Multiple sequence alignment - TraesCS3D01G390600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G390600 chr3D 100.000 3944 0 0 1 3944 505780743 505776800 0.000000e+00 7284.0
1 TraesCS3D01G390600 chr3D 82.158 695 58 30 735 1409 505982741 505982093 1.610000e-148 536.0
2 TraesCS3D01G390600 chr3D 90.296 371 25 3 1065 1429 505999259 505998894 3.570000e-130 475.0
3 TraesCS3D01G390600 chr3D 86.547 446 24 13 982 1409 505795468 505795041 3.590000e-125 459.0
4 TraesCS3D01G390600 chr3D 85.437 103 10 3 2600 2701 505981825 505981727 6.970000e-18 102.0
5 TraesCS3D01G390600 chr3D 82.031 128 16 7 932 1058 505999414 505999293 6.970000e-18 102.0
6 TraesCS3D01G390600 chr3D 85.870 92 8 3 2611 2701 505998118 505998031 4.200000e-15 93.5
7 TraesCS3D01G390600 chr3B 92.260 1602 82 18 637 2223 667645309 667643735 0.000000e+00 2233.0
8 TraesCS3D01G390600 chr3B 93.741 1470 72 12 2486 3944 667643728 667642268 0.000000e+00 2187.0
9 TraesCS3D01G390600 chr3B 82.861 706 52 31 732 1416 667681637 667680980 1.590000e-158 569.0
10 TraesCS3D01G390600 chr3B 87.844 436 26 13 1001 1409 667709474 667709039 1.650000e-133 486.0
11 TraesCS3D01G390600 chr3B 96.992 266 5 3 2228 2491 201497519 201497255 1.010000e-120 444.0
12 TraesCS3D01G390600 chr3B 85.455 110 11 3 2593 2701 667708008 667707903 4.170000e-20 110.0
13 TraesCS3D01G390600 chr3A 91.007 1390 80 23 853 2227 644611045 644609686 0.000000e+00 1832.0
14 TraesCS3D01G390600 chr3A 90.647 1112 71 13 2554 3642 644609322 644608221 0.000000e+00 1447.0
15 TraesCS3D01G390600 chr3A 88.225 552 41 13 246 787 644611933 644611396 4.300000e-179 638.0
16 TraesCS3D01G390600 chr3A 82.521 698 56 34 732 1409 644623781 644623130 1.600000e-153 553.0
17 TraesCS3D01G390600 chr3A 84.692 503 36 22 948 1415 644667699 644667203 7.720000e-127 464.0
18 TraesCS3D01G390600 chr3A 94.000 150 8 1 25 174 644612079 644611931 3.970000e-55 226.0
19 TraesCS3D01G390600 chr3A 84.426 122 19 0 2821 2942 644623076 644622955 1.920000e-23 121.0
20 TraesCS3D01G390600 chr3A 91.765 85 7 0 2486 2570 644609683 644609599 6.920000e-23 119.0
21 TraesCS3D01G390600 chr3A 87.356 87 10 1 3675 3761 494725307 494725222 9.020000e-17 99.0
22 TraesCS3D01G390600 chr3A 84.466 103 11 3 2600 2701 644666912 644666814 3.240000e-16 97.1
23 TraesCS3D01G390600 chr3A 85.366 82 7 2 529 610 109317913 109317837 3.270000e-11 80.5
24 TraesCS3D01G390600 chr3A 96.000 50 0 2 771 818 644611091 644611042 3.270000e-11 80.5
25 TraesCS3D01G390600 chrUn 98.113 265 2 2 2230 2491 65423866 65423602 3.590000e-125 459.0
26 TraesCS3D01G390600 chrUn 86.538 104 8 3 514 616 412734161 412734259 4.170000e-20 110.0
27 TraesCS3D01G390600 chr2D 97.753 267 3 2 2228 2491 628291992 628292258 1.290000e-124 457.0
28 TraesCS3D01G390600 chr2D 98.450 258 2 2 2236 2491 359630385 359630642 1.670000e-123 453.0
29 TraesCS3D01G390600 chr2D 98.062 258 2 3 2236 2491 643857850 643857594 2.800000e-121 446.0
30 TraesCS3D01G390600 chr2D 90.643 171 13 3 618 787 352631155 352631323 1.430000e-54 224.0
31 TraesCS3D01G390600 chr2D 91.089 101 5 3 514 614 483870625 483870529 2.470000e-27 134.0
32 TraesCS3D01G390600 chr1A 97.744 266 4 2 2228 2491 554474074 554474339 1.290000e-124 457.0
33 TraesCS3D01G390600 chr1A 85.263 95 12 2 3668 3761 255486667 255486760 3.240000e-16 97.1
34 TraesCS3D01G390600 chr4D 98.069 259 2 3 2234 2491 50994153 50994409 7.770000e-122 448.0
35 TraesCS3D01G390600 chr2B 97.004 267 4 3 2228 2491 474939368 474939103 2.800000e-121 446.0
36 TraesCS3D01G390600 chr2B 86.905 84 7 2 518 600 741918220 741918140 1.510000e-14 91.6
37 TraesCS3D01G390600 chr2A 97.004 267 4 3 2228 2491 588080895 588081160 2.800000e-121 446.0
38 TraesCS3D01G390600 chr1D 82.166 314 45 8 1258 1570 286389461 286389764 3.910000e-65 259.0
39 TraesCS3D01G390600 chr1D 84.252 254 33 7 2486 2736 328845216 328844967 1.420000e-59 241.0
40 TraesCS3D01G390600 chr1D 83.333 102 11 4 514 614 307698367 307698271 5.430000e-14 89.8
41 TraesCS3D01G390600 chr1D 96.970 33 1 0 3729 3761 433375648 433375616 5.510000e-04 56.5
42 TraesCS3D01G390600 chr6D 89.474 95 8 2 2602 2694 429742769 429742675 6.920000e-23 119.0
43 TraesCS3D01G390600 chr4A 91.765 85 4 2 514 598 648945759 648945840 8.960000e-22 115.0
44 TraesCS3D01G390600 chr4A 87.629 97 9 1 514 610 620646336 620646429 4.170000e-20 110.0
45 TraesCS3D01G390600 chr7B 89.333 75 6 2 3691 3765 375386655 375386583 4.200000e-15 93.5
46 TraesCS3D01G390600 chr7A 89.333 75 6 2 3691 3765 428916416 428916344 4.200000e-15 93.5
47 TraesCS3D01G390600 chr5A 92.857 42 3 0 3720 3761 703404967 703405008 1.180000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G390600 chr3D 505776800 505780743 3943 True 7284.00 7284 100.000000 1 3944 1 chr3D.!!$R1 3943
1 TraesCS3D01G390600 chr3D 505981727 505982741 1014 True 319.00 536 83.797500 735 2701 2 chr3D.!!$R3 1966
2 TraesCS3D01G390600 chr3D 505998031 505999414 1383 True 223.50 475 86.065667 932 2701 3 chr3D.!!$R4 1769
3 TraesCS3D01G390600 chr3B 667642268 667645309 3041 True 2210.00 2233 93.000500 637 3944 2 chr3B.!!$R3 3307
4 TraesCS3D01G390600 chr3B 667680980 667681637 657 True 569.00 569 82.861000 732 1416 1 chr3B.!!$R2 684
5 TraesCS3D01G390600 chr3B 667707903 667709474 1571 True 298.00 486 86.649500 1001 2701 2 chr3B.!!$R4 1700
6 TraesCS3D01G390600 chr3A 644608221 644612079 3858 True 723.75 1832 91.940667 25 3642 6 chr3A.!!$R3 3617
7 TraesCS3D01G390600 chr3A 644622955 644623781 826 True 337.00 553 83.473500 732 2942 2 chr3A.!!$R4 2210
8 TraesCS3D01G390600 chr3A 644666814 644667699 885 True 280.55 464 84.579000 948 2701 2 chr3A.!!$R5 1753

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
208 209 0.039472 ATGCAGCCCCAACATGTGTA 59.961 50.0 0.00 0.0 0.00 2.90 F
1466 1851 0.095935 CAGTTTTGGAGCGATGCGAG 59.904 55.0 0.00 0.0 0.00 5.03 F
1926 2335 0.311790 TTCGCGGTGAGTTACGAACT 59.688 50.0 6.13 0.0 46.38 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1928 2337 0.321653 GAGTTGGTGAGGGCAATCGT 60.322 55.0 0.00 0.0 0.00 3.73 R
2306 3158 0.039617 TTGAATTCGTTGCCCAAGCG 60.040 50.0 0.04 0.0 44.31 4.68 R
3253 4591 0.536006 AGGTCTCAGGCACTTGCAAC 60.536 55.0 3.15 0.0 44.36 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.303462 AGCAGCTGGAGTGAGATCT 57.697 52.632 17.12 0.00 0.00 2.75
19 20 2.450867 AGCAGCTGGAGTGAGATCTA 57.549 50.000 17.12 0.00 0.00 1.98
20 21 2.031120 AGCAGCTGGAGTGAGATCTAC 58.969 52.381 17.12 0.00 0.00 2.59
21 22 2.031120 GCAGCTGGAGTGAGATCTACT 58.969 52.381 17.12 0.00 0.00 2.57
22 23 2.034558 GCAGCTGGAGTGAGATCTACTC 59.965 54.545 17.12 17.32 45.11 2.59
62 63 5.233476 TCACTAAAGACGTGTTAGCACAAAG 59.767 40.000 10.49 0.00 45.50 2.77
63 64 3.334272 AAAGACGTGTTAGCACAAAGC 57.666 42.857 10.49 0.00 45.50 3.51
132 133 3.509967 ACACTCGTTCAGACCATGATGTA 59.490 43.478 0.00 0.00 37.89 2.29
154 155 8.760103 TGTAGAGTAACAAATTATTACGCACA 57.240 30.769 14.51 13.14 37.56 4.57
166 167 3.472283 TTACGCACACACCCTCTTTTA 57.528 42.857 0.00 0.00 0.00 1.52
167 168 2.561478 ACGCACACACCCTCTTTTAT 57.439 45.000 0.00 0.00 0.00 1.40
170 171 3.634910 ACGCACACACCCTCTTTTATTTT 59.365 39.130 0.00 0.00 0.00 1.82
171 172 4.098807 ACGCACACACCCTCTTTTATTTTT 59.901 37.500 0.00 0.00 0.00 1.94
172 173 5.299782 ACGCACACACCCTCTTTTATTTTTA 59.700 36.000 0.00 0.00 0.00 1.52
173 174 6.183360 ACGCACACACCCTCTTTTATTTTTAA 60.183 34.615 0.00 0.00 0.00 1.52
174 175 6.866248 CGCACACACCCTCTTTTATTTTTAAT 59.134 34.615 0.00 0.00 0.00 1.40
175 176 7.383843 CGCACACACCCTCTTTTATTTTTAATT 59.616 33.333 0.00 0.00 0.00 1.40
176 177 9.051679 GCACACACCCTCTTTTATTTTTAATTT 57.948 29.630 0.00 0.00 0.00 1.82
196 197 7.895975 AATTTAGAAGAAAGAAAATGCAGCC 57.104 32.000 0.00 0.00 0.00 4.85
197 198 3.949842 AGAAGAAAGAAAATGCAGCCC 57.050 42.857 0.00 0.00 0.00 5.19
198 199 2.564504 AGAAGAAAGAAAATGCAGCCCC 59.435 45.455 0.00 0.00 0.00 5.80
199 200 2.014010 AGAAAGAAAATGCAGCCCCA 57.986 45.000 0.00 0.00 0.00 4.96
200 201 2.328319 AGAAAGAAAATGCAGCCCCAA 58.672 42.857 0.00 0.00 0.00 4.12
201 202 2.037641 AGAAAGAAAATGCAGCCCCAAC 59.962 45.455 0.00 0.00 0.00 3.77
202 203 1.422531 AAGAAAATGCAGCCCCAACA 58.577 45.000 0.00 0.00 0.00 3.33
203 204 1.648116 AGAAAATGCAGCCCCAACAT 58.352 45.000 0.00 0.00 0.00 2.71
204 205 1.276989 AGAAAATGCAGCCCCAACATG 59.723 47.619 0.00 0.00 0.00 3.21
205 206 1.002315 GAAAATGCAGCCCCAACATGT 59.998 47.619 0.00 0.00 0.00 3.21
206 207 0.322322 AAATGCAGCCCCAACATGTG 59.678 50.000 0.00 0.00 0.00 3.21
207 208 0.832983 AATGCAGCCCCAACATGTGT 60.833 50.000 0.00 0.00 0.00 3.72
208 209 0.039472 ATGCAGCCCCAACATGTGTA 59.961 50.000 0.00 0.00 0.00 2.90
209 210 0.178978 TGCAGCCCCAACATGTGTAA 60.179 50.000 0.00 0.00 0.00 2.41
210 211 1.185315 GCAGCCCCAACATGTGTAAT 58.815 50.000 0.00 0.00 0.00 1.89
211 212 2.291217 TGCAGCCCCAACATGTGTAATA 60.291 45.455 0.00 0.00 0.00 0.98
212 213 2.358898 GCAGCCCCAACATGTGTAATAG 59.641 50.000 0.00 0.00 0.00 1.73
213 214 3.620488 CAGCCCCAACATGTGTAATAGT 58.380 45.455 0.00 0.00 0.00 2.12
214 215 3.627577 CAGCCCCAACATGTGTAATAGTC 59.372 47.826 0.00 0.00 0.00 2.59
215 216 2.612212 GCCCCAACATGTGTAATAGTCG 59.388 50.000 0.00 0.00 0.00 4.18
216 217 3.869065 CCCCAACATGTGTAATAGTCGT 58.131 45.455 0.00 0.00 0.00 4.34
217 218 4.258543 CCCCAACATGTGTAATAGTCGTT 58.741 43.478 0.00 0.00 0.00 3.85
218 219 4.331717 CCCCAACATGTGTAATAGTCGTTC 59.668 45.833 0.00 0.00 0.00 3.95
219 220 5.175859 CCCAACATGTGTAATAGTCGTTCT 58.824 41.667 0.00 0.00 0.00 3.01
220 221 5.642063 CCCAACATGTGTAATAGTCGTTCTT 59.358 40.000 0.00 0.00 0.00 2.52
221 222 6.814644 CCCAACATGTGTAATAGTCGTTCTTA 59.185 38.462 0.00 0.00 0.00 2.10
222 223 7.332430 CCCAACATGTGTAATAGTCGTTCTTAA 59.668 37.037 0.00 0.00 0.00 1.85
223 224 8.380644 CCAACATGTGTAATAGTCGTTCTTAAG 58.619 37.037 0.00 0.00 0.00 1.85
224 225 8.922676 CAACATGTGTAATAGTCGTTCTTAAGT 58.077 33.333 0.00 0.00 0.00 2.24
225 226 9.485206 AACATGTGTAATAGTCGTTCTTAAGTT 57.515 29.630 0.00 0.00 0.00 2.66
226 227 8.922676 ACATGTGTAATAGTCGTTCTTAAGTTG 58.077 33.333 0.00 0.00 0.00 3.16
227 228 8.922676 CATGTGTAATAGTCGTTCTTAAGTTGT 58.077 33.333 1.63 0.00 0.00 3.32
228 229 8.876275 TGTGTAATAGTCGTTCTTAAGTTGTT 57.124 30.769 1.63 0.00 0.00 2.83
229 230 9.316730 TGTGTAATAGTCGTTCTTAAGTTGTTT 57.683 29.630 1.63 0.00 0.00 2.83
230 231 9.577003 GTGTAATAGTCGTTCTTAAGTTGTTTG 57.423 33.333 1.63 0.00 0.00 2.93
231 232 9.316730 TGTAATAGTCGTTCTTAAGTTGTTTGT 57.683 29.630 1.63 0.00 0.00 2.83
235 236 9.754382 ATAGTCGTTCTTAAGTTGTTTGTAAGA 57.246 29.630 1.63 0.00 33.18 2.10
236 237 8.128016 AGTCGTTCTTAAGTTGTTTGTAAGAG 57.872 34.615 1.63 0.00 35.77 2.85
237 238 7.977853 AGTCGTTCTTAAGTTGTTTGTAAGAGA 59.022 33.333 1.63 0.00 35.77 3.10
238 239 8.762426 GTCGTTCTTAAGTTGTTTGTAAGAGAT 58.238 33.333 1.63 0.00 35.77 2.75
239 240 8.761497 TCGTTCTTAAGTTGTTTGTAAGAGATG 58.239 33.333 1.63 0.00 35.77 2.90
240 241 8.548721 CGTTCTTAAGTTGTTTGTAAGAGATGT 58.451 33.333 1.63 0.00 35.77 3.06
241 242 9.865484 GTTCTTAAGTTGTTTGTAAGAGATGTC 57.135 33.333 1.63 0.00 35.77 3.06
242 243 8.294341 TCTTAAGTTGTTTGTAAGAGATGTCG 57.706 34.615 1.63 0.00 31.75 4.35
243 244 4.992381 AGTTGTTTGTAAGAGATGTCGC 57.008 40.909 0.00 0.00 0.00 5.19
244 245 4.377021 AGTTGTTTGTAAGAGATGTCGCA 58.623 39.130 0.00 0.00 0.00 5.10
253 254 8.492673 TTGTAAGAGATGTCGCATAAGAATTT 57.507 30.769 0.00 0.00 0.00 1.82
264 265 7.703197 TGTCGCATAAGAATTTTAGTGATACGA 59.297 33.333 0.00 0.00 0.00 3.43
299 300 5.055144 GGCGGAGGTAGGAATAACTTTTAG 58.945 45.833 0.00 0.00 0.00 1.85
307 312 5.968387 AGGAATAACTTTTAGATGCGACG 57.032 39.130 0.00 0.00 0.00 5.12
324 329 1.569653 ACGGAGTTTAGGAAGGAGGG 58.430 55.000 0.00 0.00 37.78 4.30
341 346 3.245052 GGAGGGAACTGCTTATATGCCAT 60.245 47.826 8.04 0.00 46.74 4.40
345 350 5.251468 AGGGAACTGCTTATATGCCATCATA 59.749 40.000 8.04 0.00 41.13 2.15
361 366 5.988561 GCCATCATACAAAGGTTCACAAAAA 59.011 36.000 0.00 0.00 0.00 1.94
374 379 7.883229 GGTTCACAAAAACCCTAAATACATG 57.117 36.000 0.00 0.00 42.46 3.21
379 385 6.866248 CACAAAAACCCTAAATACATGTCACC 59.134 38.462 0.00 0.00 0.00 4.02
403 409 6.454981 CCACAACAAATTTCGTTCCAAAAGTC 60.455 38.462 0.00 0.00 0.00 3.01
407 413 6.270064 ACAAATTTCGTTCCAAAAGTCGAAT 58.730 32.000 0.00 0.00 40.87 3.34
408 414 6.416750 ACAAATTTCGTTCCAAAAGTCGAATC 59.583 34.615 0.00 0.00 40.87 2.52
409 415 4.477302 TTTCGTTCCAAAAGTCGAATCC 57.523 40.909 0.00 0.00 40.87 3.01
410 416 3.114668 TCGTTCCAAAAGTCGAATCCA 57.885 42.857 0.00 0.00 0.00 3.41
411 417 3.468770 TCGTTCCAAAAGTCGAATCCAA 58.531 40.909 0.00 0.00 0.00 3.53
412 418 3.496884 TCGTTCCAAAAGTCGAATCCAAG 59.503 43.478 0.00 0.00 0.00 3.61
413 419 3.250040 CGTTCCAAAAGTCGAATCCAAGT 59.750 43.478 0.00 0.00 0.00 3.16
414 420 4.261031 CGTTCCAAAAGTCGAATCCAAGTT 60.261 41.667 0.00 0.00 0.00 2.66
415 421 5.212934 GTTCCAAAAGTCGAATCCAAGTTC 58.787 41.667 0.00 0.00 0.00 3.01
416 422 4.456535 TCCAAAAGTCGAATCCAAGTTCA 58.543 39.130 0.00 0.00 0.00 3.18
417 423 4.274950 TCCAAAAGTCGAATCCAAGTTCAC 59.725 41.667 0.00 0.00 0.00 3.18
444 450 7.280356 TCTAAATTATTTCCTCCCCTTCTTCG 58.720 38.462 0.00 0.00 0.00 3.79
506 512 4.233635 GCCGATCGCTGCTTGCTG 62.234 66.667 10.32 0.00 40.11 4.41
539 545 3.894427 TGCACCTTGAACCAACATGTATT 59.106 39.130 0.00 0.00 0.00 1.89
546 552 6.183360 CCTTGAACCAACATGTATTGAGGATC 60.183 42.308 0.00 2.05 0.00 3.36
559 565 2.969628 GAGGATCTTTTGCCTCTCGA 57.030 50.000 0.00 0.00 45.72 4.04
560 566 3.467374 GAGGATCTTTTGCCTCTCGAT 57.533 47.619 0.00 0.00 45.72 3.59
561 567 3.129871 GAGGATCTTTTGCCTCTCGATG 58.870 50.000 0.00 0.00 45.72 3.84
571 577 2.423892 TGCCTCTCGATGACTGTAACTC 59.576 50.000 0.00 0.00 0.00 3.01
582 588 8.568794 TCGATGACTGTAACTCTCTAAATATGG 58.431 37.037 0.00 0.00 0.00 2.74
602 608 9.560860 AATATGGAATAAAACTCTTTTTCCCCT 57.439 29.630 0.00 0.00 36.32 4.79
603 609 7.872061 ATGGAATAAAACTCTTTTTCCCCTT 57.128 32.000 0.00 0.00 36.32 3.95
670 676 5.410746 CGAACATAGCATGGCTGAAATAGAT 59.589 40.000 0.07 0.00 40.10 1.98
742 753 4.202111 ACGAAAATCACACTCCAAAAAGGG 60.202 41.667 0.00 0.00 38.24 3.95
748 759 3.129638 TCACACTCCAAAAAGGGTTTTCG 59.870 43.478 0.00 0.00 34.64 3.46
959 1293 1.153409 CGAGGAAGCAGCAGCAGAT 60.153 57.895 3.17 0.00 45.49 2.90
1466 1851 0.095935 CAGTTTTGGAGCGATGCGAG 59.904 55.000 0.00 0.00 0.00 5.03
1493 1878 4.862574 GTGGGTTTTGTTCTCTGTTGTTTC 59.137 41.667 0.00 0.00 0.00 2.78
1541 1926 8.050930 GGGGATGATTAGAAGTAAACTTTGGTA 58.949 37.037 0.00 0.00 36.11 3.25
1542 1927 9.457436 GGGATGATTAGAAGTAAACTTTGGTAA 57.543 33.333 0.00 0.00 36.11 2.85
1581 1966 5.120674 GCTTGGTTAAATTGAGGTTTCATGC 59.879 40.000 0.00 0.00 32.27 4.06
1681 2071 6.013466 AGGTTATTGCAAAATGAGGGATTTGT 60.013 34.615 1.71 0.00 38.48 2.83
1697 2087 7.179269 AGGGATTTGTAACCAGTATTAAGCAA 58.821 34.615 0.00 0.00 0.00 3.91
1745 2136 4.722526 TCATCCCTGTTTTCCTCTGAAA 57.277 40.909 0.00 0.00 38.69 2.69
1746 2137 5.060427 TCATCCCTGTTTTCCTCTGAAAA 57.940 39.130 0.00 0.00 45.72 2.29
1846 2240 9.283420 CTACGATAGATCTGCTGTGTTTATATG 57.717 37.037 5.18 0.00 41.38 1.78
1847 2241 7.886338 ACGATAGATCTGCTGTGTTTATATGA 58.114 34.615 5.18 0.00 41.38 2.15
1848 2242 8.026026 ACGATAGATCTGCTGTGTTTATATGAG 58.974 37.037 5.18 0.00 41.38 2.90
1849 2243 8.026026 CGATAGATCTGCTGTGTTTATATGAGT 58.974 37.037 5.18 0.00 39.76 3.41
1850 2244 9.703892 GATAGATCTGCTGTGTTTATATGAGTT 57.296 33.333 5.18 0.00 0.00 3.01
1851 2245 7.783090 AGATCTGCTGTGTTTATATGAGTTG 57.217 36.000 0.00 0.00 0.00 3.16
1852 2246 5.801350 TCTGCTGTGTTTATATGAGTTGC 57.199 39.130 0.00 0.00 0.00 4.17
1853 2247 4.635765 TCTGCTGTGTTTATATGAGTTGCC 59.364 41.667 0.00 0.00 0.00 4.52
1877 2286 3.004315 AGTTGGTGTACAAATTTGAGGCG 59.996 43.478 24.64 0.00 41.58 5.52
1925 2334 1.319669 GATTCGCGGTGAGTTACGAAC 59.680 52.381 6.13 0.00 46.02 3.95
1926 2335 0.311790 TTCGCGGTGAGTTACGAACT 59.688 50.000 6.13 0.00 46.38 3.01
1927 2336 0.311790 TCGCGGTGAGTTACGAACTT 59.688 50.000 6.13 0.00 43.03 2.66
1928 2337 1.535028 TCGCGGTGAGTTACGAACTTA 59.465 47.619 6.13 0.00 43.03 2.24
1930 2339 1.645751 GCGGTGAGTTACGAACTTACG 59.354 52.381 12.79 12.03 45.82 3.18
1931 2340 2.665519 GCGGTGAGTTACGAACTTACGA 60.666 50.000 12.79 0.00 45.82 3.43
2137 2790 3.057806 CCTTTTCGGTTGTTGTGTATCCC 60.058 47.826 0.00 0.00 0.00 3.85
2223 3075 8.986847 CATAGAATGGAGAAAGCAATACTAGTG 58.013 37.037 5.39 0.00 0.00 2.74
2228 3080 6.530120 TGGAGAAAGCAATACTAGTGTTCAA 58.470 36.000 5.39 0.00 0.00 2.69
2229 3081 6.650807 TGGAGAAAGCAATACTAGTGTTCAAG 59.349 38.462 5.39 0.00 0.00 3.02
2230 3082 6.092807 GGAGAAAGCAATACTAGTGTTCAAGG 59.907 42.308 5.39 0.00 0.00 3.61
2232 3084 4.286297 AGCAATACTAGTGTTCAAGGCA 57.714 40.909 5.39 0.00 0.00 4.75
2233 3085 4.651778 AGCAATACTAGTGTTCAAGGCAA 58.348 39.130 5.39 0.00 0.00 4.52
2234 3086 5.070001 AGCAATACTAGTGTTCAAGGCAAA 58.930 37.500 5.39 0.00 0.00 3.68
2236 3088 6.209391 AGCAATACTAGTGTTCAAGGCAAAAT 59.791 34.615 5.39 0.00 0.00 1.82
2237 3089 6.308766 GCAATACTAGTGTTCAAGGCAAAATG 59.691 38.462 5.39 0.00 0.00 2.32
2238 3090 7.370383 CAATACTAGTGTTCAAGGCAAAATGT 58.630 34.615 5.39 0.00 0.00 2.71
2239 3091 8.511321 CAATACTAGTGTTCAAGGCAAAATGTA 58.489 33.333 5.39 0.00 0.00 2.29
2240 3092 8.807948 ATACTAGTGTTCAAGGCAAAATGTAT 57.192 30.769 5.39 0.00 0.00 2.29
2241 3093 9.899661 ATACTAGTGTTCAAGGCAAAATGTATA 57.100 29.630 5.39 0.00 0.00 1.47
2243 3095 8.677300 ACTAGTGTTCAAGGCAAAATGTATATG 58.323 33.333 0.00 0.00 0.00 1.78
2244 3096 7.701539 AGTGTTCAAGGCAAAATGTATATGA 57.298 32.000 0.00 0.00 0.00 2.15
2245 3097 8.121305 AGTGTTCAAGGCAAAATGTATATGAA 57.879 30.769 0.00 0.00 0.00 2.57
2246 3098 8.584157 AGTGTTCAAGGCAAAATGTATATGAAA 58.416 29.630 0.00 0.00 0.00 2.69
2248 3100 9.770097 TGTTCAAGGCAAAATGTATATGAAAAA 57.230 25.926 0.00 0.00 0.00 1.94
2271 3123 7.698836 AAAAGATTGATTGAACTTTCCAACG 57.301 32.000 0.00 0.00 32.52 4.10
2272 3124 5.376854 AGATTGATTGAACTTTCCAACGG 57.623 39.130 0.00 0.00 0.00 4.44
2273 3125 5.070001 AGATTGATTGAACTTTCCAACGGA 58.930 37.500 0.00 0.00 0.00 4.69
2274 3126 4.561735 TTGATTGAACTTTCCAACGGAC 57.438 40.909 0.00 0.00 0.00 4.79
2275 3127 3.815809 TGATTGAACTTTCCAACGGACT 58.184 40.909 0.00 0.00 0.00 3.85
2278 3130 3.485463 TGAACTTTCCAACGGACTCAT 57.515 42.857 0.00 0.00 0.00 2.90
2279 3131 3.815809 TGAACTTTCCAACGGACTCATT 58.184 40.909 0.00 0.00 0.00 2.57
2280 3132 3.813166 TGAACTTTCCAACGGACTCATTC 59.187 43.478 0.00 0.00 0.00 2.67
2282 3134 2.105821 ACTTTCCAACGGACTCATTCCA 59.894 45.455 0.00 0.00 46.29 3.53
2283 3135 3.244911 ACTTTCCAACGGACTCATTCCAT 60.245 43.478 0.00 0.00 46.29 3.41
2299 3151 7.864108 TCATTCCATGAGTAAACGATTGAAT 57.136 32.000 0.00 0.00 33.59 2.57
2301 3153 6.435430 TTCCATGAGTAAACGATTGAATGG 57.565 37.500 0.00 0.00 35.66 3.16
2303 3155 4.881273 CCATGAGTAAACGATTGAATGGGA 59.119 41.667 0.00 0.00 31.61 4.37
2304 3156 5.532406 CCATGAGTAAACGATTGAATGGGAT 59.468 40.000 0.00 0.00 31.61 3.85
2305 3157 6.039717 CCATGAGTAAACGATTGAATGGGATT 59.960 38.462 0.00 0.00 31.61 3.01
2306 3158 6.677781 TGAGTAAACGATTGAATGGGATTC 57.322 37.500 0.00 0.00 39.70 2.52
2307 3159 5.293324 TGAGTAAACGATTGAATGGGATTCG 59.707 40.000 0.00 0.00 42.15 3.34
2308 3160 3.420839 AAACGATTGAATGGGATTCGC 57.579 42.857 0.00 0.00 42.15 4.70
2309 3161 2.332063 ACGATTGAATGGGATTCGCT 57.668 45.000 2.19 0.00 42.15 4.93
2310 3162 2.643551 ACGATTGAATGGGATTCGCTT 58.356 42.857 2.19 0.00 42.15 4.68
2312 3164 2.287188 CGATTGAATGGGATTCGCTTGG 60.287 50.000 2.19 0.00 42.15 3.61
2313 3165 1.473258 TTGAATGGGATTCGCTTGGG 58.527 50.000 2.19 0.00 42.15 4.12
2315 3167 1.000233 AATGGGATTCGCTTGGGCA 60.000 52.632 2.19 0.00 38.60 5.36
2318 3170 2.485122 GGATTCGCTTGGGCAACG 59.515 61.111 0.00 0.00 38.60 4.10
2319 3171 2.038269 GGATTCGCTTGGGCAACGA 61.038 57.895 0.00 0.00 38.60 3.85
2321 3173 4.073052 TTCGCTTGGGCAACGAAT 57.927 50.000 0.00 0.00 40.56 3.34
2323 3175 0.239879 TTCGCTTGGGCAACGAATTC 59.760 50.000 0.00 0.00 40.56 2.17
2324 3176 0.886938 TCGCTTGGGCAACGAATTCA 60.887 50.000 6.22 0.00 38.60 2.57
2327 3179 1.000274 GCTTGGGCAACGAATTCAAGT 60.000 47.619 6.22 0.00 37.65 3.16
2328 3180 2.922335 GCTTGGGCAACGAATTCAAGTC 60.922 50.000 6.22 0.00 37.65 3.01
2330 3182 1.202879 TGGGCAACGAATTCAAGTCCT 60.203 47.619 6.22 0.00 37.60 3.85
2331 3183 1.200020 GGGCAACGAATTCAAGTCCTG 59.800 52.381 6.22 0.00 37.60 3.86
2332 3184 1.200020 GGCAACGAATTCAAGTCCTGG 59.800 52.381 6.22 0.00 0.00 4.45
2334 3186 2.095718 GCAACGAATTCAAGTCCTGGTC 60.096 50.000 6.22 0.00 0.00 4.02
2335 3187 2.474410 ACGAATTCAAGTCCTGGTCC 57.526 50.000 6.22 0.00 0.00 4.46
2336 3188 1.003233 ACGAATTCAAGTCCTGGTCCC 59.997 52.381 6.22 0.00 0.00 4.46
2337 3189 1.679032 CGAATTCAAGTCCTGGTCCCC 60.679 57.143 6.22 0.00 0.00 4.81
2338 3190 1.636003 GAATTCAAGTCCTGGTCCCCT 59.364 52.381 0.00 0.00 0.00 4.79
2339 3191 1.760405 ATTCAAGTCCTGGTCCCCTT 58.240 50.000 0.00 0.00 0.00 3.95
2340 3192 1.529744 TTCAAGTCCTGGTCCCCTTT 58.470 50.000 0.00 0.00 0.00 3.11
2341 3193 1.529744 TCAAGTCCTGGTCCCCTTTT 58.470 50.000 0.00 0.00 0.00 2.27
2342 3194 1.423921 TCAAGTCCTGGTCCCCTTTTC 59.576 52.381 0.00 0.00 0.00 2.29
2343 3195 1.425448 CAAGTCCTGGTCCCCTTTTCT 59.575 52.381 0.00 0.00 0.00 2.52
2346 3198 1.279558 GTCCTGGTCCCCTTTTCTCTC 59.720 57.143 0.00 0.00 0.00 3.20
2347 3199 1.152271 TCCTGGTCCCCTTTTCTCTCT 59.848 52.381 0.00 0.00 0.00 3.10
2348 3200 1.988846 CCTGGTCCCCTTTTCTCTCTT 59.011 52.381 0.00 0.00 0.00 2.85
2349 3201 3.181399 TCCTGGTCCCCTTTTCTCTCTTA 60.181 47.826 0.00 0.00 0.00 2.10
2350 3202 3.783082 CCTGGTCCCCTTTTCTCTCTTAT 59.217 47.826 0.00 0.00 0.00 1.73
2351 3203 4.228438 CCTGGTCCCCTTTTCTCTCTTATT 59.772 45.833 0.00 0.00 0.00 1.40
2352 3204 5.179452 TGGTCCCCTTTTCTCTCTTATTG 57.821 43.478 0.00 0.00 0.00 1.90
2353 3205 4.849810 TGGTCCCCTTTTCTCTCTTATTGA 59.150 41.667 0.00 0.00 0.00 2.57
2354 3206 5.312178 TGGTCCCCTTTTCTCTCTTATTGAA 59.688 40.000 0.00 0.00 0.00 2.69
2355 3207 6.011628 TGGTCCCCTTTTCTCTCTTATTGAAT 60.012 38.462 0.00 0.00 0.00 2.57
2356 3208 6.892456 GGTCCCCTTTTCTCTCTTATTGAATT 59.108 38.462 0.00 0.00 0.00 2.17
2358 3210 9.462606 GTCCCCTTTTCTCTCTTATTGAATTAA 57.537 33.333 0.00 0.00 0.00 1.40
2359 3211 9.462606 TCCCCTTTTCTCTCTTATTGAATTAAC 57.537 33.333 0.00 0.00 0.00 2.01
2360 3212 9.467796 CCCCTTTTCTCTCTTATTGAATTAACT 57.532 33.333 0.00 0.00 0.00 2.24
2484 3366 9.778741 TGTGATAATTATGAGAACCAATCCTAC 57.221 33.333 1.78 0.00 0.00 3.18
2494 3376 8.603898 TGAGAACCAATCCTACAGTTCTATTA 57.396 34.615 4.37 0.00 46.68 0.98
2509 3391 8.971073 ACAGTTCTATTATTTGGGAAATCAAGG 58.029 33.333 0.00 0.00 32.38 3.61
2538 3420 5.048434 AGACAGGCAAATAAAAGAAGCAGAC 60.048 40.000 0.00 0.00 0.00 3.51
2576 3898 4.067896 ACAGAACATGTGACTTGGTCATC 58.932 43.478 17.26 4.17 44.63 2.92
2609 3932 3.072476 TCTTGGTAAGGGGAACTGTCTTG 59.928 47.826 0.00 0.00 0.00 3.02
2749 4072 2.378634 GCTACCCTGACCCCAGCAT 61.379 63.158 0.00 0.00 39.07 3.79
2817 4143 4.944962 TGTGAGATTGTATTTCCTTGCG 57.055 40.909 0.00 0.00 0.00 4.85
2834 4163 2.270923 TGCGAATGATGTACTGCTCAC 58.729 47.619 0.00 0.00 0.00 3.51
2949 4278 3.198417 TCAAACTATGCAGCTGATGGAGA 59.802 43.478 20.43 8.41 30.11 3.71
3117 4452 0.746659 AACTGACCACTGCTTTTGCC 59.253 50.000 0.00 0.00 46.87 4.52
3128 4463 1.066908 TGCTTTTGCCAAACTTCGGAG 59.933 47.619 0.00 0.00 46.87 4.63
3215 4553 3.900855 AGCATCAGAAGCTTGCCG 58.099 55.556 2.10 0.00 39.87 5.69
3222 4560 1.374758 AGAAGCTTGCCGTTCCTCG 60.375 57.895 2.10 0.00 39.52 4.63
3224 4562 1.901650 GAAGCTTGCCGTTCCTCGTG 61.902 60.000 2.10 0.00 37.94 4.35
3379 4717 8.485392 CCTTGGGTGGATTTGTTCAATTATAAT 58.515 33.333 0.00 0.00 0.00 1.28
3450 4788 5.890110 CTTGTATAGGACTTGCATGTACG 57.110 43.478 9.17 0.00 28.91 3.67
3558 4896 3.742369 GTGGCTGTTGAAATTGTGAATGG 59.258 43.478 0.00 0.00 0.00 3.16
3561 4899 4.923281 GGCTGTTGAAATTGTGAATGGTAC 59.077 41.667 0.00 0.00 0.00 3.34
3603 4941 5.276461 TCTGTGTAGCTTCAAGACTGAAA 57.724 39.130 0.00 0.00 41.05 2.69
3604 4942 5.670485 TCTGTGTAGCTTCAAGACTGAAAA 58.330 37.500 0.00 0.00 41.05 2.29
3605 4943 6.112734 TCTGTGTAGCTTCAAGACTGAAAAA 58.887 36.000 0.00 0.00 41.05 1.94
3606 4944 6.258727 TCTGTGTAGCTTCAAGACTGAAAAAG 59.741 38.462 0.00 0.00 41.05 2.27
3607 4945 5.296780 TGTGTAGCTTCAAGACTGAAAAAGG 59.703 40.000 0.00 0.00 41.05 3.11
3642 4984 8.028652 TCACATCACTAATTGGGTGTATCATA 57.971 34.615 11.35 0.00 36.25 2.15
3674 5016 4.023291 GGGCATGGGATCTCTTTAAAACA 58.977 43.478 0.00 0.00 0.00 2.83
3697 5039 7.509546 ACATACCACCTCTGTCCTAAAATATG 58.490 38.462 0.00 0.00 0.00 1.78
3858 5217 3.321648 TCCATCAGGCACGCTGGT 61.322 61.111 0.00 0.00 33.74 4.00
3859 5218 1.987306 TCCATCAGGCACGCTGGTA 60.987 57.895 0.00 0.00 33.74 3.25
3860 5219 1.815421 CCATCAGGCACGCTGGTAC 60.815 63.158 0.00 0.00 0.00 3.34
3861 5220 1.815421 CATCAGGCACGCTGGTACC 60.815 63.158 4.43 4.43 0.00 3.34
3862 5221 1.990060 ATCAGGCACGCTGGTACCT 60.990 57.895 14.36 0.00 40.76 3.08
3864 5223 3.706373 AGGCACGCTGGTACCTGG 61.706 66.667 19.31 12.05 38.55 4.45
3865 5224 4.016706 GGCACGCTGGTACCTGGT 62.017 66.667 19.31 4.05 0.00 4.00
3914 5273 0.869454 CGCCTCTCTTCATCAGTCGC 60.869 60.000 0.00 0.00 0.00 5.19
3916 5275 1.134848 GCCTCTCTTCATCAGTCGCTT 60.135 52.381 0.00 0.00 0.00 4.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.031120 AGTAGATCTCACTCCAGCTGC 58.969 52.381 8.66 0.00 0.00 5.25
2 3 3.286353 TGAGTAGATCTCACTCCAGCTG 58.714 50.000 20.37 6.78 46.77 4.24
12 13 5.335897 GGCTGATGAGTGATGAGTAGATCTC 60.336 48.000 0.00 0.00 43.03 2.75
13 14 4.523943 GGCTGATGAGTGATGAGTAGATCT 59.476 45.833 0.00 0.00 0.00 2.75
14 15 4.280425 TGGCTGATGAGTGATGAGTAGATC 59.720 45.833 0.00 0.00 0.00 2.75
15 16 4.221530 TGGCTGATGAGTGATGAGTAGAT 58.778 43.478 0.00 0.00 0.00 1.98
16 17 3.635591 TGGCTGATGAGTGATGAGTAGA 58.364 45.455 0.00 0.00 0.00 2.59
17 18 4.038883 TGATGGCTGATGAGTGATGAGTAG 59.961 45.833 0.00 0.00 0.00 2.57
18 19 3.962718 TGATGGCTGATGAGTGATGAGTA 59.037 43.478 0.00 0.00 0.00 2.59
19 20 2.770232 TGATGGCTGATGAGTGATGAGT 59.230 45.455 0.00 0.00 0.00 3.41
20 21 3.132160 GTGATGGCTGATGAGTGATGAG 58.868 50.000 0.00 0.00 0.00 2.90
21 22 2.770232 AGTGATGGCTGATGAGTGATGA 59.230 45.455 0.00 0.00 0.00 2.92
22 23 3.195471 AGTGATGGCTGATGAGTGATG 57.805 47.619 0.00 0.00 0.00 3.07
23 24 5.129980 TCTTTAGTGATGGCTGATGAGTGAT 59.870 40.000 0.00 0.00 0.00 3.06
63 64 5.463724 GGACAAGGATTAGATAAAGCGTGAG 59.536 44.000 0.00 0.00 0.00 3.51
64 65 5.357257 GGACAAGGATTAGATAAAGCGTGA 58.643 41.667 0.00 0.00 0.00 4.35
67 68 3.184581 GCGGACAAGGATTAGATAAAGCG 59.815 47.826 0.00 0.00 0.00 4.68
132 133 7.360607 GGTGTGTGCGTAATAATTTGTTACTCT 60.361 37.037 12.40 0.00 31.47 3.24
170 171 9.423061 GGCTGCATTTTCTTTCTTCTAAATTAA 57.577 29.630 0.50 0.00 0.00 1.40
171 172 8.034804 GGGCTGCATTTTCTTTCTTCTAAATTA 58.965 33.333 0.50 0.00 0.00 1.40
172 173 6.875726 GGGCTGCATTTTCTTTCTTCTAAATT 59.124 34.615 0.50 0.00 0.00 1.82
173 174 6.401394 GGGCTGCATTTTCTTTCTTCTAAAT 58.599 36.000 0.50 0.00 0.00 1.40
174 175 5.279456 GGGGCTGCATTTTCTTTCTTCTAAA 60.279 40.000 0.50 0.00 0.00 1.85
175 176 4.220602 GGGGCTGCATTTTCTTTCTTCTAA 59.779 41.667 0.50 0.00 0.00 2.10
176 177 3.763897 GGGGCTGCATTTTCTTTCTTCTA 59.236 43.478 0.50 0.00 0.00 2.10
177 178 2.564504 GGGGCTGCATTTTCTTTCTTCT 59.435 45.455 0.50 0.00 0.00 2.85
178 179 2.299867 TGGGGCTGCATTTTCTTTCTTC 59.700 45.455 0.50 0.00 0.00 2.87
179 180 2.328319 TGGGGCTGCATTTTCTTTCTT 58.672 42.857 0.50 0.00 0.00 2.52
180 181 2.014010 TGGGGCTGCATTTTCTTTCT 57.986 45.000 0.50 0.00 0.00 2.52
181 182 2.224257 TGTTGGGGCTGCATTTTCTTTC 60.224 45.455 0.50 0.00 0.00 2.62
182 183 1.767681 TGTTGGGGCTGCATTTTCTTT 59.232 42.857 0.50 0.00 0.00 2.52
183 184 1.422531 TGTTGGGGCTGCATTTTCTT 58.577 45.000 0.50 0.00 0.00 2.52
184 185 1.276989 CATGTTGGGGCTGCATTTTCT 59.723 47.619 0.50 0.00 0.00 2.52
185 186 1.002315 ACATGTTGGGGCTGCATTTTC 59.998 47.619 0.50 0.00 0.00 2.29
186 187 1.058284 ACATGTTGGGGCTGCATTTT 58.942 45.000 0.50 0.00 0.00 1.82
187 188 0.322322 CACATGTTGGGGCTGCATTT 59.678 50.000 0.50 0.00 0.00 2.32
188 189 0.832983 ACACATGTTGGGGCTGCATT 60.833 50.000 0.50 0.00 0.00 3.56
189 190 0.039472 TACACATGTTGGGGCTGCAT 59.961 50.000 0.50 0.00 0.00 3.96
190 191 0.178978 TTACACATGTTGGGGCTGCA 60.179 50.000 0.50 0.00 0.00 4.41
191 192 1.185315 ATTACACATGTTGGGGCTGC 58.815 50.000 0.00 0.00 0.00 5.25
192 193 3.620488 ACTATTACACATGTTGGGGCTG 58.380 45.455 0.00 0.00 0.00 4.85
193 194 3.681594 CGACTATTACACATGTTGGGGCT 60.682 47.826 0.00 0.00 0.00 5.19
194 195 2.612212 CGACTATTACACATGTTGGGGC 59.388 50.000 0.00 0.00 0.00 5.80
195 196 3.869065 ACGACTATTACACATGTTGGGG 58.131 45.455 0.00 0.00 0.00 4.96
196 197 5.175859 AGAACGACTATTACACATGTTGGG 58.824 41.667 0.00 0.00 0.00 4.12
197 198 6.721571 AAGAACGACTATTACACATGTTGG 57.278 37.500 0.00 0.00 0.00 3.77
198 199 8.922676 ACTTAAGAACGACTATTACACATGTTG 58.077 33.333 10.09 0.00 0.00 3.33
199 200 9.485206 AACTTAAGAACGACTATTACACATGTT 57.515 29.630 10.09 0.00 0.00 2.71
200 201 8.922676 CAACTTAAGAACGACTATTACACATGT 58.077 33.333 10.09 0.00 0.00 3.21
201 202 8.922676 ACAACTTAAGAACGACTATTACACATG 58.077 33.333 10.09 0.00 0.00 3.21
202 203 9.485206 AACAACTTAAGAACGACTATTACACAT 57.515 29.630 10.09 0.00 0.00 3.21
203 204 8.876275 AACAACTTAAGAACGACTATTACACA 57.124 30.769 10.09 0.00 0.00 3.72
204 205 9.577003 CAAACAACTTAAGAACGACTATTACAC 57.423 33.333 10.09 0.00 0.00 2.90
205 206 9.316730 ACAAACAACTTAAGAACGACTATTACA 57.683 29.630 10.09 0.00 0.00 2.41
209 210 9.754382 TCTTACAAACAACTTAAGAACGACTAT 57.246 29.630 10.09 0.00 30.57 2.12
210 211 9.241317 CTCTTACAAACAACTTAAGAACGACTA 57.759 33.333 10.09 0.00 32.71 2.59
211 212 7.977853 TCTCTTACAAACAACTTAAGAACGACT 59.022 33.333 10.09 0.00 32.71 4.18
212 213 8.123445 TCTCTTACAAACAACTTAAGAACGAC 57.877 34.615 10.09 0.00 32.71 4.34
213 214 8.761497 CATCTCTTACAAACAACTTAAGAACGA 58.239 33.333 10.09 0.00 32.71 3.85
214 215 8.548721 ACATCTCTTACAAACAACTTAAGAACG 58.451 33.333 10.09 0.00 32.71 3.95
215 216 9.865484 GACATCTCTTACAAACAACTTAAGAAC 57.135 33.333 10.09 0.00 32.71 3.01
216 217 8.761497 CGACATCTCTTACAAACAACTTAAGAA 58.239 33.333 10.09 0.00 32.71 2.52
217 218 7.095774 GCGACATCTCTTACAAACAACTTAAGA 60.096 37.037 10.09 0.00 32.26 2.10
218 219 7.010023 GCGACATCTCTTACAAACAACTTAAG 58.990 38.462 0.00 0.00 0.00 1.85
219 220 6.480651 TGCGACATCTCTTACAAACAACTTAA 59.519 34.615 0.00 0.00 0.00 1.85
220 221 5.986741 TGCGACATCTCTTACAAACAACTTA 59.013 36.000 0.00 0.00 0.00 2.24
221 222 4.814234 TGCGACATCTCTTACAAACAACTT 59.186 37.500 0.00 0.00 0.00 2.66
222 223 4.377021 TGCGACATCTCTTACAAACAACT 58.623 39.130 0.00 0.00 0.00 3.16
223 224 4.725556 TGCGACATCTCTTACAAACAAC 57.274 40.909 0.00 0.00 0.00 3.32
224 225 6.871492 TCTTATGCGACATCTCTTACAAACAA 59.129 34.615 0.00 0.00 0.00 2.83
225 226 6.394809 TCTTATGCGACATCTCTTACAAACA 58.605 36.000 0.00 0.00 0.00 2.83
226 227 6.887376 TCTTATGCGACATCTCTTACAAAC 57.113 37.500 0.00 0.00 0.00 2.93
227 228 8.492673 AATTCTTATGCGACATCTCTTACAAA 57.507 30.769 0.00 0.00 0.00 2.83
228 229 8.492673 AAATTCTTATGCGACATCTCTTACAA 57.507 30.769 0.00 0.00 0.00 2.41
229 230 8.492673 AAAATTCTTATGCGACATCTCTTACA 57.507 30.769 0.00 0.00 0.00 2.41
231 232 9.817809 ACTAAAATTCTTATGCGACATCTCTTA 57.182 29.630 0.00 0.00 0.00 2.10
232 233 8.607459 CACTAAAATTCTTATGCGACATCTCTT 58.393 33.333 0.00 0.00 0.00 2.85
233 234 7.981789 TCACTAAAATTCTTATGCGACATCTCT 59.018 33.333 0.00 0.00 0.00 3.10
234 235 8.131455 TCACTAAAATTCTTATGCGACATCTC 57.869 34.615 0.00 0.00 0.00 2.75
235 236 8.668510 ATCACTAAAATTCTTATGCGACATCT 57.331 30.769 0.00 0.00 0.00 2.90
236 237 9.798885 GTATCACTAAAATTCTTATGCGACATC 57.201 33.333 0.00 0.00 0.00 3.06
237 238 8.487970 CGTATCACTAAAATTCTTATGCGACAT 58.512 33.333 0.00 0.00 0.00 3.06
238 239 7.703197 TCGTATCACTAAAATTCTTATGCGACA 59.297 33.333 0.00 0.00 0.00 4.35
239 240 8.057812 TCGTATCACTAAAATTCTTATGCGAC 57.942 34.615 0.00 0.00 0.00 5.19
240 241 8.637281 TTCGTATCACTAAAATTCTTATGCGA 57.363 30.769 0.00 0.00 0.00 5.10
241 242 8.004344 CCTTCGTATCACTAAAATTCTTATGCG 58.996 37.037 0.00 0.00 0.00 4.73
242 243 9.042008 TCCTTCGTATCACTAAAATTCTTATGC 57.958 33.333 0.00 0.00 0.00 3.14
253 254 5.168569 CACTGCTTTCCTTCGTATCACTAA 58.831 41.667 0.00 0.00 0.00 2.24
264 265 1.302832 CTCCGCCACTGCTTTCCTT 60.303 57.895 0.00 0.00 34.43 3.36
299 300 2.194271 CTTCCTAAACTCCGTCGCATC 58.806 52.381 0.00 0.00 0.00 3.91
307 312 3.055021 CAGTTCCCTCCTTCCTAAACTCC 60.055 52.174 0.00 0.00 0.00 3.85
324 329 7.439157 TTGTATGATGGCATATAAGCAGTTC 57.561 36.000 0.00 0.00 39.09 3.01
341 346 5.659079 AGGGTTTTTGTGAACCTTTGTATGA 59.341 36.000 6.73 0.00 46.63 2.15
345 350 6.361768 TTTAGGGTTTTTGTGAACCTTTGT 57.638 33.333 6.73 0.00 46.63 2.83
361 366 4.919774 TGTGGTGACATGTATTTAGGGT 57.080 40.909 0.00 0.00 46.14 4.34
369 374 5.066634 ACGAAATTTGTTGTGGTGACATGTA 59.933 36.000 0.00 0.00 46.14 2.29
373 378 4.416620 GAACGAAATTTGTTGTGGTGACA 58.583 39.130 2.91 0.00 38.70 3.58
374 379 3.794564 GGAACGAAATTTGTTGTGGTGAC 59.205 43.478 2.91 0.00 0.00 3.67
379 385 6.401955 ACTTTTGGAACGAAATTTGTTGTG 57.598 33.333 2.91 0.00 0.00 3.33
407 413 9.807921 AGGAAATAATTTAGAAGTGAACTTGGA 57.192 29.630 0.00 0.00 36.11 3.53
410 416 9.244292 GGGAGGAAATAATTTAGAAGTGAACTT 57.756 33.333 0.00 0.00 39.23 2.66
411 417 7.834681 GGGGAGGAAATAATTTAGAAGTGAACT 59.165 37.037 0.00 0.00 0.00 3.01
412 418 7.834681 AGGGGAGGAAATAATTTAGAAGTGAAC 59.165 37.037 0.00 0.00 0.00 3.18
413 419 7.939781 AGGGGAGGAAATAATTTAGAAGTGAA 58.060 34.615 0.00 0.00 0.00 3.18
414 420 7.525158 AGGGGAGGAAATAATTTAGAAGTGA 57.475 36.000 0.00 0.00 0.00 3.41
415 421 8.055790 AGAAGGGGAGGAAATAATTTAGAAGTG 58.944 37.037 0.00 0.00 0.00 3.16
416 422 8.176216 AGAAGGGGAGGAAATAATTTAGAAGT 57.824 34.615 0.00 0.00 0.00 3.01
417 423 9.126151 GAAGAAGGGGAGGAAATAATTTAGAAG 57.874 37.037 0.00 0.00 0.00 2.85
431 437 2.269241 GTGCCGAAGAAGGGGAGG 59.731 66.667 0.00 0.00 0.00 4.30
512 518 1.895131 GTTGGTTCAAGGTGCATCCAT 59.105 47.619 0.00 0.00 39.02 3.41
546 552 2.693069 ACAGTCATCGAGAGGCAAAAG 58.307 47.619 0.00 0.00 0.00 2.27
582 588 6.521162 TGCAAGGGGAAAAAGAGTTTTATTC 58.479 36.000 0.00 0.00 37.07 1.75
593 599 8.049721 TCTATTTTTCTTTTGCAAGGGGAAAAA 58.950 29.630 28.99 28.99 42.61 1.94
602 608 5.911752 TGCCTGTCTATTTTTCTTTTGCAA 58.088 33.333 0.00 0.00 0.00 4.08
603 609 5.068987 ACTGCCTGTCTATTTTTCTTTTGCA 59.931 36.000 0.00 0.00 0.00 4.08
691 697 4.657814 AAAGCTGTCTCTCCCCATTAAA 57.342 40.909 0.00 0.00 0.00 1.52
742 753 3.301706 TGGCTAATTTTGCGACGAAAAC 58.698 40.909 0.00 0.00 0.00 2.43
748 759 3.920412 CCTTTTCTGGCTAATTTTGCGAC 59.080 43.478 0.00 0.00 0.00 5.19
959 1293 0.103390 TGTCTTCGTCTGCGGTTTGA 59.897 50.000 0.00 0.00 38.89 2.69
1157 1528 4.242586 TCGTCCTCCCCACCACCA 62.243 66.667 0.00 0.00 0.00 4.17
1466 1851 1.681264 CAGAGAACAAAACCCACACCC 59.319 52.381 0.00 0.00 0.00 4.61
1474 1859 6.088085 CACACTGAAACAACAGAGAACAAAAC 59.912 38.462 0.00 0.00 40.63 2.43
1493 1878 0.529833 ATCAGAGAGTCCGCACACTG 59.470 55.000 0.00 0.00 0.00 3.66
1541 1926 6.670695 AACCAAGCAAATCCAGTAATCTTT 57.329 33.333 0.00 0.00 0.00 2.52
1542 1927 7.775053 TTAACCAAGCAAATCCAGTAATCTT 57.225 32.000 0.00 0.00 0.00 2.40
1549 1934 5.870978 CCTCAATTTAACCAAGCAAATCCAG 59.129 40.000 0.00 0.00 0.00 3.86
1581 1966 6.745116 TCAGAATACATGTTACGGTATCAGG 58.255 40.000 2.30 8.79 30.23 3.86
1619 2008 6.149474 GTCTGGTACAAAGTATTGAAGCATGT 59.851 38.462 0.00 0.00 38.70 3.21
1681 2071 8.453238 TTTCAACTGTTGCTTAATACTGGTTA 57.547 30.769 15.52 0.00 0.00 2.85
1697 2087 9.778741 TCTAAGTCAGACATTAATTTCAACTGT 57.221 29.630 2.66 0.00 0.00 3.55
1745 2136 3.815401 ACTGTTGTTAATGAGCGAGCTTT 59.185 39.130 0.00 0.00 0.00 3.51
1746 2137 3.403038 ACTGTTGTTAATGAGCGAGCTT 58.597 40.909 0.00 0.00 0.00 3.74
1747 2138 3.045601 ACTGTTGTTAATGAGCGAGCT 57.954 42.857 0.00 0.00 0.00 4.09
1748 2139 3.058914 ACAACTGTTGTTAATGAGCGAGC 60.059 43.478 19.85 0.00 42.22 5.03
1751 2142 5.591643 AGTACAACTGTTGTTAATGAGCG 57.408 39.130 28.83 0.00 42.22 5.03
1783 2174 6.170675 AGAATGTCGCAACTTTATGAGTTC 57.829 37.500 0.00 0.00 45.40 3.01
1846 2240 1.145803 GTACACCAACTCGGCAACTC 58.854 55.000 0.00 0.00 39.03 3.01
1847 2241 0.466543 TGTACACCAACTCGGCAACT 59.533 50.000 0.00 0.00 39.03 3.16
1848 2242 1.301423 TTGTACACCAACTCGGCAAC 58.699 50.000 0.00 0.00 39.03 4.17
1849 2243 2.039818 TTTGTACACCAACTCGGCAA 57.960 45.000 0.00 0.00 39.03 4.52
1850 2244 2.264005 ATTTGTACACCAACTCGGCA 57.736 45.000 0.00 0.00 39.03 5.69
1851 2245 3.003897 TCAAATTTGTACACCAACTCGGC 59.996 43.478 17.47 0.00 39.03 5.54
1852 2246 4.320202 CCTCAAATTTGTACACCAACTCGG 60.320 45.833 17.47 0.00 42.50 4.63
1853 2247 4.783242 CCTCAAATTTGTACACCAACTCG 58.217 43.478 17.47 0.00 31.20 4.18
1924 2333 0.981183 TGGTGAGGGCAATCGTAAGT 59.019 50.000 0.00 0.00 39.48 2.24
1925 2334 1.737793 GTTGGTGAGGGCAATCGTAAG 59.262 52.381 0.00 0.00 0.00 2.34
1926 2335 1.349688 AGTTGGTGAGGGCAATCGTAA 59.650 47.619 0.00 0.00 0.00 3.18
1927 2336 0.981183 AGTTGGTGAGGGCAATCGTA 59.019 50.000 0.00 0.00 0.00 3.43
1928 2337 0.321653 GAGTTGGTGAGGGCAATCGT 60.322 55.000 0.00 0.00 0.00 3.73
1930 2339 1.815003 CAAGAGTTGGTGAGGGCAATC 59.185 52.381 0.00 0.00 0.00 2.67
1931 2340 1.548582 CCAAGAGTTGGTGAGGGCAAT 60.549 52.381 0.00 0.00 45.93 3.56
1990 2399 0.895100 GCACCATCAAGACAAGGGCA 60.895 55.000 0.00 0.00 0.00 5.36
2137 2790 9.703892 TCAAATTTAGATGTAACCAAAACCATG 57.296 29.630 0.00 0.00 0.00 3.66
2184 3031 7.220030 TCTCCATTCTATGCTCAACCTATTTC 58.780 38.462 0.00 0.00 0.00 2.17
2191 3043 4.637534 TGCTTTCTCCATTCTATGCTCAAC 59.362 41.667 0.00 0.00 0.00 3.18
2246 3098 7.224557 CCGTTGGAAAGTTCAATCAATCTTTTT 59.775 33.333 0.00 0.00 31.56 1.94
2248 3100 6.040391 TCCGTTGGAAAGTTCAATCAATCTTT 59.960 34.615 0.00 0.00 33.64 2.52
2249 3101 5.534654 TCCGTTGGAAAGTTCAATCAATCTT 59.465 36.000 0.00 0.00 0.00 2.40
2252 3104 4.827284 AGTCCGTTGGAAAGTTCAATCAAT 59.173 37.500 0.00 0.00 31.38 2.57
2253 3105 4.204012 AGTCCGTTGGAAAGTTCAATCAA 58.796 39.130 0.00 0.00 31.38 2.57
2254 3106 3.813166 GAGTCCGTTGGAAAGTTCAATCA 59.187 43.478 0.00 0.00 31.38 2.57
2256 3108 3.815809 TGAGTCCGTTGGAAAGTTCAAT 58.184 40.909 0.00 0.00 31.38 2.57
2257 3109 3.269538 TGAGTCCGTTGGAAAGTTCAA 57.730 42.857 0.00 0.00 31.38 2.69
2258 3110 2.992124 TGAGTCCGTTGGAAAGTTCA 57.008 45.000 0.00 0.00 31.38 3.18
2261 3113 2.779506 GGAATGAGTCCGTTGGAAAGT 58.220 47.619 0.00 0.00 36.40 2.66
2278 3130 5.356751 CCCATTCAATCGTTTACTCATGGAA 59.643 40.000 0.00 0.00 33.08 3.53
2279 3131 4.881273 CCCATTCAATCGTTTACTCATGGA 59.119 41.667 0.00 0.00 33.08 3.41
2280 3132 4.881273 TCCCATTCAATCGTTTACTCATGG 59.119 41.667 0.00 0.00 0.00 3.66
2282 3134 6.017934 CGAATCCCATTCAATCGTTTACTCAT 60.018 38.462 0.00 0.00 39.22 2.90
2283 3135 5.293324 CGAATCCCATTCAATCGTTTACTCA 59.707 40.000 0.00 0.00 39.22 3.41
2286 3138 4.035208 AGCGAATCCCATTCAATCGTTTAC 59.965 41.667 0.00 0.00 39.22 2.01
2288 3140 3.016736 AGCGAATCCCATTCAATCGTTT 58.983 40.909 0.00 0.00 39.22 3.60
2289 3141 2.643551 AGCGAATCCCATTCAATCGTT 58.356 42.857 0.00 0.00 39.22 3.85
2290 3142 2.332063 AGCGAATCCCATTCAATCGT 57.668 45.000 0.00 0.00 39.22 3.73
2291 3143 2.287188 CCAAGCGAATCCCATTCAATCG 60.287 50.000 0.00 0.00 39.22 3.34
2293 3145 2.034124 CCCAAGCGAATCCCATTCAAT 58.966 47.619 0.00 0.00 39.22 2.57
2294 3146 1.473258 CCCAAGCGAATCCCATTCAA 58.527 50.000 0.00 0.00 39.22 2.69
2295 3147 1.037030 GCCCAAGCGAATCCCATTCA 61.037 55.000 0.00 0.00 39.22 2.57
2296 3148 1.037030 TGCCCAAGCGAATCCCATTC 61.037 55.000 0.00 0.00 44.31 2.67
2297 3149 0.614415 TTGCCCAAGCGAATCCCATT 60.614 50.000 0.00 0.00 44.31 3.16
2298 3150 1.000233 TTGCCCAAGCGAATCCCAT 60.000 52.632 0.00 0.00 44.31 4.00
2299 3151 1.976474 GTTGCCCAAGCGAATCCCA 60.976 57.895 0.00 0.00 44.31 4.37
2301 3153 1.582610 TTCGTTGCCCAAGCGAATCC 61.583 55.000 11.50 0.00 44.31 3.01
2303 3155 2.566824 ATTCGTTGCCCAAGCGAAT 58.433 47.368 17.29 17.29 46.07 3.34
2304 3156 0.239879 GAATTCGTTGCCCAAGCGAA 59.760 50.000 15.29 15.29 46.33 4.70
2305 3157 0.886938 TGAATTCGTTGCCCAAGCGA 60.887 50.000 0.04 0.00 44.31 4.93
2306 3158 0.039617 TTGAATTCGTTGCCCAAGCG 60.040 50.000 0.04 0.00 44.31 4.68
2307 3159 1.000274 ACTTGAATTCGTTGCCCAAGC 60.000 47.619 0.04 0.00 38.13 4.01
2308 3160 2.351738 GGACTTGAATTCGTTGCCCAAG 60.352 50.000 0.04 0.00 39.84 3.61
2309 3161 1.611491 GGACTTGAATTCGTTGCCCAA 59.389 47.619 0.04 0.00 0.00 4.12
2310 3162 1.202879 AGGACTTGAATTCGTTGCCCA 60.203 47.619 0.04 0.00 0.00 5.36
2312 3164 1.200020 CCAGGACTTGAATTCGTTGCC 59.800 52.381 0.04 0.29 0.00 4.52
2313 3165 1.880027 ACCAGGACTTGAATTCGTTGC 59.120 47.619 0.04 0.00 0.00 4.17
2315 3167 2.552373 GGGACCAGGACTTGAATTCGTT 60.552 50.000 0.04 0.00 0.00 3.85
2332 3184 7.946381 AATTCAATAAGAGAGAAAAGGGGAC 57.054 36.000 0.00 0.00 0.00 4.46
2334 3186 9.467796 AGTTAATTCAATAAGAGAGAAAAGGGG 57.532 33.333 0.00 0.00 0.00 4.79
2458 3340 9.778741 GTAGGATTGGTTCTCATAATTATCACA 57.221 33.333 0.00 0.00 0.00 3.58
2459 3341 9.778741 TGTAGGATTGGTTCTCATAATTATCAC 57.221 33.333 0.00 0.00 0.00 3.06
2463 3345 9.832445 GAACTGTAGGATTGGTTCTCATAATTA 57.168 33.333 0.00 0.00 36.24 1.40
2464 3346 8.552296 AGAACTGTAGGATTGGTTCTCATAATT 58.448 33.333 0.00 0.00 42.92 1.40
2465 3347 8.095452 AGAACTGTAGGATTGGTTCTCATAAT 57.905 34.615 0.00 0.00 42.92 1.28
2466 3348 7.496346 AGAACTGTAGGATTGGTTCTCATAA 57.504 36.000 0.00 0.00 42.92 1.90
2467 3349 8.783660 ATAGAACTGTAGGATTGGTTCTCATA 57.216 34.615 9.90 0.00 44.54 2.15
2468 3350 7.682787 ATAGAACTGTAGGATTGGTTCTCAT 57.317 36.000 9.90 2.31 44.54 2.90
2469 3351 7.496346 AATAGAACTGTAGGATTGGTTCTCA 57.504 36.000 9.90 0.42 44.54 3.27
2473 3355 9.408648 CCAAATAATAGAACTGTAGGATTGGTT 57.591 33.333 0.00 0.00 0.00 3.67
2474 3356 7.998964 CCCAAATAATAGAACTGTAGGATTGGT 59.001 37.037 0.00 0.00 32.53 3.67
2475 3357 8.217799 TCCCAAATAATAGAACTGTAGGATTGG 58.782 37.037 0.00 0.00 33.84 3.16
2476 3358 9.627123 TTCCCAAATAATAGAACTGTAGGATTG 57.373 33.333 0.00 0.00 0.00 2.67
2479 3361 9.847224 GATTTCCCAAATAATAGAACTGTAGGA 57.153 33.333 0.00 0.00 0.00 2.94
2480 3362 9.627123 TGATTTCCCAAATAATAGAACTGTAGG 57.373 33.333 0.00 0.00 0.00 3.18
2483 3365 8.971073 CCTTGATTTCCCAAATAATAGAACTGT 58.029 33.333 0.00 0.00 0.00 3.55
2484 3366 8.971073 ACCTTGATTTCCCAAATAATAGAACTG 58.029 33.333 0.00 0.00 0.00 3.16
2494 3376 5.012893 GTCTCTCACCTTGATTTCCCAAAT 58.987 41.667 0.00 0.00 0.00 2.32
2509 3391 6.560253 TTCTTTTATTTGCCTGTCTCTCAC 57.440 37.500 0.00 0.00 0.00 3.51
2576 3898 4.156008 CCCCTTACCAAGAAAAGTGAATCG 59.844 45.833 0.00 0.00 0.00 3.34
2609 3932 2.682856 TGTTGTGAAGCTTGTCTTGGAC 59.317 45.455 2.10 0.00 34.56 4.02
2663 3986 1.194781 TGAGTTGGAGGGAGGAGCAC 61.195 60.000 0.00 0.00 0.00 4.40
2711 4034 1.988467 CACGATTAGCGCATCATCGAT 59.012 47.619 30.51 17.82 46.04 3.59
2716 4039 1.487482 GTAGCACGATTAGCGCATCA 58.513 50.000 11.47 0.00 46.04 3.07
2749 4072 4.951715 AGATATGGAGAACATGCTTTGCAA 59.048 37.500 0.00 0.00 43.62 4.08
2797 4120 5.545658 TTCGCAAGGAAATACAATCTCAC 57.454 39.130 0.00 0.00 38.47 3.51
2817 4143 1.594862 GCCGTGAGCAGTACATCATTC 59.405 52.381 0.00 0.00 42.97 2.67
2870 4199 2.849294 AGCTTTCACTTCCTCTGGAC 57.151 50.000 0.00 0.00 0.00 4.02
2907 4236 1.583495 CTGTGCATGCCACTGTCTGG 61.583 60.000 16.68 0.00 44.92 3.86
2949 4278 2.639839 AGAGAACCAGCACACTACCAAT 59.360 45.455 0.00 0.00 0.00 3.16
3222 4560 4.489810 CATGTAGAGACAAGTCACCTCAC 58.510 47.826 2.72 0.00 39.59 3.51
3224 4562 3.677424 GCCATGTAGAGACAAGTCACCTC 60.677 52.174 2.72 0.00 39.59 3.85
3253 4591 0.536006 AGGTCTCAGGCACTTGCAAC 60.536 55.000 3.15 0.00 44.36 4.17
3379 4717 6.883744 AGGTGAAAGGAGCAATAAAACAAAA 58.116 32.000 0.00 0.00 0.00 2.44
3450 4788 5.006165 GCAGTACAGCAGAATCAACAGATAC 59.994 44.000 5.23 0.00 0.00 2.24
3537 4875 3.387374 ACCATTCACAATTTCAACAGCCA 59.613 39.130 0.00 0.00 0.00 4.75
3543 4881 7.249858 CGATCATGTACCATTCACAATTTCAA 58.750 34.615 0.00 0.00 0.00 2.69
3558 4896 3.511699 TCAGTTCAGTGCGATCATGTAC 58.488 45.455 0.00 0.00 0.00 2.90
3561 4899 3.869832 AGATTCAGTTCAGTGCGATCATG 59.130 43.478 0.00 0.00 0.00 3.07
3642 4984 2.370445 CCCATGCCCTCTCGGTCTT 61.370 63.158 0.00 0.00 0.00 3.01
3663 5005 6.371825 GGACAGAGGTGGTATGTTTTAAAGAG 59.628 42.308 0.00 0.00 27.90 2.85
3674 5016 7.789831 TCTCATATTTTAGGACAGAGGTGGTAT 59.210 37.037 0.00 0.00 0.00 2.73
3795 5139 3.707102 AGTCTAGTTCCTGGCCTGAATAC 59.293 47.826 11.88 5.98 0.00 1.89
3916 5275 1.768888 GGCTAATCCTTCCCCGGGA 60.769 63.158 26.32 0.34 37.26 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.