Multiple sequence alignment - TraesCS3D01G391600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G391600 chr3D 100.000 5752 0 0 1 5752 506710794 506716545 0.000000e+00 10623.0
1 TraesCS3D01G391600 chr3D 96.013 953 34 3 4801 5752 162809853 162808904 0.000000e+00 1546.0
2 TraesCS3D01G391600 chr3D 83.333 360 47 11 2068 2422 323693443 323693794 2.590000e-83 320.0
3 TraesCS3D01G391600 chr3D 74.852 676 140 26 4081 4753 323698485 323699133 4.390000e-71 279.0
4 TraesCS3D01G391600 chr3D 95.349 43 1 1 413 455 66408477 66408518 3.720000e-07 67.6
5 TraesCS3D01G391600 chr3D 92.683 41 3 0 413 453 266631406 266631366 6.220000e-05 60.2
6 TraesCS3D01G391600 chr3B 93.969 2454 101 15 456 2871 668887703 668890147 0.000000e+00 3668.0
7 TraesCS3D01G391600 chr3B 91.336 1108 56 17 3693 4779 668892179 668893267 0.000000e+00 1478.0
8 TraesCS3D01G391600 chr3B 90.833 480 22 7 3146 3616 668891434 668891900 1.760000e-174 623.0
9 TraesCS3D01G391600 chr3B 88.312 462 42 3 1 450 668887203 668887664 1.410000e-150 544.0
10 TraesCS3D01G391600 chr3B 84.404 327 44 5 2101 2422 395384291 395383967 1.200000e-81 315.0
11 TraesCS3D01G391600 chr3B 74.620 658 141 18 4081 4737 395380566 395379934 3.420000e-67 267.0
12 TraesCS3D01G391600 chr3B 89.375 160 9 4 2884 3043 668890238 668890389 1.640000e-45 195.0
13 TraesCS3D01G391600 chr3B 96.875 32 1 0 424 455 715062368 715062399 3.000000e-03 54.7
14 TraesCS3D01G391600 chr3A 92.393 2537 109 18 564 3043 644935081 644937590 0.000000e+00 3539.0
15 TraesCS3D01G391600 chr3A 91.557 1066 53 17 3751 4794 644939420 644940470 0.000000e+00 1435.0
16 TraesCS3D01G391600 chr3A 90.441 272 13 6 3354 3618 644939162 644939427 4.270000e-91 346.0
17 TraesCS3D01G391600 chr3A 85.015 327 42 5 2101 2422 398885003 398884679 5.560000e-85 326.0
18 TraesCS3D01G391600 chr3A 85.965 114 9 2 3185 3291 644938817 644938930 1.310000e-21 115.0
19 TraesCS3D01G391600 chr3A 100.000 28 0 0 425 452 436723138 436723111 1.000000e-02 52.8
20 TraesCS3D01G391600 chr7D 96.134 957 33 4 4797 5752 383607943 383606990 0.000000e+00 1559.0
21 TraesCS3D01G391600 chr7D 96.029 957 34 4 4797 5752 383615462 383614509 0.000000e+00 1554.0
22 TraesCS3D01G391600 chr7D 95.921 956 35 4 4798 5752 148053640 148054592 0.000000e+00 1546.0
23 TraesCS3D01G391600 chr7D 95.816 956 38 2 4798 5752 359382426 359383380 0.000000e+00 1543.0
24 TraesCS3D01G391600 chr7D 83.425 181 30 0 2 182 53713210 53713030 9.910000e-38 169.0
25 TraesCS3D01G391600 chr4D 96.126 955 36 1 4798 5752 285884156 285883203 0.000000e+00 1557.0
26 TraesCS3D01G391600 chr4D 95.921 956 36 3 4798 5752 37156677 37157630 0.000000e+00 1546.0
27 TraesCS3D01G391600 chr4D 96.013 953 34 4 4801 5752 225514741 225513792 0.000000e+00 1546.0
28 TraesCS3D01G391600 chr4D 81.560 141 23 3 314 451 428731178 428731038 4.710000e-21 113.0
29 TraesCS3D01G391600 chr2D 95.921 956 37 2 4798 5752 188704812 188705766 0.000000e+00 1548.0
30 TraesCS3D01G391600 chr2D 85.135 74 11 0 4452 4525 56106854 56106927 6.180000e-10 76.8
31 TraesCS3D01G391600 chr5A 83.056 360 50 8 2069 2424 21433460 21433108 3.350000e-82 316.0
32 TraesCS3D01G391600 chr5B 84.365 307 46 2 2119 2424 24115406 24115101 3.370000e-77 300.0
33 TraesCS3D01G391600 chr5B 79.661 118 16 4 4455 4571 243361518 243361628 1.720000e-10 78.7
34 TraesCS3D01G391600 chr5D 83.133 332 44 7 2101 2423 33025569 33025241 5.640000e-75 292.0
35 TraesCS3D01G391600 chr5D 80.508 118 15 4 4455 4571 220462830 220462940 3.690000e-12 84.2
36 TraesCS3D01G391600 chr6B 76.739 460 71 25 1 433 467910789 467911239 2.090000e-54 224.0
37 TraesCS3D01G391600 chr4B 78.161 261 45 8 7 255 671133119 671133379 7.720000e-34 156.0
38 TraesCS3D01G391600 chr2B 85.135 74 11 0 4452 4525 88841307 88841380 6.180000e-10 76.8
39 TraesCS3D01G391600 chr2B 91.111 45 4 0 409 453 445261260 445261216 1.730000e-05 62.1
40 TraesCS3D01G391600 chr2A 85.135 74 11 0 4452 4525 57549287 57549360 6.180000e-10 76.8
41 TraesCS3D01G391600 chr6D 77.692 130 24 5 327 453 23102268 23102141 2.220000e-09 75.0
42 TraesCS3D01G391600 chr7A 83.099 71 10 2 386 455 68769860 68769929 4.810000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G391600 chr3D 506710794 506716545 5751 False 10623.00 10623 100.000 1 5752 1 chr3D.!!$F4 5751
1 TraesCS3D01G391600 chr3D 162808904 162809853 949 True 1546.00 1546 96.013 4801 5752 1 chr3D.!!$R1 951
2 TraesCS3D01G391600 chr3D 323698485 323699133 648 False 279.00 279 74.852 4081 4753 1 chr3D.!!$F3 672
3 TraesCS3D01G391600 chr3B 668887203 668893267 6064 False 1301.60 3668 90.765 1 4779 5 chr3B.!!$F2 4778
4 TraesCS3D01G391600 chr3B 395379934 395384291 4357 True 291.00 315 79.512 2101 4737 2 chr3B.!!$R1 2636
5 TraesCS3D01G391600 chr3A 644935081 644940470 5389 False 1358.75 3539 90.089 564 4794 4 chr3A.!!$F1 4230
6 TraesCS3D01G391600 chr7D 383606990 383607943 953 True 1559.00 1559 96.134 4797 5752 1 chr7D.!!$R2 955
7 TraesCS3D01G391600 chr7D 383614509 383615462 953 True 1554.00 1554 96.029 4797 5752 1 chr7D.!!$R3 955
8 TraesCS3D01G391600 chr7D 148053640 148054592 952 False 1546.00 1546 95.921 4798 5752 1 chr7D.!!$F1 954
9 TraesCS3D01G391600 chr7D 359382426 359383380 954 False 1543.00 1543 95.816 4798 5752 1 chr7D.!!$F2 954
10 TraesCS3D01G391600 chr4D 285883203 285884156 953 True 1557.00 1557 96.126 4798 5752 1 chr4D.!!$R2 954
11 TraesCS3D01G391600 chr4D 37156677 37157630 953 False 1546.00 1546 95.921 4798 5752 1 chr4D.!!$F1 954
12 TraesCS3D01G391600 chr4D 225513792 225514741 949 True 1546.00 1546 96.013 4801 5752 1 chr4D.!!$R1 951
13 TraesCS3D01G391600 chr2D 188704812 188705766 954 False 1548.00 1548 95.921 4798 5752 1 chr2D.!!$F2 954

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
492 538 0.107165 GACCACCCCCTCTGTATTGC 60.107 60.000 0.00 0.00 0.00 3.56 F
888 947 1.698532 CTCCAGATCCTATGCCAAGCT 59.301 52.381 0.00 0.00 0.00 3.74 F
2070 2140 0.249489 CAAAGGAGATACCCTCGGCG 60.249 60.000 0.00 0.00 42.89 6.46 F
2644 2842 0.109412 CCTGGTTCCAGTCGTACGAC 60.109 60.000 35.26 35.26 44.86 4.34 F
3637 6217 0.472898 GGGTTCGGAAATAGAGGGGG 59.527 60.000 0.00 0.00 0.00 5.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1724 1794 0.459585 GTTGCCGGCGAATGACTCTA 60.460 55.0 20.60 0.0 0.00 2.43 R
2610 2808 0.527565 CCAGGAAAAATGCCGGACAG 59.472 55.0 5.05 0.0 0.00 3.51 R
4005 6800 0.453950 GCATGCAGAGTGAAACAGCG 60.454 55.0 14.21 0.0 41.43 5.18 R
4472 8796 0.338814 ACTCCTCCCTTACCACCGAT 59.661 55.0 0.00 0.0 0.00 4.18 R
5038 9366 0.541392 TGTTGGGACGATCAGGGATG 59.459 55.0 0.00 0.0 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 1.350193 GTGAGTGCGATGTGAACGAT 58.650 50.000 0.00 0.00 0.00 3.73
89 90 2.514592 ATCCAGGCCATGCGAACG 60.515 61.111 5.01 0.00 0.00 3.95
90 91 4.776322 TCCAGGCCATGCGAACGG 62.776 66.667 5.01 0.00 0.00 4.44
143 144 2.614057 CGAATTTGATTCCTCGGGAAGG 59.386 50.000 10.51 0.00 45.48 3.46
147 148 0.613260 TGATTCCTCGGGAAGGTGTG 59.387 55.000 10.51 0.00 45.48 3.82
221 232 2.813172 ACATCACGCAACATCAATGTCA 59.187 40.909 0.00 0.00 40.80 3.58
226 237 0.523072 GCAACATCAATGTCAGCCGT 59.477 50.000 8.52 0.00 40.80 5.68
235 246 1.230635 ATGTCAGCCGTTGTGTGCTC 61.231 55.000 0.00 0.00 35.12 4.26
240 251 2.281070 CCGTTGTGTGCTCTGGCT 60.281 61.111 0.00 0.00 39.59 4.75
242 253 2.641559 GTTGTGTGCTCTGGCTGC 59.358 61.111 0.00 0.00 39.59 5.25
273 284 0.512518 CGCGTGCATCAGACAGAAAA 59.487 50.000 0.00 0.00 0.00 2.29
285 296 0.319641 ACAGAAAACGCGGGAGAGAC 60.320 55.000 12.47 0.00 0.00 3.36
301 312 2.701951 AGAGACGGGTGAGGTTGTTTTA 59.298 45.455 0.00 0.00 0.00 1.52
306 317 1.548719 GGGTGAGGTTGTTTTATGGGC 59.451 52.381 0.00 0.00 0.00 5.36
310 321 1.824852 GAGGTTGTTTTATGGGCCAGG 59.175 52.381 13.78 0.00 0.00 4.45
321 332 1.218316 GGGCCAGGTTAGTCAGACG 59.782 63.158 4.39 0.00 0.00 4.18
340 351 4.065281 GGACGTGGGAGTGGTCCG 62.065 72.222 0.00 0.00 45.05 4.79
408 421 3.110178 GTTCGAACCACCGAGCGG 61.110 66.667 17.68 7.48 39.90 5.52
416 429 1.048601 ACCACCGAGCGGATTGATAT 58.951 50.000 16.83 0.00 38.96 1.63
423 436 3.428180 CCGAGCGGATTGATATAGGACTG 60.428 52.174 2.00 0.00 37.50 3.51
424 437 3.516615 GAGCGGATTGATATAGGACTGC 58.483 50.000 0.00 0.00 0.00 4.40
437 450 1.202758 AGGACTGCGTTGGATGACAAA 60.203 47.619 0.00 0.00 41.58 2.83
450 463 0.810823 TGACAAAACACGTCCGGACC 60.811 55.000 28.52 11.59 32.15 4.46
452 465 2.968697 AAAACACGTCCGGACCGC 60.969 61.111 28.52 4.56 0.00 5.68
453 466 3.736732 AAAACACGTCCGGACCGCA 62.737 57.895 28.52 0.00 0.00 5.69
456 469 3.740397 CACGTCCGGACCGCACTA 61.740 66.667 28.52 0.00 0.00 2.74
457 470 3.437795 ACGTCCGGACCGCACTAG 61.438 66.667 28.52 14.88 0.00 2.57
458 471 4.189188 CGTCCGGACCGCACTAGG 62.189 72.222 28.52 8.24 37.30 3.02
459 472 2.753043 GTCCGGACCGCACTAGGA 60.753 66.667 24.75 0.00 34.73 2.94
460 473 2.036098 TCCGGACCGCACTAGGAA 59.964 61.111 8.86 0.00 34.73 3.36
461 474 1.380785 TCCGGACCGCACTAGGAAT 60.381 57.895 8.86 0.00 34.73 3.01
462 475 1.227263 CCGGACCGCACTAGGAATG 60.227 63.158 8.86 0.00 34.73 2.67
463 476 1.883084 CGGACCGCACTAGGAATGC 60.883 63.158 0.00 0.00 39.81 3.56
472 518 1.398390 CACTAGGAATGCCTTTGCGTC 59.602 52.381 0.00 0.00 43.90 5.19
492 538 0.107165 GACCACCCCCTCTGTATTGC 60.107 60.000 0.00 0.00 0.00 3.56
507 553 2.849880 ATTGCCCGTTTTCATCGATG 57.150 45.000 19.61 19.61 0.00 3.84
508 554 1.814793 TTGCCCGTTTTCATCGATGA 58.185 45.000 23.99 23.99 34.44 2.92
509 555 2.036958 TGCCCGTTTTCATCGATGAT 57.963 45.000 27.75 0.00 36.56 2.45
510 556 3.186702 TGCCCGTTTTCATCGATGATA 57.813 42.857 27.75 20.53 36.56 2.15
603 656 4.322349 CCGTGGGCAAAATAAGATGGAAAA 60.322 41.667 0.00 0.00 0.00 2.29
644 697 2.831366 TACGCGGCTCACTCGATCC 61.831 63.158 12.47 0.00 0.00 3.36
677 730 3.066900 ACATGCGTAGTAGAGTGGACATC 59.933 47.826 0.00 0.00 0.00 3.06
684 737 2.433604 AGTAGAGTGGACATCATGCCAG 59.566 50.000 1.41 0.00 34.22 4.85
686 739 2.125233 AGAGTGGACATCATGCCAGAT 58.875 47.619 1.41 0.00 34.22 2.90
888 947 1.698532 CTCCAGATCCTATGCCAAGCT 59.301 52.381 0.00 0.00 0.00 3.74
899 958 4.326255 CCAAGCTAGGCAACCCAG 57.674 61.111 0.00 0.00 37.17 4.45
901 971 2.045926 AAGCTAGGCAACCCAGCG 60.046 61.111 0.00 0.00 39.06 5.18
999 1069 1.748122 CCAAGCAAGCGCCTCTCAT 60.748 57.895 2.29 0.00 39.83 2.90
1417 1487 4.750695 TCTTCGGCCCCATCCCCA 62.751 66.667 0.00 0.00 0.00 4.96
1418 1488 3.738481 CTTCGGCCCCATCCCCAA 61.738 66.667 0.00 0.00 0.00 4.12
1587 1657 2.442272 GACGGCCTGAGGGAGCTA 60.442 66.667 0.00 0.00 33.58 3.32
1720 1790 2.352032 CCCTCCCTCGCGAACTTCT 61.352 63.158 11.33 0.00 0.00 2.85
2070 2140 0.249489 CAAAGGAGATACCCTCGGCG 60.249 60.000 0.00 0.00 42.89 6.46
2385 2458 2.202492 CTCGTCGCCGACTTCCTG 60.202 66.667 16.07 0.00 38.40 3.86
2444 2517 1.618345 CCCTGCTCTATCCGGCTATCT 60.618 57.143 0.00 0.00 0.00 1.98
2506 2596 1.292992 TACTGCATTGATCGCTGCTG 58.707 50.000 18.46 18.46 41.45 4.41
2551 2644 1.198867 CCGTGGTTTGCATCGATCAAA 59.801 47.619 14.83 14.83 0.00 2.69
2554 2647 3.244976 GTGGTTTGCATCGATCAAAAGG 58.755 45.455 18.32 0.34 35.49 3.11
2589 2682 0.669077 CTCCGGTCGATTACTCAGGG 59.331 60.000 0.00 0.00 0.00 4.45
2590 2683 0.754217 TCCGGTCGATTACTCAGGGG 60.754 60.000 0.00 0.00 0.00 4.79
2644 2842 0.109412 CCTGGTTCCAGTCGTACGAC 60.109 60.000 35.26 35.26 44.86 4.34
2742 2940 4.342772 CAAATAATTCGAAAGGGACGCAG 58.657 43.478 0.00 0.00 0.00 5.18
2745 2943 0.608640 ATTCGAAAGGGACGCAGAGT 59.391 50.000 0.00 0.00 0.00 3.24
2765 2963 1.883084 GAACGTATGGCTCGGCAGG 60.883 63.158 0.00 0.00 0.00 4.85
2787 2985 4.848685 GGTTATCCGTGATGGCGT 57.151 55.556 0.00 0.00 37.80 5.68
2850 3050 7.172703 CCGGGATTAGCGGGATATTTATTTATC 59.827 40.741 0.00 0.00 0.00 1.75
2871 3071 5.930837 TCAAACCTGGTCAAACTTTGAAT 57.069 34.783 5.76 0.00 42.15 2.57
2912 3192 5.379732 TTTCTTCAACCTGTTTTCAACGT 57.620 34.783 0.00 0.00 0.00 3.99
2964 3244 8.020819 TGTTTGCTAGCATACAAATTCAAGTAC 58.979 33.333 30.82 6.79 38.01 2.73
2973 3253 4.855531 ACAAATTCAAGTACGCCAAAGTC 58.144 39.130 0.00 0.00 0.00 3.01
2976 3256 2.922740 TCAAGTACGCCAAAGTCCTT 57.077 45.000 0.00 0.00 0.00 3.36
2977 3257 2.762745 TCAAGTACGCCAAAGTCCTTC 58.237 47.619 0.00 0.00 0.00 3.46
2978 3258 1.804748 CAAGTACGCCAAAGTCCTTCC 59.195 52.381 0.00 0.00 0.00 3.46
2979 3259 1.349067 AGTACGCCAAAGTCCTTCCT 58.651 50.000 0.00 0.00 0.00 3.36
2980 3260 2.532843 AGTACGCCAAAGTCCTTCCTA 58.467 47.619 0.00 0.00 0.00 2.94
2981 3261 2.496470 AGTACGCCAAAGTCCTTCCTAG 59.504 50.000 0.00 0.00 0.00 3.02
2982 3262 1.640917 ACGCCAAAGTCCTTCCTAGA 58.359 50.000 0.00 0.00 0.00 2.43
2983 3263 1.275573 ACGCCAAAGTCCTTCCTAGAC 59.724 52.381 0.00 0.00 34.31 2.59
3012 3292 2.288640 GGAGCATGTATGTACCGGGTAC 60.289 54.545 26.79 26.79 39.24 3.34
3021 3301 1.006281 TGTACCGGGTACAGATCCACT 59.994 52.381 31.03 0.00 42.99 4.00
3043 3323 9.801873 CCACTTTCAAAACTTTTTAGAGATTCA 57.198 29.630 0.00 0.00 0.00 2.57
3047 3327 8.856490 TTCAAAACTTTTTAGAGATTCAGTGC 57.144 30.769 0.00 0.00 0.00 4.40
3049 3329 6.959639 AAACTTTTTAGAGATTCAGTGCCA 57.040 33.333 0.00 0.00 0.00 4.92
3052 3332 8.635765 AACTTTTTAGAGATTCAGTGCCATTA 57.364 30.769 0.00 0.00 0.00 1.90
3053 3333 8.273780 ACTTTTTAGAGATTCAGTGCCATTAG 57.726 34.615 0.00 0.00 0.00 1.73
3054 3334 7.885399 ACTTTTTAGAGATTCAGTGCCATTAGT 59.115 33.333 0.00 0.00 0.00 2.24
3055 3335 8.635765 TTTTTAGAGATTCAGTGCCATTAGTT 57.364 30.769 0.00 0.00 0.00 2.24
3056 3336 9.733556 TTTTTAGAGATTCAGTGCCATTAGTTA 57.266 29.630 0.00 0.00 0.00 2.24
3057 3337 8.718102 TTTAGAGATTCAGTGCCATTAGTTAC 57.282 34.615 0.00 0.00 0.00 2.50
3058 3338 6.552445 AGAGATTCAGTGCCATTAGTTACT 57.448 37.500 0.00 0.00 0.00 2.24
3059 3339 6.951971 AGAGATTCAGTGCCATTAGTTACTT 58.048 36.000 0.00 0.00 0.00 2.24
3060 3340 7.044798 AGAGATTCAGTGCCATTAGTTACTTC 58.955 38.462 0.00 0.00 0.00 3.01
3061 3341 6.711277 AGATTCAGTGCCATTAGTTACTTCA 58.289 36.000 0.00 0.00 0.00 3.02
3062 3342 7.341805 AGATTCAGTGCCATTAGTTACTTCAT 58.658 34.615 0.00 0.00 0.00 2.57
3063 3343 7.831193 AGATTCAGTGCCATTAGTTACTTCATT 59.169 33.333 0.00 0.00 0.00 2.57
3064 3344 6.741992 TCAGTGCCATTAGTTACTTCATTG 57.258 37.500 0.00 0.00 0.00 2.82
3065 3345 6.472016 TCAGTGCCATTAGTTACTTCATTGA 58.528 36.000 0.00 0.00 0.00 2.57
3066 3346 7.112122 TCAGTGCCATTAGTTACTTCATTGAT 58.888 34.615 0.00 0.00 0.00 2.57
3067 3347 7.280876 TCAGTGCCATTAGTTACTTCATTGATC 59.719 37.037 0.00 0.00 0.00 2.92
3068 3348 7.066163 CAGTGCCATTAGTTACTTCATTGATCA 59.934 37.037 0.00 0.00 0.00 2.92
3069 3349 7.066284 AGTGCCATTAGTTACTTCATTGATCAC 59.934 37.037 0.00 0.00 0.00 3.06
3070 3350 7.066284 GTGCCATTAGTTACTTCATTGATCACT 59.934 37.037 0.00 0.00 0.00 3.41
3071 3351 7.280876 TGCCATTAGTTACTTCATTGATCACTC 59.719 37.037 0.00 0.00 0.00 3.51
3072 3352 7.497249 GCCATTAGTTACTTCATTGATCACTCT 59.503 37.037 0.00 0.00 0.00 3.24
3073 3353 8.824781 CCATTAGTTACTTCATTGATCACTCTG 58.175 37.037 0.00 0.00 0.00 3.35
3074 3354 9.376075 CATTAGTTACTTCATTGATCACTCTGT 57.624 33.333 0.00 0.00 0.00 3.41
3075 3355 9.950496 ATTAGTTACTTCATTGATCACTCTGTT 57.050 29.630 0.00 0.00 0.00 3.16
3077 3357 8.994429 AGTTACTTCATTGATCACTCTGTTAG 57.006 34.615 0.00 0.00 0.00 2.34
3078 3358 7.547370 AGTTACTTCATTGATCACTCTGTTAGC 59.453 37.037 0.00 0.00 0.00 3.09
3079 3359 5.798132 ACTTCATTGATCACTCTGTTAGCA 58.202 37.500 0.00 0.00 0.00 3.49
3080 3360 6.413052 ACTTCATTGATCACTCTGTTAGCAT 58.587 36.000 0.00 0.00 0.00 3.79
3081 3361 6.883217 ACTTCATTGATCACTCTGTTAGCATT 59.117 34.615 0.00 0.00 0.00 3.56
3082 3362 7.392673 ACTTCATTGATCACTCTGTTAGCATTT 59.607 33.333 0.00 0.00 0.00 2.32
3083 3363 7.080353 TCATTGATCACTCTGTTAGCATTTG 57.920 36.000 0.00 0.00 0.00 2.32
3084 3364 6.656270 TCATTGATCACTCTGTTAGCATTTGT 59.344 34.615 0.00 0.00 0.00 2.83
3085 3365 7.823799 TCATTGATCACTCTGTTAGCATTTGTA 59.176 33.333 0.00 0.00 0.00 2.41
3086 3366 8.618677 CATTGATCACTCTGTTAGCATTTGTAT 58.381 33.333 0.00 0.00 0.00 2.29
3087 3367 9.836864 ATTGATCACTCTGTTAGCATTTGTATA 57.163 29.630 0.00 0.00 0.00 1.47
3088 3368 9.836864 TTGATCACTCTGTTAGCATTTGTATAT 57.163 29.630 0.00 0.00 0.00 0.86
3089 3369 9.264719 TGATCACTCTGTTAGCATTTGTATATG 57.735 33.333 0.00 0.00 0.00 1.78
3090 3370 8.613060 ATCACTCTGTTAGCATTTGTATATGG 57.387 34.615 0.00 0.00 0.00 2.74
3091 3371 6.992123 TCACTCTGTTAGCATTTGTATATGGG 59.008 38.462 0.00 0.00 0.00 4.00
3141 3482 6.569179 CATGAGAATATGCATGGTTCATGA 57.431 37.500 25.23 12.92 43.81 3.07
3210 4703 3.044156 TCAATGGGAGGAGAATGGAGAG 58.956 50.000 0.00 0.00 0.00 3.20
3236 4736 2.760650 AGAGTCATGCATACGTCCTTCA 59.239 45.455 0.00 0.00 0.00 3.02
3291 4791 5.294552 GTGACCTGAAATTGCTATACCAGAC 59.705 44.000 9.92 5.97 0.00 3.51
3319 5001 4.026558 CACGTGTGTCTCATATTTCATCCG 60.027 45.833 7.58 0.00 0.00 4.18
3351 5033 3.652057 TGGTCCCTTCCAATTCTGATC 57.348 47.619 0.00 0.00 34.24 2.92
3352 5034 2.242196 TGGTCCCTTCCAATTCTGATCC 59.758 50.000 0.00 0.00 34.24 3.36
3353 5035 2.511637 GGTCCCTTCCAATTCTGATCCT 59.488 50.000 0.00 0.00 0.00 3.24
3355 5037 3.200825 GTCCCTTCCAATTCTGATCCTGA 59.799 47.826 0.00 0.00 0.00 3.86
3356 5038 3.851976 TCCCTTCCAATTCTGATCCTGAA 59.148 43.478 0.00 0.00 0.00 3.02
3394 5076 8.556213 TTTGACTAAATTATGGTTTACTCGCT 57.444 30.769 0.00 0.00 0.00 4.93
3446 5186 5.922739 TTCCGAATATGAATCCAACGATG 57.077 39.130 0.00 0.00 0.00 3.84
3461 5201 4.800993 CCAACGATGTACTTTTTGTTGCAA 59.199 37.500 0.00 0.00 36.37 4.08
3525 6105 1.456296 GTTCTGCTGCACATGGATGA 58.544 50.000 0.00 0.00 0.00 2.92
3619 6199 8.793592 ACTAGCCTAAAGTTTAGTCAAATTTGG 58.206 33.333 17.90 4.99 0.00 3.28
3620 6200 6.993079 AGCCTAAAGTTTAGTCAAATTTGGG 58.007 36.000 17.90 7.72 0.00 4.12
3621 6201 6.553476 AGCCTAAAGTTTAGTCAAATTTGGGT 59.447 34.615 17.90 8.18 0.00 4.51
3622 6202 7.070696 AGCCTAAAGTTTAGTCAAATTTGGGTT 59.929 33.333 17.90 5.41 0.00 4.11
3623 6203 7.384115 GCCTAAAGTTTAGTCAAATTTGGGTTC 59.616 37.037 17.90 6.86 0.00 3.62
3624 6204 7.593644 CCTAAAGTTTAGTCAAATTTGGGTTCG 59.406 37.037 17.90 0.00 0.00 3.95
3625 6205 5.447624 AGTTTAGTCAAATTTGGGTTCGG 57.552 39.130 17.90 0.00 0.00 4.30
3626 6206 5.134661 AGTTTAGTCAAATTTGGGTTCGGA 58.865 37.500 17.90 0.00 0.00 4.55
3627 6207 5.595133 AGTTTAGTCAAATTTGGGTTCGGAA 59.405 36.000 17.90 2.56 0.00 4.30
3628 6208 6.097129 AGTTTAGTCAAATTTGGGTTCGGAAA 59.903 34.615 17.90 6.74 0.00 3.13
3629 6209 6.658188 TTAGTCAAATTTGGGTTCGGAAAT 57.342 33.333 17.90 0.00 0.00 2.17
3630 6210 7.762588 TTAGTCAAATTTGGGTTCGGAAATA 57.237 32.000 17.90 0.00 0.00 1.40
3631 6211 6.267496 AGTCAAATTTGGGTTCGGAAATAG 57.733 37.500 17.90 0.00 0.00 1.73
3632 6212 6.007703 AGTCAAATTTGGGTTCGGAAATAGA 58.992 36.000 17.90 0.00 0.00 1.98
3633 6213 6.151144 AGTCAAATTTGGGTTCGGAAATAGAG 59.849 38.462 17.90 0.00 0.00 2.43
3634 6214 5.417580 TCAAATTTGGGTTCGGAAATAGAGG 59.582 40.000 17.90 0.00 0.00 3.69
3635 6215 3.359695 TTTGGGTTCGGAAATAGAGGG 57.640 47.619 0.00 0.00 0.00 4.30
3636 6216 1.209621 TGGGTTCGGAAATAGAGGGG 58.790 55.000 0.00 0.00 0.00 4.79
3637 6217 0.472898 GGGTTCGGAAATAGAGGGGG 59.527 60.000 0.00 0.00 0.00 5.40
3638 6218 1.503800 GGTTCGGAAATAGAGGGGGA 58.496 55.000 0.00 0.00 0.00 4.81
3639 6219 1.416772 GGTTCGGAAATAGAGGGGGAG 59.583 57.143 0.00 0.00 0.00 4.30
3640 6220 2.395619 GTTCGGAAATAGAGGGGGAGA 58.604 52.381 0.00 0.00 0.00 3.71
3641 6221 2.973406 GTTCGGAAATAGAGGGGGAGAT 59.027 50.000 0.00 0.00 0.00 2.75
3642 6222 3.346146 TCGGAAATAGAGGGGGAGATT 57.654 47.619 0.00 0.00 0.00 2.40
3643 6223 4.480777 TCGGAAATAGAGGGGGAGATTA 57.519 45.455 0.00 0.00 0.00 1.75
3644 6224 4.823107 TCGGAAATAGAGGGGGAGATTAA 58.177 43.478 0.00 0.00 0.00 1.40
3645 6225 4.591924 TCGGAAATAGAGGGGGAGATTAAC 59.408 45.833 0.00 0.00 0.00 2.01
3646 6226 4.347000 CGGAAATAGAGGGGGAGATTAACA 59.653 45.833 0.00 0.00 0.00 2.41
3647 6227 5.163237 CGGAAATAGAGGGGGAGATTAACAA 60.163 44.000 0.00 0.00 0.00 2.83
3648 6228 6.634039 CGGAAATAGAGGGGGAGATTAACAAA 60.634 42.308 0.00 0.00 0.00 2.83
3649 6229 6.546403 GGAAATAGAGGGGGAGATTAACAAAC 59.454 42.308 0.00 0.00 0.00 2.93
3650 6230 3.629142 AGAGGGGGAGATTAACAAACG 57.371 47.619 0.00 0.00 0.00 3.60
3651 6231 2.238898 AGAGGGGGAGATTAACAAACGG 59.761 50.000 0.00 0.00 0.00 4.44
3652 6232 2.237893 GAGGGGGAGATTAACAAACGGA 59.762 50.000 0.00 0.00 0.00 4.69
3653 6233 2.850568 AGGGGGAGATTAACAAACGGAT 59.149 45.455 0.00 0.00 0.00 4.18
3654 6234 4.042174 AGGGGGAGATTAACAAACGGATA 58.958 43.478 0.00 0.00 0.00 2.59
3655 6235 4.102681 AGGGGGAGATTAACAAACGGATAG 59.897 45.833 0.00 0.00 0.00 2.08
3656 6236 4.102054 GGGGGAGATTAACAAACGGATAGA 59.898 45.833 0.00 0.00 0.00 1.98
3657 6237 5.298347 GGGGAGATTAACAAACGGATAGAG 58.702 45.833 0.00 0.00 0.00 2.43
3658 6238 5.298347 GGGAGATTAACAAACGGATAGAGG 58.702 45.833 0.00 0.00 0.00 3.69
3659 6239 5.070047 GGGAGATTAACAAACGGATAGAGGA 59.930 44.000 0.00 0.00 0.00 3.71
3660 6240 6.407752 GGGAGATTAACAAACGGATAGAGGAA 60.408 42.308 0.00 0.00 0.00 3.36
3661 6241 6.702282 GGAGATTAACAAACGGATAGAGGAAG 59.298 42.308 0.00 0.00 0.00 3.46
3662 6242 7.184067 AGATTAACAAACGGATAGAGGAAGT 57.816 36.000 0.00 0.00 0.00 3.01
3663 6243 8.302515 AGATTAACAAACGGATAGAGGAAGTA 57.697 34.615 0.00 0.00 0.00 2.24
3664 6244 8.414778 AGATTAACAAACGGATAGAGGAAGTAG 58.585 37.037 0.00 0.00 0.00 2.57
3665 6245 7.707624 TTAACAAACGGATAGAGGAAGTAGA 57.292 36.000 0.00 0.00 0.00 2.59
3666 6246 5.838531 ACAAACGGATAGAGGAAGTAGAG 57.161 43.478 0.00 0.00 0.00 2.43
3667 6247 5.262804 ACAAACGGATAGAGGAAGTAGAGT 58.737 41.667 0.00 0.00 0.00 3.24
3668 6248 6.421485 ACAAACGGATAGAGGAAGTAGAGTA 58.579 40.000 0.00 0.00 0.00 2.59
3669 6249 6.543100 ACAAACGGATAGAGGAAGTAGAGTAG 59.457 42.308 0.00 0.00 0.00 2.57
3670 6250 5.892524 ACGGATAGAGGAAGTAGAGTAGT 57.107 43.478 0.00 0.00 0.00 2.73
3671 6251 6.992664 ACGGATAGAGGAAGTAGAGTAGTA 57.007 41.667 0.00 0.00 0.00 1.82
3672 6252 6.758254 ACGGATAGAGGAAGTAGAGTAGTAC 58.242 44.000 0.00 0.00 0.00 2.73
3673 6253 6.326064 ACGGATAGAGGAAGTAGAGTAGTACA 59.674 42.308 2.52 0.00 0.00 2.90
3674 6254 6.646240 CGGATAGAGGAAGTAGAGTAGTACAC 59.354 46.154 2.52 0.00 0.00 2.90
3675 6255 7.471819 CGGATAGAGGAAGTAGAGTAGTACACT 60.472 44.444 5.54 5.54 41.47 3.55
3676 6256 8.212995 GGATAGAGGAAGTAGAGTAGTACACTT 58.787 40.741 5.53 5.02 37.72 3.16
3677 6257 8.967664 ATAGAGGAAGTAGAGTAGTACACTTG 57.032 38.462 5.53 0.00 37.72 3.16
3678 6258 6.781943 AGAGGAAGTAGAGTAGTACACTTGT 58.218 40.000 5.53 0.00 37.72 3.16
3679 6259 7.915930 AGAGGAAGTAGAGTAGTACACTTGTA 58.084 38.462 5.53 0.00 37.72 2.41
3680 6260 8.550585 AGAGGAAGTAGAGTAGTACACTTGTAT 58.449 37.037 5.53 0.00 37.72 2.29
3681 6261 9.176460 GAGGAAGTAGAGTAGTACACTTGTATT 57.824 37.037 5.53 0.00 37.72 1.89
3682 6262 8.958506 AGGAAGTAGAGTAGTACACTTGTATTG 58.041 37.037 5.53 0.00 37.72 1.90
3683 6263 7.701501 GGAAGTAGAGTAGTACACTTGTATTGC 59.298 40.741 5.53 0.00 37.72 3.56
3684 6264 7.698506 AGTAGAGTAGTACACTTGTATTGCA 57.301 36.000 5.53 0.00 37.72 4.08
3685 6265 7.536855 AGTAGAGTAGTACACTTGTATTGCAC 58.463 38.462 5.53 0.00 37.72 4.57
3686 6266 5.399858 AGAGTAGTACACTTGTATTGCACG 58.600 41.667 2.52 0.00 37.72 5.34
3687 6267 3.924686 AGTAGTACACTTGTATTGCACGC 59.075 43.478 2.52 0.00 31.59 5.34
3688 6268 3.040147 AGTACACTTGTATTGCACGCT 57.960 42.857 0.00 0.00 32.54 5.07
3689 6269 3.399330 AGTACACTTGTATTGCACGCTT 58.601 40.909 0.00 0.00 32.54 4.68
3690 6270 3.813166 AGTACACTTGTATTGCACGCTTT 59.187 39.130 0.00 0.00 32.54 3.51
3691 6271 3.708563 ACACTTGTATTGCACGCTTTT 57.291 38.095 0.00 0.00 0.00 2.27
3716 6498 5.277297 GCAAACAAATTAAACTGGACTTGCC 60.277 40.000 0.00 0.00 31.53 4.52
3742 6524 7.563270 CAAAATGTTGGAAAAATGTTACTCCG 58.437 34.615 0.00 0.00 0.00 4.63
3746 6528 4.088056 TGGAAAAATGTTACTCCGTCCA 57.912 40.909 0.00 0.00 0.00 4.02
3760 6542 4.040461 ACTCCGTCCATTCCATAATGTAGG 59.960 45.833 0.00 0.00 40.84 3.18
3771 6554 8.960591 CATTCCATAATGTAGGGCCTATAAAAG 58.039 37.037 17.90 6.05 38.15 2.27
3829 6612 7.347508 AGTTCGTCTACAACATCAAACATAC 57.652 36.000 0.00 0.00 0.00 2.39
3830 6613 7.152645 AGTTCGTCTACAACATCAAACATACT 58.847 34.615 0.00 0.00 0.00 2.12
3831 6614 7.656137 AGTTCGTCTACAACATCAAACATACTT 59.344 33.333 0.00 0.00 0.00 2.24
3833 6616 9.647797 TTCGTCTACAACATCAAACATACTTAT 57.352 29.630 0.00 0.00 0.00 1.73
3967 6762 4.853924 AAAATCTGTAGGCACTTTGTGG 57.146 40.909 0.00 0.00 41.75 4.17
3974 6769 2.610438 AGGCACTTTGTGGAATGGAT 57.390 45.000 0.00 0.00 27.25 3.41
3983 6778 5.044919 ACTTTGTGGAATGGATGGAGTATGA 60.045 40.000 0.00 0.00 0.00 2.15
3985 6780 3.136443 TGTGGAATGGATGGAGTATGACC 59.864 47.826 0.00 0.00 0.00 4.02
3987 6782 3.648067 TGGAATGGATGGAGTATGACCTC 59.352 47.826 0.00 0.00 0.00 3.85
4017 6834 7.751047 TTTACTACATATCGCTGTTTCACTC 57.249 36.000 0.00 0.00 0.00 3.51
4031 6848 1.675552 TCACTCTGCATGCATGATGG 58.324 50.000 30.64 17.44 31.99 3.51
4256 8580 0.531200 CGCTTTCCGACTACTCCCTT 59.469 55.000 0.00 0.00 40.02 3.95
4286 8610 4.918278 TCCCCACCACCGTCGTCA 62.918 66.667 0.00 0.00 0.00 4.35
4292 8616 2.279851 CCACCGTCGTCAGTGCAA 60.280 61.111 0.00 0.00 32.48 4.08
4472 8796 2.125310 CTGCCGCGATGGGTACAA 60.125 61.111 8.23 0.00 38.63 2.41
4534 8858 2.993008 GCTGGTGAGCCTGGATGA 59.007 61.111 0.00 0.00 39.57 2.92
4753 9080 2.094539 CAGCGCAACGTCGTGATG 59.905 61.111 11.47 0.00 0.00 3.07
4786 9114 2.616842 ACGATGTGTTTGGAGTTTGGAC 59.383 45.455 0.00 0.00 0.00 4.02
4794 9122 4.218200 TGTTTGGAGTTTGGACATATGCAG 59.782 41.667 1.58 0.00 0.00 4.41
4795 9123 3.998913 TGGAGTTTGGACATATGCAGA 57.001 42.857 1.58 0.00 0.00 4.26
5038 9366 3.421844 AGAAGACAACCCCAAATGCTAC 58.578 45.455 0.00 0.00 0.00 3.58
5057 9385 0.541392 CATCCCTGATCGTCCCAACA 59.459 55.000 0.00 0.00 0.00 3.33
5146 9474 1.672356 GCTCGGTTGCATCACCTGT 60.672 57.895 6.03 0.00 34.22 4.00
5274 9605 0.912486 GGGTAATGAGGTGGAGCTGT 59.088 55.000 0.00 0.00 0.00 4.40
5417 9748 1.408969 AACCCAAAAGCCGTGTTCAT 58.591 45.000 0.00 0.00 0.00 2.57
5432 9763 1.550130 TTCATTTCCCGGACTCCGCT 61.550 55.000 12.37 0.00 46.86 5.52
5468 9799 1.403116 CGGCTACACACACGGTTGATA 60.403 52.381 0.00 0.00 0.00 2.15
5475 9806 5.508200 ACACACACGGTTGATACATTTTT 57.492 34.783 0.00 0.00 0.00 1.94
5540 9871 0.107214 CCCATCTGCCACATAACCGT 60.107 55.000 0.00 0.00 0.00 4.83
5708 10039 0.751643 AACAAGACCAGCAAAGCCGT 60.752 50.000 0.00 0.00 0.00 5.68
5711 10042 3.423154 GACCAGCAAAGCCGTCCG 61.423 66.667 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 2.426406 ATCGCTCCGCACATCCTCA 61.426 57.895 0.00 0.00 0.00 3.86
35 36 0.026803 GCTTCGGCATCGTTCACATC 59.973 55.000 0.00 0.00 41.33 3.06
93 94 4.868195 GCATTGAAGCGGTTGACC 57.132 55.556 3.70 0.00 0.00 4.02
113 114 0.655733 AATCAAATTCGGCCGCTACG 59.344 50.000 23.51 7.72 0.00 3.51
139 140 1.197721 CTTCAATGCGGACACACCTTC 59.802 52.381 0.00 0.00 36.31 3.46
143 144 4.847255 GCTTCAATGCGGACACAC 57.153 55.556 0.00 0.00 0.00 3.82
178 179 4.996434 GGATGGGAGGATGGCGCG 62.996 72.222 0.00 0.00 0.00 6.86
184 185 0.400525 ATGTGACCGGATGGGAGGAT 60.401 55.000 9.46 0.00 40.75 3.24
185 186 1.002921 ATGTGACCGGATGGGAGGA 59.997 57.895 9.46 0.00 40.75 3.71
221 232 2.281070 CCAGAGCACACAACGGCT 60.281 61.111 0.00 0.00 44.48 5.52
226 237 2.595463 GGCAGCCAGAGCACACAA 60.595 61.111 6.55 0.00 43.56 3.33
235 246 2.411701 CGCATCAATGGCAGCCAG 59.588 61.111 21.51 7.37 36.75 4.85
242 253 4.892379 CACGCGCCGCATCAATGG 62.892 66.667 10.75 0.00 0.00 3.16
266 277 0.319641 GTCTCTCCCGCGTTTTCTGT 60.320 55.000 4.92 0.00 0.00 3.41
267 278 1.344942 CGTCTCTCCCGCGTTTTCTG 61.345 60.000 4.92 0.00 0.00 3.02
268 279 1.080705 CGTCTCTCCCGCGTTTTCT 60.081 57.895 4.92 0.00 0.00 2.52
285 296 1.816224 CCCATAAAACAACCTCACCCG 59.184 52.381 0.00 0.00 0.00 5.28
288 299 2.231235 CTGGCCCATAAAACAACCTCAC 59.769 50.000 0.00 0.00 0.00 3.51
291 302 1.149077 ACCTGGCCCATAAAACAACCT 59.851 47.619 0.00 0.00 0.00 3.50
301 312 0.912486 GTCTGACTAACCTGGCCCAT 59.088 55.000 0.00 0.00 0.00 4.00
306 317 1.067776 GTCCACGTCTGACTAACCTGG 60.068 57.143 6.21 0.00 0.00 4.45
321 332 2.342648 GACCACTCCCACGTCCAC 59.657 66.667 0.00 0.00 0.00 4.02
329 340 3.756727 GACGTCCGGACCACTCCC 61.757 72.222 28.52 7.77 31.93 4.30
394 407 2.125673 AATCCGCTCGGTGGTTCG 60.126 61.111 8.28 0.00 34.40 3.95
395 408 0.462047 ATCAATCCGCTCGGTGGTTC 60.462 55.000 8.28 0.00 34.40 3.62
396 409 0.828022 TATCAATCCGCTCGGTGGTT 59.172 50.000 8.28 0.11 34.40 3.67
407 420 3.997021 CCAACGCAGTCCTATATCAATCC 59.003 47.826 0.00 0.00 45.00 3.01
408 421 4.883083 TCCAACGCAGTCCTATATCAATC 58.117 43.478 0.00 0.00 45.00 2.67
416 429 1.262417 TGTCATCCAACGCAGTCCTA 58.738 50.000 0.00 0.00 45.00 2.94
423 436 1.268335 ACGTGTTTTGTCATCCAACGC 60.268 47.619 0.00 0.00 31.20 4.84
424 437 2.601266 GGACGTGTTTTGTCATCCAACG 60.601 50.000 0.00 0.00 38.10 4.10
437 450 4.955774 GTGCGGTCCGGACGTGTT 62.956 66.667 27.68 0.00 38.53 3.32
450 463 0.099436 GCAAAGGCATTCCTAGTGCG 59.901 55.000 4.60 0.00 43.40 5.34
452 465 1.398390 GACGCAAAGGCATTCCTAGTG 59.602 52.381 0.00 0.00 43.40 2.74
453 466 1.739067 GACGCAAAGGCATTCCTAGT 58.261 50.000 0.00 0.00 43.40 2.57
455 468 0.248012 TCGACGCAAAGGCATTCCTA 59.752 50.000 0.00 0.00 43.40 2.94
457 470 1.134694 GTCGACGCAAAGGCATTCC 59.865 57.895 0.00 0.00 41.24 3.01
458 471 1.134694 GGTCGACGCAAAGGCATTC 59.865 57.895 9.92 0.00 41.24 2.67
459 472 1.599518 TGGTCGACGCAAAGGCATT 60.600 52.632 9.92 0.00 41.24 3.56
460 473 2.031919 TGGTCGACGCAAAGGCAT 59.968 55.556 9.92 0.00 41.24 4.40
461 474 2.970324 GTGGTCGACGCAAAGGCA 60.970 61.111 9.92 0.00 41.24 4.75
462 475 3.723348 GGTGGTCGACGCAAAGGC 61.723 66.667 9.92 0.00 0.00 4.35
463 476 3.047877 GGGTGGTCGACGCAAAGG 61.048 66.667 9.92 0.00 37.46 3.11
472 518 0.178068 CAATACAGAGGGGGTGGTCG 59.822 60.000 0.00 0.00 0.00 4.79
492 538 4.368315 TCACTATCATCGATGAAAACGGG 58.632 43.478 30.41 19.09 40.69 5.28
507 553 2.673368 CACGCTCCCAGTTTTCACTATC 59.327 50.000 0.00 0.00 0.00 2.08
508 554 2.301870 TCACGCTCCCAGTTTTCACTAT 59.698 45.455 0.00 0.00 0.00 2.12
509 555 1.689813 TCACGCTCCCAGTTTTCACTA 59.310 47.619 0.00 0.00 0.00 2.74
510 556 0.468226 TCACGCTCCCAGTTTTCACT 59.532 50.000 0.00 0.00 0.00 3.41
551 601 1.211949 CAAGTGGGATCGGGGTAACAT 59.788 52.381 0.00 0.00 39.74 2.71
552 602 0.616371 CAAGTGGGATCGGGGTAACA 59.384 55.000 0.00 0.00 39.74 2.41
603 656 4.121317 CAATGCCGTTTATGCCATCATTT 58.879 39.130 0.00 0.00 34.22 2.32
817 876 2.155279 CGACAGAGTGGAGACAGAGAA 58.845 52.381 0.00 0.00 44.46 2.87
845 904 3.838244 TCATGTGGTTATAGGCTGACC 57.162 47.619 0.00 3.29 34.08 4.02
888 947 1.294138 GTACACGCTGGGTTGCCTA 59.706 57.895 0.00 0.00 0.00 3.93
901 971 3.581024 TGTCCCGTGTCTTATGTACAC 57.419 47.619 0.00 0.00 43.04 2.90
1042 1112 3.257933 CCGCTTGGCAAGTCTGAC 58.742 61.111 26.71 10.06 0.00 3.51
1373 1443 2.660064 TTGCGGAGGGAGAGCTTCC 61.660 63.158 6.43 6.43 46.00 3.46
1374 1444 1.448717 GTTGCGGAGGGAGAGCTTC 60.449 63.158 0.00 0.00 0.00 3.86
1376 1446 2.217038 TTGTTGCGGAGGGAGAGCT 61.217 57.895 0.00 0.00 0.00 4.09
1408 1478 1.002857 AAGAAGTCCTTGGGGATGGG 58.997 55.000 0.00 0.00 44.33 4.00
1417 1487 2.029844 GCAGCGCGAAGAAGTCCTT 61.030 57.895 12.10 0.00 37.93 3.36
1418 1488 2.433318 GCAGCGCGAAGAAGTCCT 60.433 61.111 12.10 0.00 0.00 3.85
1516 1586 4.129737 GTAGAGCGCGAGGTGCCA 62.130 66.667 12.10 0.00 45.11 4.92
1587 1657 1.080025 GTCGAGCCTAAGCAACCGT 60.080 57.895 0.00 0.00 43.56 4.83
1702 1772 2.184579 GAAGTTCGCGAGGGAGGG 59.815 66.667 9.59 0.00 0.00 4.30
1703 1773 1.139947 GAGAAGTTCGCGAGGGAGG 59.860 63.158 9.59 0.00 0.00 4.30
1704 1774 1.226435 CGAGAAGTTCGCGAGGGAG 60.226 63.158 22.48 0.00 42.24 4.30
1714 1784 3.732471 GCGAATGACTCTAGCGAGAAGTT 60.732 47.826 0.00 0.00 39.74 2.66
1715 1785 2.223386 GCGAATGACTCTAGCGAGAAGT 60.223 50.000 0.00 0.00 39.74 3.01
1720 1790 1.355563 CGGCGAATGACTCTAGCGA 59.644 57.895 0.00 0.00 0.00 4.93
1724 1794 0.459585 GTTGCCGGCGAATGACTCTA 60.460 55.000 20.60 0.00 0.00 2.43
1991 2061 4.056125 TCAGCGTGTGCCCTCTCG 62.056 66.667 0.00 0.00 44.31 4.04
2444 2517 3.378512 AGCTAATGATGTGGTGAGAGGA 58.621 45.455 0.00 0.00 0.00 3.71
2506 2596 1.967597 GCGGTCAAAACGAGCTAGCC 61.968 60.000 12.13 1.79 40.13 3.93
2551 2644 4.657013 GGAGTTTCACTTCATTCCTCCTT 58.343 43.478 0.00 0.00 35.29 3.36
2554 2647 3.003480 CCGGAGTTTCACTTCATTCCTC 58.997 50.000 0.00 0.00 0.00 3.71
2589 2682 4.072088 CGCAAACGTCGCTGTCCC 62.072 66.667 8.14 0.00 33.53 4.46
2610 2808 0.527565 CCAGGAAAAATGCCGGACAG 59.472 55.000 5.05 0.00 0.00 3.51
2644 2842 1.134946 GATTGCCACCTTTCAATCCCG 59.865 52.381 4.17 0.00 41.44 5.14
2725 2923 1.002087 ACTCTGCGTCCCTTTCGAATT 59.998 47.619 0.00 0.00 0.00 2.17
2742 2940 1.278238 CCGAGCCATACGTTCAACTC 58.722 55.000 0.00 0.00 0.00 3.01
2745 2943 0.739462 CTGCCGAGCCATACGTTCAA 60.739 55.000 0.00 0.00 0.00 2.69
2786 2984 5.478332 ACAAAGAAAATGGAATCTGGAGGAC 59.522 40.000 0.00 0.00 0.00 3.85
2787 2985 5.644188 ACAAAGAAAATGGAATCTGGAGGA 58.356 37.500 0.00 0.00 0.00 3.71
2850 3050 6.200854 GCTAATTCAAAGTTTGACCAGGTTTG 59.799 38.462 17.85 9.71 39.87 2.93
2912 3192 9.767228 ATATGTTAACATTTGTATGCTACCGTA 57.233 29.630 25.31 2.93 37.76 4.02
2957 3237 2.549349 GGAAGGACTTTGGCGTACTTGA 60.549 50.000 0.00 0.00 38.17 3.02
2964 3244 1.550976 AGTCTAGGAAGGACTTTGGCG 59.449 52.381 0.00 0.00 40.65 5.69
2998 3278 3.005155 GTGGATCTGTACCCGGTACATAC 59.995 52.174 27.08 16.58 46.01 2.39
3012 3292 9.455847 CTCTAAAAAGTTTTGAAAGTGGATCTG 57.544 33.333 0.61 0.00 0.00 2.90
3021 3301 9.301153 GCACTGAATCTCTAAAAAGTTTTGAAA 57.699 29.630 0.61 0.00 0.00 2.69
3035 3315 6.552445 AGTAACTAATGGCACTGAATCTCT 57.448 37.500 0.00 0.00 0.00 3.10
3043 3323 7.066284 GTGATCAATGAAGTAACTAATGGCACT 59.934 37.037 0.00 0.00 0.00 4.40
3045 3325 7.112122 AGTGATCAATGAAGTAACTAATGGCA 58.888 34.615 0.00 0.00 0.00 4.92
3046 3326 7.497249 AGAGTGATCAATGAAGTAACTAATGGC 59.503 37.037 0.00 0.00 0.00 4.40
3047 3327 8.824781 CAGAGTGATCAATGAAGTAACTAATGG 58.175 37.037 0.00 0.00 0.00 3.16
3049 3329 9.950496 AACAGAGTGATCAATGAAGTAACTAAT 57.050 29.630 0.00 0.00 0.00 1.73
3052 3332 7.547370 GCTAACAGAGTGATCAATGAAGTAACT 59.453 37.037 0.00 0.00 0.00 2.24
3053 3333 7.331934 TGCTAACAGAGTGATCAATGAAGTAAC 59.668 37.037 0.00 0.00 0.00 2.50
3054 3334 7.386059 TGCTAACAGAGTGATCAATGAAGTAA 58.614 34.615 0.00 0.00 0.00 2.24
3055 3335 6.935167 TGCTAACAGAGTGATCAATGAAGTA 58.065 36.000 0.00 0.14 0.00 2.24
3056 3336 5.798132 TGCTAACAGAGTGATCAATGAAGT 58.202 37.500 0.00 0.00 0.00 3.01
3057 3337 6.922247 ATGCTAACAGAGTGATCAATGAAG 57.078 37.500 0.00 4.01 0.00 3.02
3058 3338 7.175467 ACAAATGCTAACAGAGTGATCAATGAA 59.825 33.333 0.00 0.00 0.00 2.57
3059 3339 6.656270 ACAAATGCTAACAGAGTGATCAATGA 59.344 34.615 0.00 0.00 0.00 2.57
3060 3340 6.849502 ACAAATGCTAACAGAGTGATCAATG 58.150 36.000 0.00 1.05 0.00 2.82
3061 3341 8.743085 ATACAAATGCTAACAGAGTGATCAAT 57.257 30.769 0.00 0.00 0.00 2.57
3062 3342 9.836864 ATATACAAATGCTAACAGAGTGATCAA 57.163 29.630 0.00 0.00 0.00 2.57
3063 3343 9.264719 CATATACAAATGCTAACAGAGTGATCA 57.735 33.333 0.00 0.00 0.00 2.92
3064 3344 8.715998 CCATATACAAATGCTAACAGAGTGATC 58.284 37.037 0.00 0.00 0.00 2.92
3065 3345 7.663081 CCCATATACAAATGCTAACAGAGTGAT 59.337 37.037 0.00 0.00 0.00 3.06
3066 3346 6.992123 CCCATATACAAATGCTAACAGAGTGA 59.008 38.462 0.00 0.00 0.00 3.41
3067 3347 6.767902 ACCCATATACAAATGCTAACAGAGTG 59.232 38.462 0.00 0.00 0.00 3.51
3068 3348 6.767902 CACCCATATACAAATGCTAACAGAGT 59.232 38.462 0.00 0.00 0.00 3.24
3069 3349 6.767902 ACACCCATATACAAATGCTAACAGAG 59.232 38.462 0.00 0.00 0.00 3.35
3070 3350 6.658849 ACACCCATATACAAATGCTAACAGA 58.341 36.000 0.00 0.00 0.00 3.41
3071 3351 6.942532 ACACCCATATACAAATGCTAACAG 57.057 37.500 0.00 0.00 0.00 3.16
3072 3352 8.845227 CATAACACCCATATACAAATGCTAACA 58.155 33.333 0.00 0.00 0.00 2.41
3073 3353 7.807907 GCATAACACCCATATACAAATGCTAAC 59.192 37.037 0.00 0.00 35.49 2.34
3074 3354 7.040062 GGCATAACACCCATATACAAATGCTAA 60.040 37.037 0.00 0.00 37.81 3.09
3075 3355 6.432783 GGCATAACACCCATATACAAATGCTA 59.567 38.462 0.00 0.00 37.81 3.49
3076 3356 5.243730 GGCATAACACCCATATACAAATGCT 59.756 40.000 0.00 0.00 37.81 3.79
3077 3357 5.010516 TGGCATAACACCCATATACAAATGC 59.989 40.000 0.00 0.00 37.16 3.56
3078 3358 6.647334 TGGCATAACACCCATATACAAATG 57.353 37.500 0.00 0.00 0.00 2.32
3079 3359 7.667575 TTTGGCATAACACCCATATACAAAT 57.332 32.000 0.00 0.00 0.00 2.32
3080 3360 7.482169 TTTTGGCATAACACCCATATACAAA 57.518 32.000 0.00 0.00 0.00 2.83
3081 3361 7.482169 TTTTTGGCATAACACCCATATACAA 57.518 32.000 0.00 0.00 0.00 2.41
3172 4665 7.285566 TCCCATTGAAGATAGAAATCTCTTGG 58.714 38.462 0.00 0.00 41.81 3.61
3210 4703 0.933097 CGTATGCATGACTCTGCCAC 59.067 55.000 10.16 0.00 41.58 5.01
3236 4736 9.704357 TAGGTTCCATCACCTTTTTGTGACAGT 62.704 40.741 0.00 0.00 45.76 3.55
3319 5001 3.189910 GGAAGGGACCAATAAACACGAAC 59.810 47.826 0.00 0.00 0.00 3.95
3446 5186 9.177304 GTAGGAGTTATTTGCAACAAAAAGTAC 57.823 33.333 0.00 0.00 0.00 2.73
3461 5201 5.183904 CAGCTGCCAAAAAGTAGGAGTTATT 59.816 40.000 0.00 0.00 0.00 1.40
3525 6105 4.939439 GGTAACGGAATAACAACAGACCAT 59.061 41.667 0.00 0.00 0.00 3.55
3616 6196 1.562475 CCCCTCTATTTCCGAACCCAA 59.438 52.381 0.00 0.00 0.00 4.12
3617 6197 1.209621 CCCCTCTATTTCCGAACCCA 58.790 55.000 0.00 0.00 0.00 4.51
3618 6198 0.472898 CCCCCTCTATTTCCGAACCC 59.527 60.000 0.00 0.00 0.00 4.11
3619 6199 1.416772 CTCCCCCTCTATTTCCGAACC 59.583 57.143 0.00 0.00 0.00 3.62
3620 6200 2.395619 TCTCCCCCTCTATTTCCGAAC 58.604 52.381 0.00 0.00 0.00 3.95
3621 6201 2.860817 TCTCCCCCTCTATTTCCGAA 57.139 50.000 0.00 0.00 0.00 4.30
3622 6202 3.346146 AATCTCCCCCTCTATTTCCGA 57.654 47.619 0.00 0.00 0.00 4.55
3623 6203 4.347000 TGTTAATCTCCCCCTCTATTTCCG 59.653 45.833 0.00 0.00 0.00 4.30
3624 6204 5.906772 TGTTAATCTCCCCCTCTATTTCC 57.093 43.478 0.00 0.00 0.00 3.13
3625 6205 6.260271 CGTTTGTTAATCTCCCCCTCTATTTC 59.740 42.308 0.00 0.00 0.00 2.17
3626 6206 6.120220 CGTTTGTTAATCTCCCCCTCTATTT 58.880 40.000 0.00 0.00 0.00 1.40
3627 6207 5.397559 CCGTTTGTTAATCTCCCCCTCTATT 60.398 44.000 0.00 0.00 0.00 1.73
3628 6208 4.102681 CCGTTTGTTAATCTCCCCCTCTAT 59.897 45.833 0.00 0.00 0.00 1.98
3629 6209 3.453353 CCGTTTGTTAATCTCCCCCTCTA 59.547 47.826 0.00 0.00 0.00 2.43
3630 6210 2.238898 CCGTTTGTTAATCTCCCCCTCT 59.761 50.000 0.00 0.00 0.00 3.69
3631 6211 2.237893 TCCGTTTGTTAATCTCCCCCTC 59.762 50.000 0.00 0.00 0.00 4.30
3632 6212 2.271777 TCCGTTTGTTAATCTCCCCCT 58.728 47.619 0.00 0.00 0.00 4.79
3633 6213 2.793288 TCCGTTTGTTAATCTCCCCC 57.207 50.000 0.00 0.00 0.00 5.40
3634 6214 5.286267 TCTATCCGTTTGTTAATCTCCCC 57.714 43.478 0.00 0.00 0.00 4.81
3635 6215 5.070047 TCCTCTATCCGTTTGTTAATCTCCC 59.930 44.000 0.00 0.00 0.00 4.30
3636 6216 6.158023 TCCTCTATCCGTTTGTTAATCTCC 57.842 41.667 0.00 0.00 0.00 3.71
3637 6217 7.266400 ACTTCCTCTATCCGTTTGTTAATCTC 58.734 38.462 0.00 0.00 0.00 2.75
3638 6218 7.184067 ACTTCCTCTATCCGTTTGTTAATCT 57.816 36.000 0.00 0.00 0.00 2.40
3639 6219 8.411683 TCTACTTCCTCTATCCGTTTGTTAATC 58.588 37.037 0.00 0.00 0.00 1.75
3640 6220 8.302515 TCTACTTCCTCTATCCGTTTGTTAAT 57.697 34.615 0.00 0.00 0.00 1.40
3641 6221 7.395489 ACTCTACTTCCTCTATCCGTTTGTTAA 59.605 37.037 0.00 0.00 0.00 2.01
3642 6222 6.888632 ACTCTACTTCCTCTATCCGTTTGTTA 59.111 38.462 0.00 0.00 0.00 2.41
3643 6223 5.715753 ACTCTACTTCCTCTATCCGTTTGTT 59.284 40.000 0.00 0.00 0.00 2.83
3644 6224 5.262804 ACTCTACTTCCTCTATCCGTTTGT 58.737 41.667 0.00 0.00 0.00 2.83
3645 6225 5.838531 ACTCTACTTCCTCTATCCGTTTG 57.161 43.478 0.00 0.00 0.00 2.93
3646 6226 6.661777 ACTACTCTACTTCCTCTATCCGTTT 58.338 40.000 0.00 0.00 0.00 3.60
3647 6227 6.251255 ACTACTCTACTTCCTCTATCCGTT 57.749 41.667 0.00 0.00 0.00 4.44
3648 6228 5.892524 ACTACTCTACTTCCTCTATCCGT 57.107 43.478 0.00 0.00 0.00 4.69
3649 6229 6.646240 GTGTACTACTCTACTTCCTCTATCCG 59.354 46.154 0.00 0.00 0.00 4.18
3650 6230 7.738847 AGTGTACTACTCTACTTCCTCTATCC 58.261 42.308 0.00 0.00 33.17 2.59
3651 6231 9.048446 CAAGTGTACTACTCTACTTCCTCTATC 57.952 40.741 0.00 0.00 39.18 2.08
3652 6232 8.550585 ACAAGTGTACTACTCTACTTCCTCTAT 58.449 37.037 0.00 0.00 39.18 1.98
3653 6233 7.915930 ACAAGTGTACTACTCTACTTCCTCTA 58.084 38.462 0.00 0.00 39.18 2.43
3654 6234 6.781943 ACAAGTGTACTACTCTACTTCCTCT 58.218 40.000 0.00 0.00 39.18 3.69
3655 6235 8.735692 ATACAAGTGTACTACTCTACTTCCTC 57.264 38.462 0.00 0.00 39.18 3.71
3656 6236 8.958506 CAATACAAGTGTACTACTCTACTTCCT 58.041 37.037 0.00 0.00 39.18 3.36
3657 6237 7.701501 GCAATACAAGTGTACTACTCTACTTCC 59.298 40.741 0.00 0.00 39.18 3.46
3658 6238 8.242053 TGCAATACAAGTGTACTACTCTACTTC 58.758 37.037 0.00 0.00 39.18 3.01
3659 6239 8.027771 GTGCAATACAAGTGTACTACTCTACTT 58.972 37.037 0.00 0.00 39.18 2.24
3660 6240 7.536855 GTGCAATACAAGTGTACTACTCTACT 58.463 38.462 0.00 0.00 39.18 2.57
3661 6241 6.468319 CGTGCAATACAAGTGTACTACTCTAC 59.532 42.308 0.00 0.00 39.18 2.59
3662 6242 6.549061 CGTGCAATACAAGTGTACTACTCTA 58.451 40.000 0.00 0.00 39.18 2.43
3663 6243 5.399858 CGTGCAATACAAGTGTACTACTCT 58.600 41.667 0.00 0.00 39.18 3.24
3664 6244 4.031426 GCGTGCAATACAAGTGTACTACTC 59.969 45.833 0.00 0.00 39.18 2.59
3665 6245 3.924686 GCGTGCAATACAAGTGTACTACT 59.075 43.478 0.00 0.00 42.89 2.57
3666 6246 3.924686 AGCGTGCAATACAAGTGTACTAC 59.075 43.478 0.00 0.00 32.72 2.73
3667 6247 4.182693 AGCGTGCAATACAAGTGTACTA 57.817 40.909 0.00 0.00 32.72 1.82
3668 6248 3.040147 AGCGTGCAATACAAGTGTACT 57.960 42.857 0.00 0.00 32.72 2.73
3669 6249 3.806316 AAGCGTGCAATACAAGTGTAC 57.194 42.857 0.00 0.00 32.72 2.90
3670 6250 4.532276 CAAAAGCGTGCAATACAAGTGTA 58.468 39.130 0.00 0.00 34.67 2.90
3671 6251 3.371168 CAAAAGCGTGCAATACAAGTGT 58.629 40.909 0.00 0.00 0.00 3.55
3672 6252 2.153627 GCAAAAGCGTGCAATACAAGTG 59.846 45.455 5.35 0.00 44.29 3.16
3673 6253 2.393764 GCAAAAGCGTGCAATACAAGT 58.606 42.857 5.35 0.00 44.29 3.16
3682 6262 2.735643 ATTTGTTTGCAAAAGCGTGC 57.264 40.000 14.67 0.48 46.23 5.34
3683 6263 6.192500 CAGTTTAATTTGTTTGCAAAAGCGTG 59.808 34.615 14.67 0.00 46.23 5.34
3684 6264 6.247176 CAGTTTAATTTGTTTGCAAAAGCGT 58.753 32.000 14.67 1.29 46.23 5.07
3685 6265 5.676310 CCAGTTTAATTTGTTTGCAAAAGCG 59.324 36.000 14.67 0.00 46.23 4.68
3686 6266 6.686679 GTCCAGTTTAATTTGTTTGCAAAAGC 59.313 34.615 14.67 2.88 46.23 3.51
3687 6267 7.973601 AGTCCAGTTTAATTTGTTTGCAAAAG 58.026 30.769 14.67 0.00 46.23 2.27
3688 6268 7.913674 AGTCCAGTTTAATTTGTTTGCAAAA 57.086 28.000 14.67 0.00 46.23 2.44
3690 6270 6.183360 GCAAGTCCAGTTTAATTTGTTTGCAA 60.183 34.615 0.00 0.00 37.65 4.08
3691 6271 5.293079 GCAAGTCCAGTTTAATTTGTTTGCA 59.707 36.000 0.00 0.00 37.65 4.08
3698 6480 5.622346 TTTGGGCAAGTCCAGTTTAATTT 57.378 34.783 0.00 0.00 38.17 1.82
3732 6514 5.997746 CATTATGGAATGGACGGAGTAACAT 59.002 40.000 0.00 0.00 38.06 2.71
3742 6524 3.074538 AGGCCCTACATTATGGAATGGAC 59.925 47.826 0.00 0.00 45.83 4.02
3746 6528 8.900802 TCTTTTATAGGCCCTACATTATGGAAT 58.099 33.333 0.00 0.00 0.00 3.01
3953 6745 2.790433 TCCATTCCACAAAGTGCCTAC 58.210 47.619 0.00 0.00 31.34 3.18
3961 6756 5.192927 GTCATACTCCATCCATTCCACAAA 58.807 41.667 0.00 0.00 0.00 2.83
3967 6762 5.559148 AAGAGGTCATACTCCATCCATTC 57.441 43.478 0.00 0.00 38.26 2.67
3994 6789 6.972901 CAGAGTGAAACAGCGATATGTAGTAA 59.027 38.462 0.00 0.00 41.43 2.24
3999 6794 2.932614 GCAGAGTGAAACAGCGATATGT 59.067 45.455 0.00 0.00 41.43 2.29
4005 6800 0.453950 GCATGCAGAGTGAAACAGCG 60.454 55.000 14.21 0.00 41.43 5.18
4017 6834 5.183228 TCATATACTCCATCATGCATGCAG 58.817 41.667 26.69 17.32 0.00 4.41
4031 6848 6.257849 TGCACGGTGAGAATTTTCATATACTC 59.742 38.462 13.29 0.00 0.00 2.59
4033 6850 6.358118 TGCACGGTGAGAATTTTCATATAC 57.642 37.500 13.29 0.00 0.00 1.47
4095 8419 1.296715 GCGTGTTCCAGTCCATCCT 59.703 57.895 0.00 0.00 0.00 3.24
4096 8420 2.100631 CGCGTGTTCCAGTCCATCC 61.101 63.158 0.00 0.00 0.00 3.51
4235 8559 1.511768 GGAGTAGTCGGAAAGCGCT 59.488 57.895 2.64 2.64 0.00 5.92
4256 8580 1.158466 TGGGGAGAAGAGGTGCTGA 59.842 57.895 0.00 0.00 0.00 4.26
4286 8610 2.281070 CCGACACTGCCTTGCACT 60.281 61.111 0.00 0.00 33.79 4.40
4292 8616 2.203728 TACCCACCGACACTGCCT 60.204 61.111 0.00 0.00 0.00 4.75
4439 8763 3.667282 AGGTCCGACGACACACCG 61.667 66.667 0.00 0.00 41.13 4.94
4472 8796 0.338814 ACTCCTCCCTTACCACCGAT 59.661 55.000 0.00 0.00 0.00 4.18
4539 8863 4.292178 CATCTCCTCCTCGGCGCC 62.292 72.222 19.07 19.07 0.00 6.53
4753 9080 1.333619 ACACATCGTCTTTGTTGGTGC 59.666 47.619 0.00 0.00 0.00 5.01
4786 9114 1.009078 CGTGGGTGTGTCTGCATATG 58.991 55.000 0.00 0.00 0.00 1.78
4794 9122 3.118454 CCGCATCGTGGGTGTGTC 61.118 66.667 0.00 0.00 0.00 3.67
4981 9309 3.562973 CGTAGTCGGACCTATGTGTGTAT 59.437 47.826 4.14 0.00 0.00 2.29
5038 9366 0.541392 TGTTGGGACGATCAGGGATG 59.459 55.000 0.00 0.00 0.00 3.51
5057 9385 1.834263 GTTGATCAGTAGTGGAGCCCT 59.166 52.381 0.00 0.00 0.00 5.19
5146 9474 2.011947 CAGGTGTCGACGATACCAGTA 58.988 52.381 35.60 0.00 44.57 2.74
5274 9605 5.934043 CACCATATATGCTTAGTGCTTGCTA 59.066 40.000 7.24 0.00 43.37 3.49
5432 9763 1.347707 AGCCGTGATGGTCTCTTTTCA 59.652 47.619 0.00 0.00 41.21 2.69
5540 9871 2.203224 TTTCGAAAGCCGTGCCCA 60.203 55.556 6.47 0.00 39.75 5.36
5711 10042 1.714899 CGGGATTTGTCGGCACATCC 61.715 60.000 24.00 24.00 46.23 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.