Multiple sequence alignment - TraesCS3D01G391900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G391900 chr3D 100.000 7712 0 0 1 7712 507040419 507032708 0.000000e+00 14242
1 TraesCS3D01G391900 chr3D 85.855 304 35 3 526 822 356632808 356633110 4.490000e-82 316
2 TraesCS3D01G391900 chr3D 95.833 168 6 1 1672 1839 528190517 528190683 3.550000e-68 270
3 TraesCS3D01G391900 chr3A 94.868 4443 149 44 1838 6222 645140987 645136566 0.000000e+00 6868
4 TraesCS3D01G391900 chr3A 91.562 1268 69 12 6225 7473 645136531 645135283 0.000000e+00 1714
5 TraesCS3D01G391900 chr3A 86.532 891 67 33 822 1679 645141856 645140986 0.000000e+00 931
6 TraesCS3D01G391900 chr3A 89.858 424 28 7 1 413 645145503 645145084 1.470000e-146 531
7 TraesCS3D01G391900 chr3B 94.076 3123 120 22 2277 5355 669437894 669434793 0.000000e+00 4682
8 TraesCS3D01G391900 chr3B 88.543 1702 103 36 12 1677 669440317 669438672 0.000000e+00 1978
9 TraesCS3D01G391900 chr3B 90.000 940 76 7 6225 7155 669432549 669431619 0.000000e+00 1199
10 TraesCS3D01G391900 chr3B 93.194 764 33 11 5342 6104 669433378 669432633 0.000000e+00 1105
11 TraesCS3D01G391900 chr3B 89.858 424 41 1 1838 2259 669438675 669438252 1.890000e-150 544
12 TraesCS3D01G391900 chr3B 83.649 581 48 18 7140 7711 669431604 669431062 3.210000e-138 503
13 TraesCS3D01G391900 chr2B 89.299 271 22 2 528 791 72827901 72827631 4.460000e-87 333
14 TraesCS3D01G391900 chr2B 96.970 165 5 0 1675 1839 312294491 312294655 2.120000e-70 278
15 TraesCS3D01G391900 chr2B 96.933 163 5 0 1678 1840 478189799 478189637 2.740000e-69 274
16 TraesCS3D01G391900 chr2B 91.146 192 13 2 1649 1839 165020318 165020506 2.760000e-64 257
17 TraesCS3D01G391900 chr7D 91.102 236 19 2 4311 4546 33075317 33075550 1.250000e-82 318
18 TraesCS3D01G391900 chr7D 97.531 162 4 0 1678 1839 485098440 485098279 2.120000e-70 278
19 TraesCS3D01G391900 chr7D 95.604 91 4 0 3904 3994 33075225 33075315 6.240000e-31 147
20 TraesCS3D01G391900 chr1B 86.093 302 35 5 519 813 397836130 397836431 1.250000e-82 318
21 TraesCS3D01G391900 chr1B 88.462 208 20 4 1634 1839 499946709 499946504 1.660000e-61 248
22 TraesCS3D01G391900 chr7B 85.621 306 35 4 526 822 413594814 413595119 5.810000e-81 313
23 TraesCS3D01G391900 chr1D 85.479 303 36 3 526 821 318585927 318585626 7.520000e-80 309
24 TraesCS3D01G391900 chr5D 85.479 303 35 6 527 822 543227423 543227123 2.700000e-79 307
25 TraesCS3D01G391900 chr5D 96.296 162 6 0 1678 1839 334801456 334801295 4.590000e-67 267
26 TraesCS3D01G391900 chr4D 85.197 304 35 5 527 821 208562622 208562320 3.500000e-78 303
27 TraesCS3D01G391900 chr2D 85.473 296 37 6 527 821 22771232 22770942 3.500000e-78 303
28 TraesCS3D01G391900 chr4B 84.790 309 37 7 523 821 109316830 109316522 1.260000e-77 302
29 TraesCS3D01G391900 chr6D 96.933 163 5 0 1677 1839 6398441 6398279 2.740000e-69 274
30 TraesCS3D01G391900 chr2A 95.833 168 7 0 1672 1839 460903997 460904164 9.860000e-69 272


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G391900 chr3D 507032708 507040419 7711 True 14242.0 14242 100.000000 1 7712 1 chr3D.!!$R1 7711
1 TraesCS3D01G391900 chr3A 645135283 645145503 10220 True 2511.0 6868 90.705000 1 7473 4 chr3A.!!$R1 7472
2 TraesCS3D01G391900 chr3B 669431062 669440317 9255 True 1668.5 4682 89.886667 12 7711 6 chr3B.!!$R1 7699

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
648 3803 0.173481 TTCGGCGATTCAGTGAGAGG 59.827 55.0 11.76 0.0 0.00 3.69 F
1617 4831 0.039165 GGAAGCGGCAAAGTGGAAAG 60.039 55.0 1.45 0.0 0.00 2.62 F
3060 6629 0.786435 ACAATTCCAGCTTCCCCCTT 59.214 50.0 0.00 0.0 0.00 3.95 F
3921 7491 2.930826 TATAGGCTAAGCAAGGTGGC 57.069 50.0 0.00 0.0 0.00 5.01 F
4546 8120 2.967599 TGCAGTATGTAGACAGCAGG 57.032 50.0 0.00 0.0 36.98 4.85 F
6231 11316 0.542938 AGCATCCCTATCCGCTGCTA 60.543 55.0 0.00 0.0 41.15 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1968 5185 0.536460 TCAACCTTCCTTTCCCGTGC 60.536 55.000 0.0 0.00 0.00 5.34 R
3124 6693 0.886563 AAGCCATCTGCAGAAACAGC 59.113 50.000 22.5 19.63 44.83 4.40 R
4108 7678 1.546476 AGGAAGTTACACTGAGCGGAG 59.454 52.381 0.0 0.00 0.00 4.63 R
5240 8854 0.757188 TGCGGGGTTGTTTGGTCAAT 60.757 50.000 0.0 0.00 0.00 2.57 R
6493 11586 0.038890 TTCGGAATGTCCCCAATGCA 59.961 50.000 0.0 0.00 31.13 3.96 R
7601 12764 0.038166 TGGGGAACACATCTGGCTTC 59.962 55.000 0.0 0.00 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
142 152 4.675029 AGACAAACGGACGGCGGG 62.675 66.667 13.24 2.09 0.00 6.13
157 167 1.227089 CGGGAGATTGTCCTCTGCG 60.227 63.158 0.00 0.00 46.06 5.18
179 189 9.890085 CTGCGTGTTTTTATATTTGATTGATTG 57.110 29.630 0.00 0.00 0.00 2.67
227 242 4.389576 CCGACGCAGGCTGCAAAC 62.390 66.667 35.94 24.28 45.36 2.93
361 384 3.987807 TGCAACGAAAACAAAAGCAAG 57.012 38.095 0.00 0.00 0.00 4.01
365 388 3.436700 ACGAAAACAAAAGCAAGAGGG 57.563 42.857 0.00 0.00 0.00 4.30
371 394 7.608761 ACGAAAACAAAAGCAAGAGGGTATATA 59.391 33.333 0.00 0.00 0.00 0.86
382 405 7.072454 AGCAAGAGGGTATATATGTTTCCTTGA 59.928 37.037 16.33 0.00 31.69 3.02
450 3080 5.171476 AGATAATATTTGCGTCGGATCCTG 58.829 41.667 10.75 3.62 0.00 3.86
475 3105 8.836413 TGAAGAAGATTTATTTATGCTAACGGG 58.164 33.333 0.00 0.00 0.00 5.28
492 3122 1.000274 CGGGCCCACAAAGAAGAAAAG 60.000 52.381 24.92 0.00 0.00 2.27
496 3651 3.243873 GGCCCACAAAGAAGAAAAGAAGG 60.244 47.826 0.00 0.00 0.00 3.46
513 3668 4.238514 AGAAGGAAAAGATTGACTCGACG 58.761 43.478 0.00 0.00 0.00 5.12
515 3670 1.059264 GGAAAAGATTGACTCGACGCG 59.941 52.381 3.53 3.53 0.00 6.01
559 3714 4.111577 TCTGGTTGAATGGTTAGAGGGAT 58.888 43.478 0.00 0.00 0.00 3.85
560 3715 4.080356 TCTGGTTGAATGGTTAGAGGGATG 60.080 45.833 0.00 0.00 0.00 3.51
561 3716 3.053693 TGGTTGAATGGTTAGAGGGATGG 60.054 47.826 0.00 0.00 0.00 3.51
582 3737 1.709994 GGTATCCCCAGCCCTTCAGG 61.710 65.000 0.00 0.00 39.47 3.86
601 3756 1.363744 GGTTCAAGTCCTGATGCTCG 58.636 55.000 0.00 0.00 32.78 5.03
623 3778 7.862372 GCTCGCATTATTTCTGGATTTATTTCA 59.138 33.333 0.00 0.00 0.00 2.69
625 3780 8.352201 TCGCATTATTTCTGGATTTATTTCAGG 58.648 33.333 0.00 0.00 0.00 3.86
632 3787 9.807649 ATTTCTGGATTTATTTCAGGATTTTCG 57.192 29.630 0.00 0.00 0.00 3.46
638 3793 5.828299 TTATTTCAGGATTTTCGGCGATT 57.172 34.783 11.76 0.00 0.00 3.34
640 3795 2.394930 TCAGGATTTTCGGCGATTCA 57.605 45.000 11.76 0.00 0.00 2.57
641 3796 2.279741 TCAGGATTTTCGGCGATTCAG 58.720 47.619 11.76 5.54 0.00 3.02
643 3798 2.009774 AGGATTTTCGGCGATTCAGTG 58.990 47.619 11.76 0.00 0.00 3.66
644 3799 2.006888 GGATTTTCGGCGATTCAGTGA 58.993 47.619 11.76 0.00 0.00 3.41
645 3800 2.030946 GGATTTTCGGCGATTCAGTGAG 59.969 50.000 11.76 0.00 0.00 3.51
648 3803 0.173481 TTCGGCGATTCAGTGAGAGG 59.827 55.000 11.76 0.00 0.00 3.69
649 3804 0.679960 TCGGCGATTCAGTGAGAGGA 60.680 55.000 4.99 0.00 0.00 3.71
650 3805 0.248825 CGGCGATTCAGTGAGAGGAG 60.249 60.000 0.00 0.00 0.00 3.69
652 3807 1.202359 GGCGATTCAGTGAGAGGAGAC 60.202 57.143 0.00 0.00 0.00 3.36
665 3826 0.727970 AGGAGACGTTCTCATCGACG 59.272 55.000 14.26 0.00 45.12 5.12
705 3867 7.921214 GGTGACTTCGTAAATCTCAAGATGATA 59.079 37.037 0.00 0.00 34.49 2.15
706 3868 9.469807 GTGACTTCGTAAATCTCAAGATGATAT 57.530 33.333 0.00 0.00 34.49 1.63
711 3873 6.582672 TCGTAAATCTCAAGATGATATGTCGC 59.417 38.462 0.00 0.00 34.49 5.19
714 3876 9.411801 GTAAATCTCAAGATGATATGTCGCTTA 57.588 33.333 0.00 0.00 34.49 3.09
716 3878 9.499479 AAATCTCAAGATGATATGTCGCTTAAT 57.501 29.630 0.00 0.00 34.49 1.40
717 3879 8.700722 ATCTCAAGATGATATGTCGCTTAATC 57.299 34.615 0.00 0.00 32.68 1.75
718 3880 7.890515 TCTCAAGATGATATGTCGCTTAATCT 58.109 34.615 0.00 0.00 0.00 2.40
719 3881 8.026026 TCTCAAGATGATATGTCGCTTAATCTC 58.974 37.037 0.00 0.00 0.00 2.75
720 3882 7.890515 TCAAGATGATATGTCGCTTAATCTCT 58.109 34.615 0.00 0.00 0.00 3.10
721 3883 8.026026 TCAAGATGATATGTCGCTTAATCTCTC 58.974 37.037 0.00 0.00 0.00 3.20
722 3884 6.550843 AGATGATATGTCGCTTAATCTCTCG 58.449 40.000 0.00 0.00 0.00 4.04
723 3885 5.941948 TGATATGTCGCTTAATCTCTCGA 57.058 39.130 0.00 0.00 0.00 4.04
725 3887 6.374578 TGATATGTCGCTTAATCTCTCGAAG 58.625 40.000 0.00 0.00 32.49 3.79
729 3892 3.423867 GTCGCTTAATCTCTCGAAGATGC 59.576 47.826 9.79 8.58 44.26 3.91
738 3901 2.230992 CTCTCGAAGATGCTCATAGGGG 59.769 54.545 0.00 0.00 33.89 4.79
740 3903 2.366916 CTCGAAGATGCTCATAGGGGTT 59.633 50.000 0.00 0.00 33.89 4.11
741 3904 2.103094 TCGAAGATGCTCATAGGGGTTG 59.897 50.000 0.00 0.00 0.00 3.77
749 3912 1.136961 TCATAGGGGTTGGGTGTGCA 61.137 55.000 0.00 0.00 0.00 4.57
793 3964 5.705902 AGTGTATGCGCGTATGTATGAATA 58.294 37.500 20.45 0.00 0.00 1.75
798 3969 4.707563 TGCGCGTATGTATGAATATTTGC 58.292 39.130 8.43 0.00 0.00 3.68
803 3974 6.234213 GCGTATGTATGAATATTTGCGTCTC 58.766 40.000 0.00 0.00 0.00 3.36
804 3975 6.089551 GCGTATGTATGAATATTTGCGTCTCT 59.910 38.462 0.00 0.00 0.00 3.10
806 3977 8.576281 CGTATGTATGAATATTTGCGTCTCTAC 58.424 37.037 0.00 0.00 0.00 2.59
807 3978 7.891183 ATGTATGAATATTTGCGTCTCTACC 57.109 36.000 0.00 0.00 0.00 3.18
808 3979 5.918576 TGTATGAATATTTGCGTCTCTACCG 59.081 40.000 0.00 0.00 0.00 4.02
809 3980 4.380841 TGAATATTTGCGTCTCTACCGT 57.619 40.909 0.00 0.00 0.00 4.83
810 3981 4.109766 TGAATATTTGCGTCTCTACCGTG 58.890 43.478 0.00 0.00 0.00 4.94
811 3982 3.795623 ATATTTGCGTCTCTACCGTGT 57.204 42.857 0.00 0.00 0.00 4.49
812 3983 2.450609 ATTTGCGTCTCTACCGTGTT 57.549 45.000 0.00 0.00 0.00 3.32
813 3984 3.581024 ATTTGCGTCTCTACCGTGTTA 57.419 42.857 0.00 0.00 0.00 2.41
814 3985 3.367992 TTTGCGTCTCTACCGTGTTAA 57.632 42.857 0.00 0.00 0.00 2.01
815 3986 2.624316 TGCGTCTCTACCGTGTTAAG 57.376 50.000 0.00 0.00 0.00 1.85
999 4191 4.544689 CCCTCAGTCTCGCTCGCG 62.545 72.222 0.00 0.00 41.35 5.87
1207 4420 2.424557 GTCCGTCTAGACTGTCACTCA 58.575 52.381 20.34 0.00 33.79 3.41
1241 4454 2.434884 CAGCTGCCACGGGTACTG 60.435 66.667 0.00 0.00 42.99 2.74
1245 4458 3.246112 TGCCACGGGTACTGCCTT 61.246 61.111 0.00 0.00 39.14 4.35
1246 4459 1.895020 CTGCCACGGGTACTGCCTTA 61.895 60.000 0.00 0.00 39.14 2.69
1247 4460 1.153429 GCCACGGGTACTGCCTTAG 60.153 63.158 0.00 0.00 39.14 2.18
1248 4461 1.153429 CCACGGGTACTGCCTTAGC 60.153 63.158 0.00 0.00 39.14 3.09
1259 4472 0.618458 TGCCTTAGCTAGGTTGGTGG 59.382 55.000 0.00 0.00 46.61 4.61
1401 4614 0.386476 ACGACGCCTGTGTACTTTCA 59.614 50.000 0.00 0.00 0.00 2.69
1405 4618 2.210116 ACGCCTGTGTACTTTCACTTG 58.790 47.619 0.00 0.00 38.90 3.16
1406 4619 1.531149 CGCCTGTGTACTTTCACTTGG 59.469 52.381 0.00 0.00 38.90 3.61
1407 4620 2.572290 GCCTGTGTACTTTCACTTGGT 58.428 47.619 0.00 0.00 38.90 3.67
1408 4621 2.949644 GCCTGTGTACTTTCACTTGGTT 59.050 45.455 0.00 0.00 38.90 3.67
1409 4622 3.243068 GCCTGTGTACTTTCACTTGGTTG 60.243 47.826 0.00 0.00 38.90 3.77
1410 4623 3.243068 CCTGTGTACTTTCACTTGGTTGC 60.243 47.826 0.00 0.00 38.90 4.17
1442 4655 0.874390 TTCATGCTGTTGCCGACTTC 59.126 50.000 0.00 0.00 38.71 3.01
1489 4702 2.182030 CGAGCAACGACCCCTCTC 59.818 66.667 0.00 0.00 45.77 3.20
1517 4731 9.558396 TTCACCAAAAATAGATGAAGCAAATTT 57.442 25.926 0.00 0.00 0.00 1.82
1546 4760 8.236586 GCGGTTCATATATCTGATTTTTATGCA 58.763 33.333 0.00 0.00 0.00 3.96
1585 4799 7.233757 GCCCTCTCCTCTAGTAAATTTATCTCA 59.766 40.741 0.31 0.00 0.00 3.27
1586 4800 8.802267 CCCTCTCCTCTAGTAAATTTATCTCAG 58.198 40.741 0.31 0.00 0.00 3.35
1587 4801 8.802267 CCTCTCCTCTAGTAAATTTATCTCAGG 58.198 40.741 0.31 9.23 0.00 3.86
1617 4831 0.039165 GGAAGCGGCAAAGTGGAAAG 60.039 55.000 1.45 0.00 0.00 2.62
1683 4897 7.784470 ATGGACAGACTTAATATCTACTCCC 57.216 40.000 8.75 0.00 0.00 4.30
1684 4898 6.923670 TGGACAGACTTAATATCTACTCCCT 58.076 40.000 8.75 0.00 0.00 4.20
1685 4899 7.005296 TGGACAGACTTAATATCTACTCCCTC 58.995 42.308 8.75 0.00 0.00 4.30
1686 4900 6.434965 GGACAGACTTAATATCTACTCCCTCC 59.565 46.154 0.00 0.00 0.00 4.30
1687 4901 6.005198 ACAGACTTAATATCTACTCCCTCCG 58.995 44.000 0.00 0.00 0.00 4.63
1688 4902 6.005198 CAGACTTAATATCTACTCCCTCCGT 58.995 44.000 0.00 0.00 0.00 4.69
1689 4903 6.490721 CAGACTTAATATCTACTCCCTCCGTT 59.509 42.308 0.00 0.00 0.00 4.44
1690 4904 6.716173 AGACTTAATATCTACTCCCTCCGTTC 59.284 42.308 0.00 0.00 0.00 3.95
1691 4905 5.774184 ACTTAATATCTACTCCCTCCGTTCC 59.226 44.000 0.00 0.00 0.00 3.62
1692 4906 4.472690 AATATCTACTCCCTCCGTTCCT 57.527 45.455 0.00 0.00 0.00 3.36
1693 4907 5.595814 AATATCTACTCCCTCCGTTCCTA 57.404 43.478 0.00 0.00 0.00 2.94
1694 4908 3.967467 ATCTACTCCCTCCGTTCCTAA 57.033 47.619 0.00 0.00 0.00 2.69
1695 4909 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
1696 4910 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
1697 4911 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
1698 4912 5.961897 TCTACTCCCTCCGTTCCTAAATAT 58.038 41.667 0.00 0.00 0.00 1.28
1699 4913 7.095183 TCTACTCCCTCCGTTCCTAAATATA 57.905 40.000 0.00 0.00 0.00 0.86
1700 4914 7.529555 TCTACTCCCTCCGTTCCTAAATATAA 58.470 38.462 0.00 0.00 0.00 0.98
1701 4915 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
1702 4916 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
1703 4917 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
1704 4918 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
1705 4919 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
1706 4920 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
1707 4921 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
1708 4922 7.441458 CCTCCGTTCCTAAATATAAGTCTTTGG 59.559 40.741 0.00 0.00 0.00 3.28
1709 4923 8.081517 TCCGTTCCTAAATATAAGTCTTTGGA 57.918 34.615 0.00 0.00 0.00 3.53
1710 4924 8.202137 TCCGTTCCTAAATATAAGTCTTTGGAG 58.798 37.037 0.00 0.00 0.00 3.86
1711 4925 8.202137 CCGTTCCTAAATATAAGTCTTTGGAGA 58.798 37.037 0.00 0.00 0.00 3.71
1712 4926 9.250624 CGTTCCTAAATATAAGTCTTTGGAGAG 57.749 37.037 0.00 0.00 31.07 3.20
1725 4939 8.830915 AGTCTTTGGAGAGATTTCACTATAGA 57.169 34.615 6.78 0.00 31.07 1.98
1726 4940 8.691797 AGTCTTTGGAGAGATTTCACTATAGAC 58.308 37.037 6.78 8.58 35.52 2.59
1727 4941 7.923878 GTCTTTGGAGAGATTTCACTATAGACC 59.076 40.741 6.78 0.00 32.29 3.85
1728 4942 7.619698 TCTTTGGAGAGATTTCACTATAGACCA 59.380 37.037 6.78 0.00 0.00 4.02
1729 4943 6.716934 TGGAGAGATTTCACTATAGACCAC 57.283 41.667 6.78 0.00 0.00 4.16
1730 4944 6.194967 TGGAGAGATTTCACTATAGACCACA 58.805 40.000 6.78 0.00 0.00 4.17
1731 4945 6.841229 TGGAGAGATTTCACTATAGACCACAT 59.159 38.462 6.78 0.00 0.00 3.21
1732 4946 8.004801 TGGAGAGATTTCACTATAGACCACATA 58.995 37.037 6.78 0.00 0.00 2.29
1733 4947 8.301002 GGAGAGATTTCACTATAGACCACATAC 58.699 40.741 6.78 0.00 0.00 2.39
1734 4948 7.877003 AGAGATTTCACTATAGACCACATACG 58.123 38.462 6.78 0.00 0.00 3.06
1735 4949 6.982852 AGATTTCACTATAGACCACATACGG 58.017 40.000 6.78 0.00 0.00 4.02
1736 4950 6.776116 AGATTTCACTATAGACCACATACGGA 59.224 38.462 6.78 0.00 0.00 4.69
1737 4951 6.387041 TTTCACTATAGACCACATACGGAG 57.613 41.667 6.78 0.00 0.00 4.63
1738 4952 3.819337 TCACTATAGACCACATACGGAGC 59.181 47.826 6.78 0.00 0.00 4.70
1739 4953 3.568430 CACTATAGACCACATACGGAGCA 59.432 47.826 6.78 0.00 0.00 4.26
1740 4954 4.037565 CACTATAGACCACATACGGAGCAA 59.962 45.833 6.78 0.00 0.00 3.91
1741 4955 4.647853 ACTATAGACCACATACGGAGCAAA 59.352 41.667 6.78 0.00 0.00 3.68
1742 4956 2.851263 AGACCACATACGGAGCAAAA 57.149 45.000 0.00 0.00 0.00 2.44
1743 4957 3.350219 AGACCACATACGGAGCAAAAT 57.650 42.857 0.00 0.00 0.00 1.82
1744 4958 3.009723 AGACCACATACGGAGCAAAATG 58.990 45.455 0.00 0.00 0.00 2.32
1745 4959 3.006940 GACCACATACGGAGCAAAATGA 58.993 45.455 0.00 0.00 0.00 2.57
1746 4960 3.417101 ACCACATACGGAGCAAAATGAA 58.583 40.909 0.00 0.00 0.00 2.57
1747 4961 4.016444 ACCACATACGGAGCAAAATGAAT 58.984 39.130 0.00 0.00 0.00 2.57
1748 4962 4.142403 ACCACATACGGAGCAAAATGAATG 60.142 41.667 0.00 0.00 0.00 2.67
1749 4963 4.096231 CCACATACGGAGCAAAATGAATGA 59.904 41.667 0.00 0.00 0.00 2.57
1750 4964 5.392919 CCACATACGGAGCAAAATGAATGAA 60.393 40.000 0.00 0.00 0.00 2.57
1751 4965 6.267817 CACATACGGAGCAAAATGAATGAAT 58.732 36.000 0.00 0.00 0.00 2.57
1752 4966 6.415867 CACATACGGAGCAAAATGAATGAATC 59.584 38.462 0.00 0.00 0.00 2.52
1753 4967 6.319658 ACATACGGAGCAAAATGAATGAATCT 59.680 34.615 0.00 0.00 0.00 2.40
1754 4968 7.498900 ACATACGGAGCAAAATGAATGAATCTA 59.501 33.333 0.00 0.00 0.00 1.98
1755 4969 6.124088 ACGGAGCAAAATGAATGAATCTAC 57.876 37.500 0.00 0.00 0.00 2.59
1756 4970 5.647658 ACGGAGCAAAATGAATGAATCTACA 59.352 36.000 0.00 0.00 0.00 2.74
1757 4971 5.967674 CGGAGCAAAATGAATGAATCTACAC 59.032 40.000 0.00 0.00 0.00 2.90
1758 4972 6.183360 CGGAGCAAAATGAATGAATCTACACT 60.183 38.462 0.00 0.00 0.00 3.55
1759 4973 7.192232 GGAGCAAAATGAATGAATCTACACTC 58.808 38.462 0.00 0.00 0.00 3.51
1760 4974 7.066766 GGAGCAAAATGAATGAATCTACACTCT 59.933 37.037 0.00 0.00 0.00 3.24
1761 4975 9.102757 GAGCAAAATGAATGAATCTACACTCTA 57.897 33.333 0.00 0.00 0.00 2.43
1762 4976 9.453572 AGCAAAATGAATGAATCTACACTCTAA 57.546 29.630 0.00 0.00 0.00 2.10
1768 4982 8.791327 TGAATGAATCTACACTCTAAAATGCA 57.209 30.769 0.00 0.00 0.00 3.96
1769 4983 9.399797 TGAATGAATCTACACTCTAAAATGCAT 57.600 29.630 0.00 0.00 0.00 3.96
1770 4984 9.875675 GAATGAATCTACACTCTAAAATGCATC 57.124 33.333 0.00 0.00 0.00 3.91
1771 4985 9.624373 AATGAATCTACACTCTAAAATGCATCT 57.376 29.630 0.00 0.00 0.00 2.90
1782 4996 9.809096 ACTCTAAAATGCATCTATATACATCCG 57.191 33.333 0.00 0.00 0.00 4.18
1783 4997 9.809096 CTCTAAAATGCATCTATATACATCCGT 57.191 33.333 0.00 0.00 0.00 4.69
1788 5002 8.877808 AATGCATCTATATACATCCGTATGTG 57.122 34.615 3.56 0.00 45.99 3.21
1789 5003 7.639113 TGCATCTATATACATCCGTATGTGA 57.361 36.000 3.56 0.00 45.99 3.58
1790 5004 8.237811 TGCATCTATATACATCCGTATGTGAT 57.762 34.615 3.56 0.26 45.99 3.06
1791 5005 8.695456 TGCATCTATATACATCCGTATGTGATT 58.305 33.333 3.56 0.00 45.99 2.57
1792 5006 9.186323 GCATCTATATACATCCGTATGTGATTC 57.814 37.037 3.56 0.00 45.99 2.52
1799 5013 6.405278 ACATCCGTATGTGATTCATAGTGA 57.595 37.500 0.00 0.00 44.79 3.41
1800 5014 6.816136 ACATCCGTATGTGATTCATAGTGAA 58.184 36.000 0.00 0.00 44.79 3.18
1801 5015 7.272244 ACATCCGTATGTGATTCATAGTGAAA 58.728 34.615 0.00 0.00 44.79 2.69
1802 5016 7.933577 ACATCCGTATGTGATTCATAGTGAAAT 59.066 33.333 0.00 0.00 44.79 2.17
1803 5017 7.946655 TCCGTATGTGATTCATAGTGAAATC 57.053 36.000 0.00 0.00 40.12 2.17
1804 5018 7.726216 TCCGTATGTGATTCATAGTGAAATCT 58.274 34.615 0.00 0.00 40.12 2.40
1805 5019 7.867909 TCCGTATGTGATTCATAGTGAAATCTC 59.132 37.037 0.00 0.00 40.12 2.75
1806 5020 7.869937 CCGTATGTGATTCATAGTGAAATCTCT 59.130 37.037 0.00 0.00 40.12 3.10
1807 5021 9.899226 CGTATGTGATTCATAGTGAAATCTCTA 57.101 33.333 0.00 0.00 40.12 2.43
1811 5025 9.942850 TGTGATTCATAGTGAAATCTCTACAAA 57.057 29.630 0.00 0.00 40.12 2.83
1832 5046 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
1833 5047 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
1834 5048 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
1835 5049 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
1836 5050 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
1877 5091 2.771943 AGGAATGGAGAATCGGCAAGTA 59.228 45.455 0.00 0.00 34.37 2.24
1879 5093 2.246719 ATGGAGAATCGGCAAGTAGC 57.753 50.000 0.00 0.00 44.65 3.58
1968 5185 6.835174 TGGAGATTGGAGAGGAAGAAATATG 58.165 40.000 0.00 0.00 0.00 1.78
1977 5194 3.945285 GAGGAAGAAATATGCACGGGAAA 59.055 43.478 0.00 0.00 0.00 3.13
2121 5338 1.026584 TTTCTCTCGGACACGTGTCA 58.973 50.000 40.51 25.40 46.47 3.58
2143 5360 6.084551 GTCAAAACACACGTCATTTCGTATTC 59.915 38.462 0.00 0.00 42.27 1.75
2190 5407 1.032014 GAACAGCCAGCCAAAAGACA 58.968 50.000 0.00 0.00 0.00 3.41
2191 5408 1.000938 GAACAGCCAGCCAAAAGACAG 60.001 52.381 0.00 0.00 0.00 3.51
2266 5489 7.710475 AGCTAAAACAGAGCAAATTAAAAGCAA 59.290 29.630 0.00 0.00 42.69 3.91
2292 5855 8.522178 AAACAAGAACAGAGAAGAACTATACG 57.478 34.615 0.00 0.00 0.00 3.06
2349 5912 5.076318 AGGAGGAGAGAGAGAACCATCATAT 59.924 44.000 0.00 0.00 0.00 1.78
2417 5980 7.020827 TCACCAGTTTTATCTCCTTGATTCT 57.979 36.000 0.00 0.00 36.65 2.40
2420 5983 8.669243 CACCAGTTTTATCTCCTTGATTCTAAC 58.331 37.037 0.00 0.00 36.65 2.34
2421 5984 8.606830 ACCAGTTTTATCTCCTTGATTCTAACT 58.393 33.333 0.00 0.00 36.65 2.24
2509 6076 2.231215 AGATGCATCTAGCCGTGAAC 57.769 50.000 27.73 0.00 44.83 3.18
2514 6081 3.717707 TGCATCTAGCCGTGAACTAATC 58.282 45.455 0.00 0.00 44.83 1.75
2631 6198 8.772250 AGGTTTGTCTCATCTGGATTCTATTTA 58.228 33.333 0.00 0.00 0.00 1.40
2724 6292 1.620819 TCCTCTGGAGAAGTTGCAGTC 59.379 52.381 0.00 0.00 44.82 3.51
2758 6326 7.990886 ACCATCGATACAAGGTGTTATTATTGT 59.009 33.333 4.44 0.00 39.16 2.71
2772 6340 8.162880 GTGTTATTATTGTCATAGCTATCGCAC 58.837 37.037 2.34 1.82 39.10 5.34
2820 6389 5.065731 AGTGTTTCTTTGTCTTGCTTGAGAG 59.934 40.000 0.00 0.00 0.00 3.20
2821 6390 5.065218 GTGTTTCTTTGTCTTGCTTGAGAGA 59.935 40.000 0.00 0.00 0.00 3.10
2848 6417 1.402968 CTCCTTGGTGCATATGTGTGC 59.597 52.381 4.29 0.00 45.25 4.57
2897 6466 8.617290 TCCCTAATTACTTGTTTGAACTCTTC 57.383 34.615 0.00 0.00 0.00 2.87
3060 6629 0.786435 ACAATTCCAGCTTCCCCCTT 59.214 50.000 0.00 0.00 0.00 3.95
3234 6803 4.396166 GGTGCCACATGATATACCTAATGC 59.604 45.833 0.00 0.00 0.00 3.56
3461 7031 7.396055 ACAAAATACTACATGGCATGTTTACCT 59.604 33.333 35.36 16.52 41.63 3.08
3462 7032 8.898761 CAAAATACTACATGGCATGTTTACCTA 58.101 33.333 35.36 17.19 41.63 3.08
3463 7033 9.469097 AAAATACTACATGGCATGTTTACCTAA 57.531 29.630 35.36 16.48 41.63 2.69
3464 7034 8.677148 AATACTACATGGCATGTTTACCTAAG 57.323 34.615 35.36 25.73 41.63 2.18
3465 7035 6.308015 ACTACATGGCATGTTTACCTAAGA 57.692 37.500 35.36 15.07 41.63 2.10
3466 7036 6.717289 ACTACATGGCATGTTTACCTAAGAA 58.283 36.000 35.36 14.36 41.63 2.52
3467 7037 6.823689 ACTACATGGCATGTTTACCTAAGAAG 59.176 38.462 35.36 23.79 41.63 2.85
3921 7491 2.930826 TATAGGCTAAGCAAGGTGGC 57.069 50.000 0.00 0.00 0.00 5.01
4148 7718 9.561069 ACTTCCTGTATTTTAGTATAATGCTGG 57.439 33.333 15.64 15.64 37.74 4.85
4546 8120 2.967599 TGCAGTATGTAGACAGCAGG 57.032 50.000 0.00 0.00 36.98 4.85
5021 8595 3.274288 CAGAGAATGGTAAGGCTTCCAC 58.726 50.000 17.02 6.15 36.50 4.02
5100 8692 9.185192 CTTTATTTGAAGTTGTCACATTTCCTC 57.815 33.333 1.32 0.00 35.39 3.71
5240 8854 5.643777 GCCTTAGTTGCAGAGATCTTTTGTA 59.356 40.000 0.00 0.00 0.00 2.41
5263 8877 2.336088 CAAACAACCCCGCAGCAG 59.664 61.111 0.00 0.00 0.00 4.24
5265 8879 3.731766 AAACAACCCCGCAGCAGGT 62.732 57.895 0.00 0.00 38.27 4.00
5336 8952 4.324641 GGCCCTTCTTTATCTTCTCTTGGT 60.325 45.833 0.00 0.00 0.00 3.67
5370 10415 6.885952 TGTACAGAATTTCAAATTCCCGAA 57.114 33.333 17.67 0.89 0.00 4.30
5421 10466 9.840427 AAAATAGATTGGAAAGATAAACACACG 57.160 29.630 0.00 0.00 0.00 4.49
5544 10590 5.546621 TCCATTACTTGGTATCCAGCTAC 57.453 43.478 0.00 0.00 46.52 3.58
5563 10609 7.255312 CCAGCTACCATACTTTTTGTTTGTGTA 60.255 37.037 0.00 0.00 0.00 2.90
5735 10781 4.922206 TCTTCAAAGGATATGTTGGTGCT 58.078 39.130 0.00 0.00 0.00 4.40
5966 11012 2.565391 TGATTACAAGAACGGGCTCTCA 59.435 45.455 0.00 0.00 0.00 3.27
5984 11030 0.999406 CACGACACCCTAAAGCATCG 59.001 55.000 0.00 0.00 35.74 3.84
6002 11048 3.499737 GCCATGTGGTTCTCGCGG 61.500 66.667 6.13 0.00 37.57 6.46
6050 11097 3.066760 GCAAACCTGACACAAACTAAGCT 59.933 43.478 0.00 0.00 0.00 3.74
6051 11098 4.440112 GCAAACCTGACACAAACTAAGCTT 60.440 41.667 3.48 3.48 0.00 3.74
6106 11153 7.262990 AGCCCTTTCTATCAATGCTATATCA 57.737 36.000 0.00 0.00 0.00 2.15
6107 11154 7.337167 AGCCCTTTCTATCAATGCTATATCAG 58.663 38.462 0.00 0.00 0.00 2.90
6119 11172 4.723248 TGCTATATCAGTCGTATTCGCAG 58.277 43.478 0.00 0.00 36.96 5.18
6126 11179 5.244785 TCAGTCGTATTCGCAGTATCTTT 57.755 39.130 0.00 0.00 36.96 2.52
6134 11187 2.540515 TCGCAGTATCTTTGTAGCAGC 58.459 47.619 0.00 0.00 0.00 5.25
6169 11222 4.059511 CAAACCTGACACCGTACATAACA 58.940 43.478 0.00 0.00 0.00 2.41
6170 11223 4.546829 AACCTGACACCGTACATAACAT 57.453 40.909 0.00 0.00 0.00 2.71
6171 11224 4.546829 ACCTGACACCGTACATAACATT 57.453 40.909 0.00 0.00 0.00 2.71
6172 11225 5.664294 ACCTGACACCGTACATAACATTA 57.336 39.130 0.00 0.00 0.00 1.90
6173 11226 6.040209 ACCTGACACCGTACATAACATTAA 57.960 37.500 0.00 0.00 0.00 1.40
6174 11227 6.646267 ACCTGACACCGTACATAACATTAAT 58.354 36.000 0.00 0.00 0.00 1.40
6175 11228 7.107542 ACCTGACACCGTACATAACATTAATT 58.892 34.615 0.00 0.00 0.00 1.40
6176 11229 7.065324 ACCTGACACCGTACATAACATTAATTG 59.935 37.037 0.00 0.00 0.00 2.32
6177 11230 7.279090 CCTGACACCGTACATAACATTAATTGA 59.721 37.037 0.00 0.00 0.00 2.57
6178 11231 8.725405 TGACACCGTACATAACATTAATTGAT 57.275 30.769 0.00 0.00 0.00 2.57
6179 11232 8.822855 TGACACCGTACATAACATTAATTGATC 58.177 33.333 0.00 0.00 0.00 2.92
6180 11233 8.149973 ACACCGTACATAACATTAATTGATCC 57.850 34.615 0.00 0.00 0.00 3.36
6181 11234 7.990886 ACACCGTACATAACATTAATTGATCCT 59.009 33.333 0.00 0.00 0.00 3.24
6222 11275 4.410228 TGCTTAAAGAGTCAGCATCCCTAT 59.590 41.667 0.00 0.00 38.65 2.57
6231 11316 0.542938 AGCATCCCTATCCGCTGCTA 60.543 55.000 0.00 0.00 41.15 3.49
6257 11342 3.859961 ACTCGCACAATCTAATCTGAACG 59.140 43.478 0.00 0.00 0.00 3.95
6303 11388 6.854496 TCTTGTTGATGTTGGTGTAGTAAC 57.146 37.500 0.00 0.00 0.00 2.50
6324 11409 4.495422 ACTCCGTGAGTTGTGATTCATAC 58.505 43.478 1.23 0.00 40.28 2.39
6340 11425 3.884895 TCATACACCCCAGTAAGCAATG 58.115 45.455 0.00 0.00 0.00 2.82
6437 11530 2.694240 TGGATGGCCATTCCCGGA 60.694 61.111 21.92 0.00 39.92 5.14
6449 11542 2.249844 TTCCCGGACAACTTTGAGTC 57.750 50.000 0.73 0.00 0.00 3.36
6450 11543 1.420430 TCCCGGACAACTTTGAGTCT 58.580 50.000 0.73 0.00 35.18 3.24
6453 11546 0.868406 CGGACAACTTTGAGTCTGCC 59.132 55.000 0.00 0.00 34.69 4.85
6493 11586 1.145738 AGAGGTTTGGTGCAAGGATGT 59.854 47.619 0.00 0.00 0.00 3.06
6520 11613 1.407437 GGGACATTCCGAAGCATCAGT 60.407 52.381 0.00 0.00 37.43 3.41
6692 11789 3.387374 AGCCCATCTCAGATACACTTCTG 59.613 47.826 0.00 0.00 43.70 3.02
6716 11813 1.507141 GGCCGCGATTAGTCCATTGG 61.507 60.000 8.23 0.00 0.00 3.16
6723 11820 4.601019 GCGATTAGTCCATTGGATTGTTG 58.399 43.478 9.01 3.90 32.73 3.33
6745 11842 2.159179 ATGGATGTTTAAGGGGCCAC 57.841 50.000 4.39 0.00 0.00 5.01
6852 11958 5.817816 GCTGCTGTATTAGTCCTGTAATGTT 59.182 40.000 0.00 0.00 0.00 2.71
6891 11997 1.031571 TAGGAAGCAATTGCCAGCCG 61.032 55.000 26.45 0.00 43.38 5.52
6901 12007 3.741476 GCCAGCCGCCAGAAAGTG 61.741 66.667 0.00 0.00 0.00 3.16
6906 12012 0.751643 AGCCGCCAGAAAGTGTGTTT 60.752 50.000 0.00 0.00 0.00 2.83
6909 12015 1.264288 CCGCCAGAAAGTGTGTTTCTC 59.736 52.381 0.00 0.00 36.69 2.87
6914 12020 5.057149 GCCAGAAAGTGTGTTTCTCTTCTA 58.943 41.667 0.00 0.00 36.69 2.10
6930 12036 7.546250 TCTCTTCTACTGGAGTTCTTCATTT 57.454 36.000 0.00 0.00 0.00 2.32
6952 12061 1.016653 GGAACTCGCTTCTGACAGGC 61.017 60.000 1.81 0.00 0.00 4.85
6961 12070 1.480137 CTTCTGACAGGCTAGACCCAG 59.520 57.143 1.81 0.00 40.58 4.45
6975 12084 1.484653 GACCCAGCCAAAACCACTTTT 59.515 47.619 0.00 0.00 0.00 2.27
6976 12085 1.912731 ACCCAGCCAAAACCACTTTTT 59.087 42.857 0.00 0.00 37.96 1.94
7064 12173 0.107017 AAAGCATGGATGGGACGGAG 60.107 55.000 0.00 0.00 0.00 4.63
7222 12371 1.353609 GCAATGCCGTTGGTTGCATC 61.354 55.000 0.00 0.00 46.97 3.91
7285 12434 1.153208 GAGGGGCTCATCACAGCAG 60.153 63.158 0.00 0.00 41.65 4.24
7387 12540 2.046864 GCGCCCCCTTCTTTTCCTC 61.047 63.158 0.00 0.00 0.00 3.71
7505 12658 4.203076 GTGACGGCGGCGATAGGT 62.203 66.667 38.93 15.77 0.00 3.08
7506 12659 3.454573 TGACGGCGGCGATAGGTT 61.455 61.111 38.93 14.89 0.00 3.50
7507 12660 2.657620 GACGGCGGCGATAGGTTC 60.658 66.667 38.93 19.86 0.00 3.62
7508 12661 3.135056 GACGGCGGCGATAGGTTCT 62.135 63.158 38.93 13.14 0.00 3.01
7509 12662 2.354773 CGGCGGCGATAGGTTCTC 60.355 66.667 29.19 0.00 0.00 2.87
7510 12663 2.029221 GGCGGCGATAGGTTCTCC 59.971 66.667 12.98 0.00 0.00 3.71
7511 12664 2.792947 GGCGGCGATAGGTTCTCCA 61.793 63.158 12.98 0.00 35.89 3.86
7512 12665 1.367840 GCGGCGATAGGTTCTCCAT 59.632 57.895 12.98 0.00 35.89 3.41
7513 12666 0.601558 GCGGCGATAGGTTCTCCATA 59.398 55.000 12.98 0.00 35.89 2.74
7514 12667 1.402984 GCGGCGATAGGTTCTCCATAG 60.403 57.143 12.98 0.00 35.89 2.23
7515 12668 1.202582 CGGCGATAGGTTCTCCATAGG 59.797 57.143 0.00 0.00 35.89 2.57
7516 12669 1.550976 GGCGATAGGTTCTCCATAGGG 59.449 57.143 0.00 0.00 35.89 3.53
7517 12670 1.550976 GCGATAGGTTCTCCATAGGGG 59.449 57.143 0.00 0.00 35.89 4.79
7518 12671 2.890814 CGATAGGTTCTCCATAGGGGT 58.109 52.381 0.00 0.00 38.11 4.95
7519 12672 2.563179 CGATAGGTTCTCCATAGGGGTG 59.437 54.545 0.00 0.00 38.11 4.61
7520 12673 3.754172 CGATAGGTTCTCCATAGGGGTGA 60.754 52.174 0.00 0.00 37.39 4.02
7521 12674 2.897823 AGGTTCTCCATAGGGGTGAT 57.102 50.000 0.00 0.00 38.86 3.06
7522 12675 5.590818 GATAGGTTCTCCATAGGGGTGATA 58.409 45.833 0.00 0.00 38.86 2.15
7523 12676 4.295905 AGGTTCTCCATAGGGGTGATAA 57.704 45.455 0.00 0.00 38.86 1.75
7524 12677 4.641868 AGGTTCTCCATAGGGGTGATAAA 58.358 43.478 0.00 0.00 38.86 1.40
7525 12678 4.412528 AGGTTCTCCATAGGGGTGATAAAC 59.587 45.833 0.00 0.00 38.86 2.01
7526 12679 4.412528 GGTTCTCCATAGGGGTGATAAACT 59.587 45.833 0.00 0.00 38.86 2.66
7527 12680 5.605488 GGTTCTCCATAGGGGTGATAAACTA 59.395 44.000 0.00 0.00 38.86 2.24
7528 12681 6.100714 GGTTCTCCATAGGGGTGATAAACTAA 59.899 42.308 0.00 0.00 38.86 2.24
7529 12682 6.742559 TCTCCATAGGGGTGATAAACTAAC 57.257 41.667 0.00 0.00 34.31 2.34
7530 12683 6.206787 TCTCCATAGGGGTGATAAACTAACA 58.793 40.000 0.00 0.00 34.31 2.41
7531 12684 6.674861 TCTCCATAGGGGTGATAAACTAACAA 59.325 38.462 0.00 0.00 34.31 2.83
7532 12685 6.895782 TCCATAGGGGTGATAAACTAACAAG 58.104 40.000 0.00 0.00 38.11 3.16
7533 12686 6.062095 CCATAGGGGTGATAAACTAACAAGG 58.938 44.000 0.00 0.00 0.00 3.61
7534 12687 4.586306 AGGGGTGATAAACTAACAAGGG 57.414 45.455 0.00 0.00 0.00 3.95
7535 12688 3.021695 GGGGTGATAAACTAACAAGGGC 58.978 50.000 0.00 0.00 0.00 5.19
7536 12689 3.562609 GGGGTGATAAACTAACAAGGGCA 60.563 47.826 0.00 0.00 0.00 5.36
7537 12690 3.694566 GGGTGATAAACTAACAAGGGCAG 59.305 47.826 0.00 0.00 0.00 4.85
7539 12692 4.332828 GTGATAAACTAACAAGGGCAGGT 58.667 43.478 0.00 0.00 0.00 4.00
7551 12704 4.202212 ACAAGGGCAGGTTGATACAAAAAC 60.202 41.667 1.05 0.00 0.00 2.43
7556 12709 4.685628 GGCAGGTTGATACAAAAACATGTG 59.314 41.667 0.00 0.00 39.57 3.21
7557 12710 4.150451 GCAGGTTGATACAAAAACATGTGC 59.850 41.667 0.00 0.00 39.57 4.57
7558 12711 4.685628 CAGGTTGATACAAAAACATGTGCC 59.314 41.667 0.00 0.00 34.33 5.01
7559 12712 4.343526 AGGTTGATACAAAAACATGTGCCA 59.656 37.500 0.00 0.00 34.75 4.92
7564 12727 5.243507 TGATACAAAAACATGTGCCATCACT 59.756 36.000 0.00 0.00 43.49 3.41
7565 12728 3.719924 ACAAAAACATGTGCCATCACTG 58.280 40.909 0.00 0.00 43.49 3.66
7567 12730 4.121317 CAAAAACATGTGCCATCACTGTT 58.879 39.130 0.00 0.00 43.49 3.16
7572 12735 0.466007 TGTGCCATCACTGTTGCTGT 60.466 50.000 0.00 0.00 43.49 4.40
7579 12742 0.681733 TCACTGTTGCTGTCCTCTCC 59.318 55.000 0.00 0.00 0.00 3.71
7580 12743 0.683973 CACTGTTGCTGTCCTCTCCT 59.316 55.000 0.00 0.00 0.00 3.69
7592 12755 0.323629 CCTCTCCTTAAACGCCCACA 59.676 55.000 0.00 0.00 0.00 4.17
7593 12756 1.676014 CCTCTCCTTAAACGCCCACAG 60.676 57.143 0.00 0.00 0.00 3.66
7630 12793 0.328926 GTGTTCCCCAAATCCCCGTA 59.671 55.000 0.00 0.00 0.00 4.02
7631 12794 0.328926 TGTTCCCCAAATCCCCGTAC 59.671 55.000 0.00 0.00 0.00 3.67
7632 12795 0.745486 GTTCCCCAAATCCCCGTACG 60.745 60.000 8.69 8.69 0.00 3.67
7633 12796 1.200092 TTCCCCAAATCCCCGTACGT 61.200 55.000 15.21 0.00 0.00 3.57
7645 12808 2.202623 GTACGTCTCCTGCCTGCG 60.203 66.667 0.00 0.00 0.00 5.18
7666 12829 3.198863 CTCTGAAAGCAGCATTGACAC 57.801 47.619 0.00 0.00 42.01 3.67
7669 12832 2.153645 TGAAAGCAGCATTGACACGAT 58.846 42.857 0.00 0.00 0.00 3.73
7670 12833 2.553602 TGAAAGCAGCATTGACACGATT 59.446 40.909 0.00 0.00 0.00 3.34
7676 12839 4.037690 GCAGCATTGACACGATTTATTCC 58.962 43.478 0.00 0.00 0.00 3.01
7696 12859 4.928263 TCCTCTCATCAGAACTCAGAAGA 58.072 43.478 0.00 0.00 0.00 2.87
7697 12860 5.517924 TCCTCTCATCAGAACTCAGAAGAT 58.482 41.667 0.00 0.00 0.00 2.40
7698 12861 5.360429 TCCTCTCATCAGAACTCAGAAGATG 59.640 44.000 0.00 0.00 37.90 2.90
7711 12874 0.302890 GAAGATGCATCGAGCCGTTG 59.697 55.000 20.67 0.00 44.83 4.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
101 107 2.262915 GGCCGCATCCCGATAGAG 59.737 66.667 0.00 0.00 40.02 2.43
142 152 2.086054 AACACGCAGAGGACAATCTC 57.914 50.000 0.00 0.00 0.00 2.75
179 189 3.788434 TCGAAATTCGAACAGCACTTC 57.212 42.857 16.25 0.00 46.90 3.01
231 246 1.354040 CTCGGTAGAAAGCAGCACAG 58.646 55.000 0.00 0.00 0.00 3.66
295 310 9.827411 CTTCTTTTAGTTGGTGAAAACTATAGC 57.173 33.333 0.00 0.00 41.17 2.97
361 384 7.224297 TGCTTCAAGGAAACATATATACCCTC 58.776 38.462 0.00 0.00 0.00 4.30
365 388 8.940952 GGAGATGCTTCAAGGAAACATATATAC 58.059 37.037 2.07 0.00 29.95 1.47
371 394 4.015084 CTGGAGATGCTTCAAGGAAACAT 58.985 43.478 2.07 0.00 32.06 2.71
382 405 2.476199 AGGAAGCTACTGGAGATGCTT 58.524 47.619 0.00 0.00 46.69 3.91
426 3056 5.289675 CAGGATCCGACGCAAATATTATCTC 59.710 44.000 5.98 0.00 0.00 2.75
439 3069 3.444703 AATCTTCTTCAGGATCCGACG 57.555 47.619 5.98 5.03 0.00 5.12
450 3080 7.803659 GCCCGTTAGCATAAATAAATCTTCTTC 59.196 37.037 0.00 0.00 0.00 2.87
475 3105 3.636764 TCCTTCTTTTCTTCTTTGTGGGC 59.363 43.478 0.00 0.00 0.00 5.36
492 3122 3.181529 GCGTCGAGTCAATCTTTTCCTTC 60.182 47.826 0.00 0.00 0.00 3.46
496 3651 1.719780 ACGCGTCGAGTCAATCTTTTC 59.280 47.619 5.58 0.00 0.00 2.29
513 3668 2.355837 TTCGCACCACTCTCACGC 60.356 61.111 0.00 0.00 0.00 5.34
515 3670 3.952811 GGTTCGCACCACTCTCAC 58.047 61.111 0.00 0.00 43.61 3.51
541 3696 3.947834 CACCATCCCTCTAACCATTCAAC 59.052 47.826 0.00 0.00 0.00 3.18
582 3737 1.363744 CGAGCATCAGGACTTGAACC 58.636 55.000 0.00 0.00 39.77 3.62
588 3743 3.482156 AATAATGCGAGCATCAGGACT 57.518 42.857 11.26 0.00 35.31 3.85
591 3746 3.058432 CCAGAAATAATGCGAGCATCAGG 60.058 47.826 11.26 2.17 35.31 3.86
592 3747 3.811497 TCCAGAAATAATGCGAGCATCAG 59.189 43.478 11.26 0.00 35.31 2.90
597 3752 7.862372 TGAAATAAATCCAGAAATAATGCGAGC 59.138 33.333 0.00 0.00 0.00 5.03
623 3778 2.009774 CACTGAATCGCCGAAAATCCT 58.990 47.619 0.00 0.00 0.00 3.24
625 3780 2.930040 TCTCACTGAATCGCCGAAAATC 59.070 45.455 0.00 0.00 0.00 2.17
627 3782 2.337583 CTCTCACTGAATCGCCGAAAA 58.662 47.619 0.00 0.00 0.00 2.29
632 3787 1.107114 TCTCCTCTCACTGAATCGCC 58.893 55.000 0.00 0.00 0.00 5.54
638 3793 2.224548 TGAGAACGTCTCCTCTCACTGA 60.225 50.000 12.53 0.00 42.41 3.41
640 3795 2.570415 TGAGAACGTCTCCTCTCACT 57.430 50.000 12.53 0.00 42.41 3.41
643 3798 2.031191 GTCGATGAGAACGTCTCCTCTC 59.969 54.545 7.84 7.84 42.73 3.20
644 3799 2.011222 GTCGATGAGAACGTCTCCTCT 58.989 52.381 11.01 0.34 42.73 3.69
645 3800 1.267632 CGTCGATGAGAACGTCTCCTC 60.268 57.143 0.00 8.49 42.73 3.71
648 3803 1.800399 GTCGTCGATGAGAACGTCTC 58.200 55.000 7.79 7.74 43.65 3.36
649 3804 0.094901 CGTCGTCGATGAGAACGTCT 59.905 55.000 7.79 0.00 39.71 4.18
650 3805 0.094216 TCGTCGTCGATGAGAACGTC 59.906 55.000 13.11 0.00 41.35 4.34
652 3807 0.586748 CCTCGTCGTCGATGAGAACG 60.587 60.000 35.32 20.56 45.52 3.95
705 3867 4.902443 TCTTCGAGAGATTAAGCGACAT 57.098 40.909 0.00 0.00 41.60 3.06
706 3868 4.602006 CATCTTCGAGAGATTAAGCGACA 58.398 43.478 7.20 0.00 42.55 4.35
711 3873 7.028962 CCTATGAGCATCTTCGAGAGATTAAG 58.971 42.308 7.20 0.00 42.55 1.85
714 3876 4.220382 CCCTATGAGCATCTTCGAGAGATT 59.780 45.833 7.20 0.00 42.55 2.40
716 3878 3.153130 CCCTATGAGCATCTTCGAGAGA 58.847 50.000 0.79 0.79 39.13 3.10
717 3879 2.230992 CCCCTATGAGCATCTTCGAGAG 59.769 54.545 0.00 0.00 34.92 3.20
718 3880 2.242926 CCCCTATGAGCATCTTCGAGA 58.757 52.381 0.00 0.00 34.92 4.04
719 3881 1.967066 ACCCCTATGAGCATCTTCGAG 59.033 52.381 0.00 0.00 34.92 4.04
720 3882 2.088104 ACCCCTATGAGCATCTTCGA 57.912 50.000 0.00 0.00 34.92 3.71
721 3883 2.487934 CAACCCCTATGAGCATCTTCG 58.512 52.381 0.00 0.00 34.92 3.79
722 3884 2.487986 CCCAACCCCTATGAGCATCTTC 60.488 54.545 0.00 0.00 34.92 2.87
723 3885 1.496429 CCCAACCCCTATGAGCATCTT 59.504 52.381 0.00 0.00 34.92 2.40
725 3887 0.846693 ACCCAACCCCTATGAGCATC 59.153 55.000 0.00 0.00 0.00 3.91
729 3892 0.394352 GCACACCCAACCCCTATGAG 60.394 60.000 0.00 0.00 0.00 2.90
749 3912 3.807553 TCATCAATATGGACGCACACAT 58.192 40.909 0.00 0.00 33.61 3.21
765 3928 2.223711 ACATACGCGCATACACTCATCA 60.224 45.455 5.73 0.00 0.00 3.07
793 3964 2.450609 AACACGGTAGAGACGCAAAT 57.549 45.000 0.00 0.00 34.00 2.32
798 3969 5.916883 TCTTTTTCTTAACACGGTAGAGACG 59.083 40.000 0.00 0.00 37.36 4.18
803 3974 6.592798 TGTGTCTTTTTCTTAACACGGTAG 57.407 37.500 0.00 0.00 43.81 3.18
804 3975 6.762187 TCATGTGTCTTTTTCTTAACACGGTA 59.238 34.615 0.00 0.00 43.81 4.02
806 3977 6.055231 TCATGTGTCTTTTTCTTAACACGG 57.945 37.500 0.00 0.00 43.81 4.94
807 3978 6.136071 CCTCATGTGTCTTTTTCTTAACACG 58.864 40.000 0.00 0.00 43.81 4.49
808 3979 6.039382 ACCCTCATGTGTCTTTTTCTTAACAC 59.961 38.462 0.00 0.00 41.80 3.32
809 3980 6.039270 CACCCTCATGTGTCTTTTTCTTAACA 59.961 38.462 0.00 0.00 0.00 2.41
810 3981 6.438763 CACCCTCATGTGTCTTTTTCTTAAC 58.561 40.000 0.00 0.00 0.00 2.01
811 3982 5.534654 CCACCCTCATGTGTCTTTTTCTTAA 59.465 40.000 0.00 0.00 34.35 1.85
812 3983 5.070001 CCACCCTCATGTGTCTTTTTCTTA 58.930 41.667 0.00 0.00 34.35 2.10
813 3984 3.891366 CCACCCTCATGTGTCTTTTTCTT 59.109 43.478 0.00 0.00 34.35 2.52
814 3985 3.117512 ACCACCCTCATGTGTCTTTTTCT 60.118 43.478 0.00 0.00 34.35 2.52
815 3986 3.222603 ACCACCCTCATGTGTCTTTTTC 58.777 45.455 0.00 0.00 34.35 2.29
873 4045 2.278271 GTAGTCGCTCTCTGCCGC 60.278 66.667 0.00 0.00 38.78 6.53
971 4163 4.753662 CTGAGGGGGTCCGGTCGA 62.754 72.222 0.00 0.00 38.33 4.20
999 4191 1.971695 CGAAGGTTTGGGAGGTGCC 60.972 63.158 0.00 0.00 0.00 5.01
1002 4194 2.434774 GGCGAAGGTTTGGGAGGT 59.565 61.111 0.00 0.00 0.00 3.85
1207 4420 0.818296 CTGCTAGCACCGGTAGAGTT 59.182 55.000 14.93 0.00 35.90 3.01
1231 4444 1.067212 CTAGCTAAGGCAGTACCCGTG 59.933 57.143 0.00 0.00 40.58 4.94
1245 4458 1.837439 CACCATCCACCAACCTAGCTA 59.163 52.381 0.00 0.00 0.00 3.32
1246 4459 0.620556 CACCATCCACCAACCTAGCT 59.379 55.000 0.00 0.00 0.00 3.32
1247 4460 0.394352 CCACCATCCACCAACCTAGC 60.394 60.000 0.00 0.00 0.00 3.42
1248 4461 0.394352 GCCACCATCCACCAACCTAG 60.394 60.000 0.00 0.00 0.00 3.02
1410 4623 3.434319 ATGAAGGCAGCGCAACCG 61.434 61.111 11.47 0.00 37.57 4.44
1442 4655 7.281100 ACTGTCCTACTTCACTTTTTCAAAGAG 59.719 37.037 3.24 0.00 0.00 2.85
1489 4702 6.271488 TGCTTCATCTATTTTTGGTGAAGG 57.729 37.500 15.58 2.06 43.57 3.46
1546 4760 1.301479 GAGGGCGTTTGGTTCGACT 60.301 57.895 0.00 0.00 36.49 4.18
1677 4891 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
1678 4892 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
1679 4893 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
1680 4894 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
1681 4895 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
1682 4896 7.441458 CCAAAGACTTATATTTAGGAACGGAGG 59.559 40.741 0.00 0.00 0.00 4.30
1683 4897 8.202137 TCCAAAGACTTATATTTAGGAACGGAG 58.798 37.037 0.00 0.00 0.00 4.63
1684 4898 8.081517 TCCAAAGACTTATATTTAGGAACGGA 57.918 34.615 0.00 0.00 0.00 4.69
1685 4899 8.202137 TCTCCAAAGACTTATATTTAGGAACGG 58.798 37.037 0.00 0.00 0.00 4.44
1686 4900 9.250624 CTCTCCAAAGACTTATATTTAGGAACG 57.749 37.037 0.00 0.00 0.00 3.95
1699 4913 9.261035 TCTATAGTGAAATCTCTCCAAAGACTT 57.739 33.333 0.00 0.00 0.00 3.01
1700 4914 8.691797 GTCTATAGTGAAATCTCTCCAAAGACT 58.308 37.037 0.00 0.00 0.00 3.24
1701 4915 7.923878 GGTCTATAGTGAAATCTCTCCAAAGAC 59.076 40.741 0.00 0.00 0.00 3.01
1702 4916 7.619698 TGGTCTATAGTGAAATCTCTCCAAAGA 59.380 37.037 0.00 0.00 0.00 2.52
1703 4917 7.708752 GTGGTCTATAGTGAAATCTCTCCAAAG 59.291 40.741 0.00 0.00 0.00 2.77
1704 4918 7.180229 TGTGGTCTATAGTGAAATCTCTCCAAA 59.820 37.037 0.00 0.00 0.00 3.28
1705 4919 6.667848 TGTGGTCTATAGTGAAATCTCTCCAA 59.332 38.462 0.00 0.00 0.00 3.53
1706 4920 6.194967 TGTGGTCTATAGTGAAATCTCTCCA 58.805 40.000 0.00 0.00 0.00 3.86
1707 4921 6.716934 TGTGGTCTATAGTGAAATCTCTCC 57.283 41.667 0.00 0.00 0.00 3.71
1708 4922 8.018520 CGTATGTGGTCTATAGTGAAATCTCTC 58.981 40.741 0.00 0.00 0.00 3.20
1709 4923 7.040340 CCGTATGTGGTCTATAGTGAAATCTCT 60.040 40.741 0.00 0.00 0.00 3.10
1710 4924 7.040617 TCCGTATGTGGTCTATAGTGAAATCTC 60.041 40.741 0.00 0.00 0.00 2.75
1711 4925 6.776116 TCCGTATGTGGTCTATAGTGAAATCT 59.224 38.462 0.00 0.00 0.00 2.40
1712 4926 6.978338 TCCGTATGTGGTCTATAGTGAAATC 58.022 40.000 0.00 0.00 0.00 2.17
1713 4927 6.516860 GCTCCGTATGTGGTCTATAGTGAAAT 60.517 42.308 0.00 0.00 0.00 2.17
1714 4928 5.221185 GCTCCGTATGTGGTCTATAGTGAAA 60.221 44.000 0.00 0.00 0.00 2.69
1715 4929 4.277672 GCTCCGTATGTGGTCTATAGTGAA 59.722 45.833 0.00 0.00 0.00 3.18
1716 4930 3.819337 GCTCCGTATGTGGTCTATAGTGA 59.181 47.826 0.00 0.00 0.00 3.41
1717 4931 3.568430 TGCTCCGTATGTGGTCTATAGTG 59.432 47.826 0.00 0.00 0.00 2.74
1718 4932 3.828921 TGCTCCGTATGTGGTCTATAGT 58.171 45.455 0.00 0.00 0.00 2.12
1719 4933 4.848562 TTGCTCCGTATGTGGTCTATAG 57.151 45.455 0.00 0.00 0.00 1.31
1720 4934 5.601583 TTTTGCTCCGTATGTGGTCTATA 57.398 39.130 0.00 0.00 0.00 1.31
1721 4935 4.481368 TTTTGCTCCGTATGTGGTCTAT 57.519 40.909 0.00 0.00 0.00 1.98
1722 4936 3.965379 TTTTGCTCCGTATGTGGTCTA 57.035 42.857 0.00 0.00 0.00 2.59
1723 4937 2.851263 TTTTGCTCCGTATGTGGTCT 57.149 45.000 0.00 0.00 0.00 3.85
1724 4938 3.006940 TCATTTTGCTCCGTATGTGGTC 58.993 45.455 0.00 0.00 0.00 4.02
1725 4939 3.066291 TCATTTTGCTCCGTATGTGGT 57.934 42.857 0.00 0.00 0.00 4.16
1726 4940 4.096231 TCATTCATTTTGCTCCGTATGTGG 59.904 41.667 0.00 0.00 0.00 4.17
1727 4941 5.233957 TCATTCATTTTGCTCCGTATGTG 57.766 39.130 0.00 0.00 0.00 3.21
1728 4942 5.895636 TTCATTCATTTTGCTCCGTATGT 57.104 34.783 0.00 0.00 0.00 2.29
1729 4943 6.732154 AGATTCATTCATTTTGCTCCGTATG 58.268 36.000 0.00 0.00 0.00 2.39
1730 4944 6.949352 AGATTCATTCATTTTGCTCCGTAT 57.051 33.333 0.00 0.00 0.00 3.06
1731 4945 6.821160 TGTAGATTCATTCATTTTGCTCCGTA 59.179 34.615 0.00 0.00 0.00 4.02
1732 4946 5.647658 TGTAGATTCATTCATTTTGCTCCGT 59.352 36.000 0.00 0.00 0.00 4.69
1733 4947 5.967674 GTGTAGATTCATTCATTTTGCTCCG 59.032 40.000 0.00 0.00 0.00 4.63
1734 4948 7.066766 AGAGTGTAGATTCATTCATTTTGCTCC 59.933 37.037 0.00 0.00 0.00 4.70
1735 4949 7.983307 AGAGTGTAGATTCATTCATTTTGCTC 58.017 34.615 0.00 0.00 0.00 4.26
1736 4950 7.934855 AGAGTGTAGATTCATTCATTTTGCT 57.065 32.000 0.00 0.00 0.00 3.91
1742 4956 9.399797 TGCATTTTAGAGTGTAGATTCATTCAT 57.600 29.630 0.00 0.00 0.00 2.57
1743 4957 8.791327 TGCATTTTAGAGTGTAGATTCATTCA 57.209 30.769 0.00 0.00 0.00 2.57
1744 4958 9.875675 GATGCATTTTAGAGTGTAGATTCATTC 57.124 33.333 0.00 0.00 0.00 2.67
1745 4959 9.624373 AGATGCATTTTAGAGTGTAGATTCATT 57.376 29.630 0.00 0.00 0.00 2.57
1756 4970 9.809096 CGGATGTATATAGATGCATTTTAGAGT 57.191 33.333 11.19 0.00 38.38 3.24
1757 4971 9.809096 ACGGATGTATATAGATGCATTTTAGAG 57.191 33.333 11.19 0.00 38.38 2.43
1761 4975 9.890629 ACATACGGATGTATATAGATGCATTTT 57.109 29.630 12.79 0.00 44.77 1.82
1762 4976 9.317936 CACATACGGATGTATATAGATGCATTT 57.682 33.333 14.23 0.00 44.82 2.32
1763 4977 8.695456 TCACATACGGATGTATATAGATGCATT 58.305 33.333 14.23 1.23 44.82 3.56
1764 4978 8.237811 TCACATACGGATGTATATAGATGCAT 57.762 34.615 14.23 0.00 44.82 3.96
1765 4979 7.639113 TCACATACGGATGTATATAGATGCA 57.361 36.000 14.23 0.00 44.82 3.96
1766 4980 9.186323 GAATCACATACGGATGTATATAGATGC 57.814 37.037 14.23 6.60 44.82 3.91
1773 4987 9.238368 TCACTATGAATCACATACGGATGTATA 57.762 33.333 14.23 6.48 44.82 1.47
1774 4988 8.122472 TCACTATGAATCACATACGGATGTAT 57.878 34.615 14.23 5.54 44.82 2.29
1775 4989 7.519032 TCACTATGAATCACATACGGATGTA 57.481 36.000 14.23 2.61 44.82 2.29
1776 4990 6.816136 TTCACTATGAATCACATACGGATGT 58.184 36.000 7.68 7.68 37.89 3.06
1777 4991 7.713764 TTTCACTATGAATCACATACGGATG 57.286 36.000 5.94 5.94 36.11 3.51
1778 4992 8.370940 AGATTTCACTATGAATCACATACGGAT 58.629 33.333 0.00 0.00 36.11 4.18
1779 4993 7.726216 AGATTTCACTATGAATCACATACGGA 58.274 34.615 0.00 0.00 36.11 4.69
1780 4994 7.869937 AGAGATTTCACTATGAATCACATACGG 59.130 37.037 0.00 0.00 36.11 4.02
1781 4995 8.809159 AGAGATTTCACTATGAATCACATACG 57.191 34.615 0.00 0.00 36.11 3.06
1785 4999 9.942850 TTTGTAGAGATTTCACTATGAATCACA 57.057 29.630 0.00 0.00 36.11 3.58
1807 5021 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
1808 5022 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
1809 5023 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
1810 5024 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
1811 5025 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
1812 5026 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
1813 5027 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
1814 5028 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
1815 5029 7.951806 TGATACTCCCTCCGTTCCTAAATATAA 59.048 37.037 0.00 0.00 0.00 0.98
1816 5030 7.472741 TGATACTCCCTCCGTTCCTAAATATA 58.527 38.462 0.00 0.00 0.00 0.86
1817 5031 6.320518 TGATACTCCCTCCGTTCCTAAATAT 58.679 40.000 0.00 0.00 0.00 1.28
1818 5032 5.708544 TGATACTCCCTCCGTTCCTAAATA 58.291 41.667 0.00 0.00 0.00 1.40
1819 5033 4.553678 TGATACTCCCTCCGTTCCTAAAT 58.446 43.478 0.00 0.00 0.00 1.40
1820 5034 3.958798 CTGATACTCCCTCCGTTCCTAAA 59.041 47.826 0.00 0.00 0.00 1.85
1821 5035 3.563223 CTGATACTCCCTCCGTTCCTAA 58.437 50.000 0.00 0.00 0.00 2.69
1822 5036 2.158505 CCTGATACTCCCTCCGTTCCTA 60.159 54.545 0.00 0.00 0.00 2.94
1823 5037 1.411787 CCTGATACTCCCTCCGTTCCT 60.412 57.143 0.00 0.00 0.00 3.36
1824 5038 1.041437 CCTGATACTCCCTCCGTTCC 58.959 60.000 0.00 0.00 0.00 3.62
1825 5039 1.041437 CCCTGATACTCCCTCCGTTC 58.959 60.000 0.00 0.00 0.00 3.95
1826 5040 0.635009 TCCCTGATACTCCCTCCGTT 59.365 55.000 0.00 0.00 0.00 4.44
1827 5041 0.635009 TTCCCTGATACTCCCTCCGT 59.365 55.000 0.00 0.00 0.00 4.69
1828 5042 1.789523 TTTCCCTGATACTCCCTCCG 58.210 55.000 0.00 0.00 0.00 4.63
1829 5043 4.797912 AAATTTCCCTGATACTCCCTCC 57.202 45.455 0.00 0.00 0.00 4.30
1830 5044 7.323052 AGATAAATTTCCCTGATACTCCCTC 57.677 40.000 0.00 0.00 0.00 4.30
1831 5045 7.713704 AAGATAAATTTCCCTGATACTCCCT 57.286 36.000 0.00 0.00 0.00 4.20
1832 5046 8.103935 CCTAAGATAAATTTCCCTGATACTCCC 58.896 40.741 0.00 0.00 0.00 4.30
1833 5047 8.881262 TCCTAAGATAAATTTCCCTGATACTCC 58.119 37.037 0.00 0.00 0.00 3.85
1877 5091 2.573462 ACTACCATGTCCATTCACAGCT 59.427 45.455 0.00 0.00 0.00 4.24
1879 5093 4.081476 TCTGACTACCATGTCCATTCACAG 60.081 45.833 0.00 0.00 36.21 3.66
1923 5140 1.488812 ACTAAATGCATACCGCCTCCA 59.511 47.619 0.00 0.00 41.33 3.86
1937 5154 6.445139 TCTTCCTCTCCAATCTCCAACTAAAT 59.555 38.462 0.00 0.00 0.00 1.40
1968 5185 0.536460 TCAACCTTCCTTTCCCGTGC 60.536 55.000 0.00 0.00 0.00 5.34
1977 5194 4.290722 AGATCATTTCCTGTCAACCTTCCT 59.709 41.667 0.00 0.00 0.00 3.36
2121 5338 5.050904 TCGAATACGAAATGACGTGTGTTTT 60.051 36.000 0.00 0.00 45.74 2.43
2172 5389 1.035139 CTGTCTTTTGGCTGGCTGTT 58.965 50.000 2.00 0.00 0.00 3.16
2190 5407 7.885297 TGCTCAGTTTTGTTATATTTTGCTCT 58.115 30.769 0.00 0.00 0.00 4.09
2191 5408 8.519492 TTGCTCAGTTTTGTTATATTTTGCTC 57.481 30.769 0.00 0.00 0.00 4.26
2266 5489 8.979574 CGTATAGTTCTTCTCTGTTCTTGTTTT 58.020 33.333 0.00 0.00 0.00 2.43
2292 5855 1.801178 CACTCGTTTCTCAGCTTTCCC 59.199 52.381 0.00 0.00 0.00 3.97
2332 5895 9.995003 ATTCTAACAATATGATGGTTCTCTCTC 57.005 33.333 0.00 0.00 0.00 3.20
2349 5912 5.205056 AGGACCCACACAAAATTCTAACAA 58.795 37.500 0.00 0.00 0.00 2.83
2509 6076 5.948758 AGAAGGGAAAAGCCAAGAAGATTAG 59.051 40.000 0.00 0.00 38.95 1.73
2514 6081 4.642437 GGATAGAAGGGAAAAGCCAAGAAG 59.358 45.833 0.00 0.00 38.95 2.85
2657 6224 8.524870 AAAAGCATTTCAATGTCAACTATCAC 57.475 30.769 1.59 0.00 37.28 3.06
2724 6292 5.346011 CACCTTGTATCGATGGTAATGATCG 59.654 44.000 8.54 0.00 43.32 3.69
2820 6389 2.479566 TGCACCAAGGAGACAATCTC 57.520 50.000 0.00 0.00 42.66 2.75
2821 6390 4.080129 ACATATGCACCAAGGAGACAATCT 60.080 41.667 1.58 0.00 0.00 2.40
2848 6417 9.057089 GGATCTAGGAAACAAGGTAATATTGTG 57.943 37.037 0.00 0.00 39.91 3.33
2897 6466 2.893637 CTCAATGTCTTCCTGTACCCG 58.106 52.381 0.00 0.00 0.00 5.28
3124 6693 0.886563 AAGCCATCTGCAGAAACAGC 59.113 50.000 22.50 19.63 44.83 4.40
3921 7491 7.040062 TCACAATCAATAACAAACCCTACTTGG 60.040 37.037 0.00 0.00 0.00 3.61
4108 7678 1.546476 AGGAAGTTACACTGAGCGGAG 59.454 52.381 0.00 0.00 0.00 4.63
4148 7718 3.848917 GCTTGATGAATCTGAAGATGCGC 60.849 47.826 0.00 0.00 32.57 6.09
4546 8120 3.019564 AGGTGAAATACTTCTGCCATGC 58.980 45.455 0.00 0.00 32.93 4.06
4846 8420 3.106827 TGGAGCTACATGAATGGACAGA 58.893 45.455 0.00 0.00 0.00 3.41
5075 8667 8.141268 GGAGGAAATGTGACAACTTCAAATAAA 58.859 33.333 11.38 0.00 35.39 1.40
5100 8692 8.685427 TGATTTAATCACTCAACCAACATATGG 58.315 33.333 7.80 0.00 44.24 2.74
5196 8788 7.906199 AAGGCAGAGTATAACAGTTCTAGAT 57.094 36.000 0.00 0.00 0.00 1.98
5204 8796 5.419542 TGCAACTAAGGCAGAGTATAACAG 58.580 41.667 0.00 0.00 36.11 3.16
5240 8854 0.757188 TGCGGGGTTGTTTGGTCAAT 60.757 50.000 0.00 0.00 0.00 2.57
5283 8897 8.374743 TGCATATTCCATAATTAGACTAGCACA 58.625 33.333 0.00 0.00 0.00 4.57
5370 10415 6.658816 TGTCAATATTCTGTGGCAGTACAAAT 59.341 34.615 0.00 0.00 32.61 2.32
5436 10481 6.788930 CGGTTCTTTAAACTTCAATGTCGTAC 59.211 38.462 0.00 0.00 0.00 3.67
5587 10633 9.491406 TCCATATACAAGGTTGGTTACTTACTA 57.509 33.333 0.00 0.00 0.00 1.82
5588 10634 8.383374 TCCATATACAAGGTTGGTTACTTACT 57.617 34.615 0.00 0.00 0.00 2.24
5589 10635 9.052759 CATCCATATACAAGGTTGGTTACTTAC 57.947 37.037 0.00 0.00 0.00 2.34
5735 10781 4.513692 ACTTACTTTATTGCTTGTGCGACA 59.486 37.500 0.00 0.00 43.34 4.35
5824 10870 5.837437 TGTAATGCCAACAGTTAACAAAGG 58.163 37.500 8.61 5.31 0.00 3.11
5825 10871 5.920273 CCTGTAATGCCAACAGTTAACAAAG 59.080 40.000 8.61 0.00 42.30 2.77
5966 11012 0.108329 CCGATGCTTTAGGGTGTCGT 60.108 55.000 0.00 0.00 0.00 4.34
5984 11030 3.499737 CGCGAGAACCACATGGCC 61.500 66.667 0.00 0.00 39.32 5.36
6002 11048 2.677979 GGCCTCGCCGTTCAAGAAC 61.678 63.158 0.00 2.89 39.62 3.01
6050 11097 1.412079 AAGCACCTTGGTGAATGCAA 58.588 45.000 22.52 0.00 40.63 4.08
6051 11098 2.284754 TAAGCACCTTGGTGAATGCA 57.715 45.000 22.52 0.00 40.63 3.96
6106 11153 4.995124 ACAAAGATACTGCGAATACGACT 58.005 39.130 0.00 0.00 42.66 4.18
6107 11154 5.108330 GCTACAAAGATACTGCGAATACGAC 60.108 44.000 0.00 0.00 42.66 4.34
6115 11168 2.544685 AGCTGCTACAAAGATACTGCG 58.455 47.619 0.00 0.00 0.00 5.18
6119 11172 9.959749 GGATAGATATAGCTGCTACAAAGATAC 57.040 37.037 12.26 0.73 0.00 2.24
6126 11179 7.378966 GTTTGTGGATAGATATAGCTGCTACA 58.621 38.462 12.26 0.00 0.00 2.74
6134 11187 7.155328 GGTGTCAGGTTTGTGGATAGATATAG 58.845 42.308 0.00 0.00 0.00 1.31
6192 11245 5.946298 TGCTGACTCTTTAAGCATTCATTG 58.054 37.500 0.00 0.00 41.83 2.82
6222 11275 0.458260 TGCGAGTTATTAGCAGCGGA 59.542 50.000 0.00 0.00 35.81 5.54
6231 11316 7.254117 CGTTCAGATTAGATTGTGCGAGTTATT 60.254 37.037 0.00 0.00 0.00 1.40
6257 11342 3.461061 TGTAGCAACAGAGATAGCATGC 58.539 45.455 10.51 10.51 0.00 4.06
6303 11388 4.327357 GTGTATGAATCACAACTCACGGAG 59.673 45.833 0.00 0.03 36.05 4.63
6324 11409 1.271871 TGGTCATTGCTTACTGGGGTG 60.272 52.381 0.00 0.00 0.00 4.61
6340 11425 3.641436 AGAAACAAACTTCCCCATTGGTC 59.359 43.478 1.20 0.00 34.77 4.02
6437 11530 2.418368 TGTGGCAGACTCAAAGTTGT 57.582 45.000 0.00 0.00 0.00 3.32
6449 11542 4.400529 TGGTGTATACTGTATGTGGCAG 57.599 45.455 10.51 0.00 39.67 4.85
6450 11543 4.468153 TCTTGGTGTATACTGTATGTGGCA 59.532 41.667 10.51 2.20 0.00 4.92
6453 11546 6.096987 ACCTCTCTTGGTGTATACTGTATGTG 59.903 42.308 10.51 0.00 39.17 3.21
6493 11586 0.038890 TTCGGAATGTCCCCAATGCA 59.961 50.000 0.00 0.00 31.13 3.96
6520 11613 2.264124 GTGAGAGCCACGTACAGGA 58.736 57.895 5.57 0.00 35.86 3.86
6692 11789 1.659644 GACTAATCGCGGCCCGTAC 60.660 63.158 6.13 0.00 38.35 3.67
6716 11813 6.818142 CCCCTTAAACATCCATTTCAACAATC 59.182 38.462 0.00 0.00 0.00 2.67
6723 11820 3.103742 TGGCCCCTTAAACATCCATTTC 58.896 45.455 0.00 0.00 0.00 2.17
6891 11997 3.879892 AGAAGAGAAACACACTTTCTGGC 59.120 43.478 0.07 0.00 38.73 4.85
6901 12007 6.091718 AGAACTCCAGTAGAAGAGAAACAC 57.908 41.667 0.00 0.00 34.13 3.32
6906 12012 7.233553 TCAAATGAAGAACTCCAGTAGAAGAGA 59.766 37.037 0.00 0.00 34.13 3.10
6909 12015 6.593382 CCTCAAATGAAGAACTCCAGTAGAAG 59.407 42.308 0.00 0.00 0.00 2.85
6914 12020 4.982241 TCCTCAAATGAAGAACTCCAGT 57.018 40.909 0.00 0.00 0.00 4.00
6930 12036 1.270826 CTGTCAGAAGCGAGTTCCTCA 59.729 52.381 0.00 0.00 35.51 3.86
6952 12061 1.073923 AGTGGTTTTGGCTGGGTCTAG 59.926 52.381 0.00 0.00 0.00 2.43
6976 12085 8.848474 TTCAACCAATCAACCAAAGTTAAAAA 57.152 26.923 0.00 0.00 33.27 1.94
6977 12086 7.550906 CCTTCAACCAATCAACCAAAGTTAAAA 59.449 33.333 0.00 0.00 33.27 1.52
6978 12087 7.044798 CCTTCAACCAATCAACCAAAGTTAAA 58.955 34.615 0.00 0.00 33.27 1.52
6979 12088 6.407525 CCCTTCAACCAATCAACCAAAGTTAA 60.408 38.462 0.00 0.00 33.27 2.01
6980 12089 5.069781 CCCTTCAACCAATCAACCAAAGTTA 59.930 40.000 0.00 0.00 33.27 2.24
6998 12107 2.115052 ATGCCACGTTGCCCTTCA 59.885 55.556 9.38 0.00 0.00 3.02
7008 12117 1.725641 ACTGTATGTGACATGCCACG 58.274 50.000 8.61 1.11 39.80 4.94
7012 12121 9.708222 CTCTTTATTTTACTGTATGTGACATGC 57.292 33.333 8.61 7.61 37.45 4.06
7146 12295 0.108089 GGCACCATCATTGCATTGCA 60.108 50.000 7.38 7.38 42.12 4.08
7147 12296 2.685364 GGCACCATCATTGCATTGC 58.315 52.632 0.46 0.46 42.12 3.56
7387 12540 2.452813 CGGCGATGGGTGAAAGACG 61.453 63.158 0.00 0.00 0.00 4.18
7462 12615 1.293498 GCCTCGCCACTCTTCTTCA 59.707 57.895 0.00 0.00 0.00 3.02
7465 12618 2.055042 ATCGCCTCGCCACTCTTCT 61.055 57.895 0.00 0.00 0.00 2.85
7493 12646 2.029221 GGAGAACCTATCGCCGCC 59.971 66.667 0.00 0.00 38.30 6.13
7497 12650 1.550976 CCCCTATGGAGAACCTATCGC 59.449 57.143 0.00 0.00 35.39 4.58
7499 12652 3.858135 TCACCCCTATGGAGAACCTATC 58.142 50.000 0.00 0.00 38.00 2.08
7500 12653 4.510303 ATCACCCCTATGGAGAACCTAT 57.490 45.455 0.00 0.00 37.27 2.57
7501 12654 5.427857 TTATCACCCCTATGGAGAACCTA 57.572 43.478 0.00 0.00 37.27 3.08
7502 12655 2.897823 ATCACCCCTATGGAGAACCT 57.102 50.000 0.00 0.00 37.27 3.50
7504 12657 5.632034 AGTTTATCACCCCTATGGAGAAC 57.368 43.478 0.00 0.00 37.27 3.01
7505 12658 6.674861 TGTTAGTTTATCACCCCTATGGAGAA 59.325 38.462 0.00 0.00 37.27 2.87
7506 12659 6.206787 TGTTAGTTTATCACCCCTATGGAGA 58.793 40.000 0.00 0.00 38.16 3.71
7507 12660 6.494666 TGTTAGTTTATCACCCCTATGGAG 57.505 41.667 0.00 0.00 38.00 3.86
7508 12661 6.126594 CCTTGTTAGTTTATCACCCCTATGGA 60.127 42.308 0.00 0.00 38.00 3.41
7509 12662 6.062095 CCTTGTTAGTTTATCACCCCTATGG 58.938 44.000 0.00 0.00 41.37 2.74
7510 12663 6.062095 CCCTTGTTAGTTTATCACCCCTATG 58.938 44.000 0.00 0.00 0.00 2.23
7511 12664 5.398695 GCCCTTGTTAGTTTATCACCCCTAT 60.399 44.000 0.00 0.00 0.00 2.57
7512 12665 4.080186 GCCCTTGTTAGTTTATCACCCCTA 60.080 45.833 0.00 0.00 0.00 3.53
7513 12666 3.308904 GCCCTTGTTAGTTTATCACCCCT 60.309 47.826 0.00 0.00 0.00 4.79
7514 12667 3.021695 GCCCTTGTTAGTTTATCACCCC 58.978 50.000 0.00 0.00 0.00 4.95
7515 12668 3.692690 TGCCCTTGTTAGTTTATCACCC 58.307 45.455 0.00 0.00 0.00 4.61
7516 12669 3.694566 CCTGCCCTTGTTAGTTTATCACC 59.305 47.826 0.00 0.00 0.00 4.02
7517 12670 4.332828 ACCTGCCCTTGTTAGTTTATCAC 58.667 43.478 0.00 0.00 0.00 3.06
7518 12671 4.650972 ACCTGCCCTTGTTAGTTTATCA 57.349 40.909 0.00 0.00 0.00 2.15
7519 12672 5.007682 TCAACCTGCCCTTGTTAGTTTATC 58.992 41.667 0.00 0.00 0.00 1.75
7520 12673 4.993028 TCAACCTGCCCTTGTTAGTTTAT 58.007 39.130 0.00 0.00 0.00 1.40
7521 12674 4.440826 TCAACCTGCCCTTGTTAGTTTA 57.559 40.909 0.00 0.00 0.00 2.01
7522 12675 3.306472 TCAACCTGCCCTTGTTAGTTT 57.694 42.857 0.00 0.00 0.00 2.66
7523 12676 3.525800 ATCAACCTGCCCTTGTTAGTT 57.474 42.857 0.00 0.00 0.00 2.24
7524 12677 3.329520 TGTATCAACCTGCCCTTGTTAGT 59.670 43.478 0.00 0.00 0.00 2.24
7525 12678 3.950397 TGTATCAACCTGCCCTTGTTAG 58.050 45.455 0.00 0.00 0.00 2.34
7526 12679 4.374689 TTGTATCAACCTGCCCTTGTTA 57.625 40.909 0.00 0.00 0.00 2.41
7527 12680 2.969821 TGTATCAACCTGCCCTTGTT 57.030 45.000 0.00 0.00 0.00 2.83
7528 12681 2.969821 TTGTATCAACCTGCCCTTGT 57.030 45.000 0.00 0.00 0.00 3.16
7529 12682 4.202202 TGTTTTTGTATCAACCTGCCCTTG 60.202 41.667 0.00 0.00 0.00 3.61
7530 12683 3.964031 TGTTTTTGTATCAACCTGCCCTT 59.036 39.130 0.00 0.00 0.00 3.95
7531 12684 3.571590 TGTTTTTGTATCAACCTGCCCT 58.428 40.909 0.00 0.00 0.00 5.19
7532 12685 4.244862 CATGTTTTTGTATCAACCTGCCC 58.755 43.478 0.00 0.00 0.00 5.36
7533 12686 4.685628 CACATGTTTTTGTATCAACCTGCC 59.314 41.667 0.00 0.00 0.00 4.85
7534 12687 4.150451 GCACATGTTTTTGTATCAACCTGC 59.850 41.667 0.00 0.00 0.00 4.85
7535 12688 4.685628 GGCACATGTTTTTGTATCAACCTG 59.314 41.667 0.00 0.00 0.00 4.00
7536 12689 4.343526 TGGCACATGTTTTTGTATCAACCT 59.656 37.500 0.00 0.00 0.00 3.50
7537 12690 4.626042 TGGCACATGTTTTTGTATCAACC 58.374 39.130 0.00 0.00 0.00 3.77
7551 12704 3.968227 ACAGCAACAGTGATGGCACATG 61.968 50.000 0.00 0.00 45.71 3.21
7557 12710 1.002888 AGAGGACAGCAACAGTGATGG 59.997 52.381 0.00 0.00 45.71 3.51
7558 12711 2.344950 GAGAGGACAGCAACAGTGATG 58.655 52.381 0.00 0.00 46.85 3.07
7559 12712 1.277557 GGAGAGGACAGCAACAGTGAT 59.722 52.381 0.00 0.00 0.00 3.06
7564 12727 3.740115 GTTTAAGGAGAGGACAGCAACA 58.260 45.455 0.00 0.00 0.00 3.33
7565 12728 2.737252 CGTTTAAGGAGAGGACAGCAAC 59.263 50.000 0.00 0.00 0.00 4.17
7567 12730 1.337823 GCGTTTAAGGAGAGGACAGCA 60.338 52.381 0.00 0.00 0.00 4.41
7572 12735 0.611714 GTGGGCGTTTAAGGAGAGGA 59.388 55.000 0.00 0.00 0.00 3.71
7601 12764 0.038166 TGGGGAACACATCTGGCTTC 59.962 55.000 0.00 0.00 0.00 3.86
7602 12765 0.482446 TTGGGGAACACATCTGGCTT 59.518 50.000 0.00 0.00 0.00 4.35
7610 12773 1.075836 CGGGGATTTGGGGAACACA 59.924 57.895 0.00 0.00 0.00 3.72
7632 12795 3.768922 AGAGCGCAGGCAGGAGAC 61.769 66.667 11.47 0.00 43.41 3.36
7633 12796 3.767806 CAGAGCGCAGGCAGGAGA 61.768 66.667 11.47 0.00 43.41 3.71
7656 12819 5.431765 AGAGGAATAAATCGTGTCAATGCT 58.568 37.500 0.00 0.00 0.00 3.79
7661 12824 6.096846 TCTGATGAGAGGAATAAATCGTGTCA 59.903 38.462 1.37 1.37 46.24 3.58
7663 12826 6.471233 TCTGATGAGAGGAATAAATCGTGT 57.529 37.500 0.00 0.00 0.00 4.49
7666 12829 7.205992 TGAGTTCTGATGAGAGGAATAAATCG 58.794 38.462 0.00 0.00 0.00 3.34
7669 12832 7.724490 TCTGAGTTCTGATGAGAGGAATAAA 57.276 36.000 0.00 0.00 0.00 1.40
7670 12833 7.617329 TCTTCTGAGTTCTGATGAGAGGAATAA 59.383 37.037 0.00 0.00 0.00 1.40
7676 12839 5.045215 GCATCTTCTGAGTTCTGATGAGAG 58.955 45.833 0.00 6.71 37.33 3.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.