AutoCloner

Multiple sequence alignment - TraesCS3D01G390700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3D01G390700	chr3D	100.000	2586	0	0	1	2586	505796449	505793864	0.000000e+00	4776.0
1	TraesCS3D01G390700	chr3D	94.713	435	22	1	977	1411	505982524	505982091	0.000000e+00	675.0
2	TraesCS3D01G390700	chr3D	85.895	475	29	20	973	1409	505999386	505998912	3.010000e-129	472.0
3	TraesCS3D01G390700	chr3D	86.547	446	24	13	982	1409	505779762	505779335	2.350000e-125	459.0
4	TraesCS3D01G390700	chr3D	76.941	837	135	37	1468	2300	505997875	505997093	8.550000e-115	424.0
5	TraesCS3D01G390700	chr3D	90.155	193	12	4	790	981	505982747	505982561	7.150000e-61	244.0
6	TraesCS3D01G390700	chr3D	88.000	175	18	3	1468	1640	505974056	505973883	1.210000e-48	204.0
7	TraesCS3D01G390700	chr3D	93.846	65	3	1	738	801	505983216	505983152	2.120000e-16	97.1
8	TraesCS3D01G390700	chr3D	85.246	61	8	1	2483	2543	415160595	415160654	7.730000e-06	62.1
9	TraesCS3D01G390700	chr3A	90.814	1633	104	21	977	2586	644623561	644621952	0.000000e+00	2143.0
10	TraesCS3D01G390700	chr3A	86.813	455	24	21	987	1411	644667656	644667208	2.330000e-130	475.0
11	TraesCS3D01G390700	chr3A	85.088	456	35	12	982	1422	644610916	644610479	3.950000e-118	435.0
12	TraesCS3D01G390700	chr3A	76.416	865	139	41	1468	2297	644666658	644665824	8.620000e-110	407.0
13	TraesCS3D01G390700	chr3A	90.094	212	13	5	772	981	644623803	644623598	4.240000e-68	268.0
14	TraesCS3D01G390700	chr3A	91.509	106	7	2	602	706	644624201	644624097	7.460000e-31	145.0
15	TraesCS3D01G390700	chr3B	89.011	1001	74	20	1446	2428	667680910	667679928	0.000000e+00	1206.0
16	TraesCS3D01G390700	chr3B	88.889	612	57	3	1	603	115803687	115804296	0.000000e+00	743.0
17	TraesCS3D01G390700	chr3B	93.082	477	24	3	977	1452	667681417	667680949	0.000000e+00	689.0
18	TraesCS3D01G390700	chr3B	86.652	457	31	11	982	1423	667644969	667644528	1.800000e-131	479.0
19	TraesCS3D01G390700	chr3B	86.758	438	31	14	1001	1411	667709474	667709037	1.810000e-126	462.0
20	TraesCS3D01G390700	chr3B	77.835	582	87	25	1497	2051	667707740	667707174	3.210000e-84	322.0
21	TraesCS3D01G390700	chr3B	90.498	221	13	5	763	981	667681668	667681454	4.210000e-73	285.0
22	TraesCS3D01G390700	chr3B	88.387	155	12	2	2434	2586	667663952	667663802	5.680000e-42	182.0
23	TraesCS3D01G390700	chr3B	97.500	40	1	0	2506	2545	237334296	237334335	4.620000e-08	69.4
24	TraesCS3D01G390700	chr3B	93.478	46	2	1	2499	2543	637059386	637059431	1.660000e-07	67.6
25	TraesCS3D01G390700	chr1D	96.417	614	13	3	1	607	473529370	473529981	0.000000e+00	1003.0
26	TraesCS3D01G390700	chr2D	95.981	622	16	3	1	614	261817369	261816749	0.000000e+00	1002.0
27	TraesCS3D01G390700	chr2D	96.033	605	17	1	1	598	261820521	261819917	0.000000e+00	977.0
28	TraesCS3D01G390700	chr4B	93.617	611	28	5	1	603	670070189	670070796	0.000000e+00	902.0
29	TraesCS3D01G390700	chr7A	93.074	592	38	3	1	591	115785059	115784470	0.000000e+00	863.0
30	TraesCS3D01G390700	chr6A	92.450	596	42	3	1	594	557566097	557565503	0.000000e+00	848.0
31	TraesCS3D01G390700	chr6A	93.708	445	25	3	151	594	557565492	557565050	0.000000e+00	664.0
32	TraesCS3D01G390700	chr6A	96.970	33	0	1	2544	2576	575299913	575299944	1.000000e-03	54.7
33	TraesCS3D01G390700	chr5B	85.714	609	41	15	1	591	491050391	491050971	3.680000e-168	601.0
34	TraesCS3D01G390700	chr1A	88.608	237	26	1	4	239	193239234	193238998	1.170000e-73	287.0
35	TraesCS3D01G390700	chr1A	97.436	39	1	0	2506	2544	12091216	12091254	1.660000e-07	67.6
36	TraesCS3D01G390700	chr1A	96.774	31	1	0	2545	2575	307037753	307037723	5.000000e-03	52.8
37	TraesCS3D01G390700	chr5D	93.750	48	2	1	2502	2548	407527299	407527346	1.280000e-08	71.3
38	TraesCS3D01G390700	chr5A	93.750	48	2	1	2502	2548	512831173	512831220	1.280000e-08	71.3
39	TraesCS3D01G390700	chr1B	95.349	43	2	0	2502	2544	571427588	571427546	4.620000e-08	69.4
40	TraesCS3D01G390700	chr6D	96.875	32	0	1	2545	2576	429842093	429842123	5.000000e-03	52.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3D01G390700	chr3D	505793864	505796449	2585	True	4776.000000	4776	100.000000	1	2586	1	chr3D.!!$R2	2585
1	TraesCS3D01G390700	chr3D	505997093	505999386	2293	True	448.000000	472	81.418000	973	2300	2	chr3D.!!$R5	1327
2	TraesCS3D01G390700	chr3D	505982091	505983216	1125	True	338.700000	675	92.904667	738	1411	3	chr3D.!!$R4	673
3	TraesCS3D01G390700	chr3A	644621952	644624201	2249	True	852.000000	2143	90.805667	602	2586	3	chr3A.!!$R2	1984
4	TraesCS3D01G390700	chr3A	644665824	644667656	1832	True	441.000000	475	81.614500	987	2297	2	chr3A.!!$R3	1310
5	TraesCS3D01G390700	chr3B	115803687	115804296	609	False	743.000000	743	88.889000	1	603	1	chr3B.!!$F1	602
6	TraesCS3D01G390700	chr3B	667679928	667681668	1740	True	726.666667	1206	90.863667	763	2428	3	chr3B.!!$R3	1665
7	TraesCS3D01G390700	chr3B	667707174	667709474	2300	True	392.000000	462	82.296500	1001	2051	2	chr3B.!!$R4	1050
8	TraesCS3D01G390700	chr1D	473529370	473529981	611	False	1003.000000	1003	96.417000	1	607	1	chr1D.!!$F1	606
9	TraesCS3D01G390700	chr2D	261816749	261820521	3772	True	989.500000	1002	96.007000	1	614	2	chr2D.!!$R1	613
10	TraesCS3D01G390700	chr4B	670070189	670070796	607	False	902.000000	902	93.617000	1	603	1	chr4B.!!$F1	602
11	TraesCS3D01G390700	chr7A	115784470	115785059	589	True	863.000000	863	93.074000	1	591	1	chr7A.!!$R1	590
12	TraesCS3D01G390700	chr6A	557565050	557566097	1047	True	756.000000	848	93.079000	1	594	2	chr6A.!!$R1	593
13	TraesCS3D01G390700	chr5B	491050391	491050971	580	False	601.000000	601	85.714000	1	591	1	chr5B.!!$F1	590

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
206	3360	2.116983	GACCTGCCTGAACTGGAGCA	62.117	60.0	2.01	0.0	33.18	4.26	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2097	8409	0.040958	GCAGTGCAGTGCAGTACAAC	60.041	55.0	35.84	9.06	40.54	3.32	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
206	3360	2.116983	GACCTGCCTGAACTGGAGCA	62.117	60.000	2.01	0.00	33.18	4.26
485	4109	4.134563	CGGATTGTATTTTCCTTCGGGAT	58.865	43.478	0.00	0.00	44.61	3.85
488	4112	4.310022	TTGTATTTTCCTTCGGGATGGT	57.690	40.909	1.11	0.00	44.61	3.55
684	4319	6.367969	TCTTCTGTTTTGTATAGAGAAACGGC	59.632	38.462	0.00	0.00	38.75	5.68
693	4328	2.550830	AGAGAAACGGCAATCACACT	57.449	45.000	0.00	0.00	0.00	3.55
694	4329	2.417719	AGAGAAACGGCAATCACACTC	58.582	47.619	0.00	0.00	0.00	3.51
706	4534	5.447144	GGCAATCACACTCCAAAAACAAAAC	60.447	40.000	0.00	0.00	0.00	2.43
713	4541	5.047660	ACACTCCAAAAACAAAACTGCTACA	60.048	36.000	0.00	0.00	0.00	2.74
717	4545	7.284489	ACTCCAAAAACAAAACTGCTACATCTA	59.716	33.333	0.00	0.00	0.00	1.98
719	4547	7.067615	TCCAAAAACAAAACTGCTACATCTACA	59.932	33.333	0.00	0.00	0.00	2.74
729	4557	9.726438	AAACTGCTACATCTACAAAAACTCTAT	57.274	29.630	0.00	0.00	0.00	1.98
733	4561	9.371136	TGCTACATCTACAAAAACTCTATGAAG	57.629	33.333	0.00	0.00	0.00	3.02
849	5153	6.183360	GGAAAGGTAGGCATCATGAGTTACTA	60.183	42.308	0.09	0.00	0.00	1.82
850	5154	5.793030	AGGTAGGCATCATGAGTTACTAC	57.207	43.478	15.65	15.65	0.00	2.73
851	5155	4.278669	AGGTAGGCATCATGAGTTACTACG	59.721	45.833	16.64	0.00	32.33	3.51
852	5156	4.277672	GGTAGGCATCATGAGTTACTACGA	59.722	45.833	16.64	0.00	32.33	3.43
853	5157	4.576216	AGGCATCATGAGTTACTACGAG	57.424	45.455	0.09	0.00	0.00	4.18
854	5158	3.954904	AGGCATCATGAGTTACTACGAGT	59.045	43.478	0.09	0.00	0.00	4.18
968	5272	4.790962	CCTGAGGCACCGCAGCAT	62.791	66.667	14.30	0.00	41.46	3.79
1042	5387	2.343163	CTACTTCTCCTCGCAGCCGG	62.343	65.000	0.00	0.00	34.56	6.13
1117	5474	4.933064	GGAGGCATCGGACGAGCG	62.933	72.222	0.00	0.00	0.00	5.03
1135	5492	3.922893	GCTGCGTCATGCTCGAGC	61.923	66.667	30.42	30.42	46.63	5.03
1411	5794	2.963101	GGCCCTGGTAAGACTTGTTTTT	59.037	45.455	0.00	0.00	0.00	1.94
1461	7564	9.003658	GGAGATCTGTTTAATTTCTTCTTCACA	57.996	33.333	0.00	0.00	0.00	3.58
1688	7917	4.635223	TGCTTATATGGCTGAGACATGTC	58.365	43.478	18.47	18.47	31.56	3.06
1804	8033	3.243636	TGACACCACGGAAGAGTAAGAAC	60.244	47.826	0.00	0.00	0.00	3.01
1886	8131	5.474578	TCATCATGGGTGATCTAAGTAGC	57.525	43.478	0.00	0.00	43.14	3.58
1890	8135	4.901250	TCATGGGTGATCTAAGTAGCATGA	59.099	41.667	0.00	0.00	0.00	3.07
1917	8162	5.129634	TCTAGAGACCTGCTAGTGATTCTG	58.870	45.833	0.00	0.00	37.28	3.02
2024	8280	5.586243	GCTCAAGTATGGCTTTGTTCTCATA	59.414	40.000	0.00	0.00	34.69	2.15
2052	8340	5.499139	TCGACTTTGATTTGCTTTCAACT	57.501	34.783	0.00	0.00	33.03	3.16
2087	8399	9.770097	CTGTATAGGACTTTGATGAACATATGT	57.230	33.333	1.41	1.41	0.00	2.29
2089	8401	9.547753	GTATAGGACTTTGATGAACATATGTGT	57.452	33.333	9.63	0.00	41.28	3.72
2101	8413	5.940192	AACATATGTGTTGATCGTGTTGT	57.060	34.783	9.63	0.00	46.43	3.32
2103	8415	6.403333	ACATATGTGTTGATCGTGTTGTAC	57.597	37.500	7.78	0.00	34.01	2.90
2104	8416	6.163476	ACATATGTGTTGATCGTGTTGTACT	58.837	36.000	7.78	0.00	34.01	2.73
2105	8417	4.990543	ATGTGTTGATCGTGTTGTACTG	57.009	40.909	0.00	0.00	0.00	2.74
2106	8418	2.542178	TGTGTTGATCGTGTTGTACTGC	59.458	45.455	0.00	0.00	0.00	4.40
2107	8419	2.542178	GTGTTGATCGTGTTGTACTGCA	59.458	45.455	0.00	0.00	0.00	4.41
2108	8420	2.542178	TGTTGATCGTGTTGTACTGCAC	59.458	45.455	9.36	9.36	0.00	4.57
2109	8421	2.800544	GTTGATCGTGTTGTACTGCACT	59.199	45.455	14.91	1.95	33.78	4.40
2110	8422	2.403259	TGATCGTGTTGTACTGCACTG	58.597	47.619	14.91	10.25	33.78	3.66
2111	8423	1.126846	GATCGTGTTGTACTGCACTGC	59.873	52.381	14.91	0.00	33.78	4.40
2112	8424	0.179097	TCGTGTTGTACTGCACTGCA	60.179	50.000	3.11	3.11	36.92	4.41
2113	8425	0.042188	CGTGTTGTACTGCACTGCAC	60.042	55.000	0.00	0.00	33.79	4.57
2114	8426	1.299541	GTGTTGTACTGCACTGCACT	58.700	50.000	0.00	0.00	33.79	4.40
2115	8427	1.003545	GTGTTGTACTGCACTGCACTG	60.004	52.381	0.00	0.00	33.79	3.66
2116	8428	0.040958	GTTGTACTGCACTGCACTGC	60.041	55.000	10.99	10.99	37.70	4.40
2117	8429	0.463474	TTGTACTGCACTGCACTGCA	60.463	50.000	18.27	18.27	45.06	4.41
2134	8446	1.230324	GCAGAGGTGTGGAAACAGTC	58.770	55.000	0.00	0.00	44.46	3.51
2153	8465	9.893305	AAACAGTCTATCCTAAAACAAATTTCG	57.107	29.630	0.00	0.00	32.27	3.46
2164	8476	3.626028	ACAAATTTCGTTGTCCAGCTC	57.374	42.857	0.00	0.00	37.10	4.09
2198	8510	5.260424	TGTGGCTGTTGTTATTGTGGATAT	58.740	37.500	0.00	0.00	0.00	1.63
2199	8511	5.356751	TGTGGCTGTTGTTATTGTGGATATC	59.643	40.000	0.00	0.00	0.00	1.63
2200	8512	5.356751	GTGGCTGTTGTTATTGTGGATATCA	59.643	40.000	4.83	0.00	0.00	2.15
2201	8513	5.948758	TGGCTGTTGTTATTGTGGATATCAA	59.051	36.000	4.83	0.00	30.94	2.57
2202	8514	6.606796	TGGCTGTTGTTATTGTGGATATCAAT	59.393	34.615	4.83	0.00	38.72	2.57
2203	8515	7.777440	TGGCTGTTGTTATTGTGGATATCAATA	59.223	33.333	4.83	0.00	36.92	1.90
2284	8598	3.589988	CCACCTAACTAACTGAGCACTG	58.410	50.000	0.00	0.00	0.00	3.66
2338	8652	1.696063	GGGGATCCCATGAACACATG	58.304	55.000	32.07	0.00	44.65	3.21
2380	8694	2.498644	TACATCGGTGCCAAATGGAA	57.501	45.000	2.98	0.00	37.39	3.53
2414	8728	6.019479	GTGATTCCGAACAGATGACAAGTATC	60.019	42.308	0.00	0.00	0.00	2.24
2421	8735	6.307077	CGAACAGATGACAAGTATCGTTTGTA	59.693	38.462	0.00	0.00	38.78	2.41
2422	8736	7.009265	CGAACAGATGACAAGTATCGTTTGTAT	59.991	37.037	0.00	0.00	38.78	2.29
2456	8770	9.442047	AGAAAACTTAGAACCTGATCATAACAG	57.558	33.333	0.00	0.00	35.43	3.16
2469	8783	7.244886	TGATCATAACAGGAAAAGACAGAGA	57.755	36.000	0.00	0.00	0.00	3.10
2509	8823	5.966742	ATTTCAGTTTAGCAAGTTCTCCC	57.033	39.130	0.00	0.00	0.00	4.30
2511	8825	4.273148	TCAGTTTAGCAAGTTCTCCCTC	57.727	45.455	0.00	0.00	0.00	4.30
2534	8848	9.968743	CCTCTGTAAACAAATATAAGACGTTTC	57.031	33.333	0.00	0.00	32.42	2.78

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
605	4239	6.483307	TGTTATAGGCATGTGCAATAGTTCTC	59.517	38.462	7.36	0.00	44.36	2.87
659	4294	6.367969	GCCGTTTCTCTATACAAAACAGAAGA	59.632	38.462	0.00	0.00	33.51	2.87
665	4300	6.741358	GTGATTGCCGTTTCTCTATACAAAAC	59.259	38.462	0.00	0.00	0.00	2.43
671	4306	5.339008	AGTGTGATTGCCGTTTCTCTATA	57.661	39.130	0.00	0.00	0.00	1.31
681	4316	2.223688	TGTTTTTGGAGTGTGATTGCCG	60.224	45.455	0.00	0.00	0.00	5.69
684	4319	6.672836	GCAGTTTTGTTTTTGGAGTGTGATTG	60.673	38.462	0.00	0.00	0.00	2.67
693	4328	6.463995	AGATGTAGCAGTTTTGTTTTTGGA	57.536	33.333	0.00	0.00	0.00	3.53
694	4329	7.199766	TGTAGATGTAGCAGTTTTGTTTTTGG	58.800	34.615	0.00	0.00	0.00	3.28
706	4534	8.932945	TCATAGAGTTTTTGTAGATGTAGCAG	57.067	34.615	0.00	0.00	0.00	4.24
729	4557	9.987272	CTTACCTATGTGATCATGTAATCTTCA	57.013	33.333	0.00	0.00	35.70	3.02
741	4627	8.494016	AAGCTACAAAACTTACCTATGTGATC	57.506	34.615	0.00	0.00	0.00	2.92
784	4671	6.051074	AGAAAACATTTTTGGAGGAGCTTTG	58.949	36.000	0.00	0.00	0.00	2.77
825	5128	5.675538	AGTAACTCATGATGCCTACCTTTC	58.324	41.667	0.00	0.00	0.00	2.62
849	5153	4.013050	GTTTGGTACTCCTAGGTACTCGT	58.987	47.826	9.08	2.56	41.07	4.18
850	5154	4.012374	TGTTTGGTACTCCTAGGTACTCG	58.988	47.826	9.08	0.00	41.07	4.18
851	5155	5.990120	TTGTTTGGTACTCCTAGGTACTC	57.010	43.478	9.08	0.67	41.07	2.59
852	5156	6.070366	GGATTTGTTTGGTACTCCTAGGTACT	60.070	42.308	9.08	0.00	41.07	2.73
853	5157	6.111382	GGATTTGTTTGGTACTCCTAGGTAC	58.889	44.000	9.08	4.80	40.71	3.34
854	5158	5.786457	TGGATTTGTTTGGTACTCCTAGGTA	59.214	40.000	9.08	0.00	34.23	3.08
1072	5429	2.183555	GCCTTTGCTGATGCTGGC	59.816	61.111	0.00	0.00	40.78	4.85
1117	5474	3.260483	CTCGAGCATGACGCAGCC	61.260	66.667	0.00	0.00	46.13	4.85
1411	5794	4.383850	AACAAGCTTTACATGTGTGCAA	57.616	36.364	9.11	0.00	28.80	4.08
1420	6743	6.711277	ACAGATCTCCATAACAAGCTTTACA	58.289	36.000	0.00	0.00	0.00	2.41
1842	8073	1.338484	TGAGAGTGGCAAGCATCTGAC	60.338	52.381	0.00	0.00	0.00	3.51
1848	8079	2.290450	TGATGAATGAGAGTGGCAAGCA	60.290	45.455	0.00	0.00	0.00	3.91
1886	8131	6.700960	CACTAGCAGGTCTCTAGAATTTCATG	59.299	42.308	4.27	0.00	37.53	3.07
1890	8135	7.344352	AGAATCACTAGCAGGTCTCTAGAATTT	59.656	37.037	4.27	0.00	37.53	1.82
1917	8162	5.189180	AGTCATCATTTTACAGGGAAGAGC	58.811	41.667	0.00	0.00	0.00	4.09
2024	8280	3.744660	AGCAAATCAAAGTCGAAGGAGT	58.255	40.909	0.00	0.00	0.00	3.85
2052	8340	9.121658	CATCAAAGTCCTATACAGTGTCTACTA	57.878	37.037	0.00	0.00	34.74	1.82
2087	8399	2.542178	GTGCAGTACAACACGATCAACA	59.458	45.455	0.00	0.00	0.00	3.33
2089	8401	2.799978	CAGTGCAGTACAACACGATCAA	59.200	45.455	11.29	0.00	41.72	2.57
2090	8402	2.403259	CAGTGCAGTACAACACGATCA	58.597	47.619	11.29	0.00	41.72	2.92
2091	8403	1.126846	GCAGTGCAGTACAACACGATC	59.873	52.381	11.09	3.41	41.72	3.69
2092	8404	1.148310	GCAGTGCAGTACAACACGAT	58.852	50.000	11.09	0.00	41.72	3.73
2093	8405	0.179097	TGCAGTGCAGTACAACACGA	60.179	50.000	15.37	0.00	41.72	4.35
2094	8406	0.042188	GTGCAGTGCAGTACAACACG	60.042	55.000	20.42	8.42	40.08	4.49
2095	8407	1.003545	CAGTGCAGTGCAGTACAACAC	60.004	52.381	24.64	7.54	40.54	3.32
2096	8408	1.298602	CAGTGCAGTGCAGTACAACA	58.701	50.000	24.64	0.00	40.54	3.33
2097	8409	0.040958	GCAGTGCAGTGCAGTACAAC	60.041	55.000	35.84	9.06	40.54	3.32
2098	8410	2.320215	GCAGTGCAGTGCAGTACAA	58.680	52.632	35.84	0.00	40.54	2.41
2099	8411	4.047834	GCAGTGCAGTGCAGTACA	57.952	55.556	35.84	0.00	40.54	2.90
2109	8421	1.981951	TTCCACACCTCTGCAGTGCA	61.982	55.000	18.58	18.58	38.87	4.57
2110	8422	0.819259	TTTCCACACCTCTGCAGTGC	60.819	55.000	14.67	8.58	38.87	4.40
2111	8423	0.947244	GTTTCCACACCTCTGCAGTG	59.053	55.000	14.67	11.58	41.15	3.66
2112	8424	0.546122	TGTTTCCACACCTCTGCAGT	59.454	50.000	14.67	0.00	0.00	4.40
2113	8425	1.233019	CTGTTTCCACACCTCTGCAG	58.767	55.000	7.63	7.63	0.00	4.41
2114	8426	0.546122	ACTGTTTCCACACCTCTGCA	59.454	50.000	0.00	0.00	0.00	4.41
2115	8427	1.202698	AGACTGTTTCCACACCTCTGC	60.203	52.381	0.00	0.00	0.00	4.26
2116	8428	2.918712	AGACTGTTTCCACACCTCTG	57.081	50.000	0.00	0.00	0.00	3.35
2117	8429	3.515901	GGATAGACTGTTTCCACACCTCT	59.484	47.826	0.00	0.00	0.00	3.69
2118	8430	3.515901	AGGATAGACTGTTTCCACACCTC	59.484	47.826	7.74	0.00	31.65	3.85
2134	8446	8.293867	TGGACAACGAAATTTGTTTTAGGATAG	58.706	33.333	0.00	0.00	39.88	2.08
2153	8465	1.728971	CTCGTTGATGAGCTGGACAAC	59.271	52.381	13.18	13.18	39.08	3.32
2164	8476	1.229428	ACAGCCACAACTCGTTGATG	58.771	50.000	16.00	10.06	42.93	3.07
2171	8483	4.290155	CACAATAACAACAGCCACAACTC	58.710	43.478	0.00	0.00	0.00	3.01
2198	8510	6.442885	AGCTCAGTGGGATCATATGATATTGA	59.557	38.462	18.19	13.38	34.37	2.57
2199	8511	6.539103	CAGCTCAGTGGGATCATATGATATTG	59.461	42.308	18.19	10.05	34.37	1.90
2200	8512	6.442885	TCAGCTCAGTGGGATCATATGATATT	59.557	38.462	18.19	0.00	34.37	1.28
2201	8513	5.962641	TCAGCTCAGTGGGATCATATGATAT	59.037	40.000	18.19	0.00	34.37	1.63
2202	8514	5.336102	TCAGCTCAGTGGGATCATATGATA	58.664	41.667	18.19	0.16	34.37	2.15
2203	8515	4.165760	TCAGCTCAGTGGGATCATATGAT	58.834	43.478	18.21	18.21	37.51	2.45
2221	8533	7.465245	GCAGTCTTGACACTTCTTATATTCAGC	60.465	40.741	3.49	0.00	0.00	4.26
2284	8598	7.203910	AGTCTGATTATCATACTTCGGTCAAC	58.796	38.462	7.33	0.00	30.86	3.18
2380	8694	5.475719	TCTGTTCGGAATCACGTCTTATTT	58.524	37.500	0.00	0.00	34.94	1.40
2446	8760	7.064016	GTGTCTCTGTCTTTTCCTGTTATGATC	59.936	40.741	0.00	0.00	0.00	2.92
2456	8770	6.761714	TGAAAACTAGTGTCTCTGTCTTTTCC	59.238	38.462	0.00	0.00	31.07	3.13

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.