Multiple sequence alignment - TraesCS3D01G392700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G392700 chr3D 100.000 5618 0 0 1 5618 508065850 508071467 0.000000e+00 10375.0
1 TraesCS3D01G392700 chr3D 86.082 388 31 11 1413 1781 280072670 280072287 4.080000e-106 396.0
2 TraesCS3D01G392700 chr3D 85.825 388 32 11 1413 1781 277238192 277238575 1.900000e-104 390.0
3 TraesCS3D01G392700 chr3B 95.032 3784 133 21 1 3735 669944228 669948005 0.000000e+00 5895.0
4 TraesCS3D01G392700 chr3B 93.224 974 33 15 3738 4696 669948151 669949106 0.000000e+00 1402.0
5 TraesCS3D01G392700 chr3B 86.099 223 30 1 5255 5477 669949872 669950093 7.270000e-59 239.0
6 TraesCS3D01G392700 chr3A 93.578 3083 126 35 639 3680 645601944 645604995 0.000000e+00 4530.0
7 TraesCS3D01G392700 chr3A 92.617 921 47 10 3709 4611 645604994 645605911 0.000000e+00 1304.0
8 TraesCS3D01G392700 chr3A 80.769 650 79 18 1 633 645601216 645601836 3.070000e-127 466.0
9 TraesCS3D01G392700 chr7D 85.567 388 33 11 1413 1781 607197442 607197825 8.830000e-103 385.0
10 TraesCS3D01G392700 chr5D 85.567 388 33 11 1413 1781 504228105 504228488 8.830000e-103 385.0
11 TraesCS3D01G392700 chr5D 74.694 245 43 12 5385 5615 357373108 357372869 2.160000e-14 91.6
12 TraesCS3D01G392700 chr4D 85.309 388 34 11 1413 1781 67197092 67196709 4.110000e-101 379.0
13 TraesCS3D01G392700 chrUn 85.052 388 35 10 1413 1781 88675858 88675475 1.910000e-99 374.0
14 TraesCS3D01G392700 chr1B 84.536 388 38 5 1413 1781 107918815 107918431 1.150000e-96 364.0
15 TraesCS3D01G392700 chr2B 93.333 60 4 0 3658 3717 74201783 74201842 7.750000e-14 89.8
16 TraesCS3D01G392700 chr2B 95.918 49 2 0 3671 3719 406085501 406085549 4.670000e-11 80.5
17 TraesCS3D01G392700 chr2B 87.500 64 8 0 3656 3719 156390759 156390822 2.170000e-09 75.0
18 TraesCS3D01G392700 chr4A 91.935 62 5 0 3658 3719 467684310 467684249 2.790000e-13 87.9
19 TraesCS3D01G392700 chr2A 91.935 62 5 0 3658 3719 186440963 186441024 2.790000e-13 87.9
20 TraesCS3D01G392700 chr7B 94.545 55 3 0 3661 3715 447707417 447707471 1.000000e-12 86.1
21 TraesCS3D01G392700 chr7A 87.879 66 8 0 3654 3719 659654585 659654650 1.680000e-10 78.7
22 TraesCS3D01G392700 chr1D 87.302 63 6 2 3658 3719 106839620 106839559 2.810000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G392700 chr3D 508065850 508071467 5617 False 10375 10375 100.000000 1 5618 1 chr3D.!!$F2 5617
1 TraesCS3D01G392700 chr3B 669944228 669950093 5865 False 2512 5895 91.451667 1 5477 3 chr3B.!!$F1 5476
2 TraesCS3D01G392700 chr3A 645601216 645605911 4695 False 2100 4530 88.988000 1 4611 3 chr3A.!!$F1 4610

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
763 895 0.318955 ACCCGTTCGGAGTACAAACG 60.319 55.000 13.08 12.83 43.92 3.60 F
1314 1450 0.784495 ACCATCTAGATCCGCCCCTA 59.216 55.000 1.03 0.00 0.00 3.53 F
1792 1937 0.972134 TTCTCTGTGCCTCCTGTGAG 59.028 55.000 0.00 0.00 38.42 3.51 F
2473 2618 0.753867 TACTGACCTTGTTGCCGACA 59.246 50.000 0.00 0.00 36.19 4.35 F
4101 4427 1.143684 AGGTGGCTTCATGAACAGTGT 59.856 47.619 3.38 0.00 0.00 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1803 1948 0.792640 AAACGAGCACTCATCGCTTG 59.207 50.000 0.00 0.0 43.91 4.01 R
2473 2618 1.909302 AGTGGGATTCTGAACGTCCAT 59.091 47.619 11.15 0.0 33.62 3.41 R
3498 3673 0.883833 CAATGCCCACTTCAGTGTCC 59.116 55.000 6.22 0.0 44.21 4.02 R
4141 4467 0.687354 TCCTGCTGAAGTCTTCACCC 59.313 55.000 11.36 6.4 35.46 4.61 R
5533 6173 0.550914 AAGTTTGCTCCACTGGGACA 59.449 50.000 0.00 0.0 38.64 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
192 194 3.207669 GGCATCTTGCGCAGAGGG 61.208 66.667 11.31 8.31 46.21 4.30
262 274 5.189180 AGGGAAATGATAACTTGAGCTCAC 58.811 41.667 18.03 4.16 0.00 3.51
305 322 1.244816 GAAGAAAAAGACCACCGGGG 58.755 55.000 6.32 0.00 44.81 5.73
649 779 9.857656 TGATTTATTTCTCTGCCTATTTCATCT 57.142 29.630 0.00 0.00 0.00 2.90
745 877 8.603983 TTTTTAATCGTGTCTTGTACAAACAC 57.396 30.769 26.81 26.81 40.63 3.32
763 895 0.318955 ACCCGTTCGGAGTACAAACG 60.319 55.000 13.08 12.83 43.92 3.60
780 912 1.589803 ACGTAAACAGAGGCACAACC 58.410 50.000 0.00 0.00 39.61 3.77
890 1022 1.139654 TCCGAATCCAGCTCAATCCAG 59.860 52.381 0.00 0.00 0.00 3.86
895 1027 1.229359 CCAGCTCAATCCAGGCCAT 59.771 57.895 5.01 0.00 0.00 4.40
1314 1450 0.784495 ACCATCTAGATCCGCCCCTA 59.216 55.000 1.03 0.00 0.00 3.53
1322 1458 1.202818 AGATCCGCCCCTAATTTCTGC 60.203 52.381 0.00 0.00 0.00 4.26
1324 1460 2.186826 CCGCCCCTAATTTCTGCCG 61.187 63.158 0.00 0.00 0.00 5.69
1540 1676 4.699522 GACAGAAGCCCCGCGGTT 62.700 66.667 26.12 12.41 33.99 4.44
1568 1704 7.330900 ACTTTCTAGAATCTGCATTTGGATG 57.669 36.000 5.89 0.00 36.32 3.51
1581 1717 2.157834 TTGGATGTGTAGTTCGCGTT 57.842 45.000 5.77 0.00 0.00 4.84
1600 1744 5.004345 CGCGTTGTCAAAGAAAATTGTTCTT 59.996 36.000 0.00 0.00 40.20 2.52
1671 1816 6.663093 TCATGCTACCTTTTTGTATCCATGTT 59.337 34.615 0.00 0.00 34.86 2.71
1739 1884 2.542907 AACACAAGCAGGAACCGCG 61.543 57.895 0.00 0.00 0.00 6.46
1740 1885 2.972505 CACAAGCAGGAACCGCGT 60.973 61.111 4.92 0.00 0.00 6.01
1778 1923 1.985895 CCCCAAGTGGTAGGTTTCTCT 59.014 52.381 0.00 0.00 0.00 3.10
1792 1937 0.972134 TTCTCTGTGCCTCCTGTGAG 59.028 55.000 0.00 0.00 38.42 3.51
1803 1948 3.491792 GCCTCCTGTGAGCAGACTATTAC 60.492 52.174 0.00 0.00 45.28 1.89
1840 1985 6.198966 GCTCGTTTTGATCAACATCTTTTTGT 59.801 34.615 7.89 0.00 0.00 2.83
1919 2064 3.007635 AGACCAGGCGCATAAGTTTTAC 58.992 45.455 10.83 0.00 0.00 2.01
1996 2141 3.317993 ACAACATTGCCTGTAAGTTCCAC 59.682 43.478 0.00 0.00 36.98 4.02
2019 2164 4.085107 CGGAAATTTGTTGCTACAACTTGC 60.085 41.667 13.36 12.51 43.66 4.01
2042 2187 6.769341 TGCACGACCTTACTCTTGACTATATA 59.231 38.462 0.00 0.00 0.00 0.86
2473 2618 0.753867 TACTGACCTTGTTGCCGACA 59.246 50.000 0.00 0.00 36.19 4.35
2525 2670 4.274950 CACAACTGTTCAAAGTAACCCGAT 59.725 41.667 0.00 0.00 0.00 4.18
2560 2705 5.567423 GCAGTTGAAAATAAGGTTGAGCCAT 60.567 40.000 0.00 0.00 40.61 4.40
2739 2887 6.036470 TGTCACTAAGAAGACTTATGCATCG 58.964 40.000 0.19 0.00 37.85 3.84
2954 3127 4.020617 CCTGCGACCAAGCCTCCA 62.021 66.667 0.00 0.00 36.02 3.86
2989 3162 6.076981 TGAAGGTTCAGAAAAATCTTCTGC 57.923 37.500 9.19 0.00 43.68 4.26
2997 3170 4.922103 CAGAAAAATCTTCTGCAAAGCCTC 59.078 41.667 1.80 0.00 39.36 4.70
3051 3224 5.147162 CGAGTGTTGCCAAGAATAAAACTC 58.853 41.667 0.00 0.00 0.00 3.01
3081 3254 7.227873 TGATGGTTGGTTATGACTTTGACTTA 58.772 34.615 0.00 0.00 0.00 2.24
3422 3597 6.232692 GGTATGCCTATACCGGACAAATTAA 58.767 40.000 9.46 0.00 46.83 1.40
3498 3673 4.763793 CAGGCATCTCCACTTTATATTGGG 59.236 45.833 0.00 0.00 37.29 4.12
3551 3726 2.230508 CCAGTACGAGAGGTAAGCAACA 59.769 50.000 0.00 0.00 31.61 3.33
3557 3732 3.767673 ACGAGAGGTAAGCAACATTCCTA 59.232 43.478 0.00 0.00 0.00 2.94
3620 3795 7.531857 TTGGTTTCTATGCATCTTGGTTTTA 57.468 32.000 0.19 0.00 0.00 1.52
3678 3853 7.073208 TGTGTACTCCCTCTGATCCATATTAA 58.927 38.462 0.00 0.00 0.00 1.40
3695 3870 9.173021 TCCATATTAATTGTCGTTCAAACAGAT 57.827 29.630 0.00 0.00 39.62 2.90
3696 3871 9.225201 CCATATTAATTGTCGTTCAAACAGATG 57.775 33.333 0.00 0.00 39.62 2.90
3797 4115 7.539712 GCAATGTTGTGCTTCTCTACTAATA 57.460 36.000 0.00 0.00 41.51 0.98
3893 4217 4.381292 GGAATGCTTCCCATGAGTTTCTTG 60.381 45.833 0.00 0.00 44.30 3.02
3897 4221 3.560025 GCTTCCCATGAGTTTCTTGGAGA 60.560 47.826 11.37 5.68 42.46 3.71
3932 4256 9.522804 TTTATTTTCAAGATGTTGTGTGGTTAC 57.477 29.630 2.11 0.00 34.98 2.50
4021 4347 1.888512 GGTGTTGTCATGAATGCTGGT 59.111 47.619 0.00 0.00 0.00 4.00
4089 4415 4.658786 AGGACGGGGAGGTGGCTT 62.659 66.667 0.00 0.00 0.00 4.35
4101 4427 1.143684 AGGTGGCTTCATGAACAGTGT 59.856 47.619 3.38 0.00 0.00 3.55
4141 4467 0.969894 ACTTCAACAGGAGGGACGAG 59.030 55.000 0.00 0.00 0.00 4.18
4555 4893 3.857093 GTGTTGCGAAAATTGAACTGTGT 59.143 39.130 0.00 0.00 0.00 3.72
4559 4897 2.964768 GCGAAAATTGAACTGTGTCGAC 59.035 45.455 9.11 9.11 0.00 4.20
4606 4944 3.385577 GAAGCGAAGTTCTGTTCTGTCT 58.614 45.455 0.56 0.00 0.00 3.41
4608 4946 3.385577 AGCGAAGTTCTGTTCTGTCTTC 58.614 45.455 0.56 0.00 33.48 2.87
4610 4948 3.743396 GCGAAGTTCTGTTCTGTCTTCAT 59.257 43.478 0.56 0.00 35.63 2.57
4611 4949 4.143221 GCGAAGTTCTGTTCTGTCTTCATC 60.143 45.833 0.56 0.00 35.63 2.92
4613 4951 5.463392 CGAAGTTCTGTTCTGTCTTCATCAA 59.537 40.000 0.56 0.00 35.63 2.57
4615 4953 7.329471 CGAAGTTCTGTTCTGTCTTCATCAATA 59.671 37.037 0.56 0.00 35.63 1.90
4616 4954 9.160496 GAAGTTCTGTTCTGTCTTCATCAATAT 57.840 33.333 0.00 0.00 35.85 1.28
4617 4955 9.512588 AAGTTCTGTTCTGTCTTCATCAATATT 57.487 29.630 0.00 0.00 0.00 1.28
4618 4956 9.512588 AGTTCTGTTCTGTCTTCATCAATATTT 57.487 29.630 0.00 0.00 0.00 1.40
4619 4957 9.552114 GTTCTGTTCTGTCTTCATCAATATTTG 57.448 33.333 0.00 0.00 0.00 2.32
4620 4958 8.853077 TCTGTTCTGTCTTCATCAATATTTGT 57.147 30.769 0.00 0.00 0.00 2.83
4621 4959 8.724229 TCTGTTCTGTCTTCATCAATATTTGTG 58.276 33.333 0.00 0.00 0.00 3.33
4624 4962 9.121517 GTTCTGTCTTCATCAATATTTGTGTTG 57.878 33.333 0.00 0.00 0.00 3.33
4626 4964 8.506437 TCTGTCTTCATCAATATTTGTGTTGTC 58.494 33.333 0.00 0.00 0.00 3.18
4627 4965 8.164058 TGTCTTCATCAATATTTGTGTTGTCA 57.836 30.769 0.00 0.00 0.00 3.58
4628 4966 8.795513 TGTCTTCATCAATATTTGTGTTGTCAT 58.204 29.630 0.00 0.00 0.00 3.06
4632 4970 9.978044 TTCATCAATATTTGTGTTGTCATTTGA 57.022 25.926 0.00 0.00 0.00 2.69
4636 4974 9.761504 TCAATATTTGTGTTGTCATTTGATGTT 57.238 25.926 0.00 0.00 0.00 2.71
4638 4976 8.761575 ATATTTGTGTTGTCATTTGATGTTCC 57.238 30.769 0.00 0.00 0.00 3.62
4639 4977 4.221926 TGTGTTGTCATTTGATGTTCCG 57.778 40.909 0.00 0.00 0.00 4.30
4645 4983 5.766150 TGTCATTTGATGTTCCGTTTTCT 57.234 34.783 0.00 0.00 0.00 2.52
4646 4984 5.757886 TGTCATTTGATGTTCCGTTTTCTC 58.242 37.500 0.00 0.00 0.00 2.87
4650 4988 6.917477 TCATTTGATGTTCCGTTTTCTCTTTG 59.083 34.615 0.00 0.00 0.00 2.77
4657 4995 4.875544 TCCGTTTTCTCTTTGACACTTG 57.124 40.909 0.00 0.00 0.00 3.16
4664 5002 4.415881 TCTCTTTGACACTTGGCTGTTA 57.584 40.909 0.00 0.00 0.00 2.41
4670 5008 2.102757 TGACACTTGGCTGTTACCGTTA 59.897 45.455 0.00 0.00 0.00 3.18
4671 5009 3.244284 TGACACTTGGCTGTTACCGTTAT 60.244 43.478 0.00 0.00 0.00 1.89
4672 5010 3.332034 ACACTTGGCTGTTACCGTTATC 58.668 45.455 0.00 0.00 0.00 1.75
4689 5027 6.072397 ACCGTTATCATCGTTTGGATTGAAAA 60.072 34.615 0.00 0.00 31.28 2.29
4690 5028 6.972328 CCGTTATCATCGTTTGGATTGAAAAT 59.028 34.615 0.00 0.00 31.28 1.82
4691 5029 8.126074 CCGTTATCATCGTTTGGATTGAAAATA 58.874 33.333 0.00 0.00 31.28 1.40
4692 5030 9.158364 CGTTATCATCGTTTGGATTGAAAATAG 57.842 33.333 0.00 0.00 31.28 1.73
4697 5035 9.878667 TCATCGTTTGGATTGAAAATAGTACTA 57.121 29.630 4.77 4.77 31.28 1.82
4699 5037 8.712285 TCGTTTGGATTGAAAATAGTACTAGG 57.288 34.615 8.85 0.00 0.00 3.02
4700 5038 8.533657 TCGTTTGGATTGAAAATAGTACTAGGA 58.466 33.333 8.85 0.00 0.00 2.94
4701 5039 8.818057 CGTTTGGATTGAAAATAGTACTAGGAG 58.182 37.037 8.85 0.00 0.00 3.69
4702 5040 9.110502 GTTTGGATTGAAAATAGTACTAGGAGG 57.889 37.037 8.85 0.00 0.00 4.30
4704 5042 8.388656 TGGATTGAAAATAGTACTAGGAGGTT 57.611 34.615 8.85 0.00 0.00 3.50
4706 5044 8.265764 GGATTGAAAATAGTACTAGGAGGTTGT 58.734 37.037 8.85 0.00 0.00 3.32
4707 5045 9.099454 GATTGAAAATAGTACTAGGAGGTTGTG 57.901 37.037 8.85 0.00 0.00 3.33
4709 5047 6.727231 TGAAAATAGTACTAGGAGGTTGTGGA 59.273 38.462 8.85 0.00 0.00 4.02
4710 5048 7.402071 TGAAAATAGTACTAGGAGGTTGTGGAT 59.598 37.037 8.85 0.00 0.00 3.41
4711 5049 8.849543 AAAATAGTACTAGGAGGTTGTGGATA 57.150 34.615 8.85 0.00 0.00 2.59
4712 5050 7.836479 AATAGTACTAGGAGGTTGTGGATAC 57.164 40.000 8.85 0.00 0.00 2.24
4727 5065 4.632538 TGGATACACACATCTCACGTAG 57.367 45.455 0.00 0.00 46.17 3.51
4728 5066 4.014406 TGGATACACACATCTCACGTAGT 58.986 43.478 0.00 0.00 46.17 2.73
4729 5067 4.461431 TGGATACACACATCTCACGTAGTT 59.539 41.667 0.00 0.00 46.17 2.24
4730 5068 5.035443 GGATACACACATCTCACGTAGTTC 58.965 45.833 0.00 0.00 41.61 3.01
4731 5069 5.392703 GGATACACACATCTCACGTAGTTCA 60.393 44.000 0.00 0.00 41.61 3.18
4732 5070 4.316205 ACACACATCTCACGTAGTTCAA 57.684 40.909 0.00 0.00 41.61 2.69
4733 5071 4.049186 ACACACATCTCACGTAGTTCAAC 58.951 43.478 0.00 0.00 41.61 3.18
4734 5072 4.202121 ACACACATCTCACGTAGTTCAACT 60.202 41.667 0.00 0.00 41.61 3.16
4735 5073 5.009310 ACACACATCTCACGTAGTTCAACTA 59.991 40.000 0.00 0.00 41.61 2.24
4736 5074 6.093404 CACACATCTCACGTAGTTCAACTAT 58.907 40.000 0.00 0.00 41.61 2.12
4737 5075 6.033937 CACACATCTCACGTAGTTCAACTATG 59.966 42.308 14.31 14.31 41.61 2.23
4739 5077 6.586463 CACATCTCACGTAGTTCAACTATGTT 59.414 38.462 18.26 3.21 45.80 2.71
4740 5078 6.586463 ACATCTCACGTAGTTCAACTATGTTG 59.414 38.462 18.26 15.89 45.80 3.33
4741 5079 5.466819 TCTCACGTAGTTCAACTATGTTGG 58.533 41.667 18.26 13.77 45.80 3.77
4742 5080 5.242171 TCTCACGTAGTTCAACTATGTTGGA 59.758 40.000 18.26 15.48 45.80 3.53
4743 5081 6.032956 TCACGTAGTTCAACTATGTTGGAT 57.967 37.500 18.26 0.00 45.80 3.41
4744 5082 5.867174 TCACGTAGTTCAACTATGTTGGATG 59.133 40.000 18.26 8.45 45.80 3.51
4745 5083 5.637810 CACGTAGTTCAACTATGTTGGATGT 59.362 40.000 18.26 0.00 45.80 3.06
4756 5094 1.068402 TGTTGGATGTGAATTGCTGCG 60.068 47.619 0.00 0.00 0.00 5.18
4763 5101 1.194495 GTGAATTGCTGCGCTAATGC 58.806 50.000 9.73 8.62 0.00 3.56
4764 5102 0.810016 TGAATTGCTGCGCTAATGCA 59.190 45.000 9.73 11.32 43.95 3.96
4778 5116 5.618195 GCGCTAATGCAGTGTTTTTACCTTA 60.618 40.000 0.00 0.00 39.64 2.69
4785 5123 7.575414 TGCAGTGTTTTTACCTTAGATTCAA 57.425 32.000 0.00 0.00 0.00 2.69
4787 5125 7.067615 TGCAGTGTTTTTACCTTAGATTCAACA 59.932 33.333 0.00 0.00 0.00 3.33
4788 5126 7.378728 GCAGTGTTTTTACCTTAGATTCAACAC 59.621 37.037 0.00 0.00 41.92 3.32
4804 5142 5.138800 TCAACACTTATATCTTTTCGCGC 57.861 39.130 0.00 0.00 0.00 6.86
4805 5143 4.868171 TCAACACTTATATCTTTTCGCGCT 59.132 37.500 5.56 0.00 0.00 5.92
4806 5144 5.350365 TCAACACTTATATCTTTTCGCGCTT 59.650 36.000 5.56 0.00 0.00 4.68
4808 5146 4.868171 ACACTTATATCTTTTCGCGCTTCA 59.132 37.500 5.56 0.00 0.00 3.02
4809 5147 5.005779 ACACTTATATCTTTTCGCGCTTCAG 59.994 40.000 5.56 0.00 0.00 3.02
4811 5149 5.581085 ACTTATATCTTTTCGCGCTTCAGTT 59.419 36.000 5.56 0.00 0.00 3.16
4812 5150 2.601481 ATCTTTTCGCGCTTCAGTTG 57.399 45.000 5.56 0.00 0.00 3.16
4813 5151 1.295792 TCTTTTCGCGCTTCAGTTGT 58.704 45.000 5.56 0.00 0.00 3.32
4814 5152 1.003972 TCTTTTCGCGCTTCAGTTGTG 60.004 47.619 5.56 0.00 0.00 3.33
4815 5153 0.591236 TTTTCGCGCTTCAGTTGTGC 60.591 50.000 5.56 0.00 37.55 4.57
4816 5154 1.710103 TTTCGCGCTTCAGTTGTGCA 61.710 50.000 5.56 0.00 40.54 4.57
4817 5155 2.373524 TTCGCGCTTCAGTTGTGCAC 62.374 55.000 10.75 10.75 40.54 4.57
4818 5156 2.715005 GCGCTTCAGTTGTGCACA 59.285 55.556 17.42 17.42 40.28 4.57
4819 5157 1.283793 GCGCTTCAGTTGTGCACAT 59.716 52.632 22.39 3.15 40.28 3.21
4820 5158 0.318107 GCGCTTCAGTTGTGCACATT 60.318 50.000 22.39 9.58 40.28 2.71
4821 5159 1.678360 CGCTTCAGTTGTGCACATTC 58.322 50.000 22.39 16.57 0.00 2.67
4822 5160 1.002576 CGCTTCAGTTGTGCACATTCA 60.003 47.619 22.39 2.25 0.00 2.57
4823 5161 2.658285 GCTTCAGTTGTGCACATTCAG 58.342 47.619 22.39 13.61 0.00 3.02
4824 5162 2.033801 GCTTCAGTTGTGCACATTCAGT 59.966 45.455 22.39 5.89 0.00 3.41
4825 5163 3.851105 GCTTCAGTTGTGCACATTCAGTC 60.851 47.826 22.39 7.37 0.00 3.51
4826 5164 3.198409 TCAGTTGTGCACATTCAGTCT 57.802 42.857 22.39 9.46 0.00 3.24
4827 5165 3.133691 TCAGTTGTGCACATTCAGTCTC 58.866 45.455 22.39 4.33 0.00 3.36
4828 5166 2.874086 CAGTTGTGCACATTCAGTCTCA 59.126 45.455 22.39 0.00 0.00 3.27
4830 5168 3.562973 AGTTGTGCACATTCAGTCTCAAG 59.437 43.478 22.39 0.00 0.00 3.02
4831 5169 1.875514 TGTGCACATTCAGTCTCAAGC 59.124 47.619 17.42 0.00 0.00 4.01
4832 5170 1.875514 GTGCACATTCAGTCTCAAGCA 59.124 47.619 13.17 0.00 0.00 3.91
4833 5171 2.095869 GTGCACATTCAGTCTCAAGCAG 60.096 50.000 13.17 0.00 0.00 4.24
4834 5172 2.149578 GCACATTCAGTCTCAAGCAGT 58.850 47.619 0.00 0.00 0.00 4.40
4835 5173 2.551459 GCACATTCAGTCTCAAGCAGTT 59.449 45.455 0.00 0.00 0.00 3.16
4836 5174 3.608707 GCACATTCAGTCTCAAGCAGTTG 60.609 47.826 0.00 0.00 34.67 3.16
4837 5175 3.811497 CACATTCAGTCTCAAGCAGTTGA 59.189 43.478 0.00 0.00 40.55 3.18
4845 5183 2.325583 TCAAGCAGTTGAGTCCGTTT 57.674 45.000 0.00 0.00 37.79 3.60
4848 5186 1.871080 AGCAGTTGAGTCCGTTTCAG 58.129 50.000 0.00 0.00 0.00 3.02
4849 5187 0.868406 GCAGTTGAGTCCGTTTCAGG 59.132 55.000 0.00 0.00 0.00 3.86
4850 5188 1.540363 GCAGTTGAGTCCGTTTCAGGA 60.540 52.381 0.00 0.00 38.11 3.86
4851 5189 2.872038 GCAGTTGAGTCCGTTTCAGGAT 60.872 50.000 0.00 0.00 43.04 3.24
4852 5190 2.738846 CAGTTGAGTCCGTTTCAGGATG 59.261 50.000 0.00 0.00 43.04 3.51
4853 5191 2.076863 GTTGAGTCCGTTTCAGGATGG 58.923 52.381 0.00 0.00 43.04 3.51
4854 5192 0.613260 TGAGTCCGTTTCAGGATGGG 59.387 55.000 0.00 0.00 43.04 4.00
4855 5193 0.744771 GAGTCCGTTTCAGGATGGGC 60.745 60.000 0.00 0.00 43.04 5.36
4856 5194 1.002624 GTCCGTTTCAGGATGGGCA 60.003 57.895 0.00 0.00 43.04 5.36
4857 5195 1.026718 GTCCGTTTCAGGATGGGCAG 61.027 60.000 0.00 0.00 43.04 4.85
4858 5196 1.750399 CCGTTTCAGGATGGGCAGG 60.750 63.158 0.00 0.00 36.16 4.85
4859 5197 2.409870 CGTTTCAGGATGGGCAGGC 61.410 63.158 0.00 0.00 36.16 4.85
4860 5198 2.054453 GTTTCAGGATGGGCAGGCC 61.054 63.158 5.91 5.91 36.16 5.19
4861 5199 2.240918 TTTCAGGATGGGCAGGCCT 61.241 57.895 15.38 0.00 36.16 5.19
4862 5200 1.803453 TTTCAGGATGGGCAGGCCTT 61.803 55.000 15.38 8.01 36.16 4.35
4863 5201 1.803453 TTCAGGATGGGCAGGCCTTT 61.803 55.000 15.38 1.18 36.16 3.11
4864 5202 2.056223 CAGGATGGGCAGGCCTTTG 61.056 63.158 15.38 0.00 36.10 2.77
4865 5203 2.761213 GGATGGGCAGGCCTTTGG 60.761 66.667 15.38 0.00 36.10 3.28
4866 5204 2.037847 GATGGGCAGGCCTTTGGT 59.962 61.111 15.38 0.00 36.10 3.67
4867 5205 2.037847 ATGGGCAGGCCTTTGGTC 59.962 61.111 15.38 0.00 36.10 4.02
4868 5206 2.786512 GATGGGCAGGCCTTTGGTCA 62.787 60.000 15.38 0.00 36.10 4.02
4869 5207 2.991540 GGGCAGGCCTTTGGTCAC 60.992 66.667 0.00 0.00 36.10 3.67
4870 5208 2.116125 GGCAGGCCTTTGGTCACT 59.884 61.111 0.00 0.00 0.00 3.41
4871 5209 2.270986 GGCAGGCCTTTGGTCACTG 61.271 63.158 0.00 0.00 0.00 3.66
4872 5210 2.924105 GCAGGCCTTTGGTCACTGC 61.924 63.158 0.00 0.00 46.24 4.40
4873 5211 1.529010 CAGGCCTTTGGTCACTGCA 60.529 57.895 0.00 0.00 0.00 4.41
4874 5212 1.228367 AGGCCTTTGGTCACTGCAG 60.228 57.895 13.48 13.48 0.00 4.41
4875 5213 2.647297 GCCTTTGGTCACTGCAGC 59.353 61.111 15.27 0.00 0.00 5.25
4876 5214 2.949106 CCTTTGGTCACTGCAGCG 59.051 61.111 15.27 3.95 0.00 5.18
4877 5215 2.253452 CTTTGGTCACTGCAGCGC 59.747 61.111 15.27 0.00 0.00 5.92
4878 5216 2.203195 TTTGGTCACTGCAGCGCT 60.203 55.556 15.27 2.64 0.00 5.92
4879 5217 0.950555 CTTTGGTCACTGCAGCGCTA 60.951 55.000 15.27 0.00 0.00 4.26
4880 5218 0.950555 TTTGGTCACTGCAGCGCTAG 60.951 55.000 15.27 7.82 0.00 3.42
4881 5219 3.191539 GGTCACTGCAGCGCTAGC 61.192 66.667 15.27 17.19 45.58 3.42
4926 5264 6.183360 TGCAGTTCAGAAAGCAGGAAAATAAA 60.183 34.615 7.31 0.00 32.48 1.40
4928 5266 7.386025 GCAGTTCAGAAAGCAGGAAAATAAATT 59.614 33.333 4.38 0.00 0.00 1.82
4929 5267 8.706035 CAGTTCAGAAAGCAGGAAAATAAATTG 58.294 33.333 0.00 0.00 0.00 2.32
4932 5270 7.092716 TCAGAAAGCAGGAAAATAAATTGAGC 58.907 34.615 0.00 0.00 0.00 4.26
4935 5273 5.726980 AGCAGGAAAATAAATTGAGCACA 57.273 34.783 0.00 0.00 0.00 4.57
4937 5275 5.928264 AGCAGGAAAATAAATTGAGCACAAC 59.072 36.000 0.00 0.00 38.90 3.32
4938 5276 5.120674 GCAGGAAAATAAATTGAGCACAACC 59.879 40.000 0.00 0.00 38.90 3.77
4939 5277 5.345741 CAGGAAAATAAATTGAGCACAACCG 59.654 40.000 0.00 0.00 38.90 4.44
4940 5278 4.625311 GGAAAATAAATTGAGCACAACCGG 59.375 41.667 0.00 0.00 38.90 5.28
4941 5279 4.864704 AAATAAATTGAGCACAACCGGT 57.135 36.364 0.00 0.00 38.90 5.28
4942 5280 4.864704 AATAAATTGAGCACAACCGGTT 57.135 36.364 15.86 15.86 38.90 4.44
4943 5281 4.864704 ATAAATTGAGCACAACCGGTTT 57.135 36.364 19.55 2.13 38.90 3.27
4945 5283 3.915437 AATTGAGCACAACCGGTTTAG 57.085 42.857 19.55 14.28 38.90 1.85
4967 5319 1.946768 CACCGAAACAGAAGAAGGCAA 59.053 47.619 0.00 0.00 0.00 4.52
4970 5322 2.287009 CCGAAACAGAAGAAGGCAACAC 60.287 50.000 0.00 0.00 41.41 3.32
4971 5323 2.614057 CGAAACAGAAGAAGGCAACACT 59.386 45.455 0.00 0.00 41.41 3.55
4973 5325 4.084328 CGAAACAGAAGAAGGCAACACTAG 60.084 45.833 0.00 0.00 41.41 2.57
4974 5326 2.772287 ACAGAAGAAGGCAACACTAGC 58.228 47.619 0.00 0.00 41.41 3.42
4975 5327 2.370189 ACAGAAGAAGGCAACACTAGCT 59.630 45.455 0.00 0.00 41.41 3.32
4976 5328 3.181450 ACAGAAGAAGGCAACACTAGCTT 60.181 43.478 0.00 0.00 41.41 3.74
4977 5329 3.434984 CAGAAGAAGGCAACACTAGCTTC 59.565 47.826 0.00 0.00 41.41 3.86
4979 5331 3.778954 AGAAGGCAACACTAGCTTCTT 57.221 42.857 0.00 0.00 41.41 2.52
4980 5332 3.406764 AGAAGGCAACACTAGCTTCTTG 58.593 45.455 0.00 0.00 41.41 3.02
4981 5333 2.191128 AGGCAACACTAGCTTCTTGG 57.809 50.000 0.00 0.00 41.41 3.61
4982 5334 1.168714 GGCAACACTAGCTTCTTGGG 58.831 55.000 0.00 0.00 0.00 4.12
4984 5336 1.537202 GCAACACTAGCTTCTTGGGTG 59.463 52.381 0.00 0.00 0.00 4.61
4985 5337 2.851195 CAACACTAGCTTCTTGGGTGT 58.149 47.619 0.00 0.00 41.95 4.16
4986 5338 3.577805 AACACTAGCTTCTTGGGTGTT 57.422 42.857 0.00 0.00 43.38 3.32
4987 5339 3.577805 ACACTAGCTTCTTGGGTGTTT 57.422 42.857 0.00 0.00 37.80 2.83
4988 5340 3.898482 ACACTAGCTTCTTGGGTGTTTT 58.102 40.909 0.00 0.00 37.80 2.43
4989 5341 4.278310 ACACTAGCTTCTTGGGTGTTTTT 58.722 39.130 0.00 0.00 37.80 1.94
4990 5342 4.338400 ACACTAGCTTCTTGGGTGTTTTTC 59.662 41.667 0.00 0.00 37.80 2.29
4991 5343 4.580580 CACTAGCTTCTTGGGTGTTTTTCT 59.419 41.667 0.00 0.00 0.00 2.52
4992 5344 4.822350 ACTAGCTTCTTGGGTGTTTTTCTC 59.178 41.667 0.00 0.00 0.00 2.87
4993 5345 3.631250 AGCTTCTTGGGTGTTTTTCTCA 58.369 40.909 0.00 0.00 0.00 3.27
4994 5346 4.023291 AGCTTCTTGGGTGTTTTTCTCAA 58.977 39.130 0.00 0.00 0.00 3.02
4995 5347 4.466015 AGCTTCTTGGGTGTTTTTCTCAAA 59.534 37.500 0.00 0.00 0.00 2.69
4996 5348 4.805719 GCTTCTTGGGTGTTTTTCTCAAAG 59.194 41.667 0.00 0.00 0.00 2.77
4998 5350 5.576447 TCTTGGGTGTTTTTCTCAAAGTC 57.424 39.130 0.00 0.00 0.00 3.01
5000 5352 5.478679 TCTTGGGTGTTTTTCTCAAAGTCAA 59.521 36.000 0.00 0.00 0.00 3.18
5001 5353 5.730296 TGGGTGTTTTTCTCAAAGTCAAA 57.270 34.783 0.00 0.00 0.00 2.69
5002 5354 6.102897 TGGGTGTTTTTCTCAAAGTCAAAA 57.897 33.333 0.00 0.00 0.00 2.44
5004 5356 5.929415 GGGTGTTTTTCTCAAAGTCAAAACA 59.071 36.000 5.22 5.22 43.47 2.83
5007 5359 7.636259 TGTTTTTCTCAAAGTCAAAACACAG 57.364 32.000 5.22 0.00 41.77 3.66
5010 5362 5.957842 TTCTCAAAGTCAAAACACAGTGT 57.042 34.783 0.00 0.00 0.00 3.55
5011 5363 7.441890 TTTCTCAAAGTCAAAACACAGTGTA 57.558 32.000 6.63 0.00 0.00 2.90
5012 5364 7.441890 TTCTCAAAGTCAAAACACAGTGTAA 57.558 32.000 6.63 0.00 0.00 2.41
5013 5365 7.441890 TCTCAAAGTCAAAACACAGTGTAAA 57.558 32.000 6.63 0.00 0.00 2.01
5014 5366 7.877003 TCTCAAAGTCAAAACACAGTGTAAAA 58.123 30.769 6.63 0.00 0.00 1.52
5015 5367 8.519526 TCTCAAAGTCAAAACACAGTGTAAAAT 58.480 29.630 6.63 0.00 0.00 1.82
5016 5368 8.459521 TCAAAGTCAAAACACAGTGTAAAATG 57.540 30.769 6.63 4.29 0.00 2.32
5017 5369 7.543868 TCAAAGTCAAAACACAGTGTAAAATGG 59.456 33.333 6.63 0.00 0.00 3.16
5018 5370 6.524101 AGTCAAAACACAGTGTAAAATGGT 57.476 33.333 6.63 0.00 0.00 3.55
5020 5372 7.033185 AGTCAAAACACAGTGTAAAATGGTTC 58.967 34.615 6.63 0.41 0.00 3.62
5022 5374 6.809196 TCAAAACACAGTGTAAAATGGTTCAC 59.191 34.615 6.63 0.00 0.00 3.18
5023 5375 6.524101 AAACACAGTGTAAAATGGTTCACT 57.476 33.333 6.63 0.00 41.02 3.41
5024 5376 5.751243 ACACAGTGTAAAATGGTTCACTC 57.249 39.130 3.69 0.00 38.79 3.51
5025 5377 5.437060 ACACAGTGTAAAATGGTTCACTCT 58.563 37.500 3.69 0.00 38.79 3.24
5026 5378 5.885912 ACACAGTGTAAAATGGTTCACTCTT 59.114 36.000 3.69 0.00 38.79 2.85
5027 5379 7.051623 ACACAGTGTAAAATGGTTCACTCTTA 58.948 34.615 3.69 0.00 38.79 2.10
5028 5380 7.012044 ACACAGTGTAAAATGGTTCACTCTTAC 59.988 37.037 3.69 0.00 38.79 2.34
5029 5381 7.011950 CACAGTGTAAAATGGTTCACTCTTACA 59.988 37.037 0.00 0.00 38.79 2.41
5030 5382 7.719633 ACAGTGTAAAATGGTTCACTCTTACAT 59.280 33.333 0.00 0.00 38.79 2.29
5031 5383 8.230486 CAGTGTAAAATGGTTCACTCTTACATC 58.770 37.037 0.00 0.00 38.79 3.06
5032 5384 8.157476 AGTGTAAAATGGTTCACTCTTACATCT 58.843 33.333 0.00 0.00 36.59 2.90
5033 5385 8.443937 GTGTAAAATGGTTCACTCTTACATCTC 58.556 37.037 0.00 0.00 33.31 2.75
5034 5386 8.375506 TGTAAAATGGTTCACTCTTACATCTCT 58.624 33.333 0.00 0.00 0.00 3.10
5035 5387 9.871238 GTAAAATGGTTCACTCTTACATCTCTA 57.129 33.333 0.00 0.00 0.00 2.43
5037 5389 5.584253 TGGTTCACTCTTACATCTCTAGC 57.416 43.478 0.00 0.00 0.00 3.42
5038 5390 5.016831 TGGTTCACTCTTACATCTCTAGCA 58.983 41.667 0.00 0.00 0.00 3.49
5039 5391 5.126222 TGGTTCACTCTTACATCTCTAGCAG 59.874 44.000 0.00 0.00 0.00 4.24
5040 5392 5.126384 GGTTCACTCTTACATCTCTAGCAGT 59.874 44.000 0.00 0.00 0.00 4.40
5041 5393 6.350612 GGTTCACTCTTACATCTCTAGCAGTT 60.351 42.308 0.00 0.00 0.00 3.16
5042 5394 7.148052 GGTTCACTCTTACATCTCTAGCAGTTA 60.148 40.741 0.00 0.00 0.00 2.24
5043 5395 7.939784 TCACTCTTACATCTCTAGCAGTTAA 57.060 36.000 0.00 0.00 0.00 2.01
5044 5396 8.526667 TCACTCTTACATCTCTAGCAGTTAAT 57.473 34.615 0.00 0.00 0.00 1.40
5045 5397 8.409371 TCACTCTTACATCTCTAGCAGTTAATG 58.591 37.037 0.00 0.00 0.00 1.90
5046 5398 8.409371 CACTCTTACATCTCTAGCAGTTAATGA 58.591 37.037 0.00 0.00 0.00 2.57
5047 5399 9.142014 ACTCTTACATCTCTAGCAGTTAATGAT 57.858 33.333 0.00 0.00 0.00 2.45
5110 5489 2.370281 TGGTTTCTCGCTCTCACATC 57.630 50.000 0.00 0.00 0.00 3.06
5126 5505 3.650281 ACATCCTATGTGACATTGCCA 57.350 42.857 2.29 0.00 43.01 4.92
5127 5506 4.174704 ACATCCTATGTGACATTGCCAT 57.825 40.909 2.29 0.00 43.01 4.40
5146 5562 3.119388 CCATAAAGCAGTGTCCAACCATG 60.119 47.826 0.00 0.00 0.00 3.66
5149 5565 2.949177 AGCAGTGTCCAACCATGTAA 57.051 45.000 0.00 0.00 0.00 2.41
5150 5566 3.222173 AGCAGTGTCCAACCATGTAAA 57.778 42.857 0.00 0.00 0.00 2.01
5151 5567 2.884639 AGCAGTGTCCAACCATGTAAAC 59.115 45.455 0.00 0.00 0.00 2.01
5154 5570 4.792704 GCAGTGTCCAACCATGTAAACAAG 60.793 45.833 0.00 0.00 0.00 3.16
5155 5571 4.338118 CAGTGTCCAACCATGTAAACAAGT 59.662 41.667 0.00 0.00 0.00 3.16
5156 5572 4.953579 AGTGTCCAACCATGTAAACAAGTT 59.046 37.500 0.00 0.00 0.00 2.66
5157 5573 6.038825 CAGTGTCCAACCATGTAAACAAGTTA 59.961 38.462 0.00 0.00 0.00 2.24
5159 5575 6.861055 GTGTCCAACCATGTAAACAAGTTATG 59.139 38.462 0.00 0.00 0.00 1.90
5160 5576 6.547880 TGTCCAACCATGTAAACAAGTTATGT 59.452 34.615 0.00 0.00 46.82 2.29
5161 5577 6.861055 GTCCAACCATGTAAACAAGTTATGTG 59.139 38.462 0.00 0.00 42.99 3.21
5162 5578 6.773200 TCCAACCATGTAAACAAGTTATGTGA 59.227 34.615 0.00 0.00 42.99 3.58
5163 5579 7.285629 TCCAACCATGTAAACAAGTTATGTGAA 59.714 33.333 0.00 0.00 42.99 3.18
5165 5581 9.474920 CAACCATGTAAACAAGTTATGTGAAAT 57.525 29.630 0.00 0.00 42.99 2.17
5167 5583 9.691362 ACCATGTAAACAAGTTATGTGAAATTC 57.309 29.630 0.00 0.00 42.99 2.17
5168 5584 9.912634 CCATGTAAACAAGTTATGTGAAATTCT 57.087 29.630 0.00 0.00 42.99 2.40
5176 5592 9.733556 ACAAGTTATGTGAAATTCTATGGTACA 57.266 29.630 0.00 0.00 42.58 2.90
5214 5675 4.954875 TCAAATGTTCAAAACCATGTCCC 58.045 39.130 0.00 0.00 0.00 4.46
5215 5676 4.653341 TCAAATGTTCAAAACCATGTCCCT 59.347 37.500 0.00 0.00 0.00 4.20
5216 5677 5.835819 TCAAATGTTCAAAACCATGTCCCTA 59.164 36.000 0.00 0.00 0.00 3.53
5218 5679 3.492337 TGTTCAAAACCATGTCCCTACC 58.508 45.455 0.00 0.00 0.00 3.18
5219 5680 3.139397 TGTTCAAAACCATGTCCCTACCT 59.861 43.478 0.00 0.00 0.00 3.08
5220 5681 4.351407 TGTTCAAAACCATGTCCCTACCTA 59.649 41.667 0.00 0.00 0.00 3.08
5249 5716 2.584835 TCAGTCCCTCCCAAATGTTG 57.415 50.000 0.00 0.00 0.00 3.33
5252 5719 3.396276 TCAGTCCCTCCCAAATGTTGTAA 59.604 43.478 0.00 0.00 0.00 2.41
5253 5720 4.141135 TCAGTCCCTCCCAAATGTTGTAAA 60.141 41.667 0.00 0.00 0.00 2.01
5257 5897 5.949952 GTCCCTCCCAAATGTTGTAAATACT 59.050 40.000 0.00 0.00 0.00 2.12
5269 5909 7.569639 TGTTGTAAATACTACTTTGTGCCAA 57.430 32.000 6.69 0.00 33.96 4.52
5285 5925 4.941263 TGTGCCAATTATGTCACTTCTACC 59.059 41.667 0.00 0.00 0.00 3.18
5286 5926 4.034048 GTGCCAATTATGTCACTTCTACCG 59.966 45.833 0.00 0.00 0.00 4.02
5287 5927 3.560068 GCCAATTATGTCACTTCTACCGG 59.440 47.826 0.00 0.00 0.00 5.28
5317 5957 9.573133 CAAAGTTGTTAAATATGATCTTGTCCC 57.427 33.333 0.00 0.00 0.00 4.46
5323 5963 7.072454 TGTTAAATATGATCTTGTCCCTAGGCT 59.928 37.037 2.05 0.00 0.00 4.58
5327 5967 3.181329 TGATCTTGTCCCTAGGCTTTCA 58.819 45.455 2.05 0.00 0.00 2.69
5401 6041 8.459635 GTTTTGTTAAAAAGGCCAAAAACCATA 58.540 29.630 5.01 0.00 38.20 2.74
5477 6117 1.079073 CAAATTCCTGGGGGTGCCT 59.921 57.895 0.00 0.00 0.00 4.75
5478 6118 0.972471 CAAATTCCTGGGGGTGCCTC 60.972 60.000 0.00 0.00 0.00 4.70
5479 6119 2.168272 AAATTCCTGGGGGTGCCTCC 62.168 60.000 0.00 0.00 0.00 4.30
5480 6120 3.603330 ATTCCTGGGGGTGCCTCCT 62.603 63.158 8.82 0.00 36.25 3.69
5491 6131 2.356278 GCCTCCTGCATCCACCAA 59.644 61.111 0.00 0.00 40.77 3.67
5492 6132 2.048603 GCCTCCTGCATCCACCAAC 61.049 63.158 0.00 0.00 40.77 3.77
5493 6133 1.746615 CCTCCTGCATCCACCAACG 60.747 63.158 0.00 0.00 0.00 4.10
5494 6134 1.296392 CTCCTGCATCCACCAACGA 59.704 57.895 0.00 0.00 0.00 3.85
5495 6135 1.003839 TCCTGCATCCACCAACGAC 60.004 57.895 0.00 0.00 0.00 4.34
5496 6136 2.390599 CCTGCATCCACCAACGACG 61.391 63.158 0.00 0.00 0.00 5.12
5497 6137 3.027170 CTGCATCCACCAACGACGC 62.027 63.158 0.00 0.00 0.00 5.19
5498 6138 4.147322 GCATCCACCAACGACGCG 62.147 66.667 3.53 3.53 0.00 6.01
5499 6139 4.147322 CATCCACCAACGACGCGC 62.147 66.667 5.73 0.00 0.00 6.86
5503 6143 4.444024 CACCAACGACGCGCCATG 62.444 66.667 5.73 0.00 0.00 3.66
5504 6144 4.673298 ACCAACGACGCGCCATGA 62.673 61.111 5.73 0.00 0.00 3.07
5505 6145 3.853330 CCAACGACGCGCCATGAG 61.853 66.667 5.73 0.00 0.00 2.90
5506 6146 4.505217 CAACGACGCGCCATGAGC 62.505 66.667 5.73 0.00 38.52 4.26
5509 6149 3.787676 CGACGCGCCATGAGCAAA 61.788 61.111 5.73 0.00 44.04 3.68
5510 6150 2.099062 GACGCGCCATGAGCAAAG 59.901 61.111 5.73 3.51 44.04 2.77
5511 6151 4.107051 ACGCGCCATGAGCAAAGC 62.107 61.111 5.73 4.78 44.04 3.51
5512 6152 3.807538 CGCGCCATGAGCAAAGCT 61.808 61.111 0.00 0.00 44.04 3.74
5522 6162 4.030452 GCAAAGCTCGTTGCCGCT 62.030 61.111 11.37 0.00 46.69 5.52
5523 6163 2.174349 CAAAGCTCGTTGCCGCTC 59.826 61.111 0.00 0.00 44.23 5.03
5524 6164 3.050275 AAAGCTCGTTGCCGCTCC 61.050 61.111 0.00 0.00 44.23 4.70
5525 6165 3.537206 AAAGCTCGTTGCCGCTCCT 62.537 57.895 0.00 0.00 44.23 3.69
5526 6166 4.749310 AGCTCGTTGCCGCTCCTG 62.749 66.667 0.00 0.00 44.23 3.86
5536 6176 4.154347 CGCTCCTGGGCCTCTGTC 62.154 72.222 4.53 0.00 0.00 3.51
5537 6177 3.791586 GCTCCTGGGCCTCTGTCC 61.792 72.222 4.53 0.00 36.51 4.02
5538 6178 3.086600 CTCCTGGGCCTCTGTCCC 61.087 72.222 4.53 0.00 44.17 4.46
5543 6183 3.721706 GGGCCTCTGTCCCAGTGG 61.722 72.222 0.84 0.63 44.90 4.00
5544 6184 2.607750 GGCCTCTGTCCCAGTGGA 60.608 66.667 11.95 0.00 44.90 4.02
5545 6185 2.664081 GGCCTCTGTCCCAGTGGAG 61.664 68.421 11.95 0.00 44.90 3.86
5546 6186 2.985456 CCTCTGTCCCAGTGGAGC 59.015 66.667 11.95 3.16 44.90 4.70
5547 6187 1.915266 CCTCTGTCCCAGTGGAGCA 60.915 63.158 11.95 8.09 44.90 4.26
5548 6188 1.483595 CCTCTGTCCCAGTGGAGCAA 61.484 60.000 11.95 0.20 44.90 3.91
5549 6189 0.397941 CTCTGTCCCAGTGGAGCAAA 59.602 55.000 11.95 0.00 42.85 3.68
5550 6190 0.108585 TCTGTCCCAGTGGAGCAAAC 59.891 55.000 11.95 1.34 42.85 2.93
5551 6191 0.109342 CTGTCCCAGTGGAGCAAACT 59.891 55.000 11.95 0.00 42.85 2.66
5552 6192 0.550914 TGTCCCAGTGGAGCAAACTT 59.449 50.000 11.95 0.00 42.85 2.66
5553 6193 0.954452 GTCCCAGTGGAGCAAACTTG 59.046 55.000 11.95 0.00 42.85 3.16
5554 6194 0.550914 TCCCAGTGGAGCAAACTTGT 59.449 50.000 11.95 0.00 35.03 3.16
5555 6195 1.064017 TCCCAGTGGAGCAAACTTGTT 60.064 47.619 11.95 0.00 35.03 2.83
5556 6196 1.756538 CCCAGTGGAGCAAACTTGTTT 59.243 47.619 11.95 0.00 0.00 2.83
5557 6197 2.955660 CCCAGTGGAGCAAACTTGTTTA 59.044 45.455 11.95 0.00 0.00 2.01
5558 6198 3.573967 CCCAGTGGAGCAAACTTGTTTAT 59.426 43.478 11.95 0.00 0.00 1.40
5559 6199 4.764823 CCCAGTGGAGCAAACTTGTTTATA 59.235 41.667 11.95 0.00 0.00 0.98
5560 6200 5.418840 CCCAGTGGAGCAAACTTGTTTATAT 59.581 40.000 11.95 0.00 0.00 0.86
5561 6201 6.404734 CCCAGTGGAGCAAACTTGTTTATATC 60.405 42.308 11.95 0.00 0.00 1.63
5562 6202 6.404734 CCAGTGGAGCAAACTTGTTTATATCC 60.405 42.308 1.68 12.62 0.00 2.59
5563 6203 6.150976 CAGTGGAGCAAACTTGTTTATATCCA 59.849 38.462 15.82 15.82 32.10 3.41
5564 6204 6.375455 AGTGGAGCAAACTTGTTTATATCCAG 59.625 38.462 18.28 1.79 35.12 3.86
5565 6205 5.652014 TGGAGCAAACTTGTTTATATCCAGG 59.348 40.000 15.82 0.00 31.03 4.45
5566 6206 5.885912 GGAGCAAACTTGTTTATATCCAGGA 59.114 40.000 13.76 0.00 0.00 3.86
5567 6207 6.038714 GGAGCAAACTTGTTTATATCCAGGAG 59.961 42.308 13.76 0.00 0.00 3.69
5568 6208 6.485171 AGCAAACTTGTTTATATCCAGGAGT 58.515 36.000 0.00 0.00 0.00 3.85
5569 6209 6.948309 AGCAAACTTGTTTATATCCAGGAGTT 59.052 34.615 0.00 0.00 0.00 3.01
5570 6210 7.451566 AGCAAACTTGTTTATATCCAGGAGTTT 59.548 33.333 0.00 0.00 36.76 2.66
5571 6211 8.970691 CAAACTTGTTTATATCCAGGAGTTTG 57.029 34.615 14.26 14.26 43.20 2.93
5572 6212 8.576442 CAAACTTGTTTATATCCAGGAGTTTGT 58.424 33.333 17.25 0.00 43.50 2.83
5573 6213 9.802039 AAACTTGTTTATATCCAGGAGTTTGTA 57.198 29.630 0.00 0.00 35.48 2.41
5574 6214 9.449719 AACTTGTTTATATCCAGGAGTTTGTAG 57.550 33.333 0.00 0.00 0.00 2.74
5575 6215 8.822805 ACTTGTTTATATCCAGGAGTTTGTAGA 58.177 33.333 0.00 0.00 0.00 2.59
5576 6216 9.667107 CTTGTTTATATCCAGGAGTTTGTAGAA 57.333 33.333 0.00 0.00 0.00 2.10
5577 6217 9.667107 TTGTTTATATCCAGGAGTTTGTAGAAG 57.333 33.333 0.00 0.00 0.00 2.85
5578 6218 7.769044 TGTTTATATCCAGGAGTTTGTAGAAGC 59.231 37.037 0.00 0.00 0.00 3.86
5579 6219 5.957771 ATATCCAGGAGTTTGTAGAAGCA 57.042 39.130 0.00 0.00 0.00 3.91
5580 6220 4.640771 ATCCAGGAGTTTGTAGAAGCAA 57.359 40.909 0.00 0.00 0.00 3.91
5581 6221 3.740115 TCCAGGAGTTTGTAGAAGCAAC 58.260 45.455 0.00 0.00 0.00 4.17
5582 6222 2.480419 CCAGGAGTTTGTAGAAGCAACG 59.520 50.000 0.00 0.00 0.00 4.10
5583 6223 3.390135 CAGGAGTTTGTAGAAGCAACGA 58.610 45.455 0.00 0.00 0.00 3.85
5584 6224 3.184581 CAGGAGTTTGTAGAAGCAACGAC 59.815 47.826 0.00 0.00 0.00 4.34
5585 6225 3.069729 AGGAGTTTGTAGAAGCAACGACT 59.930 43.478 0.00 0.00 0.00 4.18
5586 6226 3.184581 GGAGTTTGTAGAAGCAACGACTG 59.815 47.826 0.00 0.00 0.00 3.51
5587 6227 3.131396 AGTTTGTAGAAGCAACGACTGG 58.869 45.455 0.00 0.00 0.00 4.00
5588 6228 3.128349 GTTTGTAGAAGCAACGACTGGA 58.872 45.455 0.00 0.00 0.00 3.86
5589 6229 3.462483 TTGTAGAAGCAACGACTGGAA 57.538 42.857 0.00 0.00 0.00 3.53
5590 6230 3.678056 TGTAGAAGCAACGACTGGAAT 57.322 42.857 0.00 0.00 0.00 3.01
5591 6231 3.325870 TGTAGAAGCAACGACTGGAATG 58.674 45.455 0.00 0.00 0.00 2.67
5592 6232 2.550830 AGAAGCAACGACTGGAATGT 57.449 45.000 0.00 0.00 0.00 2.71
5593 6233 2.417719 AGAAGCAACGACTGGAATGTC 58.582 47.619 0.00 0.00 0.00 3.06
5601 6241 2.279582 GACTGGAATGTCGTCGATGT 57.720 50.000 4.21 0.00 0.00 3.06
5602 6242 3.416119 GACTGGAATGTCGTCGATGTA 57.584 47.619 4.21 0.00 0.00 2.29
5603 6243 3.966154 GACTGGAATGTCGTCGATGTAT 58.034 45.455 4.21 0.00 0.00 2.29
5604 6244 5.104562 GACTGGAATGTCGTCGATGTATA 57.895 43.478 4.21 0.00 0.00 1.47
5605 6245 4.856664 ACTGGAATGTCGTCGATGTATAC 58.143 43.478 4.21 0.00 0.00 1.47
5606 6246 4.227538 CTGGAATGTCGTCGATGTATACC 58.772 47.826 4.21 4.47 0.00 2.73
5607 6247 3.633065 TGGAATGTCGTCGATGTATACCA 59.367 43.478 4.21 6.83 0.00 3.25
5608 6248 4.227538 GGAATGTCGTCGATGTATACCAG 58.772 47.826 4.21 0.00 0.00 4.00
5609 6249 4.023450 GGAATGTCGTCGATGTATACCAGA 60.023 45.833 4.21 0.00 0.00 3.86
5610 6250 5.506815 GGAATGTCGTCGATGTATACCAGAA 60.507 44.000 4.21 0.00 0.00 3.02
5611 6251 4.547406 TGTCGTCGATGTATACCAGAAG 57.453 45.455 4.21 0.36 0.00 2.85
5612 6252 4.193865 TGTCGTCGATGTATACCAGAAGA 58.806 43.478 4.21 2.66 0.00 2.87
5613 6253 4.034858 TGTCGTCGATGTATACCAGAAGAC 59.965 45.833 20.36 20.36 39.53 3.01
5614 6254 3.246936 TCGTCGATGTATACCAGAAGACG 59.753 47.826 20.30 20.30 43.37 4.18
5615 6255 3.002042 CGTCGATGTATACCAGAAGACGT 59.998 47.826 19.10 0.00 40.29 4.34
5616 6256 4.525686 GTCGATGTATACCAGAAGACGTC 58.474 47.826 7.70 7.70 0.00 4.34
5617 6257 4.034858 GTCGATGTATACCAGAAGACGTCA 59.965 45.833 19.50 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
238 250 5.649831 GTGAGCTCAAGTTATCATTTCCCTT 59.350 40.000 20.19 0.00 0.00 3.95
262 274 3.343617 TGTCTTTATCCAAAAGCCCTCG 58.656 45.455 0.00 0.00 0.00 4.63
305 322 3.332493 CTGGGACTGCATGCAACGC 62.332 63.158 22.88 23.76 0.00 4.84
435 461 6.747125 TCTTCAAAAATGCATGCAAGTCTTA 58.253 32.000 26.68 6.74 0.00 2.10
597 625 3.819368 TCATGCCACAAAGTCTCTCAAA 58.181 40.909 0.00 0.00 0.00 2.69
744 876 3.593834 GTTTGTACTCCGAACGGGT 57.406 52.632 13.29 11.86 37.00 5.28
890 1022 2.270986 GGATCGGGATTGCATGGCC 61.271 63.158 0.00 0.00 0.00 5.36
895 1027 2.106131 CGTCGGATCGGGATTGCA 59.894 61.111 0.00 0.00 0.00 4.08
919 1051 2.815211 TGCTTGCGATCCTGCGAC 60.815 61.111 0.00 0.00 37.81 5.19
1257 1393 1.810755 GAAGGTCAACGGGATTCAACC 59.189 52.381 0.00 0.00 0.00 3.77
1314 1450 1.803334 TACAAGCGTCGGCAGAAATT 58.197 45.000 0.00 0.00 43.41 1.82
1324 1460 9.260166 GTAGATTTACGACTATATACAAGCGTC 57.740 37.037 0.00 0.00 32.09 5.19
1414 1550 3.009723 ACGGAAATAGCATGTCAACCAG 58.990 45.455 0.00 0.00 0.00 4.00
1540 1676 8.267183 TCCAAATGCAGATTCTAGAAAGTATGA 58.733 33.333 9.71 0.26 0.00 2.15
1568 1704 2.536803 TCTTTGACAACGCGAACTACAC 59.463 45.455 15.93 0.00 0.00 2.90
1724 1869 2.665185 GACGCGGTTCCTGCTTGT 60.665 61.111 12.47 0.00 0.00 3.16
1739 1884 2.608268 GGACTTAAACGAGGAGCAGAC 58.392 52.381 0.00 0.00 0.00 3.51
1740 1885 1.549170 GGGACTTAAACGAGGAGCAGA 59.451 52.381 0.00 0.00 0.00 4.26
1778 1923 1.838396 TCTGCTCACAGGAGGCACA 60.838 57.895 0.00 0.00 44.59 4.57
1792 1937 4.208047 CACTCATCGCTTGTAATAGTCTGC 59.792 45.833 0.00 0.00 0.00 4.26
1803 1948 0.792640 AAACGAGCACTCATCGCTTG 59.207 50.000 0.00 0.00 43.91 4.01
1919 2064 2.749621 GCCAATCCTACTTGTGTCTTGG 59.250 50.000 0.00 0.00 35.79 3.61
2019 2164 8.380743 AGTATATAGTCAAGAGTAAGGTCGTG 57.619 38.462 0.00 0.00 0.00 4.35
2042 2187 4.443034 GGAATACAGGAGGTGCGAATAAGT 60.443 45.833 0.00 0.00 0.00 2.24
2253 2398 9.520204 AAAATATCATTGAGAACAAAATAGCCG 57.480 29.630 0.00 0.00 39.54 5.52
2473 2618 1.909302 AGTGGGATTCTGAACGTCCAT 59.091 47.619 11.15 0.00 33.62 3.41
2478 2623 4.094887 CCATTAACAGTGGGATTCTGAACG 59.905 45.833 0.00 0.00 36.81 3.95
2538 2683 6.012745 AGATGGCTCAACCTTATTTTCAACT 58.987 36.000 0.00 0.00 40.22 3.16
2560 2705 2.104792 CCTCTTTGGTCACCTTCACAGA 59.895 50.000 0.00 0.00 0.00 3.41
2673 2818 2.338785 GGGAGAAGCAGCAACAGGC 61.339 63.158 0.00 0.00 45.30 4.85
2954 3127 2.031870 GAACCTTCAACAGCCTTGGTT 58.968 47.619 0.00 0.00 40.05 3.67
3051 3224 4.785301 AGTCATAACCAACCATCATGAGG 58.215 43.478 0.09 0.00 0.00 3.86
3081 3254 7.862372 CGCCAAAAATGTCTGCATATTTATACT 59.138 33.333 0.00 0.00 34.39 2.12
3096 3269 3.255642 ACAGCTATGAACGCCAAAAATGT 59.744 39.130 0.00 0.00 0.00 2.71
3101 3274 2.177394 TCACAGCTATGAACGCCAAA 57.823 45.000 0.00 0.00 0.00 3.28
3326 3501 5.674052 AGCAGTACTGATCAATCTGAAGT 57.326 39.130 27.08 6.28 0.00 3.01
3498 3673 0.883833 CAATGCCCACTTCAGTGTCC 59.116 55.000 6.22 0.00 44.21 4.02
3620 3795 6.384224 CAACACACATTTTCTACATGCTCAT 58.616 36.000 0.00 0.00 0.00 2.90
3678 3853 8.251026 TCTAGATACATCTGTTTGAACGACAAT 58.749 33.333 1.88 0.00 36.71 2.71
3695 3870 6.095021 ACAGCACTGAAATACGTCTAGATACA 59.905 38.462 4.31 0.00 0.00 2.29
3696 3871 6.496571 ACAGCACTGAAATACGTCTAGATAC 58.503 40.000 4.31 0.00 0.00 2.24
3932 4256 1.199789 TGCCGCATTCAGCTAACAAAG 59.800 47.619 0.00 0.00 42.61 2.77
3949 4275 4.548451 TCCATATCTCATCACAGATGCC 57.452 45.455 2.19 0.00 34.75 4.40
3955 4281 9.330063 GTTCAAGTTAATCCATATCTCATCACA 57.670 33.333 0.00 0.00 0.00 3.58
4021 4347 0.768622 ATTGGAAACGACCACCTCCA 59.231 50.000 0.00 0.00 39.85 3.86
4089 4415 2.352715 CGGTAGCTCACACTGTTCATGA 60.353 50.000 0.00 0.00 0.00 3.07
4141 4467 0.687354 TCCTGCTGAAGTCTTCACCC 59.313 55.000 11.36 6.40 35.46 4.61
4265 4591 4.740822 GCCATTCCCCTGGTGCGT 62.741 66.667 0.00 0.00 38.63 5.24
4555 4893 2.273179 CCACCAGAGTTCCGGTCGA 61.273 63.158 0.00 0.00 31.41 4.20
4559 4897 1.293498 CAGACCACCAGAGTTCCGG 59.707 63.158 0.00 0.00 0.00 5.14
4606 4944 9.978044 TCAAATGACAACACAAATATTGATGAA 57.022 25.926 6.28 0.00 0.00 2.57
4610 4948 9.761504 AACATCAAATGACAACACAAATATTGA 57.238 25.926 0.00 0.00 0.00 2.57
4613 4951 7.541783 CGGAACATCAAATGACAACACAAATAT 59.458 33.333 0.00 0.00 0.00 1.28
4615 4953 5.691305 CGGAACATCAAATGACAACACAAAT 59.309 36.000 0.00 0.00 0.00 2.32
4616 4954 5.039984 CGGAACATCAAATGACAACACAAA 58.960 37.500 0.00 0.00 0.00 2.83
4617 4955 4.097135 ACGGAACATCAAATGACAACACAA 59.903 37.500 0.00 0.00 0.00 3.33
4618 4956 3.629855 ACGGAACATCAAATGACAACACA 59.370 39.130 0.00 0.00 0.00 3.72
4619 4957 4.223320 ACGGAACATCAAATGACAACAC 57.777 40.909 0.00 0.00 0.00 3.32
4620 4958 4.909696 AACGGAACATCAAATGACAACA 57.090 36.364 0.00 0.00 0.00 3.33
4621 4959 5.977129 AGAAAACGGAACATCAAATGACAAC 59.023 36.000 0.00 0.00 0.00 3.32
4624 4962 6.002062 AGAGAAAACGGAACATCAAATGAC 57.998 37.500 0.00 0.00 0.00 3.06
4626 4964 6.917477 TCAAAGAGAAAACGGAACATCAAATG 59.083 34.615 0.00 0.00 0.00 2.32
4627 4965 6.918022 GTCAAAGAGAAAACGGAACATCAAAT 59.082 34.615 0.00 0.00 0.00 2.32
4628 4966 6.127869 TGTCAAAGAGAAAACGGAACATCAAA 60.128 34.615 0.00 0.00 0.00 2.69
4630 4968 4.878971 TGTCAAAGAGAAAACGGAACATCA 59.121 37.500 0.00 0.00 0.00 3.07
4631 4969 5.007724 AGTGTCAAAGAGAAAACGGAACATC 59.992 40.000 0.00 0.00 0.00 3.06
4632 4970 4.881850 AGTGTCAAAGAGAAAACGGAACAT 59.118 37.500 0.00 0.00 0.00 2.71
4633 4971 4.258543 AGTGTCAAAGAGAAAACGGAACA 58.741 39.130 0.00 0.00 0.00 3.18
4634 4972 4.877323 AGTGTCAAAGAGAAAACGGAAC 57.123 40.909 0.00 0.00 0.00 3.62
4636 4974 3.625764 CCAAGTGTCAAAGAGAAAACGGA 59.374 43.478 0.00 0.00 0.00 4.69
4637 4975 3.792124 GCCAAGTGTCAAAGAGAAAACGG 60.792 47.826 0.00 0.00 0.00 4.44
4638 4976 3.065371 AGCCAAGTGTCAAAGAGAAAACG 59.935 43.478 0.00 0.00 0.00 3.60
4639 4977 4.142381 ACAGCCAAGTGTCAAAGAGAAAAC 60.142 41.667 0.00 0.00 0.00 2.43
4645 4983 3.211045 GGTAACAGCCAAGTGTCAAAGA 58.789 45.455 0.00 0.00 0.00 2.52
4646 4984 2.032030 CGGTAACAGCCAAGTGTCAAAG 60.032 50.000 0.00 0.00 0.00 2.77
4650 4988 1.589803 AACGGTAACAGCCAAGTGTC 58.410 50.000 0.00 0.00 0.00 3.67
4657 4995 2.817901 ACGATGATAACGGTAACAGCC 58.182 47.619 0.08 0.00 34.93 4.85
4664 5002 4.509616 TCAATCCAAACGATGATAACGGT 58.490 39.130 0.00 0.00 34.93 4.83
4670 5008 9.396022 AGTACTATTTTCAATCCAAACGATGAT 57.604 29.630 0.00 0.00 0.00 2.45
4671 5009 8.786826 AGTACTATTTTCAATCCAAACGATGA 57.213 30.769 0.00 0.00 0.00 2.92
4689 5027 6.776603 GTGTATCCACAACCTCCTAGTACTAT 59.223 42.308 2.33 0.00 41.44 2.12
4690 5028 6.125029 GTGTATCCACAACCTCCTAGTACTA 58.875 44.000 1.89 1.89 41.44 1.82
4691 5029 4.954826 GTGTATCCACAACCTCCTAGTACT 59.045 45.833 0.00 0.00 41.44 2.73
4692 5030 5.259832 GTGTATCCACAACCTCCTAGTAC 57.740 47.826 0.00 0.00 41.44 2.73
4706 5044 4.014406 ACTACGTGAGATGTGTGTATCCA 58.986 43.478 0.00 0.00 0.00 3.41
4707 5045 4.634184 ACTACGTGAGATGTGTGTATCC 57.366 45.455 0.00 0.00 0.00 2.59
4709 5047 5.638596 TGAACTACGTGAGATGTGTGTAT 57.361 39.130 0.00 0.00 0.00 2.29
4710 5048 5.009310 AGTTGAACTACGTGAGATGTGTGTA 59.991 40.000 0.00 0.00 0.00 2.90
4711 5049 4.049186 GTTGAACTACGTGAGATGTGTGT 58.951 43.478 0.00 0.00 0.00 3.72
4712 5050 4.299155 AGTTGAACTACGTGAGATGTGTG 58.701 43.478 0.00 0.00 0.00 3.82
4713 5051 4.585955 AGTTGAACTACGTGAGATGTGT 57.414 40.909 0.00 0.00 0.00 3.72
4714 5052 6.093404 ACATAGTTGAACTACGTGAGATGTG 58.907 40.000 7.28 1.57 32.84 3.21
4715 5053 6.268825 ACATAGTTGAACTACGTGAGATGT 57.731 37.500 7.28 4.62 32.84 3.06
4716 5054 6.035005 CCAACATAGTTGAACTACGTGAGATG 59.965 42.308 7.28 3.98 32.84 2.90
4717 5055 6.071560 TCCAACATAGTTGAACTACGTGAGAT 60.072 38.462 7.28 0.00 32.84 2.75
4718 5056 5.242171 TCCAACATAGTTGAACTACGTGAGA 59.758 40.000 7.28 3.70 32.84 3.27
4719 5057 5.466819 TCCAACATAGTTGAACTACGTGAG 58.533 41.667 7.28 2.62 32.84 3.51
4720 5058 5.456548 TCCAACATAGTTGAACTACGTGA 57.543 39.130 7.28 0.00 32.84 4.35
4721 5059 5.637810 ACATCCAACATAGTTGAACTACGTG 59.362 40.000 7.28 5.84 32.84 4.49
4722 5060 5.637810 CACATCCAACATAGTTGAACTACGT 59.362 40.000 7.28 2.24 32.84 3.57
4723 5061 5.867174 TCACATCCAACATAGTTGAACTACG 59.133 40.000 7.28 1.49 32.84 3.51
4724 5062 7.667043 TTCACATCCAACATAGTTGAACTAC 57.333 36.000 7.28 0.00 32.84 2.73
4725 5063 8.729756 CAATTCACATCCAACATAGTTGAACTA 58.270 33.333 7.60 7.60 34.82 2.24
4726 5064 7.596494 CAATTCACATCCAACATAGTTGAACT 58.404 34.615 11.19 2.37 0.00 3.01
4727 5065 6.308766 GCAATTCACATCCAACATAGTTGAAC 59.691 38.462 11.19 0.00 0.00 3.18
4728 5066 6.209192 AGCAATTCACATCCAACATAGTTGAA 59.791 34.615 11.19 0.00 0.00 2.69
4729 5067 5.711506 AGCAATTCACATCCAACATAGTTGA 59.288 36.000 11.19 0.00 0.00 3.18
4730 5068 5.803461 CAGCAATTCACATCCAACATAGTTG 59.197 40.000 3.00 3.00 0.00 3.16
4731 5069 5.622914 GCAGCAATTCACATCCAACATAGTT 60.623 40.000 0.00 0.00 0.00 2.24
4732 5070 4.142315 GCAGCAATTCACATCCAACATAGT 60.142 41.667 0.00 0.00 0.00 2.12
4733 5071 4.357142 GCAGCAATTCACATCCAACATAG 58.643 43.478 0.00 0.00 0.00 2.23
4734 5072 3.181498 CGCAGCAATTCACATCCAACATA 60.181 43.478 0.00 0.00 0.00 2.29
4735 5073 2.416296 CGCAGCAATTCACATCCAACAT 60.416 45.455 0.00 0.00 0.00 2.71
4736 5074 1.068402 CGCAGCAATTCACATCCAACA 60.068 47.619 0.00 0.00 0.00 3.33
4737 5075 1.621107 CGCAGCAATTCACATCCAAC 58.379 50.000 0.00 0.00 0.00 3.77
4756 5094 7.141100 TCTAAGGTAAAAACACTGCATTAGC 57.859 36.000 0.00 0.00 42.57 3.09
4763 5101 8.782533 GTGTTGAATCTAAGGTAAAAACACTG 57.217 34.615 7.82 0.00 41.66 3.66
4764 5102 8.747538 AGTGTTGAATCTAAGGTAAAAACACT 57.252 30.769 11.04 11.04 46.97 3.55
4778 5116 7.621991 CGCGAAAAGATATAAGTGTTGAATCT 58.378 34.615 0.00 0.00 0.00 2.40
4785 5123 4.868171 TGAAGCGCGAAAAGATATAAGTGT 59.132 37.500 12.10 0.00 0.00 3.55
4787 5125 5.109903 ACTGAAGCGCGAAAAGATATAAGT 58.890 37.500 12.10 0.00 0.00 2.24
4788 5126 5.643339 ACTGAAGCGCGAAAAGATATAAG 57.357 39.130 12.10 0.00 0.00 1.73
4791 5129 3.684788 ACAACTGAAGCGCGAAAAGATAT 59.315 39.130 12.10 0.00 0.00 1.63
4792 5130 3.064207 ACAACTGAAGCGCGAAAAGATA 58.936 40.909 12.10 0.00 0.00 1.98
4793 5131 1.873591 ACAACTGAAGCGCGAAAAGAT 59.126 42.857 12.10 0.00 0.00 2.40
4794 5132 1.003972 CACAACTGAAGCGCGAAAAGA 60.004 47.619 12.10 0.00 0.00 2.52
4797 5135 1.010125 GCACAACTGAAGCGCGAAA 60.010 52.632 12.10 0.00 0.00 3.46
4798 5136 2.176926 TGCACAACTGAAGCGCGAA 61.177 52.632 12.10 0.00 0.00 4.70
4799 5137 2.587473 TGCACAACTGAAGCGCGA 60.587 55.556 12.10 0.00 0.00 5.87
4800 5138 2.425773 GTGCACAACTGAAGCGCG 60.426 61.111 13.17 0.00 0.00 6.86
4802 5140 1.002576 TGAATGTGCACAACTGAAGCG 60.003 47.619 25.72 0.00 0.00 4.68
4804 5142 3.562973 AGACTGAATGTGCACAACTGAAG 59.437 43.478 25.72 18.14 0.00 3.02
4805 5143 3.544684 AGACTGAATGTGCACAACTGAA 58.455 40.909 25.72 7.23 0.00 3.02
4806 5144 3.133691 GAGACTGAATGTGCACAACTGA 58.866 45.455 25.72 7.47 0.00 3.41
4808 5146 3.198409 TGAGACTGAATGTGCACAACT 57.802 42.857 25.72 14.37 0.00 3.16
4809 5147 3.851105 GCTTGAGACTGAATGTGCACAAC 60.851 47.826 25.72 20.38 0.00 3.32
4811 5149 1.875514 GCTTGAGACTGAATGTGCACA 59.124 47.619 24.08 24.08 0.00 4.57
4812 5150 1.875514 TGCTTGAGACTGAATGTGCAC 59.124 47.619 10.75 10.75 0.00 4.57
4813 5151 2.148768 CTGCTTGAGACTGAATGTGCA 58.851 47.619 0.00 0.00 0.00 4.57
4814 5152 2.149578 ACTGCTTGAGACTGAATGTGC 58.850 47.619 0.00 0.00 0.00 4.57
4815 5153 3.811497 TCAACTGCTTGAGACTGAATGTG 59.189 43.478 0.00 0.00 32.33 3.21
4816 5154 4.077300 TCAACTGCTTGAGACTGAATGT 57.923 40.909 0.00 0.00 32.33 2.71
4826 5164 2.210116 GAAACGGACTCAACTGCTTGA 58.790 47.619 0.00 0.00 35.04 3.02
4827 5165 1.939934 TGAAACGGACTCAACTGCTTG 59.060 47.619 0.00 0.00 0.00 4.01
4828 5166 2.213499 CTGAAACGGACTCAACTGCTT 58.787 47.619 0.00 0.00 0.00 3.91
4830 5168 0.868406 CCTGAAACGGACTCAACTGC 59.132 55.000 0.00 0.00 0.00 4.40
4831 5169 2.526304 TCCTGAAACGGACTCAACTG 57.474 50.000 0.00 0.00 0.00 3.16
4832 5170 2.289694 CCATCCTGAAACGGACTCAACT 60.290 50.000 0.00 0.00 35.52 3.16
4833 5171 2.076863 CCATCCTGAAACGGACTCAAC 58.923 52.381 0.00 0.00 35.52 3.18
4834 5172 1.003118 CCCATCCTGAAACGGACTCAA 59.997 52.381 0.00 0.00 35.52 3.02
4835 5173 0.613260 CCCATCCTGAAACGGACTCA 59.387 55.000 0.00 0.00 35.52 3.41
4836 5174 0.744771 GCCCATCCTGAAACGGACTC 60.745 60.000 0.00 0.00 35.52 3.36
4837 5175 1.299976 GCCCATCCTGAAACGGACT 59.700 57.895 0.00 0.00 35.52 3.85
4838 5176 1.002624 TGCCCATCCTGAAACGGAC 60.003 57.895 0.00 0.00 35.52 4.79
4839 5177 1.299648 CTGCCCATCCTGAAACGGA 59.700 57.895 0.00 0.00 37.50 4.69
4840 5178 1.750399 CCTGCCCATCCTGAAACGG 60.750 63.158 0.00 0.00 0.00 4.44
4841 5179 2.409870 GCCTGCCCATCCTGAAACG 61.410 63.158 0.00 0.00 0.00 3.60
4842 5180 2.054453 GGCCTGCCCATCCTGAAAC 61.054 63.158 0.00 0.00 0.00 2.78
4844 5182 1.803453 AAAGGCCTGCCCATCCTGAA 61.803 55.000 5.69 0.00 36.58 3.02
4845 5183 2.240918 AAAGGCCTGCCCATCCTGA 61.241 57.895 5.69 0.00 36.58 3.86
4848 5186 2.761213 CCAAAGGCCTGCCCATCC 60.761 66.667 5.69 0.00 36.58 3.51
4849 5187 2.037847 ACCAAAGGCCTGCCCATC 59.962 61.111 5.69 0.00 36.58 3.51
4850 5188 2.037847 GACCAAAGGCCTGCCCAT 59.962 61.111 5.69 0.00 36.58 4.00
4851 5189 3.506743 TGACCAAAGGCCTGCCCA 61.507 61.111 5.69 0.00 36.58 5.36
4852 5190 2.991540 GTGACCAAAGGCCTGCCC 60.992 66.667 5.69 0.00 36.58 5.36
4853 5191 2.116125 AGTGACCAAAGGCCTGCC 59.884 61.111 5.69 0.00 0.00 4.85
4854 5192 2.924105 GCAGTGACCAAAGGCCTGC 61.924 63.158 5.69 0.00 41.37 4.85
4855 5193 1.521450 CTGCAGTGACCAAAGGCCTG 61.521 60.000 5.69 0.00 0.00 4.85
4856 5194 1.228367 CTGCAGTGACCAAAGGCCT 60.228 57.895 5.25 0.00 0.00 5.19
4857 5195 2.924105 GCTGCAGTGACCAAAGGCC 61.924 63.158 16.64 0.00 0.00 5.19
4858 5196 2.647297 GCTGCAGTGACCAAAGGC 59.353 61.111 16.64 0.00 0.00 4.35
4859 5197 2.949106 CGCTGCAGTGACCAAAGG 59.051 61.111 22.94 0.00 0.00 3.11
4860 5198 0.950555 TAGCGCTGCAGTGACCAAAG 60.951 55.000 30.83 5.93 0.00 2.77
4861 5199 0.950555 CTAGCGCTGCAGTGACCAAA 60.951 55.000 30.83 9.05 0.00 3.28
4862 5200 1.374631 CTAGCGCTGCAGTGACCAA 60.375 57.895 30.83 10.78 0.00 3.67
4863 5201 2.262603 CTAGCGCTGCAGTGACCA 59.737 61.111 30.83 12.90 0.00 4.02
4864 5202 3.191539 GCTAGCGCTGCAGTGACC 61.192 66.667 30.83 13.87 0.00 4.02
4865 5203 2.433145 TGCTAGCGCTGCAGTGAC 60.433 61.111 30.83 20.41 35.31 3.67
4866 5204 2.433145 GTGCTAGCGCTGCAGTGA 60.433 61.111 30.83 10.01 41.41 3.41
4867 5205 2.433838 AGTGCTAGCGCTGCAGTG 60.434 61.111 29.29 23.02 41.85 3.66
4868 5206 2.433838 CAGTGCTAGCGCTGCAGT 60.434 61.111 37.41 26.68 45.65 4.40
4886 5224 1.821753 ACTGCACCTGAGCTACACTAG 59.178 52.381 0.00 0.00 34.99 2.57
4887 5225 1.924731 ACTGCACCTGAGCTACACTA 58.075 50.000 0.00 0.00 34.99 2.74
4888 5226 1.001406 GAACTGCACCTGAGCTACACT 59.999 52.381 0.00 0.00 34.99 3.55
4889 5227 1.270305 TGAACTGCACCTGAGCTACAC 60.270 52.381 0.00 0.00 34.99 2.90
4890 5228 1.001293 CTGAACTGCACCTGAGCTACA 59.999 52.381 0.00 0.00 34.99 2.74
4891 5229 1.273606 TCTGAACTGCACCTGAGCTAC 59.726 52.381 0.00 0.00 34.99 3.58
4892 5230 1.632589 TCTGAACTGCACCTGAGCTA 58.367 50.000 0.00 0.00 34.99 3.32
4893 5231 0.761187 TTCTGAACTGCACCTGAGCT 59.239 50.000 0.00 0.00 34.99 4.09
4894 5232 1.534595 CTTTCTGAACTGCACCTGAGC 59.465 52.381 0.00 0.00 0.00 4.26
4895 5233 1.534595 GCTTTCTGAACTGCACCTGAG 59.465 52.381 8.96 0.00 0.00 3.35
4896 5234 1.134128 TGCTTTCTGAACTGCACCTGA 60.134 47.619 11.61 0.00 0.00 3.86
4897 5235 1.266175 CTGCTTTCTGAACTGCACCTG 59.734 52.381 11.61 2.14 0.00 4.00
4898 5236 1.602311 CTGCTTTCTGAACTGCACCT 58.398 50.000 11.61 0.00 0.00 4.00
4899 5237 0.595095 CCTGCTTTCTGAACTGCACC 59.405 55.000 11.61 0.00 0.00 5.01
4900 5238 1.597742 TCCTGCTTTCTGAACTGCAC 58.402 50.000 11.61 0.00 0.00 4.57
4901 5239 2.346766 TTCCTGCTTTCTGAACTGCA 57.653 45.000 13.98 13.98 0.00 4.41
4902 5240 3.715628 TTTTCCTGCTTTCTGAACTGC 57.284 42.857 7.39 7.39 0.00 4.40
4903 5241 8.706035 CAATTTATTTTCCTGCTTTCTGAACTG 58.294 33.333 0.00 0.00 0.00 3.16
4926 5264 2.159382 CCTAAACCGGTTGTGCTCAAT 58.841 47.619 23.08 4.68 35.92 2.57
4928 5266 0.887387 GCCTAAACCGGTTGTGCTCA 60.887 55.000 23.08 1.30 0.00 4.26
4929 5267 0.887387 TGCCTAAACCGGTTGTGCTC 60.887 55.000 23.08 10.02 0.00 4.26
4932 5270 1.953772 GGTGCCTAAACCGGTTGTG 59.046 57.895 23.08 16.19 0.00 3.33
4939 5277 1.886886 TCTGTTTCGGTGCCTAAACC 58.113 50.000 13.47 0.00 35.23 3.27
4940 5278 3.135994 TCTTCTGTTTCGGTGCCTAAAC 58.864 45.455 10.33 10.33 36.38 2.01
4941 5279 3.478857 TCTTCTGTTTCGGTGCCTAAA 57.521 42.857 0.00 0.00 0.00 1.85
4942 5280 3.399330 CTTCTTCTGTTTCGGTGCCTAA 58.601 45.455 0.00 0.00 0.00 2.69
4943 5281 2.289444 CCTTCTTCTGTTTCGGTGCCTA 60.289 50.000 0.00 0.00 0.00 3.93
4945 5283 0.875059 CCTTCTTCTGTTTCGGTGCC 59.125 55.000 0.00 0.00 0.00 5.01
4952 5304 3.565902 GCTAGTGTTGCCTTCTTCTGTTT 59.434 43.478 0.00 0.00 0.00 2.83
4967 5319 3.577805 AAACACCCAAGAAGCTAGTGT 57.422 42.857 0.00 0.00 43.21 3.55
4970 5322 4.821805 TGAGAAAAACACCCAAGAAGCTAG 59.178 41.667 0.00 0.00 0.00 3.42
4971 5323 4.787551 TGAGAAAAACACCCAAGAAGCTA 58.212 39.130 0.00 0.00 0.00 3.32
4973 5325 4.385358 TTGAGAAAAACACCCAAGAAGC 57.615 40.909 0.00 0.00 0.00 3.86
4974 5326 5.965922 ACTTTGAGAAAAACACCCAAGAAG 58.034 37.500 0.00 0.00 0.00 2.85
4975 5327 5.478679 TGACTTTGAGAAAAACACCCAAGAA 59.521 36.000 0.00 0.00 0.00 2.52
4976 5328 5.013547 TGACTTTGAGAAAAACACCCAAGA 58.986 37.500 0.00 0.00 0.00 3.02
4977 5329 5.323371 TGACTTTGAGAAAAACACCCAAG 57.677 39.130 0.00 0.00 0.00 3.61
4979 5331 5.730296 TTTGACTTTGAGAAAAACACCCA 57.270 34.783 0.00 0.00 0.00 4.51
4980 5332 5.929415 TGTTTTGACTTTGAGAAAAACACCC 59.071 36.000 15.53 0.00 43.72 4.61
4984 5336 7.169140 ACACTGTGTTTTGACTTTGAGAAAAAC 59.831 33.333 7.80 12.46 40.98 2.43
4985 5337 7.206687 ACACTGTGTTTTGACTTTGAGAAAAA 58.793 30.769 7.80 0.00 0.00 1.94
4986 5338 6.744112 ACACTGTGTTTTGACTTTGAGAAAA 58.256 32.000 7.80 0.00 0.00 2.29
4987 5339 6.325919 ACACTGTGTTTTGACTTTGAGAAA 57.674 33.333 7.80 0.00 0.00 2.52
4988 5340 5.957842 ACACTGTGTTTTGACTTTGAGAA 57.042 34.783 7.80 0.00 0.00 2.87
4989 5341 7.441890 TTTACACTGTGTTTTGACTTTGAGA 57.558 32.000 19.73 0.00 0.00 3.27
4990 5342 8.586273 CATTTTACACTGTGTTTTGACTTTGAG 58.414 33.333 19.73 0.00 0.00 3.02
4991 5343 7.543868 CCATTTTACACTGTGTTTTGACTTTGA 59.456 33.333 19.73 0.00 0.00 2.69
4992 5344 7.330700 ACCATTTTACACTGTGTTTTGACTTTG 59.669 33.333 19.73 6.59 0.00 2.77
4993 5345 7.382898 ACCATTTTACACTGTGTTTTGACTTT 58.617 30.769 19.73 0.00 0.00 2.66
4994 5346 6.930731 ACCATTTTACACTGTGTTTTGACTT 58.069 32.000 19.73 0.00 0.00 3.01
4995 5347 6.524101 ACCATTTTACACTGTGTTTTGACT 57.476 33.333 19.73 0.00 0.00 3.41
4996 5348 6.809196 TGAACCATTTTACACTGTGTTTTGAC 59.191 34.615 19.73 3.56 0.00 3.18
4998 5350 6.811170 AGTGAACCATTTTACACTGTGTTTTG 59.189 34.615 19.73 11.04 41.16 2.44
5000 5352 6.377146 AGAGTGAACCATTTTACACTGTGTTT 59.623 34.615 19.73 5.09 42.45 2.83
5001 5353 5.885912 AGAGTGAACCATTTTACACTGTGTT 59.114 36.000 19.73 3.51 42.45 3.32
5002 5354 5.437060 AGAGTGAACCATTTTACACTGTGT 58.563 37.500 18.51 18.51 42.45 3.72
5004 5356 7.051623 TGTAAGAGTGAACCATTTTACACTGT 58.948 34.615 0.00 0.00 42.45 3.55
5005 5357 7.490962 TGTAAGAGTGAACCATTTTACACTG 57.509 36.000 0.00 0.00 42.45 3.66
5006 5358 8.157476 AGATGTAAGAGTGAACCATTTTACACT 58.843 33.333 0.00 0.00 44.56 3.55
5007 5359 8.324163 AGATGTAAGAGTGAACCATTTTACAC 57.676 34.615 0.00 0.00 34.86 2.90
5011 5363 7.550906 GCTAGAGATGTAAGAGTGAACCATTTT 59.449 37.037 0.00 0.00 0.00 1.82
5012 5364 7.044798 GCTAGAGATGTAAGAGTGAACCATTT 58.955 38.462 0.00 0.00 0.00 2.32
5013 5365 6.155221 TGCTAGAGATGTAAGAGTGAACCATT 59.845 38.462 0.00 0.00 0.00 3.16
5014 5366 5.658634 TGCTAGAGATGTAAGAGTGAACCAT 59.341 40.000 0.00 0.00 0.00 3.55
5015 5367 5.016831 TGCTAGAGATGTAAGAGTGAACCA 58.983 41.667 0.00 0.00 0.00 3.67
5016 5368 5.126384 ACTGCTAGAGATGTAAGAGTGAACC 59.874 44.000 0.00 0.00 0.00 3.62
5017 5369 6.202516 ACTGCTAGAGATGTAAGAGTGAAC 57.797 41.667 0.00 0.00 0.00 3.18
5018 5370 6.842437 AACTGCTAGAGATGTAAGAGTGAA 57.158 37.500 0.00 0.00 0.00 3.18
5020 5372 8.409371 TCATTAACTGCTAGAGATGTAAGAGTG 58.591 37.037 0.00 0.00 0.00 3.51
5022 5374 9.409312 CATCATTAACTGCTAGAGATGTAAGAG 57.591 37.037 0.00 0.00 0.00 2.85
5023 5375 9.136323 TCATCATTAACTGCTAGAGATGTAAGA 57.864 33.333 0.00 0.00 34.55 2.10
5024 5376 9.190858 GTCATCATTAACTGCTAGAGATGTAAG 57.809 37.037 0.00 0.00 34.55 2.34
5025 5377 8.918116 AGTCATCATTAACTGCTAGAGATGTAA 58.082 33.333 0.00 0.00 34.55 2.41
5026 5378 8.470657 AGTCATCATTAACTGCTAGAGATGTA 57.529 34.615 0.00 0.00 34.55 2.29
5027 5379 7.358770 AGTCATCATTAACTGCTAGAGATGT 57.641 36.000 0.00 0.00 34.55 3.06
5028 5380 9.926158 ATTAGTCATCATTAACTGCTAGAGATG 57.074 33.333 0.00 0.00 34.30 2.90
5110 5489 4.338964 TGCTTTATGGCAATGTCACATAGG 59.661 41.667 0.00 0.00 39.43 2.57
5125 5504 3.507233 ACATGGTTGGACACTGCTTTATG 59.493 43.478 0.00 0.00 0.00 1.90
5126 5505 3.766545 ACATGGTTGGACACTGCTTTAT 58.233 40.909 0.00 0.00 0.00 1.40
5127 5506 3.222173 ACATGGTTGGACACTGCTTTA 57.778 42.857 0.00 0.00 0.00 1.85
5136 5552 6.861055 CACATAACTTGTTTACATGGTTGGAC 59.139 38.462 0.00 0.00 36.00 4.02
5150 5566 9.733556 TGTACCATAGAATTTCACATAACTTGT 57.266 29.630 0.00 0.00 39.91 3.16
5157 5573 9.912634 CAAGTTTTGTACCATAGAATTTCACAT 57.087 29.630 0.00 0.00 0.00 3.21
5159 5575 9.959749 TTCAAGTTTTGTACCATAGAATTTCAC 57.040 29.630 0.00 0.00 0.00 3.18
5160 5576 9.959749 GTTCAAGTTTTGTACCATAGAATTTCA 57.040 29.630 0.00 0.00 0.00 2.69
5161 5577 9.406828 GGTTCAAGTTTTGTACCATAGAATTTC 57.593 33.333 11.30 0.00 46.64 2.17
5171 5587 5.968254 TGAAAAGGGTTCAAGTTTTGTACC 58.032 37.500 8.55 8.55 46.67 3.34
5172 5588 7.892778 TTTGAAAAGGGTTCAAGTTTTGTAC 57.107 32.000 2.15 0.00 39.30 2.90
5173 5589 8.097662 ACATTTGAAAAGGGTTCAAGTTTTGTA 58.902 29.630 2.15 0.00 39.30 2.41
5174 5590 6.939730 ACATTTGAAAAGGGTTCAAGTTTTGT 59.060 30.769 2.15 3.50 39.30 2.83
5175 5591 7.376435 ACATTTGAAAAGGGTTCAAGTTTTG 57.624 32.000 2.15 3.02 39.30 2.44
5176 5592 7.663493 TGAACATTTGAAAAGGGTTCAAGTTTT 59.337 29.630 15.78 0.00 40.26 2.43
5180 5596 7.608308 TTTGAACATTTGAAAAGGGTTCAAG 57.392 32.000 22.62 0.65 45.74 3.02
5181 5597 7.094592 GGTTTTGAACATTTGAAAAGGGTTCAA 60.095 33.333 21.25 21.25 44.79 2.69
5182 5598 6.372937 GGTTTTGAACATTTGAAAAGGGTTCA 59.627 34.615 14.77 14.77 40.86 3.18
5183 5599 6.372937 TGGTTTTGAACATTTGAAAAGGGTTC 59.627 34.615 11.21 11.21 37.00 3.62
5192 5653 4.653341 AGGGACATGGTTTTGAACATTTGA 59.347 37.500 0.00 0.00 0.00 2.69
5233 5700 5.949952 AGTATTTACAACATTTGGGAGGGAC 59.050 40.000 0.00 0.00 34.12 4.46
5238 5705 9.357161 ACAAAGTAGTATTTACAACATTTGGGA 57.643 29.630 0.00 0.00 34.12 4.37
5269 5909 4.189231 GTTGCCGGTAGAAGTGACATAAT 58.811 43.478 1.90 0.00 0.00 1.28
5272 5912 1.346395 TGTTGCCGGTAGAAGTGACAT 59.654 47.619 1.90 0.00 0.00 3.06
5310 5950 8.697507 ATAATAATTGAAAGCCTAGGGACAAG 57.302 34.615 11.72 0.00 0.00 3.16
5405 6045 9.352191 TGTTTTTATAAGGGTTTGTGCTACTTA 57.648 29.630 0.00 0.00 0.00 2.24
5446 6086 7.344352 CCCCCAGGAATTTGAATGTATTCTTAA 59.656 37.037 6.21 1.92 34.73 1.85
5447 6087 6.838612 CCCCCAGGAATTTGAATGTATTCTTA 59.161 38.462 6.21 0.00 34.73 2.10
5450 6090 4.962362 ACCCCCAGGAATTTGAATGTATTC 59.038 41.667 0.00 0.00 36.73 1.75
5477 6117 1.003839 GTCGTTGGTGGATGCAGGA 60.004 57.895 0.00 0.00 0.00 3.86
5478 6118 2.390599 CGTCGTTGGTGGATGCAGG 61.391 63.158 0.00 0.00 0.00 4.85
5479 6119 3.027170 GCGTCGTTGGTGGATGCAG 62.027 63.158 0.00 0.00 44.04 4.41
5480 6120 3.047280 GCGTCGTTGGTGGATGCA 61.047 61.111 0.00 0.00 44.04 3.96
5481 6121 4.147322 CGCGTCGTTGGTGGATGC 62.147 66.667 0.00 0.00 41.81 3.91
5482 6122 4.147322 GCGCGTCGTTGGTGGATG 62.147 66.667 8.43 0.00 0.00 3.51
5486 6126 4.444024 CATGGCGCGTCGTTGGTG 62.444 66.667 0.75 0.00 0.00 4.17
5487 6127 4.673298 TCATGGCGCGTCGTTGGT 62.673 61.111 0.75 0.00 0.00 3.67
5488 6128 3.853330 CTCATGGCGCGTCGTTGG 61.853 66.667 0.75 0.00 0.00 3.77
5489 6129 4.505217 GCTCATGGCGCGTCGTTG 62.505 66.667 0.75 4.65 0.00 4.10
5492 6132 3.707156 CTTTGCTCATGGCGCGTCG 62.707 63.158 6.09 0.00 45.43 5.12
5493 6133 2.099062 CTTTGCTCATGGCGCGTC 59.901 61.111 2.29 2.29 45.43 5.19
5494 6134 4.107051 GCTTTGCTCATGGCGCGT 62.107 61.111 8.43 0.00 45.43 6.01
5495 6135 3.807538 AGCTTTGCTCATGGCGCG 61.808 61.111 0.00 0.00 45.43 6.86
5519 6159 4.154347 GACAGAGGCCCAGGAGCG 62.154 72.222 0.00 0.00 0.00 5.03
5520 6160 3.791586 GGACAGAGGCCCAGGAGC 61.792 72.222 0.00 0.00 0.00 4.70
5521 6161 3.086600 GGGACAGAGGCCCAGGAG 61.087 72.222 2.20 0.00 45.31 3.69
5533 6173 0.550914 AAGTTTGCTCCACTGGGACA 59.449 50.000 0.00 0.00 38.64 4.02
5534 6174 0.954452 CAAGTTTGCTCCACTGGGAC 59.046 55.000 0.00 0.00 38.64 4.46
5535 6175 0.550914 ACAAGTTTGCTCCACTGGGA 59.449 50.000 0.00 0.00 42.29 4.37
5536 6176 1.402787 AACAAGTTTGCTCCACTGGG 58.597 50.000 0.00 0.00 0.00 4.45
5537 6177 4.853924 ATAAACAAGTTTGCTCCACTGG 57.146 40.909 8.37 0.00 34.23 4.00
5538 6178 6.150976 TGGATATAAACAAGTTTGCTCCACTG 59.849 38.462 15.55 0.00 34.16 3.66
5539 6179 6.245408 TGGATATAAACAAGTTTGCTCCACT 58.755 36.000 15.55 0.00 34.16 4.00
5540 6180 6.404734 CCTGGATATAAACAAGTTTGCTCCAC 60.405 42.308 15.55 3.16 34.75 4.02
5541 6181 5.652014 CCTGGATATAAACAAGTTTGCTCCA 59.348 40.000 17.20 17.20 35.91 3.86
5542 6182 5.885912 TCCTGGATATAAACAAGTTTGCTCC 59.114 40.000 8.37 10.79 34.23 4.70
5543 6183 6.599638 ACTCCTGGATATAAACAAGTTTGCTC 59.400 38.462 8.37 2.87 34.23 4.26
5544 6184 6.485171 ACTCCTGGATATAAACAAGTTTGCT 58.515 36.000 8.37 0.00 34.23 3.91
5545 6185 6.759497 ACTCCTGGATATAAACAAGTTTGC 57.241 37.500 8.37 0.00 34.23 3.68
5546 6186 8.970691 CAAACTCCTGGATATAAACAAGTTTG 57.029 34.615 14.10 14.10 43.10 2.93
5547 6187 8.706322 ACAAACTCCTGGATATAAACAAGTTT 57.294 30.769 0.00 3.47 36.45 2.66
5548 6188 9.449719 CTACAAACTCCTGGATATAAACAAGTT 57.550 33.333 0.00 0.00 0.00 2.66
5549 6189 8.822805 TCTACAAACTCCTGGATATAAACAAGT 58.177 33.333 0.00 0.00 0.00 3.16
5550 6190 9.667107 TTCTACAAACTCCTGGATATAAACAAG 57.333 33.333 0.00 0.00 0.00 3.16
5551 6191 9.667107 CTTCTACAAACTCCTGGATATAAACAA 57.333 33.333 0.00 0.00 0.00 2.83
5552 6192 7.769044 GCTTCTACAAACTCCTGGATATAAACA 59.231 37.037 0.00 0.00 0.00 2.83
5553 6193 7.769044 TGCTTCTACAAACTCCTGGATATAAAC 59.231 37.037 0.00 0.00 0.00 2.01
5554 6194 7.857456 TGCTTCTACAAACTCCTGGATATAAA 58.143 34.615 0.00 0.00 0.00 1.40
5555 6195 7.432148 TGCTTCTACAAACTCCTGGATATAA 57.568 36.000 0.00 0.00 0.00 0.98
5556 6196 7.272978 GTTGCTTCTACAAACTCCTGGATATA 58.727 38.462 0.00 0.00 0.00 0.86
5557 6197 5.957771 TGCTTCTACAAACTCCTGGATAT 57.042 39.130 0.00 0.00 0.00 1.63
5558 6198 5.488341 GTTGCTTCTACAAACTCCTGGATA 58.512 41.667 0.00 0.00 0.00 2.59
5559 6199 4.327680 GTTGCTTCTACAAACTCCTGGAT 58.672 43.478 0.00 0.00 0.00 3.41
5560 6200 3.740115 GTTGCTTCTACAAACTCCTGGA 58.260 45.455 0.00 0.00 0.00 3.86
5561 6201 2.480419 CGTTGCTTCTACAAACTCCTGG 59.520 50.000 0.00 0.00 0.00 4.45
5562 6202 3.184581 GTCGTTGCTTCTACAAACTCCTG 59.815 47.826 0.00 0.00 0.00 3.86
5563 6203 3.069729 AGTCGTTGCTTCTACAAACTCCT 59.930 43.478 0.00 0.00 0.00 3.69
5564 6204 3.184581 CAGTCGTTGCTTCTACAAACTCC 59.815 47.826 0.00 0.00 0.00 3.85
5565 6205 3.184581 CCAGTCGTTGCTTCTACAAACTC 59.815 47.826 0.00 0.00 0.00 3.01
5566 6206 3.131396 CCAGTCGTTGCTTCTACAAACT 58.869 45.455 0.00 0.00 0.00 2.66
5567 6207 3.128349 TCCAGTCGTTGCTTCTACAAAC 58.872 45.455 0.00 0.00 0.00 2.93
5568 6208 3.462483 TCCAGTCGTTGCTTCTACAAA 57.538 42.857 0.00 0.00 0.00 2.83
5569 6209 3.462483 TTCCAGTCGTTGCTTCTACAA 57.538 42.857 0.00 0.00 0.00 2.41
5570 6210 3.244078 ACATTCCAGTCGTTGCTTCTACA 60.244 43.478 0.00 0.00 0.00 2.74
5571 6211 3.326747 ACATTCCAGTCGTTGCTTCTAC 58.673 45.455 0.00 0.00 0.00 2.59
5572 6212 3.585862 GACATTCCAGTCGTTGCTTCTA 58.414 45.455 0.00 0.00 0.00 2.10
5573 6213 2.417719 GACATTCCAGTCGTTGCTTCT 58.582 47.619 0.00 0.00 0.00 2.85
5574 6214 2.882742 GACATTCCAGTCGTTGCTTC 57.117 50.000 0.00 0.00 0.00 3.86
5582 6222 2.279582 ACATCGACGACATTCCAGTC 57.720 50.000 0.00 0.00 35.19 3.51
5583 6223 4.261489 GGTATACATCGACGACATTCCAGT 60.261 45.833 0.00 0.00 0.00 4.00
5584 6224 4.227538 GGTATACATCGACGACATTCCAG 58.772 47.826 0.00 0.00 0.00 3.86
5585 6225 3.633065 TGGTATACATCGACGACATTCCA 59.367 43.478 0.00 5.05 0.00 3.53
5586 6226 4.023450 TCTGGTATACATCGACGACATTCC 60.023 45.833 0.00 2.42 0.00 3.01
5587 6227 5.104562 TCTGGTATACATCGACGACATTC 57.895 43.478 0.00 0.00 0.00 2.67
5588 6228 5.298527 TCTTCTGGTATACATCGACGACATT 59.701 40.000 0.00 0.00 0.00 2.71
5589 6229 4.820173 TCTTCTGGTATACATCGACGACAT 59.180 41.667 0.00 0.00 0.00 3.06
5590 6230 4.034858 GTCTTCTGGTATACATCGACGACA 59.965 45.833 0.00 0.00 0.00 4.35
5591 6231 4.525686 GTCTTCTGGTATACATCGACGAC 58.474 47.826 0.00 7.08 0.00 4.34
5592 6232 3.246936 CGTCTTCTGGTATACATCGACGA 59.753 47.826 18.86 0.00 41.36 4.20
5593 6233 3.002042 ACGTCTTCTGGTATACATCGACG 59.998 47.826 20.54 20.54 42.90 5.12
5594 6234 4.034858 TGACGTCTTCTGGTATACATCGAC 59.965 45.833 17.92 3.17 0.00 4.20
5595 6235 4.193865 TGACGTCTTCTGGTATACATCGA 58.806 43.478 17.92 0.00 0.00 3.59
5596 6236 4.547406 TGACGTCTTCTGGTATACATCG 57.453 45.455 17.92 1.50 0.00 3.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.