Multiple sequence alignment - TraesCS3D01G389000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G389000 chr3D 100.000 8768 0 0 1 8768 504311081 504302314 0.000000e+00 16192
1 TraesCS3D01G389000 chr3D 75.800 500 71 18 6837 7320 504303727 504303262 3.210000e-49 207
2 TraesCS3D01G389000 chr3D 75.800 500 71 18 7355 7820 504304245 504303762 3.210000e-49 207
3 TraesCS3D01G389000 chr3D 92.248 129 9 1 13 140 504333086 504332958 1.940000e-41 182
4 TraesCS3D01G389000 chr3B 94.954 6342 209 36 1857 8149 666002369 665996090 0.000000e+00 9836
5 TraesCS3D01G389000 chr3B 94.114 1750 76 19 130 1861 666004152 666002412 0.000000e+00 2636
6 TraesCS3D01G389000 chr3B 85.362 649 26 27 8145 8768 665996032 665995428 7.530000e-170 608
7 TraesCS3D01G389000 chr3B 89.571 163 16 1 7172 7333 665996573 665996411 1.150000e-48 206
8 TraesCS3D01G389000 chr3B 90.667 150 13 1 7671 7820 665997069 665996921 1.930000e-46 198
9 TraesCS3D01G389000 chr3B 76.829 328 51 14 7350 7667 665997415 665997103 2.530000e-35 161
10 TraesCS3D01G389000 chr3A 93.622 3136 107 28 4685 7785 642713580 642710503 0.000000e+00 4597
11 TraesCS3D01G389000 chr3A 97.196 2247 54 8 2299 4542 642715817 642713577 0.000000e+00 3792
12 TraesCS3D01G389000 chr3A 92.016 1741 102 17 137 1861 642718144 642716425 0.000000e+00 2410
13 TraesCS3D01G389000 chr3A 96.847 444 12 1 1859 2302 642716380 642715939 0.000000e+00 741
14 TraesCS3D01G389000 chr3A 86.720 625 40 21 8148 8768 642710044 642709459 0.000000e+00 654
15 TraesCS3D01G389000 chr3A 94.022 368 21 1 7783 8149 642710472 642710105 2.770000e-154 556
16 TraesCS3D01G389000 chr3A 90.667 150 13 1 7671 7820 642711120 642710972 1.930000e-46 198
17 TraesCS3D01G389000 chr3A 81.172 239 30 8 6834 7061 642710940 642710706 2.520000e-40 178
18 TraesCS3D01G389000 chr3A 93.043 115 7 1 7172 7285 642710617 642710503 5.440000e-37 167
19 TraesCS3D01G389000 chr3A 75.625 320 55 12 7350 7664 642711457 642711156 4.270000e-28 137
20 TraesCS3D01G389000 chr4D 97.902 143 3 0 2187 2329 481068903 481068761 1.890000e-61 248


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G389000 chr3D 504302314 504311081 8767 True 16192 16192 100.000 1 8768 1 chr3D.!!$R1 8767
1 TraesCS3D01G389000 chr3D 504303262 504304245 983 True 207 207 75.800 6837 7820 2 chr3D.!!$R3 983
2 TraesCS3D01G389000 chr3B 665995428 666002369 6941 True 5222 9836 90.158 1857 8768 2 chr3B.!!$R2 6911
3 TraesCS3D01G389000 chr3B 666002412 666004152 1740 True 2636 2636 94.114 130 1861 1 chr3B.!!$R1 1731
4 TraesCS3D01G389000 chr3A 642709459 642718144 8685 True 1343 4597 90.093 137 8768 10 chr3A.!!$R1 8631

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
115 116 0.253327 ACCCTTAGCTAACAGCCTGC 59.747 55.000 0.86 0.00 43.77 4.85 F
549 563 0.526662 ACCACCTCGTTCTAGAAGCG 59.473 55.000 5.12 12.47 0.00 4.68 F
739 762 0.672401 AGTGCCATTTCGTACACGGG 60.672 55.000 1.39 0.00 40.29 5.28 F
1372 1397 1.451651 GCCGAAATCGTGCAAAAACAG 59.548 47.619 10.13 0.00 37.74 3.16 F
1818 1848 1.067565 CAGTAGACACACACATCCGCT 60.068 52.381 0.00 0.00 0.00 5.52 F
2042 2121 2.576191 TGGATAGTTTGCCTACTGCCTT 59.424 45.455 0.00 0.00 40.16 4.35 F
3217 3423 0.770499 TGCATCCTTCACTTGGTCCA 59.230 50.000 0.00 0.00 0.00 4.02 F
3659 3866 3.815856 TTGCTCTGGATCTGAAGCTAG 57.184 47.619 12.64 0.00 0.00 3.42 F
4388 4602 0.178995 TGTGGCCAGTGCTTCATCAA 60.179 50.000 5.11 0.00 37.74 2.57 F
5089 5304 0.451383 ATGCACACACACACACACAC 59.549 50.000 0.00 0.00 0.00 3.82 F
6657 6925 0.102481 GCTCCGGATCACACGTGTAT 59.898 55.000 22.90 14.84 0.00 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1563 1593 0.027979 CATATTGTCGGCCTGTTGCG 59.972 55.000 0.00 0.00 42.61 4.85 R
1804 1834 0.320421 GGTGTAGCGGATGTGTGTGT 60.320 55.000 0.00 0.00 0.00 3.72 R
1807 1837 0.321210 TTGGGTGTAGCGGATGTGTG 60.321 55.000 0.00 0.00 0.00 3.82 R
2796 3000 0.036010 CAGTACACTCCTGGCAAGGG 60.036 60.000 7.48 0.11 44.62 3.95 R
2987 3191 3.399330 AGTATCAGGAAACCACAACGTG 58.601 45.455 0.00 0.00 0.00 4.49 R
3663 3870 3.765381 TGATGCAAATGACTGAAGGGAA 58.235 40.909 0.00 0.00 0.00 3.97 R
4050 4261 0.380378 GCCTCACGTTTTGTCTGCAA 59.620 50.000 0.00 0.00 0.00 4.08 R
5331 5546 0.103937 GCAGCTACAGCACCTCCTAG 59.896 60.000 3.70 0.00 45.16 3.02 R
5626 5894 0.596577 CTGTTGTGCAGCTGCTCATT 59.403 50.000 35.98 0.00 42.97 2.57 R
6832 7100 0.609131 CAAGGAACATGCGAGGGGTT 60.609 55.000 0.00 0.00 0.00 4.11 R
8382 8763 0.036875 CCTGGTCCAAAGGTCACCTC 59.963 60.000 0.00 0.00 30.89 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.505301 CGCATCCGTGTTATATAGCATG 57.495 45.455 10.89 10.89 0.00 4.06
26 27 4.173256 CGCATCCGTGTTATATAGCATGA 58.827 43.478 17.61 10.93 0.00 3.07
27 28 4.625311 CGCATCCGTGTTATATAGCATGAA 59.375 41.667 17.61 0.52 0.00 2.57
28 29 5.120053 CGCATCCGTGTTATATAGCATGAAA 59.880 40.000 17.61 7.92 0.00 2.69
29 30 6.347321 CGCATCCGTGTTATATAGCATGAAAA 60.347 38.462 17.61 5.90 0.00 2.29
30 31 7.530010 GCATCCGTGTTATATAGCATGAAAAT 58.470 34.615 17.61 7.55 0.00 1.82
31 32 7.482743 GCATCCGTGTTATATAGCATGAAAATG 59.517 37.037 17.61 16.62 0.00 2.32
32 33 8.720562 CATCCGTGTTATATAGCATGAAAATGA 58.279 33.333 17.61 8.23 0.00 2.57
33 34 8.846943 TCCGTGTTATATAGCATGAAAATGAT 57.153 30.769 17.61 0.00 0.00 2.45
34 35 9.283768 TCCGTGTTATATAGCATGAAAATGATT 57.716 29.630 17.61 0.00 0.00 2.57
43 44 6.913873 AGCATGAAAATGATTACAATTGGC 57.086 33.333 10.83 0.00 0.00 4.52
44 45 5.521010 AGCATGAAAATGATTACAATTGGCG 59.479 36.000 10.83 0.00 0.00 5.69
45 46 5.730269 CATGAAAATGATTACAATTGGCGC 58.270 37.500 10.83 0.00 0.00 6.53
46 47 4.814147 TGAAAATGATTACAATTGGCGCA 58.186 34.783 10.83 2.87 0.00 6.09
47 48 4.863689 TGAAAATGATTACAATTGGCGCAG 59.136 37.500 10.83 0.00 0.00 5.18
48 49 3.441496 AATGATTACAATTGGCGCAGG 57.559 42.857 10.83 0.00 0.00 4.85
49 50 1.832883 TGATTACAATTGGCGCAGGT 58.167 45.000 10.83 1.48 0.00 4.00
50 51 2.166829 TGATTACAATTGGCGCAGGTT 58.833 42.857 10.83 0.00 0.00 3.50
51 52 2.094803 TGATTACAATTGGCGCAGGTTG 60.095 45.455 10.83 12.81 0.00 3.77
52 53 1.323412 TTACAATTGGCGCAGGTTGT 58.677 45.000 21.45 21.45 38.28 3.32
53 54 1.323412 TACAATTGGCGCAGGTTGTT 58.677 45.000 22.44 11.21 36.34 2.83
54 55 1.323412 ACAATTGGCGCAGGTTGTTA 58.677 45.000 10.83 0.00 31.20 2.41
55 56 1.000717 ACAATTGGCGCAGGTTGTTAC 60.001 47.619 10.83 0.00 31.20 2.50
56 57 1.269448 CAATTGGCGCAGGTTGTTACT 59.731 47.619 10.83 0.00 0.00 2.24
57 58 2.483014 ATTGGCGCAGGTTGTTACTA 57.517 45.000 10.83 0.00 0.00 1.82
58 59 1.803334 TTGGCGCAGGTTGTTACTAG 58.197 50.000 10.83 0.00 0.00 2.57
59 60 0.682852 TGGCGCAGGTTGTTACTAGT 59.317 50.000 10.83 0.00 0.00 2.57
60 61 1.337447 TGGCGCAGGTTGTTACTAGTC 60.337 52.381 10.83 0.00 0.00 2.59
61 62 1.067071 GGCGCAGGTTGTTACTAGTCT 60.067 52.381 10.83 0.00 0.00 3.24
62 63 2.612221 GGCGCAGGTTGTTACTAGTCTT 60.612 50.000 10.83 0.00 0.00 3.01
63 64 3.064931 GCGCAGGTTGTTACTAGTCTTT 58.935 45.455 0.30 0.00 0.00 2.52
64 65 3.120649 GCGCAGGTTGTTACTAGTCTTTG 60.121 47.826 0.30 0.00 0.00 2.77
65 66 3.120649 CGCAGGTTGTTACTAGTCTTTGC 60.121 47.826 0.00 0.78 0.00 3.68
66 67 4.065789 GCAGGTTGTTACTAGTCTTTGCT 58.934 43.478 0.00 0.00 0.00 3.91
67 68 4.152580 GCAGGTTGTTACTAGTCTTTGCTC 59.847 45.833 0.00 0.00 0.00 4.26
68 69 5.542779 CAGGTTGTTACTAGTCTTTGCTCT 58.457 41.667 0.00 0.00 0.00 4.09
69 70 6.688578 CAGGTTGTTACTAGTCTTTGCTCTA 58.311 40.000 0.00 0.00 0.00 2.43
70 71 6.586844 CAGGTTGTTACTAGTCTTTGCTCTAC 59.413 42.308 0.00 0.00 0.00 2.59
71 72 6.494146 AGGTTGTTACTAGTCTTTGCTCTACT 59.506 38.462 0.00 0.00 0.00 2.57
72 73 6.807720 GGTTGTTACTAGTCTTTGCTCTACTC 59.192 42.308 0.00 0.00 0.00 2.59
73 74 6.512342 TGTTACTAGTCTTTGCTCTACTCC 57.488 41.667 0.00 0.00 0.00 3.85
74 75 6.008331 TGTTACTAGTCTTTGCTCTACTCCA 58.992 40.000 0.00 0.00 0.00 3.86
75 76 6.492429 TGTTACTAGTCTTTGCTCTACTCCAA 59.508 38.462 0.00 0.00 0.00 3.53
76 77 5.652994 ACTAGTCTTTGCTCTACTCCAAG 57.347 43.478 0.00 0.00 0.00 3.61
77 78 3.326836 AGTCTTTGCTCTACTCCAAGC 57.673 47.619 0.00 0.00 39.02 4.01
78 79 2.903135 AGTCTTTGCTCTACTCCAAGCT 59.097 45.455 0.00 0.00 39.31 3.74
79 80 4.090090 AGTCTTTGCTCTACTCCAAGCTA 58.910 43.478 0.00 0.00 39.31 3.32
80 81 4.714308 AGTCTTTGCTCTACTCCAAGCTAT 59.286 41.667 0.00 0.00 39.31 2.97
81 82 5.894393 AGTCTTTGCTCTACTCCAAGCTATA 59.106 40.000 0.00 0.00 39.31 1.31
82 83 5.980715 GTCTTTGCTCTACTCCAAGCTATAC 59.019 44.000 0.00 0.00 39.31 1.47
83 84 5.656859 TCTTTGCTCTACTCCAAGCTATACA 59.343 40.000 0.00 0.00 39.31 2.29
84 85 6.325028 TCTTTGCTCTACTCCAAGCTATACAT 59.675 38.462 0.00 0.00 39.31 2.29
85 86 5.459536 TGCTCTACTCCAAGCTATACATG 57.540 43.478 0.00 0.00 39.31 3.21
86 87 5.140454 TGCTCTACTCCAAGCTATACATGA 58.860 41.667 0.00 0.00 39.31 3.07
87 88 5.598417 TGCTCTACTCCAAGCTATACATGAA 59.402 40.000 0.00 0.00 39.31 2.57
88 89 6.268617 TGCTCTACTCCAAGCTATACATGAAT 59.731 38.462 0.00 0.00 39.31 2.57
89 90 7.451566 TGCTCTACTCCAAGCTATACATGAATA 59.548 37.037 0.00 0.00 39.31 1.75
90 91 8.307483 GCTCTACTCCAAGCTATACATGAATAA 58.693 37.037 0.00 0.00 35.60 1.40
91 92 9.853555 CTCTACTCCAAGCTATACATGAATAAG 57.146 37.037 0.00 0.00 0.00 1.73
92 93 9.588096 TCTACTCCAAGCTATACATGAATAAGA 57.412 33.333 0.00 0.00 0.00 2.10
95 96 8.874156 ACTCCAAGCTATACATGAATAAGATCA 58.126 33.333 0.00 0.00 0.00 2.92
96 97 9.716531 CTCCAAGCTATACATGAATAAGATCAA 57.283 33.333 0.00 0.00 32.06 2.57
97 98 9.494271 TCCAAGCTATACATGAATAAGATCAAC 57.506 33.333 0.00 0.00 32.06 3.18
98 99 8.725148 CCAAGCTATACATGAATAAGATCAACC 58.275 37.037 0.00 0.00 32.06 3.77
99 100 8.725148 CAAGCTATACATGAATAAGATCAACCC 58.275 37.037 0.00 0.00 32.06 4.11
100 101 8.212259 AGCTATACATGAATAAGATCAACCCT 57.788 34.615 0.00 0.00 32.06 4.34
101 102 8.664079 AGCTATACATGAATAAGATCAACCCTT 58.336 33.333 0.00 0.00 32.06 3.95
102 103 9.944376 GCTATACATGAATAAGATCAACCCTTA 57.056 33.333 0.00 0.00 32.06 2.69
104 105 8.854614 ATACATGAATAAGATCAACCCTTAGC 57.145 34.615 0.00 0.00 32.06 3.09
105 106 6.904626 ACATGAATAAGATCAACCCTTAGCT 58.095 36.000 0.00 0.00 32.06 3.32
106 107 8.034313 ACATGAATAAGATCAACCCTTAGCTA 57.966 34.615 0.00 0.00 32.06 3.32
107 108 8.494433 ACATGAATAAGATCAACCCTTAGCTAA 58.506 33.333 5.94 5.94 32.06 3.09
108 109 8.778358 CATGAATAAGATCAACCCTTAGCTAAC 58.222 37.037 0.86 0.00 32.06 2.34
109 110 7.857456 TGAATAAGATCAACCCTTAGCTAACA 58.143 34.615 0.86 0.00 30.61 2.41
110 111 7.987458 TGAATAAGATCAACCCTTAGCTAACAG 59.013 37.037 0.86 0.00 30.61 3.16
111 112 4.143986 AGATCAACCCTTAGCTAACAGC 57.856 45.455 0.86 0.00 42.84 4.40
112 113 2.781681 TCAACCCTTAGCTAACAGCC 57.218 50.000 0.86 0.00 43.77 4.85
113 114 2.266279 TCAACCCTTAGCTAACAGCCT 58.734 47.619 0.86 0.00 43.77 4.58
114 115 2.027192 TCAACCCTTAGCTAACAGCCTG 60.027 50.000 0.86 0.00 43.77 4.85
115 116 0.253327 ACCCTTAGCTAACAGCCTGC 59.747 55.000 0.86 0.00 43.77 4.85
116 117 0.543749 CCCTTAGCTAACAGCCTGCT 59.456 55.000 0.86 0.00 43.77 4.24
117 118 1.762957 CCCTTAGCTAACAGCCTGCTA 59.237 52.381 0.86 0.00 43.77 3.49
118 119 2.483889 CCCTTAGCTAACAGCCTGCTAC 60.484 54.545 0.86 0.00 43.77 3.58
119 120 2.168521 CCTTAGCTAACAGCCTGCTACA 59.831 50.000 0.86 0.00 43.77 2.74
120 121 3.181461 CCTTAGCTAACAGCCTGCTACAT 60.181 47.826 0.86 0.00 43.77 2.29
121 122 4.039245 CCTTAGCTAACAGCCTGCTACATA 59.961 45.833 0.86 0.00 43.77 2.29
122 123 3.460857 AGCTAACAGCCTGCTACATAC 57.539 47.619 0.00 0.00 43.77 2.39
123 124 2.766263 AGCTAACAGCCTGCTACATACA 59.234 45.455 0.00 0.00 43.77 2.29
124 125 3.389329 AGCTAACAGCCTGCTACATACAT 59.611 43.478 0.00 0.00 43.77 2.29
125 126 4.588951 AGCTAACAGCCTGCTACATACATA 59.411 41.667 0.00 0.00 43.77 2.29
126 127 5.247110 AGCTAACAGCCTGCTACATACATAT 59.753 40.000 0.00 0.00 43.77 1.78
127 128 5.934625 GCTAACAGCCTGCTACATACATATT 59.065 40.000 0.00 0.00 34.48 1.28
128 129 7.039011 AGCTAACAGCCTGCTACATACATATTA 60.039 37.037 0.00 0.00 43.77 0.98
129 130 7.063544 GCTAACAGCCTGCTACATACATATTAC 59.936 40.741 0.00 0.00 34.48 1.89
130 131 6.419484 ACAGCCTGCTACATACATATTACA 57.581 37.500 0.00 0.00 0.00 2.41
131 132 6.223852 ACAGCCTGCTACATACATATTACAC 58.776 40.000 0.00 0.00 0.00 2.90
132 133 5.346011 CAGCCTGCTACATACATATTACACG 59.654 44.000 0.00 0.00 0.00 4.49
133 134 4.091509 GCCTGCTACATACATATTACACGC 59.908 45.833 0.00 0.00 0.00 5.34
134 135 5.227152 CCTGCTACATACATATTACACGCA 58.773 41.667 0.00 0.00 0.00 5.24
135 136 5.118664 CCTGCTACATACATATTACACGCAC 59.881 44.000 0.00 0.00 0.00 5.34
160 161 6.451393 GCACCAACCTATACAATTTCACAAA 58.549 36.000 0.00 0.00 0.00 2.83
257 258 4.267214 CACAAACGTGAACAATTGCAATCA 59.733 37.500 13.38 4.19 36.43 2.57
300 309 2.620627 GGGTTTTCCTCACCCGATCAAT 60.621 50.000 0.00 0.00 44.83 2.57
302 311 4.266714 GGTTTTCCTCACCCGATCAATAA 58.733 43.478 0.00 0.00 36.94 1.40
307 316 2.103094 CCTCACCCGATCAATAAGAGCA 59.897 50.000 0.00 0.00 31.47 4.26
315 324 4.285292 CGATCAATAAGAGCATTGTTGGC 58.715 43.478 10.00 0.00 37.23 4.52
322 331 2.867624 AGAGCATTGTTGGCAGAAAGA 58.132 42.857 0.00 0.00 0.00 2.52
433 442 1.043816 CTCTCCACACTCCACACTGT 58.956 55.000 0.00 0.00 0.00 3.55
457 469 1.424493 GCTCGTCATGTGGTAGCAGC 61.424 60.000 0.00 0.00 33.38 5.25
549 563 0.526662 ACCACCTCGTTCTAGAAGCG 59.473 55.000 5.12 12.47 0.00 4.68
552 566 1.586564 CCTCGTTCTAGAAGCGCGG 60.587 63.158 8.83 16.48 0.00 6.46
591 614 1.152567 TGCCAACCAGAAACCCCAG 60.153 57.895 0.00 0.00 0.00 4.45
600 623 3.173151 CCAGAAACCCCAGCCTATTTTT 58.827 45.455 0.00 0.00 0.00 1.94
642 665 1.726791 GACACTACGCCACAATGACAG 59.273 52.381 0.00 0.00 0.00 3.51
739 762 0.672401 AGTGCCATTTCGTACACGGG 60.672 55.000 1.39 0.00 40.29 5.28
824 848 1.598685 CTACGCAAAACCCCACCGT 60.599 57.895 0.00 0.00 36.07 4.83
1313 1338 2.034687 AGAGCAATGCGGCCTTGT 59.965 55.556 17.30 6.38 0.00 3.16
1372 1397 1.451651 GCCGAAATCGTGCAAAAACAG 59.548 47.619 10.13 0.00 37.74 3.16
1388 1416 9.770097 TGCAAAAACAGTATTATGGAAAAATGA 57.230 25.926 0.00 0.00 0.00 2.57
1418 1446 5.163713 GGGAGCTGCTTTATTTGTAACTCAG 60.164 44.000 2.53 0.00 0.00 3.35
1424 1452 7.148239 GCTGCTTTATTTGTAACTCAGTGGTAT 60.148 37.037 0.00 0.00 0.00 2.73
1453 1481 6.039605 CAGTAATAATGTCATGTTCATGGCCA 59.960 38.462 8.56 8.56 0.00 5.36
1466 1495 1.881973 CATGGCCAATATTCTGGTCCG 59.118 52.381 10.96 0.00 40.63 4.79
1560 1590 4.894784 TCACTTGGCTAAACTAGAACTGG 58.105 43.478 0.00 0.00 0.00 4.00
1563 1593 3.975168 TGGCTAAACTAGAACTGGACC 57.025 47.619 0.00 0.00 0.00 4.46
1566 1596 2.353406 GCTAAACTAGAACTGGACCGCA 60.353 50.000 0.00 0.00 0.00 5.69
1595 1625 4.031765 CCGACAATATGAGAAACTGTCACG 59.968 45.833 0.00 0.00 36.95 4.35
1610 1640 5.050490 ACTGTCACGATATGTAGCCAAATC 58.950 41.667 0.00 0.00 0.00 2.17
1719 1749 6.202570 GGTTCATAGCTGAAATTTGCAACAAA 59.797 34.615 0.00 0.00 42.85 2.83
1758 1788 4.683501 GCAAAGCCATTAAAAATGTGGG 57.316 40.909 0.00 0.00 33.58 4.61
1759 1789 3.119884 GCAAAGCCATTAAAAATGTGGGC 60.120 43.478 0.00 0.00 41.65 5.36
1785 1815 1.691195 TTGGTTGCTCGGACCTGTGA 61.691 55.000 0.00 0.00 38.04 3.58
1818 1848 1.067565 CAGTAGACACACACATCCGCT 60.068 52.381 0.00 0.00 0.00 5.52
1871 1948 6.915300 GCTAGGATATCATAGTATCAACGCAG 59.085 42.308 21.89 0.00 33.64 5.18
2042 2121 2.576191 TGGATAGTTTGCCTACTGCCTT 59.424 45.455 0.00 0.00 40.16 4.35
2448 2652 2.688477 AGATGCAGGGTTTTTGGGAAA 58.312 42.857 0.00 0.00 0.00 3.13
2714 2918 5.244402 TGAGGTTTTATGTTGTCTAGGACGA 59.756 40.000 0.00 0.00 34.95 4.20
2796 3000 2.762745 TCTTAGCAACGTTGTCCTTCC 58.237 47.619 27.78 11.27 0.00 3.46
2987 3191 8.970691 ATAATTGTGTGTTTATCTGTGCTTTC 57.029 30.769 0.00 0.00 0.00 2.62
3055 3259 5.428253 AGCACTAATATCGGTGACAAATGT 58.572 37.500 10.86 0.00 35.69 2.71
3217 3423 0.770499 TGCATCCTTCACTTGGTCCA 59.230 50.000 0.00 0.00 0.00 4.02
3551 3757 4.037446 TGAGGCCACAAAAACATCAAGTAC 59.963 41.667 5.01 0.00 0.00 2.73
3659 3866 3.815856 TTGCTCTGGATCTGAAGCTAG 57.184 47.619 12.64 0.00 0.00 3.42
3663 3870 3.888930 GCTCTGGATCTGAAGCTAGTAGT 59.111 47.826 0.00 0.00 0.00 2.73
3689 3896 6.095860 TCCCTTCAGTCATTTGCATCATTTAG 59.904 38.462 0.00 0.00 0.00 1.85
4388 4602 0.178995 TGTGGCCAGTGCTTCATCAA 60.179 50.000 5.11 0.00 37.74 2.57
4438 4652 6.662755 TGGGTTATCAGATGAGCATAAACTT 58.337 36.000 6.70 0.00 0.00 2.66
4460 4674 6.317893 ACTTGTTCATTTTCCTGTACGAGTTT 59.682 34.615 0.00 0.00 37.69 2.66
4462 4676 4.742438 TCATTTTCCTGTACGAGTTTGC 57.258 40.909 0.00 0.00 0.00 3.68
4546 4760 0.760945 CTGGTAGTAGAGCCTGGGGG 60.761 65.000 0.00 0.00 0.00 5.40
4556 4770 1.637035 GAGCCTGGGGGTTTTACCTTA 59.363 52.381 0.00 0.00 38.64 2.69
4606 4821 1.358103 TCTCCACCACTAGTAGGCTGT 59.642 52.381 0.00 0.00 0.00 4.40
4643 4858 4.040584 GGAGGTTTTTCTCACTCACCTAGT 59.959 45.833 0.00 0.00 38.01 2.57
5084 5299 3.467374 TCTTCTATGCACACACACACA 57.533 42.857 0.00 0.00 0.00 3.72
5088 5303 1.939255 CTATGCACACACACACACACA 59.061 47.619 0.00 0.00 0.00 3.72
5089 5304 0.451383 ATGCACACACACACACACAC 59.549 50.000 0.00 0.00 0.00 3.82
5090 5305 0.886490 TGCACACACACACACACACA 60.886 50.000 0.00 0.00 0.00 3.72
5091 5306 0.454285 GCACACACACACACACACAC 60.454 55.000 0.00 0.00 0.00 3.82
5092 5307 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
5093 5308 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
5094 5309 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
5095 5310 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
5096 5311 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
5097 5312 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
5098 5313 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
5099 5314 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
5100 5315 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
5101 5316 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
5102 5317 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
5103 5318 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
5104 5319 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
5105 5320 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
5106 5321 1.155889 CACACACACACACACACACT 58.844 50.000 0.00 0.00 0.00 3.55
5107 5322 1.136000 CACACACACACACACACACTG 60.136 52.381 0.00 0.00 0.00 3.66
5108 5323 1.155889 CACACACACACACACACTGT 58.844 50.000 0.00 0.00 0.00 3.55
5158 5373 1.003118 AGCAGAACCTCGTATGCCAAA 59.997 47.619 0.00 0.00 39.51 3.28
5249 5464 2.419851 GCCTGCAGATAAGTCAGAGCTT 60.420 50.000 17.39 0.00 0.00 3.74
5331 5546 9.643693 ACAATATTGAAATTGTTGGACATTCTC 57.356 29.630 22.16 0.00 45.54 2.87
5451 5682 9.860898 AGAGCTTGATTGGTTATTATTTTGTTC 57.139 29.630 0.00 0.00 0.00 3.18
5569 5836 1.732417 TTGCATTGTTGGCAGCGTCA 61.732 50.000 0.00 0.00 43.05 4.35
5570 5837 1.730547 GCATTGTTGGCAGCGTCAC 60.731 57.895 0.00 0.00 0.00 3.67
5626 5894 2.830104 CGCATCTGACTCAATCCATGA 58.170 47.619 0.00 0.00 36.38 3.07
5658 5926 2.026262 GCACAACAGATCTTTCCCCCTA 60.026 50.000 0.00 0.00 0.00 3.53
5783 6051 9.334693 CTTCTATGTTCTTGCAATTGTTAACTC 57.665 33.333 7.40 0.00 0.00 3.01
5802 6070 8.847196 GTTAACTCTTGAGTTCACCCTAAATTT 58.153 33.333 17.89 0.00 33.59 1.82
5805 6073 9.588096 AACTCTTGAGTTCACCCTAAATTTATT 57.412 29.630 9.93 0.00 0.00 1.40
5806 6074 9.588096 ACTCTTGAGTTCACCCTAAATTTATTT 57.412 29.630 0.00 0.00 0.00 1.40
5811 6079 9.974980 TGAGTTCACCCTAAATTTATTTTTGAC 57.025 29.630 0.00 0.00 0.00 3.18
5812 6080 9.974980 GAGTTCACCCTAAATTTATTTTTGACA 57.025 29.630 0.00 0.00 0.00 3.58
5815 6083 9.936759 TTCACCCTAAATTTATTTTTGACATCC 57.063 29.630 0.00 0.00 0.00 3.51
5816 6084 8.536175 TCACCCTAAATTTATTTTTGACATCCC 58.464 33.333 0.00 0.00 0.00 3.85
5817 6085 7.768582 CACCCTAAATTTATTTTTGACATCCCC 59.231 37.037 0.00 0.00 0.00 4.81
5818 6086 6.983890 CCCTAAATTTATTTTTGACATCCCCG 59.016 38.462 0.00 0.00 0.00 5.73
5819 6087 6.478673 CCTAAATTTATTTTTGACATCCCCGC 59.521 38.462 0.00 0.00 0.00 6.13
5820 6088 5.413309 AATTTATTTTTGACATCCCCGCA 57.587 34.783 0.00 0.00 0.00 5.69
5821 6089 4.873746 TTTATTTTTGACATCCCCGCAA 57.126 36.364 0.00 0.00 0.00 4.85
5822 6090 4.873746 TTATTTTTGACATCCCCGCAAA 57.126 36.364 0.00 0.00 0.00 3.68
5823 6091 3.760580 ATTTTTGACATCCCCGCAAAA 57.239 38.095 0.00 0.00 39.08 2.44
5824 6092 3.543680 TTTTTGACATCCCCGCAAAAA 57.456 38.095 0.00 0.00 44.47 1.94
6008 6276 8.149973 TCAAATTTCTGTACCAGTGAACTTAC 57.850 34.615 0.00 0.00 32.61 2.34
6200 6468 9.880157 ATACTTCGCCAAATTCTACTAAAGTTA 57.120 29.630 0.00 0.00 0.00 2.24
6619 6887 9.227777 AGTTACAGGTTACCTCATTCAAATAAC 57.772 33.333 0.00 1.47 0.00 1.89
6620 6888 9.005777 GTTACAGGTTACCTCATTCAAATAACA 57.994 33.333 0.00 0.00 0.00 2.41
6657 6925 0.102481 GCTCCGGATCACACGTGTAT 59.898 55.000 22.90 14.84 0.00 2.29
6832 7100 5.417580 GCAGGATTTTATGGACCTTGTTGTA 59.582 40.000 0.00 0.00 0.00 2.41
7863 8180 1.215244 ATGATCATGCGCTCTTCACG 58.785 50.000 7.59 0.00 0.00 4.35
7930 8248 1.667595 TGGGTCCATCCTGATGAACA 58.332 50.000 8.69 0.03 41.20 3.18
7947 8265 2.821991 ACACTACTTGACCTCAGCAC 57.178 50.000 0.00 0.00 0.00 4.40
7984 8302 3.991051 GATAGCTAGGGCGCGCCA 61.991 66.667 46.88 29.80 44.37 5.69
7985 8303 3.302347 GATAGCTAGGGCGCGCCAT 62.302 63.158 46.88 43.77 44.37 4.40
8002 8320 3.997021 CGCCATTCTTAGACATACCATCC 59.003 47.826 0.00 0.00 0.00 3.51
8073 8392 2.262423 AAGCCTCTGGTGTCAACTTC 57.738 50.000 0.00 0.00 0.00 3.01
8108 8427 3.951037 TGTTGTAACTTTGACACCAGCAT 59.049 39.130 0.00 0.00 0.00 3.79
8190 8571 4.646492 GCTGGGTCTACATTTTCATGGATT 59.354 41.667 0.00 0.00 34.27 3.01
8240 8621 4.543590 AGTGGTATTCTGAACTGTGGAG 57.456 45.455 0.00 0.00 0.00 3.86
8249 8630 3.322254 TCTGAACTGTGGAGTTTCCTCTC 59.678 47.826 0.00 0.00 42.80 3.20
8251 8632 3.322254 TGAACTGTGGAGTTTCCTCTCTC 59.678 47.826 0.00 0.00 42.80 3.20
8252 8633 3.252554 ACTGTGGAGTTTCCTCTCTCT 57.747 47.619 0.00 0.00 37.46 3.10
8253 8634 3.582164 ACTGTGGAGTTTCCTCTCTCTT 58.418 45.455 0.00 0.00 37.46 2.85
8254 8635 3.970640 ACTGTGGAGTTTCCTCTCTCTTT 59.029 43.478 0.00 0.00 37.46 2.52
8255 8636 4.410555 ACTGTGGAGTTTCCTCTCTCTTTT 59.589 41.667 0.00 0.00 37.46 2.27
8256 8637 5.104318 ACTGTGGAGTTTCCTCTCTCTTTTT 60.104 40.000 0.00 0.00 37.46 1.94
8257 8638 5.368989 TGTGGAGTTTCCTCTCTCTTTTTC 58.631 41.667 0.00 0.00 37.46 2.29
8278 8659 8.912787 TTTTCTTTTTGTTGTTGCTCGTATTA 57.087 26.923 0.00 0.00 0.00 0.98
8279 8660 8.912787 TTTCTTTTTGTTGTTGCTCGTATTAA 57.087 26.923 0.00 0.00 0.00 1.40
8301 8682 9.889128 ATTAAACTTGCCTTGTTTTGCATATAT 57.111 25.926 0.00 0.00 38.41 0.86
8305 8686 6.982141 ACTTGCCTTGTTTTGCATATATCATG 59.018 34.615 0.00 0.00 37.33 3.07
8342 8723 3.863400 GCACCACAGAGTACATTTACGGT 60.863 47.826 0.00 0.00 32.93 4.83
8343 8724 4.618927 GCACCACAGAGTACATTTACGGTA 60.619 45.833 0.00 0.00 32.93 4.02
8344 8725 4.860907 CACCACAGAGTACATTTACGGTAC 59.139 45.833 0.00 0.00 41.05 3.34
8345 8726 4.523943 ACCACAGAGTACATTTACGGTACA 59.476 41.667 0.00 0.00 42.73 2.90
8373 8754 0.729140 GACTTTGTTTGGCGATGCGG 60.729 55.000 0.00 0.00 0.00 5.69
8382 8763 4.465512 GCGATGCGGCAAGGTGTG 62.466 66.667 6.82 0.00 0.00 3.82
8407 8788 2.270986 CCTTTGGACCAGGCTGCAC 61.271 63.158 9.56 4.78 0.00 4.57
8434 8815 0.602638 TGATTGAAGCGCAACGTCCT 60.603 50.000 11.47 0.00 39.78 3.85
8447 8828 2.452813 CGTCCTCGGCCGACAAATG 61.453 63.158 27.28 14.61 0.00 2.32
8458 8839 2.099098 GCCGACAAATGTTATGGGAAGG 59.901 50.000 0.00 0.00 0.00 3.46
8490 8871 4.114015 TCAGTAGAAAGGTCCTCTCACA 57.886 45.455 0.00 0.00 0.00 3.58
8491 8872 4.678256 TCAGTAGAAAGGTCCTCTCACAT 58.322 43.478 0.00 0.00 0.00 3.21
8499 8880 1.002430 GGTCCTCTCACATGAAGCACA 59.998 52.381 0.00 0.00 0.00 4.57
8563 8944 1.202891 GGGCTAAGTGTTGTCCTTGGT 60.203 52.381 0.00 0.00 0.00 3.67
8593 8974 1.938577 CACGCATTCAATCCTCTCTGG 59.061 52.381 0.00 0.00 37.10 3.86
8597 8978 2.573369 CATTCAATCCTCTCTGGCAGG 58.427 52.381 15.73 5.63 35.26 4.85
8623 9008 2.304761 TGGGCGAGGAAAATCAAGTAGT 59.695 45.455 0.00 0.00 0.00 2.73
8624 9009 3.516300 TGGGCGAGGAAAATCAAGTAGTA 59.484 43.478 0.00 0.00 0.00 1.82
8625 9010 4.120589 GGGCGAGGAAAATCAAGTAGTAG 58.879 47.826 0.00 0.00 0.00 2.57
8668 9053 1.224069 CTGCTGGTGTCTGACAACCG 61.224 60.000 22.15 17.13 34.14 4.44
8716 9106 9.918630 CCAATGACTTGAAATAGACAAAGATTT 57.081 29.630 0.00 0.00 34.04 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.852536 GCTATATAACACGGATGCGTCTC 59.147 47.826 10.14 0.00 0.00 3.36
2 3 3.571571 TGCTATATAACACGGATGCGTC 58.428 45.455 10.14 0.00 0.00 5.19
3 4 3.653539 TGCTATATAACACGGATGCGT 57.346 42.857 6.39 6.39 0.00 5.24
4 5 4.173256 TCATGCTATATAACACGGATGCG 58.827 43.478 4.58 4.58 0.00 4.73
5 6 6.480524 TTTCATGCTATATAACACGGATGC 57.519 37.500 0.00 0.00 0.00 3.91
6 7 8.720562 TCATTTTCATGCTATATAACACGGATG 58.279 33.333 0.00 0.00 0.00 3.51
7 8 8.846943 TCATTTTCATGCTATATAACACGGAT 57.153 30.769 0.00 0.00 0.00 4.18
8 9 8.846943 ATCATTTTCATGCTATATAACACGGA 57.153 30.769 0.00 0.00 0.00 4.69
17 18 9.695526 GCCAATTGTAATCATTTTCATGCTATA 57.304 29.630 4.43 0.00 0.00 1.31
18 19 7.383029 CGCCAATTGTAATCATTTTCATGCTAT 59.617 33.333 4.43 0.00 0.00 2.97
19 20 6.696583 CGCCAATTGTAATCATTTTCATGCTA 59.303 34.615 4.43 0.00 0.00 3.49
20 21 5.521010 CGCCAATTGTAATCATTTTCATGCT 59.479 36.000 4.43 0.00 0.00 3.79
21 22 5.730269 CGCCAATTGTAATCATTTTCATGC 58.270 37.500 4.43 0.00 0.00 4.06
22 23 5.291371 TGCGCCAATTGTAATCATTTTCATG 59.709 36.000 4.18 0.00 0.00 3.07
23 24 5.417811 TGCGCCAATTGTAATCATTTTCAT 58.582 33.333 4.18 0.00 0.00 2.57
24 25 4.814147 TGCGCCAATTGTAATCATTTTCA 58.186 34.783 4.18 0.00 0.00 2.69
25 26 4.268405 CCTGCGCCAATTGTAATCATTTTC 59.732 41.667 4.18 0.00 0.00 2.29
26 27 4.183101 CCTGCGCCAATTGTAATCATTTT 58.817 39.130 4.18 0.00 0.00 1.82
27 28 3.195396 ACCTGCGCCAATTGTAATCATTT 59.805 39.130 4.18 0.00 0.00 2.32
28 29 2.760092 ACCTGCGCCAATTGTAATCATT 59.240 40.909 4.18 0.00 0.00 2.57
29 30 2.378038 ACCTGCGCCAATTGTAATCAT 58.622 42.857 4.18 0.00 0.00 2.45
30 31 1.832883 ACCTGCGCCAATTGTAATCA 58.167 45.000 4.18 0.00 0.00 2.57
31 32 2.094752 ACAACCTGCGCCAATTGTAATC 60.095 45.455 15.96 0.00 33.59 1.75
32 33 1.892474 ACAACCTGCGCCAATTGTAAT 59.108 42.857 15.96 0.00 33.59 1.89
33 34 1.323412 ACAACCTGCGCCAATTGTAA 58.677 45.000 15.96 0.00 33.59 2.41
34 35 1.323412 AACAACCTGCGCCAATTGTA 58.677 45.000 17.31 0.00 34.24 2.41
35 36 1.000717 GTAACAACCTGCGCCAATTGT 60.001 47.619 4.18 9.77 36.86 2.71
36 37 1.269448 AGTAACAACCTGCGCCAATTG 59.731 47.619 4.18 9.06 0.00 2.32
37 38 1.616159 AGTAACAACCTGCGCCAATT 58.384 45.000 4.18 0.00 0.00 2.32
38 39 2.290071 ACTAGTAACAACCTGCGCCAAT 60.290 45.455 4.18 0.00 0.00 3.16
39 40 1.071071 ACTAGTAACAACCTGCGCCAA 59.929 47.619 4.18 0.00 0.00 4.52
40 41 0.682852 ACTAGTAACAACCTGCGCCA 59.317 50.000 4.18 0.00 0.00 5.69
41 42 1.067071 AGACTAGTAACAACCTGCGCC 60.067 52.381 4.18 0.00 0.00 6.53
42 43 2.365408 AGACTAGTAACAACCTGCGC 57.635 50.000 0.00 0.00 0.00 6.09
43 44 3.120649 GCAAAGACTAGTAACAACCTGCG 60.121 47.826 0.00 0.00 0.00 5.18
44 45 4.065789 AGCAAAGACTAGTAACAACCTGC 58.934 43.478 0.00 0.00 0.00 4.85
45 46 5.542779 AGAGCAAAGACTAGTAACAACCTG 58.457 41.667 0.00 0.00 0.00 4.00
46 47 5.810080 AGAGCAAAGACTAGTAACAACCT 57.190 39.130 0.00 0.00 0.00 3.50
47 48 6.689554 AGTAGAGCAAAGACTAGTAACAACC 58.310 40.000 0.00 0.00 0.00 3.77
48 49 6.807720 GGAGTAGAGCAAAGACTAGTAACAAC 59.192 42.308 0.00 0.00 0.00 3.32
49 50 6.492429 TGGAGTAGAGCAAAGACTAGTAACAA 59.508 38.462 0.00 0.00 0.00 2.83
50 51 6.008331 TGGAGTAGAGCAAAGACTAGTAACA 58.992 40.000 0.00 0.00 0.00 2.41
51 52 6.512342 TGGAGTAGAGCAAAGACTAGTAAC 57.488 41.667 0.00 0.00 0.00 2.50
52 53 6.350277 GCTTGGAGTAGAGCAAAGACTAGTAA 60.350 42.308 0.00 0.00 38.73 2.24
53 54 5.125739 GCTTGGAGTAGAGCAAAGACTAGTA 59.874 44.000 0.00 0.00 38.73 1.82
54 55 4.081917 GCTTGGAGTAGAGCAAAGACTAGT 60.082 45.833 0.00 0.00 38.73 2.57
55 56 4.159506 AGCTTGGAGTAGAGCAAAGACTAG 59.840 45.833 0.00 0.00 41.31 2.57
56 57 4.090090 AGCTTGGAGTAGAGCAAAGACTA 58.910 43.478 0.00 0.00 41.31 2.59
57 58 2.903135 AGCTTGGAGTAGAGCAAAGACT 59.097 45.455 0.00 0.00 41.31 3.24
58 59 3.326836 AGCTTGGAGTAGAGCAAAGAC 57.673 47.619 0.00 0.00 41.31 3.01
59 60 5.656859 TGTATAGCTTGGAGTAGAGCAAAGA 59.343 40.000 0.00 0.00 41.31 2.52
60 61 5.907207 TGTATAGCTTGGAGTAGAGCAAAG 58.093 41.667 0.00 0.00 41.31 2.77
61 62 5.932619 TGTATAGCTTGGAGTAGAGCAAA 57.067 39.130 0.00 0.00 41.31 3.68
62 63 5.598417 TCATGTATAGCTTGGAGTAGAGCAA 59.402 40.000 0.00 0.00 41.31 3.91
63 64 5.140454 TCATGTATAGCTTGGAGTAGAGCA 58.860 41.667 0.00 0.00 41.31 4.26
64 65 5.713792 TCATGTATAGCTTGGAGTAGAGC 57.286 43.478 0.00 0.00 39.17 4.09
65 66 9.853555 CTTATTCATGTATAGCTTGGAGTAGAG 57.146 37.037 0.00 0.00 0.00 2.43
66 67 9.588096 TCTTATTCATGTATAGCTTGGAGTAGA 57.412 33.333 0.00 0.00 0.00 2.59
69 70 8.874156 TGATCTTATTCATGTATAGCTTGGAGT 58.126 33.333 0.00 0.00 0.00 3.85
70 71 9.716531 TTGATCTTATTCATGTATAGCTTGGAG 57.283 33.333 0.00 0.00 0.00 3.86
71 72 9.494271 GTTGATCTTATTCATGTATAGCTTGGA 57.506 33.333 0.00 0.00 0.00 3.53
72 73 8.725148 GGTTGATCTTATTCATGTATAGCTTGG 58.275 37.037 0.00 0.00 0.00 3.61
73 74 8.725148 GGGTTGATCTTATTCATGTATAGCTTG 58.275 37.037 0.00 0.00 0.00 4.01
74 75 8.664079 AGGGTTGATCTTATTCATGTATAGCTT 58.336 33.333 0.00 0.00 0.00 3.74
75 76 8.212259 AGGGTTGATCTTATTCATGTATAGCT 57.788 34.615 0.00 0.00 0.00 3.32
76 77 8.854614 AAGGGTTGATCTTATTCATGTATAGC 57.145 34.615 0.00 0.00 0.00 2.97
78 79 9.944376 GCTAAGGGTTGATCTTATTCATGTATA 57.056 33.333 0.00 0.00 0.00 1.47
79 80 8.664079 AGCTAAGGGTTGATCTTATTCATGTAT 58.336 33.333 0.00 0.00 0.00 2.29
80 81 8.034313 AGCTAAGGGTTGATCTTATTCATGTA 57.966 34.615 0.00 0.00 0.00 2.29
81 82 6.904626 AGCTAAGGGTTGATCTTATTCATGT 58.095 36.000 0.00 0.00 0.00 3.21
82 83 8.778358 GTTAGCTAAGGGTTGATCTTATTCATG 58.222 37.037 6.38 0.00 0.00 3.07
83 84 8.494433 TGTTAGCTAAGGGTTGATCTTATTCAT 58.506 33.333 6.38 0.00 0.00 2.57
84 85 7.857456 TGTTAGCTAAGGGTTGATCTTATTCA 58.143 34.615 6.38 0.00 0.00 2.57
85 86 7.041712 GCTGTTAGCTAAGGGTTGATCTTATTC 60.042 40.741 6.38 0.00 38.45 1.75
86 87 6.768381 GCTGTTAGCTAAGGGTTGATCTTATT 59.232 38.462 6.38 0.00 38.45 1.40
87 88 6.292150 GCTGTTAGCTAAGGGTTGATCTTAT 58.708 40.000 6.38 0.00 38.45 1.73
88 89 5.396436 GGCTGTTAGCTAAGGGTTGATCTTA 60.396 44.000 6.38 0.00 41.99 2.10
89 90 4.518249 GCTGTTAGCTAAGGGTTGATCTT 58.482 43.478 6.38 0.00 38.45 2.40
90 91 3.118223 GGCTGTTAGCTAAGGGTTGATCT 60.118 47.826 6.38 0.00 41.99 2.75
91 92 3.118223 AGGCTGTTAGCTAAGGGTTGATC 60.118 47.826 6.38 0.00 41.99 2.92
92 93 2.846827 AGGCTGTTAGCTAAGGGTTGAT 59.153 45.455 6.38 0.00 41.99 2.57
93 94 2.027192 CAGGCTGTTAGCTAAGGGTTGA 60.027 50.000 6.38 0.00 41.99 3.18
94 95 2.359900 CAGGCTGTTAGCTAAGGGTTG 58.640 52.381 6.38 0.00 41.99 3.77
95 96 1.340114 GCAGGCTGTTAGCTAAGGGTT 60.340 52.381 17.16 0.00 41.99 4.11
96 97 0.253327 GCAGGCTGTTAGCTAAGGGT 59.747 55.000 17.16 0.00 41.99 4.34
97 98 0.543749 AGCAGGCTGTTAGCTAAGGG 59.456 55.000 17.16 3.91 41.99 3.95
98 99 2.168521 TGTAGCAGGCTGTTAGCTAAGG 59.831 50.000 17.16 4.28 41.96 2.69
99 100 3.526931 TGTAGCAGGCTGTTAGCTAAG 57.473 47.619 17.16 0.00 41.96 2.18
100 101 4.404394 TGTATGTAGCAGGCTGTTAGCTAA 59.596 41.667 17.16 0.86 41.96 3.09
101 102 3.958147 TGTATGTAGCAGGCTGTTAGCTA 59.042 43.478 17.16 8.29 41.99 3.32
102 103 2.766263 TGTATGTAGCAGGCTGTTAGCT 59.234 45.455 17.16 9.38 41.99 3.32
103 104 3.179443 TGTATGTAGCAGGCTGTTAGC 57.821 47.619 17.16 9.68 41.46 3.09
104 105 8.088365 TGTAATATGTATGTAGCAGGCTGTTAG 58.912 37.037 17.16 0.00 0.00 2.34
105 106 7.870954 GTGTAATATGTATGTAGCAGGCTGTTA 59.129 37.037 17.16 12.08 0.00 2.41
106 107 6.706270 GTGTAATATGTATGTAGCAGGCTGTT 59.294 38.462 17.16 13.28 0.00 3.16
107 108 6.223852 GTGTAATATGTATGTAGCAGGCTGT 58.776 40.000 17.16 5.61 0.00 4.40
108 109 5.346011 CGTGTAATATGTATGTAGCAGGCTG 59.654 44.000 10.94 10.94 0.00 4.85
109 110 5.470368 CGTGTAATATGTATGTAGCAGGCT 58.530 41.667 0.00 0.00 0.00 4.58
110 111 4.091509 GCGTGTAATATGTATGTAGCAGGC 59.908 45.833 0.00 0.00 0.00 4.85
111 112 5.118664 GTGCGTGTAATATGTATGTAGCAGG 59.881 44.000 0.00 0.00 0.00 4.85
112 113 5.164187 CGTGCGTGTAATATGTATGTAGCAG 60.164 44.000 0.00 0.00 0.00 4.24
113 114 4.677832 CGTGCGTGTAATATGTATGTAGCA 59.322 41.667 0.00 0.00 0.00 3.49
114 115 4.432503 GCGTGCGTGTAATATGTATGTAGC 60.433 45.833 0.00 0.00 0.00 3.58
115 116 4.677832 TGCGTGCGTGTAATATGTATGTAG 59.322 41.667 0.00 0.00 0.00 2.74
116 117 4.441744 GTGCGTGCGTGTAATATGTATGTA 59.558 41.667 0.00 0.00 0.00 2.29
117 118 3.244345 GTGCGTGCGTGTAATATGTATGT 59.756 43.478 0.00 0.00 0.00 2.29
118 119 3.362596 GGTGCGTGCGTGTAATATGTATG 60.363 47.826 0.00 0.00 0.00 2.39
119 120 2.798283 GGTGCGTGCGTGTAATATGTAT 59.202 45.455 0.00 0.00 0.00 2.29
120 121 2.195096 GGTGCGTGCGTGTAATATGTA 58.805 47.619 0.00 0.00 0.00 2.29
121 122 1.003851 GGTGCGTGCGTGTAATATGT 58.996 50.000 0.00 0.00 0.00 2.29
122 123 1.003108 TGGTGCGTGCGTGTAATATG 58.997 50.000 0.00 0.00 0.00 1.78
123 124 1.395608 GTTGGTGCGTGCGTGTAATAT 59.604 47.619 0.00 0.00 0.00 1.28
124 125 0.791422 GTTGGTGCGTGCGTGTAATA 59.209 50.000 0.00 0.00 0.00 0.98
125 126 1.572447 GTTGGTGCGTGCGTGTAAT 59.428 52.632 0.00 0.00 0.00 1.89
126 127 2.535788 GGTTGGTGCGTGCGTGTAA 61.536 57.895 0.00 0.00 0.00 2.41
127 128 2.085042 TAGGTTGGTGCGTGCGTGTA 62.085 55.000 0.00 0.00 0.00 2.90
128 129 2.725203 ATAGGTTGGTGCGTGCGTGT 62.725 55.000 0.00 0.00 0.00 4.49
129 130 0.738063 TATAGGTTGGTGCGTGCGTG 60.738 55.000 0.00 0.00 0.00 5.34
130 131 0.738412 GTATAGGTTGGTGCGTGCGT 60.738 55.000 0.00 0.00 0.00 5.24
131 132 0.738063 TGTATAGGTTGGTGCGTGCG 60.738 55.000 0.00 0.00 0.00 5.34
132 133 1.444836 TTGTATAGGTTGGTGCGTGC 58.555 50.000 0.00 0.00 0.00 5.34
133 134 4.155099 TGAAATTGTATAGGTTGGTGCGTG 59.845 41.667 0.00 0.00 0.00 5.34
134 135 4.155280 GTGAAATTGTATAGGTTGGTGCGT 59.845 41.667 0.00 0.00 0.00 5.24
135 136 4.155099 TGTGAAATTGTATAGGTTGGTGCG 59.845 41.667 0.00 0.00 0.00 5.34
160 161 2.224066 GCGGCACTGTTAGATGATAGGT 60.224 50.000 0.00 0.00 0.00 3.08
189 190 1.950216 CTGATACAGACTAGCAGGCGA 59.050 52.381 0.00 0.00 32.44 5.54
257 258 3.671008 TCAAATCTTGCTTGCTTGCAT 57.329 38.095 5.15 0.00 42.96 3.96
293 298 4.201940 TGCCAACAATGCTCTTATTGATCG 60.202 41.667 5.58 0.00 39.79 3.69
300 309 4.397420 TCTTTCTGCCAACAATGCTCTTA 58.603 39.130 0.00 0.00 0.00 2.10
302 311 2.867624 TCTTTCTGCCAACAATGCTCT 58.132 42.857 0.00 0.00 0.00 4.09
307 316 6.165700 AGATGTTTTCTTTCTGCCAACAAT 57.834 33.333 0.00 0.00 31.39 2.71
315 324 4.741676 GCACCACAAGATGTTTTCTTTCTG 59.258 41.667 0.00 0.00 42.15 3.02
322 331 0.031994 GGCGCACCACAAGATGTTTT 59.968 50.000 10.83 0.00 35.26 2.43
433 442 2.416836 GCTACCACATGACGAGCAACTA 60.417 50.000 0.00 0.00 33.26 2.24
549 563 1.941812 CGTGGGAGATTAATGCCGC 59.058 57.895 0.00 0.00 37.78 6.53
552 566 1.941812 CCGCGTGGGAGATTAATGC 59.058 57.895 7.26 0.00 38.47 3.56
580 601 3.831911 TGAAAAATAGGCTGGGGTTTCTG 59.168 43.478 0.00 0.00 0.00 3.02
591 614 7.383300 GGCTACATTTGATGATGAAAAATAGGC 59.617 37.037 8.24 8.24 32.03 3.93
600 623 3.494924 CGGAGGGCTACATTTGATGATGA 60.495 47.826 0.00 0.00 0.00 2.92
704 727 5.565592 TGGCACTATTTTAGCATTGACAG 57.434 39.130 0.00 0.00 0.00 3.51
739 762 1.841450 CGCTCTCATACGGAAAGGTC 58.159 55.000 0.00 0.00 0.00 3.85
870 895 2.587194 CGAGGCGATTGCTGGAGG 60.587 66.667 4.59 0.00 42.25 4.30
1372 1397 9.586435 CTCCCAAAACTCATTTTTCCATAATAC 57.414 33.333 0.00 0.00 35.79 1.89
1388 1416 4.344968 ACAAATAAAGCAGCTCCCAAAACT 59.655 37.500 0.00 0.00 0.00 2.66
1389 1417 4.631131 ACAAATAAAGCAGCTCCCAAAAC 58.369 39.130 0.00 0.00 0.00 2.43
1453 1481 2.505819 AGAAGCACCGGACCAGAATATT 59.494 45.455 9.46 0.00 0.00 1.28
1466 1495 0.951558 TTGCCTTTTCGAGAAGCACC 59.048 50.000 10.12 2.02 0.00 5.01
1521 1551 7.885399 AGCCAAGTGAGTTGAGATAAACTAATT 59.115 33.333 0.68 0.00 40.48 1.40
1530 1560 5.234466 AGTTTAGCCAAGTGAGTTGAGAT 57.766 39.130 0.68 0.00 38.60 2.75
1544 1574 2.889852 CGGTCCAGTTCTAGTTTAGCC 58.110 52.381 0.00 0.00 0.00 3.93
1560 1590 4.980805 TGTCGGCCTGTTGCGGTC 62.981 66.667 0.00 0.00 42.61 4.79
1563 1593 0.027979 CATATTGTCGGCCTGTTGCG 59.972 55.000 0.00 0.00 42.61 4.85
1566 1596 3.627395 TTCTCATATTGTCGGCCTGTT 57.373 42.857 0.00 0.00 0.00 3.16
1595 1625 3.600388 CCTCCCGATTTGGCTACATATC 58.400 50.000 0.00 0.00 35.87 1.63
1610 1640 4.489771 GACCATGGCACCCTCCCG 62.490 72.222 13.04 0.00 0.00 5.14
1719 1749 6.101997 GCTTTGCCATAGTTTAGCAGAAAAT 58.898 36.000 0.00 0.00 37.89 1.82
1758 1788 1.269448 TCCGAGCAACCAATTTCTTGC 59.731 47.619 8.28 8.28 42.67 4.01
1759 1789 2.351738 GGTCCGAGCAACCAATTTCTTG 60.352 50.000 0.00 0.00 36.75 3.02
1785 1815 4.588951 TGTGTCTACTGATTGTTCCACTCT 59.411 41.667 0.00 0.00 0.00 3.24
1804 1834 0.320421 GGTGTAGCGGATGTGTGTGT 60.320 55.000 0.00 0.00 0.00 3.72
1807 1837 0.321210 TTGGGTGTAGCGGATGTGTG 60.321 55.000 0.00 0.00 0.00 3.82
1818 1848 8.927675 ACAGAATAAAGTAATGTTTGGGTGTA 57.072 30.769 0.00 0.00 0.00 2.90
1871 1948 5.237996 GGGTAAGATATTTAACGGACTTGGC 59.762 44.000 0.00 0.00 0.00 4.52
1981 2060 0.895100 GGAAGTGGTGCCATTGAGCA 60.895 55.000 0.00 0.00 41.46 4.26
2032 2111 4.273148 ACTAACACTTCAAGGCAGTAGG 57.727 45.455 0.00 0.00 0.00 3.18
2410 2614 9.294030 CCTGCATCTAACAAACTAAATGATTTC 57.706 33.333 0.00 0.00 0.00 2.17
2430 2634 2.305635 GGATTTCCCAAAAACCCTGCAT 59.694 45.455 0.00 0.00 32.58 3.96
2714 2918 4.636648 CCAGAGACATACGAGTACTTCACT 59.363 45.833 0.00 0.00 41.47 3.41
2796 3000 0.036010 CAGTACACTCCTGGCAAGGG 60.036 60.000 7.48 0.11 44.62 3.95
2987 3191 3.399330 AGTATCAGGAAACCACAACGTG 58.601 45.455 0.00 0.00 0.00 4.49
3551 3757 3.797039 TGAGGCCTCGATCAAATAACAG 58.203 45.455 27.43 0.00 0.00 3.16
3659 3866 4.072131 TGCAAATGACTGAAGGGAACTAC 58.928 43.478 0.00 0.00 42.68 2.73
3663 3870 3.765381 TGATGCAAATGACTGAAGGGAA 58.235 40.909 0.00 0.00 0.00 3.97
3689 3896 7.702348 GGCTGGATGAAAATGTAGTTATCAAAC 59.298 37.037 0.00 0.00 35.72 2.93
4048 4259 1.939934 CCTCACGTTTTGTCTGCAAGA 59.060 47.619 0.00 0.00 43.69 3.02
4049 4260 1.597937 GCCTCACGTTTTGTCTGCAAG 60.598 52.381 0.00 0.00 35.82 4.01
4050 4261 0.380378 GCCTCACGTTTTGTCTGCAA 59.620 50.000 0.00 0.00 0.00 4.08
4388 4602 4.638865 GGAAAAAGGTGTACATAATCGCCT 59.361 41.667 0.00 0.00 45.01 5.52
4438 4652 5.504994 GCAAACTCGTACAGGAAAATGAACA 60.505 40.000 0.00 0.00 0.00 3.18
4460 4674 0.391130 CCGCCTACTGCTAACAAGCA 60.391 55.000 0.00 0.00 43.22 3.91
4462 4676 0.391130 TGCCGCCTACTGCTAACAAG 60.391 55.000 0.00 0.00 38.05 3.16
4695 4910 5.160607 ACCAGAAGACAACGGATCAAATA 57.839 39.130 0.00 0.00 0.00 1.40
5084 5299 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
5088 5303 1.155889 CAGTGTGTGTGTGTGTGTGT 58.844 50.000 0.00 0.00 0.00 3.72
5089 5304 1.155889 ACAGTGTGTGTGTGTGTGTG 58.844 50.000 0.00 0.00 38.28 3.82
5090 5305 3.623848 ACAGTGTGTGTGTGTGTGT 57.376 47.368 0.00 0.00 38.28 3.72
5116 5331 3.252215 TGTATTGCGCTGTGCTAGTTTTT 59.748 39.130 14.92 0.00 46.63 1.94
5117 5332 2.811431 TGTATTGCGCTGTGCTAGTTTT 59.189 40.909 14.92 0.00 46.63 2.43
5130 5345 0.647410 CGAGGTTCTGCTGTATTGCG 59.353 55.000 0.00 0.00 35.36 4.85
5158 5373 5.347635 GCGGTTGAAGTGTTCTTTTCTTTTT 59.652 36.000 0.00 0.00 33.64 1.94
5249 5464 5.451937 CGAAGATAAGAACCCAGCTGTCATA 60.452 44.000 13.81 1.58 0.00 2.15
5331 5546 0.103937 GCAGCTACAGCACCTCCTAG 59.896 60.000 3.70 0.00 45.16 3.02
5519 5750 1.213013 CAGTCTCGTGCGCCTAGTT 59.787 57.895 4.18 0.00 0.00 2.24
5569 5836 1.227556 GGTGAGACTGGTTGCACGT 60.228 57.895 0.00 0.00 32.24 4.49
5570 5837 1.224069 CTGGTGAGACTGGTTGCACG 61.224 60.000 0.00 0.00 32.24 5.34
5626 5894 0.596577 CTGTTGTGCAGCTGCTCATT 59.403 50.000 35.98 0.00 42.97 2.57
5802 6070 4.873746 TTTTGCGGGGATGTCAAAAATA 57.126 36.364 0.00 0.00 36.93 1.40
5803 6071 3.760580 TTTTGCGGGGATGTCAAAAAT 57.239 38.095 0.00 0.00 36.93 1.82
5804 6072 3.543680 TTTTTGCGGGGATGTCAAAAA 57.456 38.095 7.69 7.69 43.27 1.94
5849 6117 9.594038 GCATATAATAACACTGGTTAATTGTCG 57.406 33.333 0.00 0.00 42.43 4.35
6167 6435 5.010282 AGAATTTGGCGAAGTATCCTTTGT 58.990 37.500 0.00 0.00 34.93 2.83
6200 6468 2.104792 TGAAGCCACTCACTAGTTTGCT 59.895 45.455 0.00 0.00 41.01 3.91
6588 6856 7.970102 TGAATGAGGTAACCTGTAACTACTTT 58.030 34.615 0.00 0.00 31.76 2.66
6657 6925 6.984474 CGACTGCCCTTCAGATAAACTTATTA 59.016 38.462 0.00 0.00 45.72 0.98
6799 7067 1.305201 TAAAATCCTGCCGATTCGCC 58.695 50.000 0.00 0.00 40.47 5.54
6832 7100 0.609131 CAAGGAACATGCGAGGGGTT 60.609 55.000 0.00 0.00 0.00 4.11
7863 8180 5.661458 TCTACAGCTTCCTAACTTATGCAC 58.339 41.667 0.00 0.00 0.00 4.57
7930 8248 2.320781 ACAGTGCTGAGGTCAAGTAGT 58.679 47.619 6.17 0.00 0.00 2.73
7947 8265 6.238320 GCTATCAGGAAAGCTGAATACAACAG 60.238 42.308 0.00 0.00 35.80 3.16
7984 8302 6.281405 GTTGACGGATGGTATGTCTAAGAAT 58.719 40.000 0.00 0.00 33.81 2.40
7985 8303 5.657474 GTTGACGGATGGTATGTCTAAGAA 58.343 41.667 0.00 0.00 33.81 2.52
8002 8320 3.569049 AAGCCGGTCTCCGTTGACG 62.569 63.158 1.90 0.00 46.80 4.35
8108 8427 7.766738 TCAGATTTTACAGGCGAAACATACATA 59.233 33.333 0.00 0.00 0.00 2.29
8190 8571 5.983118 CACATATTCAGTAAGCACGATGGTA 59.017 40.000 0.00 0.00 0.00 3.25
8240 8621 8.864024 CAACAAAAAGAAAAAGAGAGAGGAAAC 58.136 33.333 0.00 0.00 0.00 2.78
8249 8630 6.089417 ACGAGCAACAACAAAAAGAAAAAGAG 59.911 34.615 0.00 0.00 0.00 2.85
8251 8632 6.151975 ACGAGCAACAACAAAAAGAAAAAG 57.848 33.333 0.00 0.00 0.00 2.27
8252 8633 7.820044 ATACGAGCAACAACAAAAAGAAAAA 57.180 28.000 0.00 0.00 0.00 1.94
8253 8634 7.820044 AATACGAGCAACAACAAAAAGAAAA 57.180 28.000 0.00 0.00 0.00 2.29
8254 8635 8.912787 TTAATACGAGCAACAACAAAAAGAAA 57.087 26.923 0.00 0.00 0.00 2.52
8255 8636 8.800031 GTTTAATACGAGCAACAACAAAAAGAA 58.200 29.630 0.00 0.00 0.00 2.52
8256 8637 8.185505 AGTTTAATACGAGCAACAACAAAAAGA 58.814 29.630 0.00 0.00 0.00 2.52
8257 8638 8.335256 AGTTTAATACGAGCAACAACAAAAAG 57.665 30.769 0.00 0.00 0.00 2.27
8278 8659 7.385267 TGATATATGCAAAACAAGGCAAGTTT 58.615 30.769 0.00 2.06 44.20 2.66
8279 8660 6.934056 TGATATATGCAAAACAAGGCAAGTT 58.066 32.000 0.00 0.00 44.20 2.66
8300 8681 2.951787 GCCACTTGGGGATTGACATGAT 60.952 50.000 0.00 0.00 37.04 2.45
8301 8682 1.616725 GCCACTTGGGGATTGACATGA 60.617 52.381 0.00 0.00 37.04 3.07
8305 8686 1.250840 GGTGCCACTTGGGGATTGAC 61.251 60.000 0.00 0.00 40.18 3.18
8342 8723 1.642728 ACAAAGTCAACGTGCGTGTA 58.357 45.000 0.00 0.00 0.00 2.90
8343 8724 0.800012 AACAAAGTCAACGTGCGTGT 59.200 45.000 0.00 0.00 0.00 4.49
8344 8725 1.577134 CAAACAAAGTCAACGTGCGTG 59.423 47.619 0.00 0.00 0.00 5.34
8345 8726 1.466697 CCAAACAAAGTCAACGTGCGT 60.467 47.619 0.00 0.00 0.00 5.24
8373 8754 1.451936 AGGTCACCTCACACCTTGC 59.548 57.895 0.00 0.00 40.35 4.01
8382 8763 0.036875 CCTGGTCCAAAGGTCACCTC 59.963 60.000 0.00 0.00 30.89 3.85
8407 8788 1.435488 CGCTTCAATCATACGCGCG 60.435 57.895 30.96 30.96 37.29 6.86
8412 8793 2.536928 GGACGTTGCGCTTCAATCATAC 60.537 50.000 9.73 0.00 36.99 2.39
8434 8815 1.374560 CCATAACATTTGTCGGCCGA 58.625 50.000 27.28 27.28 0.00 5.54
8439 8820 3.377172 GGACCTTCCCATAACATTTGTCG 59.623 47.826 0.00 0.00 0.00 4.35
8447 8828 1.829222 TCACTCGGACCTTCCCATAAC 59.171 52.381 0.00 0.00 31.13 1.89
8458 8839 4.082136 ACCTTTCTACTGATTCACTCGGAC 60.082 45.833 0.00 0.00 34.09 4.79
8490 8871 3.406764 GAGTGAAGGTCTTGTGCTTCAT 58.593 45.455 0.00 0.00 37.99 2.57
8491 8872 2.803133 CGAGTGAAGGTCTTGTGCTTCA 60.803 50.000 0.00 0.00 34.01 3.02
8499 8880 1.621992 TGAGAGCGAGTGAAGGTCTT 58.378 50.000 0.00 0.00 45.20 3.01
8593 8974 4.154347 CCTCGCCCACTCTCCTGC 62.154 72.222 0.00 0.00 0.00 4.85
8597 8978 1.066143 TGATTTTCCTCGCCCACTCTC 60.066 52.381 0.00 0.00 0.00 3.20
8602 8983 2.304761 ACTACTTGATTTTCCTCGCCCA 59.695 45.455 0.00 0.00 0.00 5.36
8623 9008 4.885907 ACTTGGACGCTTACTATACTGCTA 59.114 41.667 0.00 0.00 0.00 3.49
8624 9009 3.700038 ACTTGGACGCTTACTATACTGCT 59.300 43.478 0.00 0.00 0.00 4.24
8625 9010 4.043037 ACTTGGACGCTTACTATACTGC 57.957 45.455 0.00 0.00 0.00 4.40
8668 9053 1.033574 CTGTATCCTCGTCACCCTCC 58.966 60.000 0.00 0.00 0.00 4.30
8716 9106 4.667573 CCAGGATGAGGTATCTGCTACTA 58.332 47.826 0.00 0.00 39.69 1.82
8717 9107 3.505386 CCAGGATGAGGTATCTGCTACT 58.495 50.000 0.00 0.00 39.69 2.57
8718 9108 2.028567 GCCAGGATGAGGTATCTGCTAC 60.029 54.545 0.00 0.00 39.69 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.