3.56
2620 2803 0.401356 TCCTTCTGCCAGACAATGCA 59.599 50.000 0.00 0.00 35.86 3.96
2696 2898 3.499157 CCCCTTTTGCATCAATGTGTTTG 59.501 43.478 0.00 0.00 36.61 2.93
2764 2966 9.884814 AGGAAGTTCCAAGTATAGATATGTACT 57.115 33.333 23.87 0.00 39.61 2.73
2767 2969 8.653036 AGTTCCAAGTATAGATATGTACTCCC 57.347 38.462 0.00 0.00 31.10 4.30
2768 2970 8.457757 AGTTCCAAGTATAGATATGTACTCCCT 58.542 37.037 0.00 0.00 31.10 4.20
2769 2971 8.741841 GTTCCAAGTATAGATATGTACTCCCTC 58.258 40.741 0.00 0.00 31.10 4.30
2770 2972 8.233349 TCCAAGTATAGATATGTACTCCCTCT 57.767 38.462 0.00 0.00 31.10 3.69
2771 2973 8.110271 TCCAAGTATAGATATGTACTCCCTCTG 58.890 40.741 0.00 0.00 31.10 3.35
2772 2974 7.891183 CCAAGTATAGATATGTACTCCCTCTGT 59.109 40.741 0.00 0.00 31.10 3.41
2773 2975 9.961264 CAAGTATAGATATGTACTCCCTCTGTA 57.039 37.037 0.00 0.00 31.10 2.74
2777 2979 8.887264 ATAGATATGTACTCCCTCTGTAAAGG 57.113 38.462 0.00 0.00 36.08 3.11
2778 2980 6.923670 AGATATGTACTCCCTCTGTAAAGGA 58.076 40.000 0.00 0.00 38.87 3.36
2779 2981 7.363031 AGATATGTACTCCCTCTGTAAAGGAA 58.637 38.462 0.00 0.00 38.87 3.36
2780 2982 8.013667 AGATATGTACTCCCTCTGTAAAGGAAT 58.986 37.037 0.00 0.00 38.87 3.01
2781 2983 9.310449 GATATGTACTCCCTCTGTAAAGGAATA 57.690 37.037 0.00 0.00 38.87 1.75
2782 2984 9.845214 ATATGTACTCCCTCTGTAAAGGAATAT 57.155 33.333 0.00 0.00 38.87 1.28
2784 2986 9.670442 ATGTACTCCCTCTGTAAAGGAATATAA 57.330 33.333 0.00 0.00 38.87 0.98
2785 2987 9.144298 TGTACTCCCTCTGTAAAGGAATATAAG 57.856 37.037 0.00 0.00 38.87 1.73
2786 2988 9.364653 GTACTCCCTCTGTAAAGGAATATAAGA 57.635 37.037 0.00 0.00 38.87 2.10
2787 2989 8.485578 ACTCCCTCTGTAAAGGAATATAAGAG 57.514 38.462 0.00 0.00 38.87 2.85
2788 2990 7.015779 ACTCCCTCTGTAAAGGAATATAAGAGC 59.984 40.741 0.00 0.00 38.87 4.09
2789 2991 7.076446 TCCCTCTGTAAAGGAATATAAGAGCT 58.924 38.462 0.00 0.00 38.87 4.09
2790 2992 8.232412 TCCCTCTGTAAAGGAATATAAGAGCTA 58.768 37.037 0.00 0.00 38.87 3.32
2791 2993 8.871125 CCCTCTGTAAAGGAATATAAGAGCTAA 58.129 37.037 0.00 0.00 38.87 3.09
2812 3014 9.088512 AGCTAAACACTCTTATATTTCTTCACG 57.911 33.333 0.00 0.00 0.00 4.35
2813 3015 9.084164 GCTAAACACTCTTATATTTCTTCACGA 57.916 33.333 0.00 0.00 0.00 4.35
2815 3017 8.480643 AAACACTCTTATATTTCTTCACGAGG 57.519 34.615 0.00 0.00 0.00 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 1.153289 AGGCCTGCGTGCTATTGAG 60.153 57.895 3.11 0.00 0.00 3.02
6 7 1.450134 CAGGCCTGCGTGCTATTGA 60.450 57.895 22.33 0.00 0.00 2.57
7 8 1.709147 GACAGGCCTGCGTGCTATTG 61.709 60.000 33.06 6.18 35.48 1.90
8 9 1.450312 GACAGGCCTGCGTGCTATT 60.450 57.895 33.06 10.64 35.48 1.73
9 10 2.187946 GACAGGCCTGCGTGCTAT 59.812 61.111 33.06 11.49 35.48 2.97
10 11 4.435436 CGACAGGCCTGCGTGCTA 62.435 66.667 33.06 0.00 35.48 3.49
21 22 2.310233 CGACACTTGTGCCGACAGG 61.310 63.158 3.48 0.00 41.62 4.00
22 23 1.591594 ACGACACTTGTGCCGACAG 60.592 57.895 15.59 0.00 32.26 3.51
23 24 1.880796 CACGACACTTGTGCCGACA 60.881 57.895 15.59 0.00 0.00 4.35
24 25 1.818221 GACACGACACTTGTGCCGAC 61.818 60.000 15.59 4.05 41.03 4.79
25 26 1.590525 GACACGACACTTGTGCCGA 60.591 57.895 15.59 0.00 41.03 5.54
26 27 2.927618 CGACACGACACTTGTGCCG 61.928 63.158 7.84 7.84 41.03 5.69
27 28 2.594962 CCGACACGACACTTGTGCC 61.595 63.158 0.10 0.00 41.03 5.01
28 29 2.594962 CCCGACACGACACTTGTGC 61.595 63.158 0.10 0.00 41.03 4.57
29 30 2.594962 GCCCGACACGACACTTGTG 61.595 63.158 0.00 0.00 42.99 3.33
30 31 2.279918 GCCCGACACGACACTTGT 60.280 61.111 0.00 0.00 0.00 3.16
31 32 3.403057 CGCCCGACACGACACTTG 61.403 66.667 0.00 0.00 0.00 3.16
32 33 3.908081 ACGCCCGACACGACACTT 61.908 61.111 0.00 0.00 0.00 3.16
33 34 4.640855 CACGCCCGACACGACACT 62.641 66.667 0.00 0.00 0.00 3.55
34 35 4.936823 ACACGCCCGACACGACAC 62.937 66.667 0.00 0.00 0.00 3.67
35 36 4.210093 AACACGCCCGACACGACA 62.210 61.111 0.00 0.00 0.00 4.35
36 37 3.698463 CAACACGCCCGACACGAC 61.698 66.667 0.00 0.00 0.00 4.34
37 38 4.953868 CCAACACGCCCGACACGA 62.954 66.667 0.00 0.00 0.00 4.35
54 55 3.058501 ACATGTTTATAAATAGGCCGCGC 60.059 43.478 0.00 0.00 0.00 6.86
55 56 4.665645 CGACATGTTTATAAATAGGCCGCG 60.666 45.833 0.00 0.00 0.00 6.46
56 57 4.212636 ACGACATGTTTATAAATAGGCCGC 59.787 41.667 13.37 1.53 0.00 6.53
57 58 5.388061 CGACGACATGTTTATAAATAGGCCG 60.388 44.000 12.23 12.23 0.00 6.13
58 59 5.107220 CCGACGACATGTTTATAAATAGGCC 60.107 44.000 0.00 0.00 0.00 5.19
59 60 5.107220 CCCGACGACATGTTTATAAATAGGC 60.107 44.000 0.00 0.00 0.00 3.93
60 61 5.407387 CCCCGACGACATGTTTATAAATAGG 59.593 44.000 0.00 3.09 0.00 2.57
61 62 5.107220 GCCCCGACGACATGTTTATAAATAG 60.107 44.000 0.00 0.00 0.00 1.73
62 63 4.751098 GCCCCGACGACATGTTTATAAATA 59.249 41.667 0.00 0.00 0.00 1.40
63 64 3.562557 GCCCCGACGACATGTTTATAAAT 59.437 43.478 0.00 0.00 0.00 1.40
64 65 2.937799 GCCCCGACGACATGTTTATAAA 59.062 45.455 0.00 0.00 0.00 1.40
65 66 2.553086 GCCCCGACGACATGTTTATAA 58.447 47.619 0.00 0.00 0.00 0.98
66 67 1.202557 GGCCCCGACGACATGTTTATA 60.203 52.381 0.00 0.00 0.00 0.98
67 68 0.463116 GGCCCCGACGACATGTTTAT 60.463 55.000 0.00 0.00 0.00 1.40
68 69 1.078988 GGCCCCGACGACATGTTTA 60.079 57.895 0.00 0.00 0.00 2.01
69 70 2.359478 GGCCCCGACGACATGTTT 60.359 61.111 0.00 0.00 0.00 2.83
70 71 4.404098 GGGCCCCGACGACATGTT 62.404 66.667 12.23 0.00 0.00 2.71
72 73 4.838152 CAGGGCCCCGACGACATG 62.838 72.222 21.43 2.97 0.00 3.21
91 92 1.134907 ACCCTTAAGCATACCGACACG 60.135 52.381 0.00 0.00 0.00 4.49
92 93 2.277084 CACCCTTAAGCATACCGACAC 58.723 52.381 0.00 0.00 0.00 3.67
93 94 1.208535 CCACCCTTAAGCATACCGACA 59.791 52.381 0.00 0.00 0.00 4.35
94 95 1.474498 CCCACCCTTAAGCATACCGAC 60.474 57.143 0.00 0.00 0.00 4.79
95 96 0.834612 CCCACCCTTAAGCATACCGA 59.165 55.000 0.00 0.00 0.00 4.69
96 97 0.818040 GCCCACCCTTAAGCATACCG 60.818 60.000 0.00 0.00 0.00 4.02
97 98 0.467474 GGCCCACCCTTAAGCATACC 60.467 60.000 0.00 0.00 0.00 2.73
98 99 0.818040 CGGCCCACCCTTAAGCATAC 60.818 60.000 0.00 0.00 0.00 2.39
99 100 1.529796 CGGCCCACCCTTAAGCATA 59.470 57.895 0.00 0.00 0.00 3.14
100 101 2.275418 CGGCCCACCCTTAAGCAT 59.725 61.111 0.00 0.00 0.00 3.79
101 102 4.041762 CCGGCCCACCCTTAAGCA 62.042 66.667 0.00 0.00 0.00 3.91
102 103 4.815108 CCCGGCCCACCCTTAAGC 62.815 72.222 0.00 0.00 0.00 3.09
103 104 4.815108 GCCCGGCCCACCCTTAAG 62.815 72.222 0.00 0.00 0.00 1.85
128 129 2.413142 GCTCAACCTGGCCATCTGC 61.413 63.158 5.51 1.40 40.16 4.26
129 130 1.030488 CAGCTCAACCTGGCCATCTG 61.030 60.000 5.51 3.95 0.00 2.90
130 131 1.302285 CAGCTCAACCTGGCCATCT 59.698 57.895 5.51 0.00 0.00 2.90
131 132 0.610232 AACAGCTCAACCTGGCCATC 60.610 55.000 5.51 0.00 37.16 3.51
132 133 0.698238 TAACAGCTCAACCTGGCCAT 59.302 50.000 5.51 0.00 37.16 4.40
133 134 0.476338 TTAACAGCTCAACCTGGCCA 59.524 50.000 4.71 4.71 37.16 5.36
134 135 1.839424 ATTAACAGCTCAACCTGGCC 58.161 50.000 0.00 0.00 37.16 5.36
135 136 3.942130 AAATTAACAGCTCAACCTGGC 57.058 42.857 0.00 0.00 37.16 4.85
136 137 3.989817 GCAAAATTAACAGCTCAACCTGG 59.010 43.478 0.00 0.00 37.16 4.45
137 138 4.619973 TGCAAAATTAACAGCTCAACCTG 58.380 39.130 0.00 0.00 38.78 4.00
138 139 4.935352 TGCAAAATTAACAGCTCAACCT 57.065 36.364 0.00 0.00 0.00 3.50
139 140 5.928264 AGAATGCAAAATTAACAGCTCAACC 59.072 36.000 0.00 0.00 0.00 3.77
140 141 7.809806 ACTAGAATGCAAAATTAACAGCTCAAC 59.190 33.333 0.00 0.00 0.00 3.18
141 142 7.885297 ACTAGAATGCAAAATTAACAGCTCAA 58.115 30.769 0.00 0.00 0.00 3.02
142 143 7.362056 GGACTAGAATGCAAAATTAACAGCTCA 60.362 37.037 0.00 0.00 0.00 4.26
143 144 6.969473 GGACTAGAATGCAAAATTAACAGCTC 59.031 38.462 0.00 0.00 0.00 4.09
144 145 6.660949 AGGACTAGAATGCAAAATTAACAGCT 59.339 34.615 0.00 0.00 0.00 4.24
145 146 6.749118 CAGGACTAGAATGCAAAATTAACAGC 59.251 38.462 0.00 0.00 0.00 4.40
146 147 7.820648 ACAGGACTAGAATGCAAAATTAACAG 58.179 34.615 0.00 0.00 0.00 3.16
147 148 7.759489 ACAGGACTAGAATGCAAAATTAACA 57.241 32.000 0.00 0.00 0.00 2.41
151 152 9.686683 ACTAATACAGGACTAGAATGCAAAATT 57.313 29.630 0.00 0.00 0.00 1.82
152 153 9.686683 AACTAATACAGGACTAGAATGCAAAAT 57.313 29.630 0.00 0.00 0.00 1.82
155 156 9.764363 CATAACTAATACAGGACTAGAATGCAA 57.236 33.333 0.00 0.00 0.00 4.08
156 157 9.143155 TCATAACTAATACAGGACTAGAATGCA 57.857 33.333 0.00 0.00 0.00 3.96
157 158 9.982651 TTCATAACTAATACAGGACTAGAATGC 57.017 33.333 0.00 0.00 0.00 3.56
184 185 9.838339 CCTATACTTCAGAAGGAACAATATTGT 57.162 33.333 15.47 15.47 44.72 2.71
185 186 9.838339 ACCTATACTTCAGAAGGAACAATATTG 57.162 33.333 14.01 14.01 33.16 1.90
186 187 9.838339 CACCTATACTTCAGAAGGAACAATATT 57.162 33.333 14.90 0.00 33.16 1.28
187 188 8.432805 CCACCTATACTTCAGAAGGAACAATAT 58.567 37.037 14.90 4.83 33.16 1.28
188 189 7.635089 GCCACCTATACTTCAGAAGGAACAATA 60.635 40.741 14.90 0.00 33.16 1.90
189 190 6.653989 CCACCTATACTTCAGAAGGAACAAT 58.346 40.000 14.90 3.02 33.16 2.71
190 191 5.570844 GCCACCTATACTTCAGAAGGAACAA 60.571 44.000 14.90 0.00 33.16 2.83
191 192 4.081087 GCCACCTATACTTCAGAAGGAACA 60.081 45.833 14.90 0.00 33.16 3.18
192 193 4.443621 GCCACCTATACTTCAGAAGGAAC 58.556 47.826 14.90 0.00 33.16 3.62
193 194 3.454812 GGCCACCTATACTTCAGAAGGAA 59.545 47.826 14.90 2.67 33.16 3.36
194 195 3.039011 GGCCACCTATACTTCAGAAGGA 58.961 50.000 14.90 6.30 33.16 3.36
195 196 2.771943 TGGCCACCTATACTTCAGAAGG 59.228 50.000 14.90 0.00 35.14 3.46
196 197 4.487714 TTGGCCACCTATACTTCAGAAG 57.512 45.455 3.88 8.77 0.00 2.85
197 198 4.585879 GTTTGGCCACCTATACTTCAGAA 58.414 43.478 3.88 0.00 0.00 3.02
198 199 3.369052 CGTTTGGCCACCTATACTTCAGA 60.369 47.826 3.88 0.00 0.00 3.27
199 200 2.936498 CGTTTGGCCACCTATACTTCAG 59.064 50.000 3.88 0.00 0.00 3.02
200 201 2.355310 CCGTTTGGCCACCTATACTTCA 60.355 50.000 3.88 0.00 0.00 3.02
201 202 2.285977 CCGTTTGGCCACCTATACTTC 58.714 52.381 3.88 0.00 0.00 3.01
202 203 1.064979 CCCGTTTGGCCACCTATACTT 60.065 52.381 3.88 0.00 0.00 2.24
203 204 0.544697 CCCGTTTGGCCACCTATACT 59.455 55.000 3.88 0.00 0.00 2.12
204 205 3.089788 CCCGTTTGGCCACCTATAC 57.910 57.895 3.88 0.00 0.00 1.47
267 268 4.720902 TGTCGTGCCTGGCCCATG 62.721 66.667 17.53 3.88 0.00 3.66
268 269 4.722700 GTGTCGTGCCTGGCCCAT 62.723 66.667 17.53 0.00 0.00 4.00
274 275 3.583276 TTAGCCCGTGTCGTGCCTG 62.583 63.158 0.00 0.00 29.06 4.85
275 276 2.874664 TTTAGCCCGTGTCGTGCCT 61.875 57.895 0.00 0.00 29.06 4.75
276 277 2.357760 TTTAGCCCGTGTCGTGCC 60.358 61.111 0.00 0.00 29.06 5.01
277 278 2.858158 GTTTAGCCCGTGTCGTGC 59.142 61.111 0.00 0.00 0.00 5.34
278 279 1.342082 CTCGTTTAGCCCGTGTCGTG 61.342 60.000 0.00 0.00 0.00 4.35
279 280 1.080974 CTCGTTTAGCCCGTGTCGT 60.081 57.895 0.00 0.00 0.00 4.34
280 281 2.442188 GCTCGTTTAGCCCGTGTCG 61.442 63.158 0.00 0.00 46.25 4.35
281 282 3.471399 GCTCGTTTAGCCCGTGTC 58.529 61.111 0.00 0.00 46.25 3.67
337 338 4.537433 GCGTGCCTAGGCTCCAGG 62.537 72.222 33.07 19.70 42.51 4.45
338 339 4.880537 CGCGTGCCTAGGCTCCAG 62.881 72.222 33.07 21.27 42.51 3.86
361 362 4.616181 AAATTAACAGGCTGTATCGTGC 57.384 40.909 22.37 0.00 0.00 5.34
432 433 2.430694 GCTGGTTTTTAGGCCTATTGGG 59.569 50.000 14.74 2.10 38.36 4.12
433 434 2.430694 GGCTGGTTTTTAGGCCTATTGG 59.569 50.000 14.74 1.56 41.20 3.16
434 435 3.801114 GGCTGGTTTTTAGGCCTATTG 57.199 47.619 14.74 0.49 41.20 1.90
440 441 1.000843 CTGTTGGGCTGGTTTTTAGGC 59.999 52.381 0.00 0.00 39.76 3.93
441 442 2.296190 GTCTGTTGGGCTGGTTTTTAGG 59.704 50.000 0.00 0.00 0.00 2.69
442 443 3.004734 CAGTCTGTTGGGCTGGTTTTTAG 59.995 47.826 0.00 0.00 0.00 1.85
443 444 2.955660 CAGTCTGTTGGGCTGGTTTTTA 59.044 45.455 0.00 0.00 0.00 1.52
444 445 1.756538 CAGTCTGTTGGGCTGGTTTTT 59.243 47.619 0.00 0.00 0.00 1.94
445 446 1.064017 TCAGTCTGTTGGGCTGGTTTT 60.064 47.619 0.00 0.00 0.00 2.43
446 447 0.550914 TCAGTCTGTTGGGCTGGTTT 59.449 50.000 0.00 0.00 0.00 3.27
447 448 0.550914 TTCAGTCTGTTGGGCTGGTT 59.449 50.000 0.00 0.00 0.00 3.67
448 449 0.550914 TTTCAGTCTGTTGGGCTGGT 59.449 50.000 0.00 0.00 0.00 4.00
449 450 1.691196 TTTTCAGTCTGTTGGGCTGG 58.309 50.000 0.00 0.00 0.00 4.85
450 451 5.647658 TGTATATTTTCAGTCTGTTGGGCTG 59.352 40.000 0.00 0.00 0.00 4.85
451 452 5.815581 TGTATATTTTCAGTCTGTTGGGCT 58.184 37.500 0.00 0.00 0.00 5.19
452 453 6.509418 TTGTATATTTTCAGTCTGTTGGGC 57.491 37.500 0.00 0.00 0.00 5.36
453 454 7.339212 TGGATTGTATATTTTCAGTCTGTTGGG 59.661 37.037 0.00 0.00 0.00 4.12
454 455 8.279970 TGGATTGTATATTTTCAGTCTGTTGG 57.720 34.615 0.00 0.00 0.00 3.77
455 456 7.912250 GCTGGATTGTATATTTTCAGTCTGTTG 59.088 37.037 0.00 0.00 0.00 3.33
456 457 7.201644 CGCTGGATTGTATATTTTCAGTCTGTT 60.202 37.037 0.00 0.00 0.00 3.16
457 458 6.258727 CGCTGGATTGTATATTTTCAGTCTGT 59.741 38.462 0.00 0.00 0.00 3.41
458 459 6.258727 ACGCTGGATTGTATATTTTCAGTCTG 59.741 38.462 0.00 0.00 0.00 3.51
459 460 6.258727 CACGCTGGATTGTATATTTTCAGTCT 59.741 38.462 0.00 0.00 0.00 3.24
460 461 6.422223 CACGCTGGATTGTATATTTTCAGTC 58.578 40.000 0.00 0.00 0.00 3.51
461 462 5.220854 GCACGCTGGATTGTATATTTTCAGT 60.221 40.000 0.00 0.00 0.00 3.41
462 463 5.008019 AGCACGCTGGATTGTATATTTTCAG 59.992 40.000 0.00 0.00 0.00 3.02
463 464 4.881273 AGCACGCTGGATTGTATATTTTCA 59.119 37.500 0.00 0.00 0.00 2.69
464 465 5.424121 AGCACGCTGGATTGTATATTTTC 57.576 39.130 0.00 0.00 0.00 2.29
465 466 6.935741 TTAGCACGCTGGATTGTATATTTT 57.064 33.333 0.72 0.00 0.00 1.82
466 467 6.511121 CGTTTAGCACGCTGGATTGTATATTT 60.511 38.462 0.72 0.00 43.37 1.40
467 468 5.050363 CGTTTAGCACGCTGGATTGTATATT 60.050 40.000 0.72 0.00 43.37 1.28
468 469 4.447724 CGTTTAGCACGCTGGATTGTATAT 59.552 41.667 0.72 0.00 43.37 0.86
469 470 3.799963 CGTTTAGCACGCTGGATTGTATA 59.200 43.478 0.72 0.00 43.37 1.47
470 471 2.607635 CGTTTAGCACGCTGGATTGTAT 59.392 45.455 0.72 0.00 43.37 2.29
471 472 1.996898 CGTTTAGCACGCTGGATTGTA 59.003 47.619 0.72 0.00 43.37 2.41
472 473 0.796312 CGTTTAGCACGCTGGATTGT 59.204 50.000 0.72 0.00 43.37 2.71
473 474 3.586039 CGTTTAGCACGCTGGATTG 57.414 52.632 0.72 0.00 43.37 2.67
482 483 2.255881 ACGTTGGCCCGTTTAGCAC 61.256 57.895 0.00 0.00 37.96 4.40
483 484 2.111460 ACGTTGGCCCGTTTAGCA 59.889 55.556 0.00 0.00 37.96 3.49
484 485 2.559330 CACGTTGGCCCGTTTAGC 59.441 61.111 4.13 0.00 39.45 3.09
485 486 2.559330 GCACGTTGGCCCGTTTAG 59.441 61.111 4.13 0.00 39.45 1.85
499 500 0.745486 ATTAGTAAACGGGCCGGCAC 60.745 55.000 31.78 26.77 0.00 5.01
500 501 0.462403 GATTAGTAAACGGGCCGGCA 60.462 55.000 31.78 11.85 0.00 5.69
501 502 0.462403 TGATTAGTAAACGGGCCGGC 60.462 55.000 31.78 21.18 0.00 6.13
502 503 1.578583 CTGATTAGTAAACGGGCCGG 58.421 55.000 31.78 12.53 0.00 6.13
503 504 1.578583 CCTGATTAGTAAACGGGCCG 58.421 55.000 27.06 27.06 0.00 6.13
504 505 1.306148 GCCTGATTAGTAAACGGGCC 58.694 55.000 25.41 12.20 46.61 5.80
506 507 1.134610 ACGGCCTGATTAGTAAACGGG 60.135 52.381 12.58 12.58 0.00 5.28
507 508 1.931172 CACGGCCTGATTAGTAAACGG 59.069 52.381 0.00 0.00 0.00 4.44
508 509 1.326548 GCACGGCCTGATTAGTAAACG 59.673 52.381 0.00 0.00 0.00 3.60
509 510 1.669265 GGCACGGCCTGATTAGTAAAC 59.331 52.381 0.00 0.00 46.69 2.01
510 511 2.032680 GGCACGGCCTGATTAGTAAA 57.967 50.000 0.00 0.00 46.69 2.01
511 512 3.772619 GGCACGGCCTGATTAGTAA 57.227 52.632 0.00 0.00 46.69 2.24
535 536 4.156622 CACGTGCTGCGCATCCAG 62.157 66.667 12.24 5.99 46.11 3.86
562 563 7.839883 GCACATTTATTATATGGGCCGTGCC 62.840 48.000 8.97 6.38 44.70 5.01
563 564 4.732784 CACATTTATTATATGGGCCGTGC 58.267 43.478 8.97 0.00 0.00 5.34
564 565 4.732784 GCACATTTATTATATGGGCCGTG 58.267 43.478 8.97 1.80 44.70 4.94
569 570 4.160252 GCCAGGGCACATTTATTATATGGG 59.840 45.833 5.20 0.00 41.49 4.00
570 571 5.018809 AGCCAGGGCACATTTATTATATGG 58.981 41.667 13.63 0.00 44.88 2.74
571 572 5.105635 CCAGCCAGGGCACATTTATTATATG 60.106 44.000 13.63 0.00 44.88 1.78
572 573 5.018809 CCAGCCAGGGCACATTTATTATAT 58.981 41.667 13.63 0.00 44.88 0.86
573 574 4.406456 CCAGCCAGGGCACATTTATTATA 58.594 43.478 13.63 0.00 44.88 0.98
574 575 3.233507 CCAGCCAGGGCACATTTATTAT 58.766 45.455 13.63 0.00 44.88 1.28
575 576 2.665165 CCAGCCAGGGCACATTTATTA 58.335 47.619 13.63 0.00 44.88 0.98
576 577 1.488390 CCAGCCAGGGCACATTTATT 58.512 50.000 13.63 0.00 44.88 1.40
577 578 3.212377 CCAGCCAGGGCACATTTAT 57.788 52.632 13.63 0.00 44.88 1.40
578 579 4.762016 CCAGCCAGGGCACATTTA 57.238 55.556 13.63 0.00 44.88 1.40
601 602 4.169696 TAATCGTGCCTGGCCCGG 62.170 66.667 22.84 9.24 0.00 5.73
602 603 2.895372 GTAATCGTGCCTGGCCCG 60.895 66.667 17.67 17.67 0.00 6.13
603 604 2.895372 CGTAATCGTGCCTGGCCC 60.895 66.667 17.53 2.94 0.00 5.80
604 605 3.573491 GCGTAATCGTGCCTGGCC 61.573 66.667 17.53 6.66 39.49 5.36
634 635 2.044352 ATACCTGGGCAAACGGGC 60.044 61.111 0.00 0.00 40.73 6.13
635 636 0.610785 AACATACCTGGGCAAACGGG 60.611 55.000 0.00 0.00 42.81 5.28
636 637 0.808755 GAACATACCTGGGCAAACGG 59.191 55.000 0.00 0.00 0.00 4.44
637 638 1.468520 CAGAACATACCTGGGCAAACG 59.531 52.381 0.00 0.00 0.00 3.60
638 639 2.790433 TCAGAACATACCTGGGCAAAC 58.210 47.619 0.00 0.00 32.73 2.93
639 640 3.420893 CTTCAGAACATACCTGGGCAAA 58.579 45.455 0.00 0.00 32.73 3.68
640 641 2.879756 GCTTCAGAACATACCTGGGCAA 60.880 50.000 0.00 0.00 34.05 4.52
641 642 1.340017 GCTTCAGAACATACCTGGGCA 60.340 52.381 0.00 0.00 34.05 5.36
642 643 1.383523 GCTTCAGAACATACCTGGGC 58.616 55.000 0.00 0.00 32.73 5.36
643 644 1.066143 ACGCTTCAGAACATACCTGGG 60.066 52.381 0.00 0.00 32.73 4.45
644 645 2.271800 GACGCTTCAGAACATACCTGG 58.728 52.381 0.00 0.00 32.73 4.45
645 646 1.920574 CGACGCTTCAGAACATACCTG 59.079 52.381 0.00 0.00 0.00 4.00
646 647 1.736032 GCGACGCTTCAGAACATACCT 60.736 52.381 13.73 0.00 0.00 3.08
647 648 0.645868 GCGACGCTTCAGAACATACC 59.354 55.000 13.73 0.00 0.00 2.73
648 649 1.346365 TGCGACGCTTCAGAACATAC 58.654 50.000 22.08 0.00 0.00 2.39
649 650 2.073117 TTGCGACGCTTCAGAACATA 57.927 45.000 22.08 0.00 0.00 2.29
650 651 1.195448 CTTTGCGACGCTTCAGAACAT 59.805 47.619 22.08 0.00 0.00 2.71
651 652 0.581529 CTTTGCGACGCTTCAGAACA 59.418 50.000 22.08 0.00 0.00 3.18
652 653 0.859232 TCTTTGCGACGCTTCAGAAC 59.141 50.000 22.08 0.00 0.00 3.01
728 741 4.610714 GGATCCGAGCGGCTTCCC 62.611 72.222 2.97 0.00 33.75 3.97
729 742 4.610714 GGGATCCGAGCGGCTTCC 62.611 72.222 17.24 17.24 36.90 3.46
741 758 1.632920 GATGGGATTCTGGAGGGGATC 59.367 57.143 0.00 0.00 0.00 3.36
778 819 3.564027 CGCGGCCCGAATTGAGAC 61.564 66.667 7.68 0.00 40.02 3.36
814 855 1.369321 GCCTGATGGACGGATCTCC 59.631 63.158 0.00 0.00 34.57 3.71
867 908 0.246360 GTCCAAAAAGGGGCGGATTG 59.754 55.000 0.00 0.00 38.24 2.67
886 927 3.565910 GATCTAGCAGCGCCTCCCG 62.566 68.421 2.29 0.00 40.75 5.14
1200 1252 1.511850 CGCTCATGTTGAACACCAGA 58.488 50.000 0.00 0.00 0.00 3.86
1431 1492 1.961277 CTTGGACGACGGCTGCTTT 60.961 57.895 0.00 0.00 0.00 3.51
1557 1618 7.363793 GCAATTGAGTAACCAACAATAATCCCT 60.364 37.037 10.34 0.00 34.48 4.20
1563 1624 5.184864 CCAGGCAATTGAGTAACCAACAATA 59.815 40.000 10.34 0.00 34.48 1.90
1566 1627 2.890311 CCAGGCAATTGAGTAACCAACA 59.110 45.455 10.34 0.00 0.00 3.33
1572 1633 2.896685 CAAACCCCAGGCAATTGAGTAA 59.103 45.455 10.34 0.00 0.00 2.24
1578 1639 2.618794 TGAATCAAACCCCAGGCAATT 58.381 42.857 0.00 0.00 0.00 2.32
1686 1747 6.528321 TGGCTCAATCTCGATAAATCTCATT 58.472 36.000 0.00 0.00 0.00 2.57
1692 1753 5.692204 CGTAACTGGCTCAATCTCGATAAAT 59.308 40.000 0.00 0.00 0.00 1.40
1737 1798 4.742201 CTGGAGGCGACCACACCG 62.742 72.222 2.57 0.00 35.91 4.94
1741 1802 1.026718 CCATTTCTGGAGGCGACCAC 61.027 60.000 2.57 0.00 46.37 4.16
1761 1822 3.811810 GCATATCCATTTGCAGAGCCCTA 60.812 47.826 0.00 0.00 38.72 3.53
1797 1858 2.752903 AGGTCATACAAAATCCGCAACC 59.247 45.455 0.00 0.00 0.00 3.77
1940 2005 8.908786 AGACAAAAGAACTTTCACATCTGATA 57.091 30.769 0.21 0.00 31.45 2.15
1962 2032 3.341823 ACATGCATCTGGAAGTTGAGAC 58.658 45.455 0.00 0.00 35.69 3.36
2002 2072 4.278419 ACATGCTACTTCACAAAAAGGACC 59.722 41.667 0.00 0.00 0.00 4.46
2003 2073 5.438761 ACATGCTACTTCACAAAAAGGAC 57.561 39.130 0.00 0.00 0.00 3.85
2035 2109 5.244626 AGCACAAATTCCTTTACATGCTTCT 59.755 36.000 0.00 0.00 35.40 2.85
2039 2113 4.559153 ACAGCACAAATTCCTTTACATGC 58.441 39.130 0.00 0.00 31.73 4.06
2046 2120 7.112122 TCTGATATGTACAGCACAAATTCCTT 58.888 34.615 0.33 0.00 41.55 3.36
2047 2121 6.653020 TCTGATATGTACAGCACAAATTCCT 58.347 36.000 0.33 0.00 41.55 3.36
2048 2122 6.925610 TCTGATATGTACAGCACAAATTCC 57.074 37.500 0.33 0.00 41.55 3.01
2185 2276 1.051812 CTGGCCCCGATTCACTATCT 58.948 55.000 0.00 0.00 0.00 1.98
2344 2436 5.006386 ACATCTGAGATGACCAAAGAAACC 58.994 41.667 27.73 0.00 0.00 3.27
2346 2438 5.868454 TCACATCTGAGATGACCAAAGAAA 58.132 37.500 27.73 0.95 0.00 2.52
2415 2512 2.558795 ACATCCTCCATAGACGAATCCG 59.441 50.000 0.00 0.00 42.50 4.18
2419 2516 7.776618 ACAATATACATCCTCCATAGACGAA 57.223 36.000 0.00 0.00 0.00 3.85
2427 2524 9.320295 TGTACATGATACAATATACATCCTCCA 57.680 33.333 0.00 0.00 0.00 3.86
2428 2525 9.809096 CTGTACATGATACAATATACATCCTCC 57.191 37.037 0.00 0.00 0.00 4.30
2438 2535 9.987272 CTTCTCATTCCTGTACATGATACAATA 57.013 33.333 0.00 0.00 0.00 1.90
2439 2536 7.443575 GCTTCTCATTCCTGTACATGATACAAT 59.556 37.037 0.00 0.00 0.00 2.71
2440 2537 6.763135 GCTTCTCATTCCTGTACATGATACAA 59.237 38.462 0.00 0.00 0.00 2.41
2441 2538 6.127083 TGCTTCTCATTCCTGTACATGATACA 60.127 38.462 0.00 3.90 0.00 2.29
2442 2539 6.283694 TGCTTCTCATTCCTGTACATGATAC 58.716 40.000 0.00 0.00 0.00 2.24
2452 2549 6.596888 TCTTTTCTACATGCTTCTCATTCCTG 59.403 38.462 0.00 0.00 31.79 3.86
2480 2661 2.780065 TGCACAGCACAAATTCAGTC 57.220 45.000 0.00 0.00 31.71 3.51
2521 2702 7.539712 TTATAGCTTGAGTCTACACATTTGC 57.460 36.000 0.00 0.00 0.00 3.68
2522 2703 8.391106 GGTTTATAGCTTGAGTCTACACATTTG 58.609 37.037 0.00 0.00 0.00 2.32
2523 2704 8.100791 TGGTTTATAGCTTGAGTCTACACATTT 58.899 33.333 0.00 0.00 0.00 2.32
2580 2763 4.047822 GAGCGTATCAGTTCTTCATCCAG 58.952 47.826 0.00 0.00 0.00 3.86
2598 2781 0.392193 ATTGTCTGGCAGAAGGAGCG 60.392 55.000 20.62 0.00 0.00 5.03
2608 2791 0.801251 GTGACTCTGCATTGTCTGGC 59.199 55.000 16.62 6.89 34.57 4.85
2609 2792 2.074576 CTGTGACTCTGCATTGTCTGG 58.925 52.381 16.62 6.55 34.57 3.86
2610 2793 2.074576 CCTGTGACTCTGCATTGTCTG 58.925 52.381 16.62 9.20 34.57 3.51
2611 2794 1.610102 GCCTGTGACTCTGCATTGTCT 60.610 52.381 16.62 0.00 34.57 3.41
2613 2796 0.109153 TGCCTGTGACTCTGCATTGT 59.891 50.000 0.00 0.00 0.00 2.71
2615 2798 2.026915 TGTATGCCTGTGACTCTGCATT 60.027 45.455 11.06 0.00 41.40 3.56
2616 2799 1.556451 TGTATGCCTGTGACTCTGCAT 59.444 47.619 10.72 10.72 45.67 3.96
2617 2800 0.975887 TGTATGCCTGTGACTCTGCA 59.024 50.000 0.00 0.00 38.23 4.41
2618 2801 2.208431 GATGTATGCCTGTGACTCTGC 58.792 52.381 0.00 0.00 0.00 4.26
2619 2802 3.131755 TCTGATGTATGCCTGTGACTCTG 59.868 47.826 0.00 0.00 0.00 3.35
2620 2803 3.131933 GTCTGATGTATGCCTGTGACTCT 59.868 47.826 0.00 0.00 0.00 3.24
2621 2804 3.131933 AGTCTGATGTATGCCTGTGACTC 59.868 47.826 0.00 0.00 0.00 3.36
2623 2806 3.533606 AGTCTGATGTATGCCTGTGAC 57.466 47.619 0.00 0.00 0.00 3.67
2624 2807 3.261643 ACAAGTCTGATGTATGCCTGTGA 59.738 43.478 0.00 0.00 0.00 3.58
2696 2898 3.993081 CCAGAATAGCATCAGAATCGTCC 59.007 47.826 0.00 0.00 0.00 4.79
2763 2965 7.234577 AGCTCTTATATTCCTTTACAGAGGGAG 59.765 40.741 0.00 0.00 37.41 4.30
2764 2966 7.076446 AGCTCTTATATTCCTTTACAGAGGGA 58.924 38.462 0.00 0.00 37.41 4.20
2765 2967 7.309770 AGCTCTTATATTCCTTTACAGAGGG 57.690 40.000 0.00 0.00 37.41 4.30
2786 2988 9.088512 CGTGAAGAAATATAAGAGTGTTTAGCT 57.911 33.333 0.00 0.00 0.00 3.32
2787 2989 9.084164 TCGTGAAGAAATATAAGAGTGTTTAGC 57.916 33.333 0.00 0.00 0.00 3.09
2789 2991 9.582431 CCTCGTGAAGAAATATAAGAGTGTTTA 57.418 33.333 0.00 0.00 0.00 2.01
2790 2992 8.480643 CCTCGTGAAGAAATATAAGAGTGTTT 57.519 34.615 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.