Multiple sequence alignment - TraesCS3D01G388800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G388800 chr3D 100.000 7257 0 0 1 7257 504054009 504061265 0.000000e+00 13402.0
1 TraesCS3D01G388800 chr3D 94.144 222 9 4 1 218 21584169 21583948 1.170000e-87 335.0
2 TraesCS3D01G388800 chr3D 94.521 219 8 2 1 218 607570863 607570648 1.170000e-87 335.0
3 TraesCS3D01G388800 chr3B 95.447 6303 178 38 837 7099 665464365 665470598 0.000000e+00 9949.0
4 TraesCS3D01G388800 chr3B 94.144 222 9 3 1 219 623659219 623658999 1.170000e-87 335.0
5 TraesCS3D01G388800 chr3B 93.939 99 5 1 7151 7249 665475547 665475644 1.630000e-31 148.0
6 TraesCS3D01G388800 chr3B 90.909 77 6 1 7080 7156 665470612 665470687 1.290000e-17 102.0
7 TraesCS3D01G388800 chr3B 92.453 53 4 0 749 801 665464297 665464349 7.810000e-10 76.8
8 TraesCS3D01G388800 chr3B 100.000 28 0 0 672 699 665464161 665464188 1.300000e-02 52.8
9 TraesCS3D01G388800 chr3A 95.634 5497 182 17 1766 7249 642366066 642371517 0.000000e+00 8769.0
10 TraesCS3D01G388800 chr3A 90.231 1167 55 24 763 1894 642364927 642366069 0.000000e+00 1469.0
11 TraesCS3D01G388800 chr5B 93.299 985 51 4 1445 2418 540406596 540405616 0.000000e+00 1439.0
12 TraesCS3D01G388800 chr1B 93.319 943 48 3 1446 2377 35063229 35064167 0.000000e+00 1378.0
13 TraesCS3D01G388800 chr1B 91.373 255 10 7 1 251 486490926 486490680 9.020000e-89 339.0
14 TraesCS3D01G388800 chr1B 100.000 31 0 0 2388 2418 35064166 35064196 2.830000e-04 58.4
15 TraesCS3D01G388800 chr6B 88.508 905 90 7 2979 3873 690963611 690964511 0.000000e+00 1083.0
16 TraesCS3D01G388800 chr6B 83.183 886 104 10 4300 5142 690964992 690965875 0.000000e+00 769.0
17 TraesCS3D01G388800 chr6B 85.601 632 68 9 3952 4567 690964506 690965130 6.140000e-180 641.0
18 TraesCS3D01G388800 chr6B 84.088 685 76 17 2273 2937 690962943 690963614 1.330000e-176 630.0
19 TraesCS3D01G388800 chr6B 85.744 477 57 6 5475 5947 690966398 690966867 1.820000e-135 494.0
20 TraesCS3D01G388800 chr6B 76.026 1072 169 48 972 2018 690961589 690962597 6.590000e-130 475.0
21 TraesCS3D01G388800 chr6A 88.444 900 88 7 2979 3873 600695193 600696081 0.000000e+00 1072.0
22 TraesCS3D01G388800 chr6A 84.109 881 98 10 4300 5140 600696562 600697440 0.000000e+00 813.0
23 TraesCS3D01G388800 chr6A 86.028 637 66 9 3952 4572 600696076 600696705 0.000000e+00 662.0
24 TraesCS3D01G388800 chr6A 83.476 702 76 18 2255 2937 600694516 600695196 1.030000e-172 617.0
25 TraesCS3D01G388800 chr6A 85.325 477 60 5 5475 5947 600697951 600698421 1.090000e-132 484.0
26 TraesCS3D01G388800 chr6A 80.426 516 67 23 971 1466 600693346 600693847 5.350000e-96 363.0
27 TraesCS3D01G388800 chr6A 93.923 181 7 2 1 181 610649782 610649606 3.340000e-68 270.0
28 TraesCS3D01G388800 chr6A 94.531 128 6 1 6450 6576 381088855 381088728 5.740000e-46 196.0
29 TraesCS3D01G388800 chr6D 87.361 902 85 9 2979 3873 454487822 454488701 0.000000e+00 1007.0
30 TraesCS3D01G388800 chr6D 82.766 882 106 12 4300 5142 454489182 454490056 0.000000e+00 745.0
31 TraesCS3D01G388800 chr6D 86.185 637 65 9 3952 4572 454488696 454489325 0.000000e+00 667.0
32 TraesCS3D01G388800 chr6D 80.969 867 93 34 2091 2937 454487011 454487825 8.000000e-174 621.0
33 TraesCS3D01G388800 chr6D 85.744 477 58 5 5475 5947 454490579 454491049 5.060000e-136 496.0
34 TraesCS3D01G388800 chr6D 78.763 598 80 32 972 1553 454486290 454486856 2.490000e-94 357.0
35 TraesCS3D01G388800 chr6D 94.118 221 7 3 1 218 25651846 25652063 1.510000e-86 331.0
36 TraesCS3D01G388800 chr6D 81.098 328 44 9 5163 5477 454490049 454490371 5.620000e-61 246.0
37 TraesCS3D01G388800 chr7D 94.977 219 7 2 1 218 136187438 136187653 2.510000e-89 340.0
38 TraesCS3D01G388800 chr7D 82.449 245 27 13 1 238 18920580 18920345 4.440000e-47 200.0
39 TraesCS3D01G388800 chr7D 93.130 131 8 1 6447 6576 493569746 493569876 2.670000e-44 191.0
40 TraesCS3D01G388800 chr1D 94.091 220 9 4 1 219 418768800 418768584 1.510000e-86 331.0
41 TraesCS3D01G388800 chr1D 93.694 222 10 4 1 219 32383265 32383045 5.430000e-86 329.0
42 TraesCS3D01G388800 chr1D 93.182 132 8 1 6451 6581 194467446 194467315 7.430000e-45 193.0
43 TraesCS3D01G388800 chr5D 90.283 247 18 3 1 245 135058409 135058651 1.170000e-82 318.0
44 TraesCS3D01G388800 chr4D 89.015 264 14 7 1 253 317513028 317512769 5.470000e-81 313.0
45 TraesCS3D01G388800 chr2D 90.135 223 12 4 1 218 538925800 538926017 1.540000e-71 281.0
46 TraesCS3D01G388800 chr2D 93.182 132 9 0 6450 6581 380416677 380416546 2.070000e-45 195.0
47 TraesCS3D01G388800 chr2B 91.534 189 11 4 6 191 140780013 140780199 9.340000e-64 255.0
48 TraesCS3D01G388800 chr7A 91.146 192 8 5 1 187 90338297 90338484 1.210000e-62 252.0
49 TraesCS3D01G388800 chr7B 91.061 179 10 3 2 178 19274031 19274205 3.380000e-58 237.0
50 TraesCS3D01G388800 chr1A 91.429 140 10 2 6450 6588 357773039 357773177 2.670000e-44 191.0
51 TraesCS3D01G388800 chr1A 92.481 133 9 1 6450 6581 242003471 242003339 9.610000e-44 189.0
52 TraesCS3D01G388800 chr2A 92.424 132 10 0 6450 6581 515951791 515951660 9.610000e-44 189.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G388800 chr3D 504054009 504061265 7256 False 13402.000000 13402 100.000000 1 7257 1 chr3D.!!$F1 7256
1 TraesCS3D01G388800 chr3B 665464161 665470687 6526 False 2545.150000 9949 94.702250 672 7156 4 chr3B.!!$F2 6484
2 TraesCS3D01G388800 chr3A 642364927 642371517 6590 False 5119.000000 8769 92.932500 763 7249 2 chr3A.!!$F1 6486
3 TraesCS3D01G388800 chr5B 540405616 540406596 980 True 1439.000000 1439 93.299000 1445 2418 1 chr5B.!!$R1 973
4 TraesCS3D01G388800 chr1B 35063229 35064196 967 False 718.200000 1378 96.659500 1446 2418 2 chr1B.!!$F1 972
5 TraesCS3D01G388800 chr6B 690961589 690966867 5278 False 682.000000 1083 83.858333 972 5947 6 chr6B.!!$F1 4975
6 TraesCS3D01G388800 chr6A 600693346 600698421 5075 False 668.500000 1072 84.634667 971 5947 6 chr6A.!!$F1 4976
7 TraesCS3D01G388800 chr6D 454486290 454491049 4759 False 591.285714 1007 83.269429 972 5947 7 chr6D.!!$F2 4975

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
317 318 0.032952 TGTATACCAGATTCGCCGCC 59.967 55.000 0.00 0.0 0.00 6.13 F
318 319 0.032952 GTATACCAGATTCGCCGCCA 59.967 55.000 0.00 0.0 0.00 5.69 F
1129 1235 0.105964 TTGTCAACACCGTGAGAGGG 59.894 55.000 5.28 0.0 35.02 4.30 F
2226 2850 1.425066 TGTGCCTCAAGTCCTTCCAAT 59.575 47.619 0.00 0.0 0.00 3.16 F
3406 4218 0.467384 CGGTGGCTCCAGATTCTGAT 59.533 55.000 15.36 0.0 32.44 2.90 F
3538 4350 0.798776 GGAGTTCACCGCAACATGAG 59.201 55.000 0.00 0.0 0.00 2.90 F
3962 4780 2.297880 TCATTGATGGGCAATATGCTGC 59.702 45.455 2.00 0.0 45.23 5.25 F
5336 6361 1.480954 TCTAATCGGACTTGCCACTCC 59.519 52.381 0.00 0.0 35.94 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1129 1235 1.069935 GTCGGAATAGGCAGAGGGC 59.930 63.158 0.00 0.00 43.74 5.19 R
2210 2834 1.821136 GGCAATTGGAAGGACTTGAGG 59.179 52.381 7.72 0.00 0.00 3.86 R
3009 3818 0.108804 CAGCGTAGATGGTTCACGGT 60.109 55.000 0.00 0.00 46.18 4.83 R
3538 4350 2.487934 TGACTTGCTTTCTCACTGCTC 58.512 47.619 0.00 0.00 0.00 4.26 R
5315 6340 2.541556 GAGTGGCAAGTCCGATTAGAC 58.458 52.381 0.00 0.00 37.80 2.59 R
5336 6361 9.623000 TTCCTCTATATCAAATATCATGGCATG 57.377 33.333 21.42 21.42 0.00 4.06 R
5786 7026 6.873076 GGTGAAATTTAACATTGCATCCTGAA 59.127 34.615 7.99 0.00 0.00 3.02 R
7177 8462 1.081481 TCCAGGACCTCCACAGTAGA 58.919 55.000 0.00 0.00 38.89 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 8.680001 TCATCATGAAATCACATTTCTGTAAGG 58.320 33.333 0.00 0.00 46.71 2.69
28 29 6.855836 TCATGAAATCACATTTCTGTAAGGC 58.144 36.000 9.74 0.00 46.71 4.35
29 30 5.295431 TGAAATCACATTTCTGTAAGGCG 57.705 39.130 9.74 0.00 46.71 5.52
30 31 4.759693 TGAAATCACATTTCTGTAAGGCGT 59.240 37.500 9.74 0.00 46.71 5.68
31 32 4.685169 AATCACATTTCTGTAAGGCGTG 57.315 40.909 0.00 0.00 33.14 5.34
32 33 2.422597 TCACATTTCTGTAAGGCGTGG 58.577 47.619 0.00 0.00 33.14 4.94
33 34 1.135689 CACATTTCTGTAAGGCGTGGC 60.136 52.381 0.00 0.00 33.14 5.01
34 35 1.164411 CATTTCTGTAAGGCGTGGCA 58.836 50.000 0.00 0.00 0.00 4.92
35 36 1.539388 CATTTCTGTAAGGCGTGGCAA 59.461 47.619 0.00 0.00 0.00 4.52
36 37 1.681538 TTTCTGTAAGGCGTGGCAAA 58.318 45.000 0.00 0.00 0.00 3.68
37 38 1.681538 TTCTGTAAGGCGTGGCAAAA 58.318 45.000 0.00 0.00 0.00 2.44
38 39 1.681538 TCTGTAAGGCGTGGCAAAAA 58.318 45.000 0.00 0.00 0.00 1.94
65 66 8.898983 AAAAACAAATTCAGTGCTTCAAAATG 57.101 26.923 0.00 0.00 0.00 2.32
66 67 5.662211 ACAAATTCAGTGCTTCAAAATGC 57.338 34.783 0.00 0.00 0.00 3.56
67 68 4.209703 ACAAATTCAGTGCTTCAAAATGCG 59.790 37.500 0.00 0.00 0.00 4.73
68 69 3.648339 ATTCAGTGCTTCAAAATGCGT 57.352 38.095 0.00 0.00 0.00 5.24
69 70 3.435105 TTCAGTGCTTCAAAATGCGTT 57.565 38.095 0.00 0.00 0.00 4.84
70 71 3.435105 TCAGTGCTTCAAAATGCGTTT 57.565 38.095 0.00 0.00 0.00 3.60
71 72 3.114809 TCAGTGCTTCAAAATGCGTTTG 58.885 40.909 4.29 5.51 46.86 2.93
83 84 6.902224 AAAATGCGTTTGAAAGTAGCTTTT 57.098 29.167 4.29 0.00 36.97 2.27
84 85 6.902224 AAATGCGTTTGAAAGTAGCTTTTT 57.098 29.167 2.32 0.00 33.49 1.94
123 124 1.173043 TTTTTGCCACGCCATCTAGG 58.827 50.000 0.00 0.00 41.84 3.02
124 125 0.326595 TTTTGCCACGCCATCTAGGA 59.673 50.000 0.00 0.00 41.22 2.94
125 126 0.326595 TTTGCCACGCCATCTAGGAA 59.673 50.000 0.00 0.00 41.22 3.36
126 127 0.546122 TTGCCACGCCATCTAGGAAT 59.454 50.000 0.00 0.00 41.22 3.01
127 128 0.179048 TGCCACGCCATCTAGGAATG 60.179 55.000 0.00 0.00 41.22 2.67
128 129 0.179045 GCCACGCCATCTAGGAATGT 60.179 55.000 0.00 0.00 41.22 2.71
129 130 1.586422 CCACGCCATCTAGGAATGTG 58.414 55.000 0.00 0.00 41.22 3.21
130 131 1.138859 CCACGCCATCTAGGAATGTGA 59.861 52.381 0.00 0.00 41.22 3.58
131 132 2.224378 CCACGCCATCTAGGAATGTGAT 60.224 50.000 0.00 0.00 41.22 3.06
132 133 3.470709 CACGCCATCTAGGAATGTGATT 58.529 45.455 0.00 0.00 41.22 2.57
133 134 3.879295 CACGCCATCTAGGAATGTGATTT 59.121 43.478 0.00 0.00 41.22 2.17
134 135 4.024556 CACGCCATCTAGGAATGTGATTTC 60.025 45.833 0.00 0.00 41.22 2.17
135 136 4.129380 CGCCATCTAGGAATGTGATTTCA 58.871 43.478 0.00 0.00 41.22 2.69
136 137 4.758674 CGCCATCTAGGAATGTGATTTCAT 59.241 41.667 0.00 0.00 41.22 2.57
137 138 5.334646 CGCCATCTAGGAATGTGATTTCATG 60.335 44.000 0.00 0.00 41.22 3.07
138 139 5.766670 GCCATCTAGGAATGTGATTTCATGA 59.233 40.000 0.00 0.00 41.22 3.07
139 140 6.433404 GCCATCTAGGAATGTGATTTCATGAT 59.567 38.462 0.00 0.00 41.22 2.45
140 141 7.575155 GCCATCTAGGAATGTGATTTCATGATG 60.575 40.741 0.00 0.00 41.22 3.07
141 142 7.664318 CCATCTAGGAATGTGATTTCATGATGA 59.336 37.037 0.00 0.00 41.22 2.92
142 143 9.063615 CATCTAGGAATGTGATTTCATGATGAA 57.936 33.333 3.29 3.29 34.17 2.57
143 144 9.809395 ATCTAGGAATGTGATTTCATGATGAAT 57.191 29.630 8.90 0.00 36.11 2.57
144 145 9.636789 TCTAGGAATGTGATTTCATGATGAATT 57.363 29.630 8.90 5.47 36.11 2.17
147 148 9.953565 AGGAATGTGATTTCATGATGAATTTTT 57.046 25.926 8.90 0.00 36.11 1.94
148 149 9.982291 GGAATGTGATTTCATGATGAATTTTTG 57.018 29.630 8.90 0.00 36.11 2.44
149 150 9.485591 GAATGTGATTTCATGATGAATTTTTGC 57.514 29.630 8.90 0.00 36.11 3.68
150 151 7.964604 TGTGATTTCATGATGAATTTTTGCA 57.035 28.000 8.90 1.87 36.11 4.08
151 152 8.024146 TGTGATTTCATGATGAATTTTTGCAG 57.976 30.769 8.90 0.00 36.11 4.41
152 153 7.118535 TGTGATTTCATGATGAATTTTTGCAGG 59.881 33.333 8.90 0.00 36.11 4.85
153 154 5.866335 TTTCATGATGAATTTTTGCAGGC 57.134 34.783 8.90 0.00 36.11 4.85
154 155 4.538746 TCATGATGAATTTTTGCAGGCA 57.461 36.364 0.00 0.00 0.00 4.75
155 156 4.247258 TCATGATGAATTTTTGCAGGCAC 58.753 39.130 0.00 0.00 0.00 5.01
156 157 4.020928 TCATGATGAATTTTTGCAGGCACT 60.021 37.500 0.00 0.00 43.88 4.40
157 158 4.339872 TGATGAATTTTTGCAGGCACTT 57.660 36.364 0.00 0.00 34.60 3.16
158 159 5.465532 TGATGAATTTTTGCAGGCACTTA 57.534 34.783 0.00 0.00 34.60 2.24
159 160 5.472148 TGATGAATTTTTGCAGGCACTTAG 58.528 37.500 0.00 0.00 34.60 2.18
160 161 5.243507 TGATGAATTTTTGCAGGCACTTAGA 59.756 36.000 0.00 0.00 34.60 2.10
161 162 5.528043 TGAATTTTTGCAGGCACTTAGAA 57.472 34.783 0.00 0.00 34.60 2.10
162 163 6.100404 TGAATTTTTGCAGGCACTTAGAAT 57.900 33.333 0.00 0.00 34.60 2.40
163 164 6.523840 TGAATTTTTGCAGGCACTTAGAATT 58.476 32.000 0.00 0.00 34.60 2.17
164 165 6.991531 TGAATTTTTGCAGGCACTTAGAATTT 59.008 30.769 0.00 0.00 34.60 1.82
165 166 7.498570 TGAATTTTTGCAGGCACTTAGAATTTT 59.501 29.630 0.00 0.00 34.60 1.82
166 167 7.806409 ATTTTTGCAGGCACTTAGAATTTTT 57.194 28.000 0.00 0.00 34.60 1.94
167 168 6.601741 TTTTGCAGGCACTTAGAATTTTTG 57.398 33.333 0.00 0.00 34.60 2.44
168 169 4.935352 TGCAGGCACTTAGAATTTTTGT 57.065 36.364 0.00 0.00 34.60 2.83
169 170 4.870363 TGCAGGCACTTAGAATTTTTGTC 58.130 39.130 0.00 0.00 34.60 3.18
170 171 4.340666 TGCAGGCACTTAGAATTTTTGTCA 59.659 37.500 0.00 0.00 34.60 3.58
171 172 5.163468 TGCAGGCACTTAGAATTTTTGTCAA 60.163 36.000 0.00 0.00 34.60 3.18
172 173 5.928264 GCAGGCACTTAGAATTTTTGTCAAT 59.072 36.000 0.00 0.00 34.60 2.57
173 174 6.128742 GCAGGCACTTAGAATTTTTGTCAATG 60.129 38.462 0.00 0.00 34.60 2.82
174 175 6.925165 CAGGCACTTAGAATTTTTGTCAATGT 59.075 34.615 0.00 0.00 34.60 2.71
175 176 7.439056 CAGGCACTTAGAATTTTTGTCAATGTT 59.561 33.333 0.00 0.00 34.60 2.71
176 177 7.986889 AGGCACTTAGAATTTTTGTCAATGTTT 59.013 29.630 0.00 0.00 27.25 2.83
177 178 8.275632 GGCACTTAGAATTTTTGTCAATGTTTC 58.724 33.333 0.00 0.00 0.00 2.78
178 179 9.034544 GCACTTAGAATTTTTGTCAATGTTTCT 57.965 29.630 8.55 8.55 0.00 2.52
229 230 8.434870 TTCTTTTCGATTTTTAAATGAGCTCG 57.565 30.769 9.64 0.00 0.00 5.03
230 231 7.021196 TCTTTTCGATTTTTAAATGAGCTCGG 58.979 34.615 9.64 0.00 0.00 4.63
231 232 4.875544 TCGATTTTTAAATGAGCTCGGG 57.124 40.909 9.64 0.00 0.00 5.14
232 233 4.258543 TCGATTTTTAAATGAGCTCGGGT 58.741 39.130 9.64 0.00 0.00 5.28
233 234 4.094294 TCGATTTTTAAATGAGCTCGGGTG 59.906 41.667 9.64 0.00 0.00 4.61
234 235 3.569250 TTTTTAAATGAGCTCGGGTGC 57.431 42.857 9.64 0.00 0.00 5.01
235 236 2.192664 TTTAAATGAGCTCGGGTGCA 57.807 45.000 9.64 0.00 34.99 4.57
236 237 1.737838 TTAAATGAGCTCGGGTGCAG 58.262 50.000 9.64 0.00 34.99 4.41
237 238 0.901827 TAAATGAGCTCGGGTGCAGA 59.098 50.000 9.64 0.00 34.99 4.26
238 239 0.254178 AAATGAGCTCGGGTGCAGAT 59.746 50.000 9.64 0.00 34.99 2.90
239 240 0.254178 AATGAGCTCGGGTGCAGATT 59.746 50.000 9.64 0.00 34.99 2.40
240 241 1.123077 ATGAGCTCGGGTGCAGATTA 58.877 50.000 9.64 0.00 34.99 1.75
241 242 0.461548 TGAGCTCGGGTGCAGATTAG 59.538 55.000 9.64 0.00 34.99 1.73
242 243 0.878086 GAGCTCGGGTGCAGATTAGC 60.878 60.000 0.00 0.00 34.99 3.09
243 244 1.889573 GCTCGGGTGCAGATTAGCC 60.890 63.158 0.00 0.00 0.00 3.93
246 247 3.272334 GGGTGCAGATTAGCCGCG 61.272 66.667 0.00 0.00 0.00 6.46
247 248 2.511600 GGTGCAGATTAGCCGCGT 60.512 61.111 4.92 0.00 0.00 6.01
248 249 2.526120 GGTGCAGATTAGCCGCGTC 61.526 63.158 4.92 0.00 0.00 5.19
249 250 2.202878 TGCAGATTAGCCGCGTCC 60.203 61.111 4.92 0.00 0.00 4.79
250 251 2.967615 GCAGATTAGCCGCGTCCC 60.968 66.667 4.92 0.00 0.00 4.46
251 252 2.499205 CAGATTAGCCGCGTCCCA 59.501 61.111 4.92 0.00 0.00 4.37
252 253 1.153449 CAGATTAGCCGCGTCCCAA 60.153 57.895 4.92 0.00 0.00 4.12
253 254 1.144057 AGATTAGCCGCGTCCCAAG 59.856 57.895 4.92 0.00 0.00 3.61
254 255 2.513897 ATTAGCCGCGTCCCAAGC 60.514 61.111 4.92 0.00 0.00 4.01
255 256 3.323758 ATTAGCCGCGTCCCAAGCA 62.324 57.895 4.92 0.00 34.19 3.91
256 257 2.608970 ATTAGCCGCGTCCCAAGCAT 62.609 55.000 4.92 0.00 34.19 3.79
261 262 2.124736 GCGTCCCAAGCATGCCTA 60.125 61.111 15.66 0.00 34.19 3.93
262 263 2.472909 GCGTCCCAAGCATGCCTAC 61.473 63.158 15.66 4.80 34.19 3.18
263 264 1.221840 CGTCCCAAGCATGCCTACT 59.778 57.895 15.66 0.00 0.00 2.57
264 265 0.392998 CGTCCCAAGCATGCCTACTT 60.393 55.000 15.66 0.00 0.00 2.24
265 266 1.383523 GTCCCAAGCATGCCTACTTC 58.616 55.000 15.66 0.00 0.00 3.01
266 267 1.065126 GTCCCAAGCATGCCTACTTCT 60.065 52.381 15.66 0.00 0.00 2.85
267 268 1.635487 TCCCAAGCATGCCTACTTCTT 59.365 47.619 15.66 0.00 0.00 2.52
268 269 2.019984 CCCAAGCATGCCTACTTCTTC 58.980 52.381 15.66 0.00 0.00 2.87
269 270 2.019984 CCAAGCATGCCTACTTCTTCC 58.980 52.381 15.66 0.00 0.00 3.46
270 271 1.667724 CAAGCATGCCTACTTCTTCCG 59.332 52.381 15.66 0.00 0.00 4.30
271 272 0.905357 AGCATGCCTACTTCTTCCGT 59.095 50.000 15.66 0.00 0.00 4.69
272 273 1.009829 GCATGCCTACTTCTTCCGTG 58.990 55.000 6.36 0.00 0.00 4.94
273 274 1.676014 GCATGCCTACTTCTTCCGTGT 60.676 52.381 6.36 0.00 0.00 4.49
274 275 2.418197 GCATGCCTACTTCTTCCGTGTA 60.418 50.000 6.36 0.00 0.00 2.90
275 276 3.857052 CATGCCTACTTCTTCCGTGTAA 58.143 45.455 0.00 0.00 0.00 2.41
276 277 3.587797 TGCCTACTTCTTCCGTGTAAG 57.412 47.619 0.00 0.00 0.00 2.34
277 278 2.232941 TGCCTACTTCTTCCGTGTAAGG 59.767 50.000 0.00 0.00 0.00 2.69
278 279 2.233186 GCCTACTTCTTCCGTGTAAGGT 59.767 50.000 0.00 0.00 0.00 3.50
279 280 3.306571 GCCTACTTCTTCCGTGTAAGGTT 60.307 47.826 0.00 0.00 0.00 3.50
280 281 4.801914 GCCTACTTCTTCCGTGTAAGGTTT 60.802 45.833 0.00 0.00 0.00 3.27
281 282 5.303165 CCTACTTCTTCCGTGTAAGGTTTT 58.697 41.667 0.00 0.00 0.00 2.43
282 283 6.458210 CCTACTTCTTCCGTGTAAGGTTTTA 58.542 40.000 0.00 0.00 0.00 1.52
283 284 6.589139 CCTACTTCTTCCGTGTAAGGTTTTAG 59.411 42.308 0.00 0.00 0.00 1.85
284 285 5.922053 ACTTCTTCCGTGTAAGGTTTTAGT 58.078 37.500 0.00 0.00 0.00 2.24
285 286 6.351711 ACTTCTTCCGTGTAAGGTTTTAGTT 58.648 36.000 0.00 0.00 0.00 2.24
286 287 6.259387 ACTTCTTCCGTGTAAGGTTTTAGTTG 59.741 38.462 0.00 0.00 0.00 3.16
287 288 4.512571 TCTTCCGTGTAAGGTTTTAGTTGC 59.487 41.667 0.00 0.00 0.00 4.17
288 289 3.806380 TCCGTGTAAGGTTTTAGTTGCA 58.194 40.909 0.00 0.00 0.00 4.08
289 290 4.391155 TCCGTGTAAGGTTTTAGTTGCAT 58.609 39.130 0.00 0.00 0.00 3.96
290 291 4.453136 TCCGTGTAAGGTTTTAGTTGCATC 59.547 41.667 0.00 0.00 0.00 3.91
291 292 4.379082 CCGTGTAAGGTTTTAGTTGCATCC 60.379 45.833 0.00 0.00 0.00 3.51
292 293 4.214545 CGTGTAAGGTTTTAGTTGCATCCA 59.785 41.667 0.00 0.00 0.00 3.41
293 294 5.278071 CGTGTAAGGTTTTAGTTGCATCCAA 60.278 40.000 0.00 0.00 0.00 3.53
294 295 6.569610 CGTGTAAGGTTTTAGTTGCATCCAAT 60.570 38.462 0.00 0.00 32.75 3.16
295 296 7.361371 CGTGTAAGGTTTTAGTTGCATCCAATA 60.361 37.037 0.00 0.00 32.75 1.90
296 297 8.301002 GTGTAAGGTTTTAGTTGCATCCAATAA 58.699 33.333 0.00 0.00 32.75 1.40
297 298 8.301002 TGTAAGGTTTTAGTTGCATCCAATAAC 58.699 33.333 0.00 0.00 32.75 1.89
298 299 7.539034 AAGGTTTTAGTTGCATCCAATAACT 57.461 32.000 0.00 0.00 38.19 2.24
299 300 6.924111 AGGTTTTAGTTGCATCCAATAACTG 58.076 36.000 0.00 0.00 36.22 3.16
300 301 6.493458 AGGTTTTAGTTGCATCCAATAACTGT 59.507 34.615 0.00 0.00 36.22 3.55
301 302 7.668052 AGGTTTTAGTTGCATCCAATAACTGTA 59.332 33.333 0.00 0.00 36.22 2.74
302 303 8.466798 GGTTTTAGTTGCATCCAATAACTGTAT 58.533 33.333 0.00 0.00 36.22 2.29
305 306 8.671384 TTAGTTGCATCCAATAACTGTATACC 57.329 34.615 0.00 0.00 36.22 2.73
306 307 6.658849 AGTTGCATCCAATAACTGTATACCA 58.341 36.000 0.00 0.00 33.69 3.25
307 308 6.767902 AGTTGCATCCAATAACTGTATACCAG 59.232 38.462 0.00 0.91 39.06 4.00
308 309 6.493189 TGCATCCAATAACTGTATACCAGA 57.507 37.500 0.00 0.00 44.49 3.86
309 310 7.078249 TGCATCCAATAACTGTATACCAGAT 57.922 36.000 0.00 0.00 44.49 2.90
310 311 7.517320 TGCATCCAATAACTGTATACCAGATT 58.483 34.615 0.00 0.00 44.49 2.40
311 312 7.661437 TGCATCCAATAACTGTATACCAGATTC 59.339 37.037 0.00 0.00 44.49 2.52
312 313 7.148573 GCATCCAATAACTGTATACCAGATTCG 60.149 40.741 0.00 0.00 44.49 3.34
313 314 6.220930 TCCAATAACTGTATACCAGATTCGC 58.779 40.000 0.00 0.00 44.49 4.70
314 315 5.408604 CCAATAACTGTATACCAGATTCGCC 59.591 44.000 0.00 0.00 44.49 5.54
315 316 2.795175 ACTGTATACCAGATTCGCCG 57.205 50.000 0.00 0.00 44.49 6.46
316 317 1.269621 ACTGTATACCAGATTCGCCGC 60.270 52.381 0.00 0.00 44.49 6.53
317 318 0.032952 TGTATACCAGATTCGCCGCC 59.967 55.000 0.00 0.00 0.00 6.13
318 319 0.032952 GTATACCAGATTCGCCGCCA 59.967 55.000 0.00 0.00 0.00 5.69
319 320 0.753867 TATACCAGATTCGCCGCCAA 59.246 50.000 0.00 0.00 0.00 4.52
320 321 0.532862 ATACCAGATTCGCCGCCAAG 60.533 55.000 0.00 0.00 0.00 3.61
321 322 2.587322 TACCAGATTCGCCGCCAAGG 62.587 60.000 0.00 0.00 44.97 3.61
322 323 2.436646 CAGATTCGCCGCCAAGGT 60.437 61.111 0.00 0.00 43.70 3.50
323 324 2.040544 CAGATTCGCCGCCAAGGTT 61.041 57.895 0.00 0.00 43.70 3.50
324 325 1.303317 AGATTCGCCGCCAAGGTTT 60.303 52.632 0.00 0.00 43.70 3.27
325 326 1.136774 GATTCGCCGCCAAGGTTTC 59.863 57.895 0.00 0.00 43.70 2.78
326 327 2.266376 GATTCGCCGCCAAGGTTTCC 62.266 60.000 0.00 0.00 43.70 3.13
327 328 3.776347 TTCGCCGCCAAGGTTTCCA 62.776 57.895 0.00 0.00 43.70 3.53
328 329 3.061848 CGCCGCCAAGGTTTCCAT 61.062 61.111 0.00 0.00 43.70 3.41
329 330 2.885113 GCCGCCAAGGTTTCCATC 59.115 61.111 0.00 0.00 43.70 3.51
330 331 1.976474 GCCGCCAAGGTTTCCATCA 60.976 57.895 0.00 0.00 43.70 3.07
331 332 1.322538 GCCGCCAAGGTTTCCATCAT 61.323 55.000 0.00 0.00 43.70 2.45
332 333 0.457035 CCGCCAAGGTTTCCATCATG 59.543 55.000 0.00 0.00 34.51 3.07
333 334 0.457035 CGCCAAGGTTTCCATCATGG 59.543 55.000 0.00 0.00 39.43 3.66
334 335 0.176449 GCCAAGGTTTCCATCATGGC 59.824 55.000 0.00 0.00 45.54 4.40
335 336 0.457035 CCAAGGTTTCCATCATGGCG 59.543 55.000 0.00 0.00 37.47 5.69
336 337 0.179129 CAAGGTTTCCATCATGGCGC 60.179 55.000 0.00 0.00 37.47 6.53
337 338 0.323725 AAGGTTTCCATCATGGCGCT 60.324 50.000 7.64 0.00 37.47 5.92
338 339 0.546122 AGGTTTCCATCATGGCGCTA 59.454 50.000 7.64 0.00 37.47 4.26
339 340 0.663153 GGTTTCCATCATGGCGCTAC 59.337 55.000 7.64 0.00 37.47 3.58
340 341 0.304705 GTTTCCATCATGGCGCTACG 59.695 55.000 7.64 0.00 37.47 3.51
341 342 0.813610 TTTCCATCATGGCGCTACGG 60.814 55.000 7.64 0.07 37.47 4.02
342 343 1.681486 TTCCATCATGGCGCTACGGA 61.681 55.000 7.64 2.90 37.47 4.69
343 344 1.004560 CCATCATGGCGCTACGGAT 60.005 57.895 7.64 5.57 0.00 4.18
344 345 1.016130 CCATCATGGCGCTACGGATC 61.016 60.000 7.64 0.00 0.00 3.36
345 346 1.080501 ATCATGGCGCTACGGATCG 60.081 57.895 7.64 0.00 0.00 3.69
346 347 1.806461 ATCATGGCGCTACGGATCGT 61.806 55.000 7.64 0.00 44.35 3.73
347 348 2.027605 ATGGCGCTACGGATCGTG 59.972 61.111 7.64 0.00 41.39 4.35
348 349 3.499929 ATGGCGCTACGGATCGTGG 62.500 63.158 7.64 1.22 41.39 4.94
360 361 3.271014 TCGTGGCACGACTCTACC 58.729 61.111 36.29 0.00 46.73 3.18
361 362 1.601477 TCGTGGCACGACTCTACCA 60.601 57.895 36.29 14.10 46.73 3.25
362 363 1.443872 CGTGGCACGACTCTACCAC 60.444 63.158 34.85 0.00 46.05 4.16
363 364 1.080025 GTGGCACGACTCTACCACC 60.080 63.158 0.00 0.00 45.56 4.61
364 365 1.532078 TGGCACGACTCTACCACCA 60.532 57.895 0.00 0.00 0.00 4.17
365 366 1.116536 TGGCACGACTCTACCACCAA 61.117 55.000 0.00 0.00 0.00 3.67
366 367 0.389948 GGCACGACTCTACCACCAAG 60.390 60.000 0.00 0.00 0.00 3.61
367 368 0.317479 GCACGACTCTACCACCAAGT 59.683 55.000 0.00 0.00 0.00 3.16
368 369 1.270147 GCACGACTCTACCACCAAGTT 60.270 52.381 0.00 0.00 0.00 2.66
369 370 2.029649 GCACGACTCTACCACCAAGTTA 60.030 50.000 0.00 0.00 0.00 2.24
370 371 3.553508 GCACGACTCTACCACCAAGTTAA 60.554 47.826 0.00 0.00 0.00 2.01
371 372 4.817517 CACGACTCTACCACCAAGTTAAT 58.182 43.478 0.00 0.00 0.00 1.40
372 373 5.235516 CACGACTCTACCACCAAGTTAATT 58.764 41.667 0.00 0.00 0.00 1.40
373 374 6.392354 CACGACTCTACCACCAAGTTAATTA 58.608 40.000 0.00 0.00 0.00 1.40
374 375 6.530534 CACGACTCTACCACCAAGTTAATTAG 59.469 42.308 0.00 0.00 0.00 1.73
375 376 6.435277 ACGACTCTACCACCAAGTTAATTAGA 59.565 38.462 0.00 0.00 0.00 2.10
376 377 7.039504 ACGACTCTACCACCAAGTTAATTAGAA 60.040 37.037 0.00 0.00 0.00 2.10
377 378 7.275123 CGACTCTACCACCAAGTTAATTAGAAC 59.725 40.741 0.00 0.00 0.00 3.01
378 379 7.095270 ACTCTACCACCAAGTTAATTAGAACG 58.905 38.462 0.00 0.00 34.36 3.95
379 380 7.039504 ACTCTACCACCAAGTTAATTAGAACGA 60.040 37.037 0.00 0.00 34.36 3.85
380 381 7.844009 TCTACCACCAAGTTAATTAGAACGAT 58.156 34.615 0.00 0.00 34.36 3.73
381 382 6.980051 ACCACCAAGTTAATTAGAACGATC 57.020 37.500 0.00 0.00 34.36 3.69
382 383 5.579511 ACCACCAAGTTAATTAGAACGATCG 59.420 40.000 14.88 14.88 34.36 3.69
383 384 5.490213 CACCAAGTTAATTAGAACGATCGC 58.510 41.667 16.60 0.00 34.36 4.58
384 385 5.062934 CACCAAGTTAATTAGAACGATCGCA 59.937 40.000 16.60 0.00 34.36 5.10
385 386 5.640357 ACCAAGTTAATTAGAACGATCGCAA 59.360 36.000 16.60 4.75 34.36 4.85
386 387 6.148150 ACCAAGTTAATTAGAACGATCGCAAA 59.852 34.615 16.60 4.75 34.36 3.68
387 388 7.018826 CCAAGTTAATTAGAACGATCGCAAAA 58.981 34.615 16.60 5.13 34.36 2.44
388 389 7.696453 CCAAGTTAATTAGAACGATCGCAAAAT 59.304 33.333 16.60 7.35 34.36 1.82
389 390 9.061610 CAAGTTAATTAGAACGATCGCAAAATT 57.938 29.630 16.60 16.88 34.36 1.82
390 391 8.822105 AGTTAATTAGAACGATCGCAAAATTC 57.178 30.769 16.60 11.05 34.36 2.17
391 392 7.634817 AGTTAATTAGAACGATCGCAAAATTCG 59.365 33.333 16.60 0.00 38.76 3.34
392 393 2.159467 AGAACGATCGCAAAATTCGC 57.841 45.000 16.60 0.00 36.37 4.70
393 394 1.463056 AGAACGATCGCAAAATTCGCA 59.537 42.857 16.60 0.00 36.37 5.10
394 395 2.095969 AGAACGATCGCAAAATTCGCAA 60.096 40.909 16.60 0.00 36.37 4.85
395 396 2.323939 ACGATCGCAAAATTCGCAAA 57.676 40.000 16.60 0.00 36.37 3.68
396 397 2.241722 ACGATCGCAAAATTCGCAAAG 58.758 42.857 16.60 0.00 36.37 2.77
397 398 1.008137 CGATCGCAAAATTCGCAAAGC 60.008 47.619 0.26 0.00 0.00 3.51
398 399 2.253603 GATCGCAAAATTCGCAAAGCT 58.746 42.857 1.28 0.00 0.00 3.74
399 400 2.979401 TCGCAAAATTCGCAAAGCTA 57.021 40.000 0.00 0.00 0.00 3.32
400 401 2.580589 TCGCAAAATTCGCAAAGCTAC 58.419 42.857 0.00 0.00 0.00 3.58
401 402 2.225491 TCGCAAAATTCGCAAAGCTACT 59.775 40.909 0.00 0.00 0.00 2.57
402 403 2.339400 CGCAAAATTCGCAAAGCTACTG 59.661 45.455 0.00 0.00 0.00 2.74
403 404 2.091122 GCAAAATTCGCAAAGCTACTGC 59.909 45.455 10.07 10.07 40.05 4.40
404 405 2.636768 AAATTCGCAAAGCTACTGCC 57.363 45.000 13.54 0.00 40.80 4.85
405 406 1.826385 AATTCGCAAAGCTACTGCCT 58.174 45.000 13.54 0.00 40.80 4.75
406 407 2.691409 ATTCGCAAAGCTACTGCCTA 57.309 45.000 13.54 4.15 40.80 3.93
407 408 2.465860 TTCGCAAAGCTACTGCCTAA 57.534 45.000 13.54 6.98 40.80 2.69
408 409 2.465860 TCGCAAAGCTACTGCCTAAA 57.534 45.000 13.54 0.00 40.80 1.85
409 410 2.985896 TCGCAAAGCTACTGCCTAAAT 58.014 42.857 13.54 0.00 40.80 1.40
410 411 3.343617 TCGCAAAGCTACTGCCTAAATT 58.656 40.909 13.54 0.00 40.80 1.82
411 412 3.756434 TCGCAAAGCTACTGCCTAAATTT 59.244 39.130 13.54 0.00 40.80 1.82
412 413 3.853671 CGCAAAGCTACTGCCTAAATTTG 59.146 43.478 13.54 0.00 40.80 2.32
413 414 4.379394 CGCAAAGCTACTGCCTAAATTTGA 60.379 41.667 13.54 0.00 40.80 2.69
414 415 5.654497 GCAAAGCTACTGCCTAAATTTGAT 58.346 37.500 9.12 0.00 40.80 2.57
415 416 5.745769 GCAAAGCTACTGCCTAAATTTGATC 59.254 40.000 9.12 0.00 40.80 2.92
416 417 5.741388 AAGCTACTGCCTAAATTTGATCG 57.259 39.130 0.00 0.00 40.80 3.69
417 418 5.023533 AGCTACTGCCTAAATTTGATCGA 57.976 39.130 0.00 0.00 40.80 3.59
418 419 4.811557 AGCTACTGCCTAAATTTGATCGAC 59.188 41.667 0.00 0.00 40.80 4.20
419 420 4.811557 GCTACTGCCTAAATTTGATCGACT 59.188 41.667 0.00 0.00 0.00 4.18
420 421 5.277058 GCTACTGCCTAAATTTGATCGACTG 60.277 44.000 0.00 0.00 0.00 3.51
421 422 3.941483 ACTGCCTAAATTTGATCGACTGG 59.059 43.478 0.00 0.00 0.00 4.00
422 423 3.941483 CTGCCTAAATTTGATCGACTGGT 59.059 43.478 0.00 0.00 0.00 4.00
423 424 5.092554 TGCCTAAATTTGATCGACTGGTA 57.907 39.130 0.00 0.00 0.00 3.25
424 425 5.492895 TGCCTAAATTTGATCGACTGGTAA 58.507 37.500 0.00 0.00 0.00 2.85
425 426 5.353123 TGCCTAAATTTGATCGACTGGTAAC 59.647 40.000 0.00 0.00 0.00 2.50
444 445 8.677148 TGGTAACAGCCTAGAATGAATTAATC 57.323 34.615 0.00 0.00 46.17 1.75
445 446 8.271458 TGGTAACAGCCTAGAATGAATTAATCA 58.729 33.333 0.00 0.00 46.17 2.57
495 496 6.546428 TCTCAATTAGGAGAAATCGGAAGT 57.454 37.500 0.00 0.00 40.81 3.01
496 497 7.655521 TCTCAATTAGGAGAAATCGGAAGTA 57.344 36.000 0.00 0.00 40.81 2.24
497 498 8.251383 TCTCAATTAGGAGAAATCGGAAGTAT 57.749 34.615 0.00 0.00 40.81 2.12
498 499 8.144478 TCTCAATTAGGAGAAATCGGAAGTATG 58.856 37.037 0.00 0.00 40.81 2.39
499 500 7.792032 TCAATTAGGAGAAATCGGAAGTATGT 58.208 34.615 0.00 0.00 0.00 2.29
500 501 8.920174 TCAATTAGGAGAAATCGGAAGTATGTA 58.080 33.333 0.00 0.00 0.00 2.29
501 502 9.197694 CAATTAGGAGAAATCGGAAGTATGTAG 57.802 37.037 0.00 0.00 0.00 2.74
502 503 7.893124 TTAGGAGAAATCGGAAGTATGTAGT 57.107 36.000 0.00 0.00 0.00 2.73
503 504 8.985315 TTAGGAGAAATCGGAAGTATGTAGTA 57.015 34.615 0.00 0.00 0.00 1.82
504 505 7.274603 AGGAGAAATCGGAAGTATGTAGTAC 57.725 40.000 0.00 0.00 0.00 2.73
505 506 7.061688 AGGAGAAATCGGAAGTATGTAGTACT 58.938 38.462 0.00 0.00 45.56 2.73
506 507 8.216423 AGGAGAAATCGGAAGTATGTAGTACTA 58.784 37.037 0.00 0.00 42.83 1.82
507 508 8.288913 GGAGAAATCGGAAGTATGTAGTACTAC 58.711 40.741 23.58 23.58 42.83 2.73
508 509 8.977267 AGAAATCGGAAGTATGTAGTACTACT 57.023 34.615 28.56 18.27 42.83 2.57
512 513 9.709495 AATCGGAAGTATGTAGTACTACTAGAG 57.291 37.037 28.56 14.31 42.83 2.43
513 514 8.470657 TCGGAAGTATGTAGTACTACTAGAGA 57.529 38.462 28.56 12.50 42.83 3.10
514 515 8.918116 TCGGAAGTATGTAGTACTACTAGAGAA 58.082 37.037 28.56 11.85 42.83 2.87
515 516 9.539825 CGGAAGTATGTAGTACTACTAGAGAAA 57.460 37.037 28.56 11.19 42.83 2.52
526 527 9.664332 AGTACTACTAGAGAAAAGATTACGACA 57.336 33.333 0.00 0.00 0.00 4.35
527 528 9.919348 GTACTACTAGAGAAAAGATTACGACAG 57.081 37.037 0.00 0.00 0.00 3.51
528 529 8.564509 ACTACTAGAGAAAAGATTACGACAGT 57.435 34.615 0.00 0.00 0.00 3.55
529 530 9.664332 ACTACTAGAGAAAAGATTACGACAGTA 57.336 33.333 0.00 0.00 0.00 2.74
535 536 9.543783 AGAGAAAAGATTACGACAGTAAAAGTT 57.456 29.630 0.00 0.00 44.92 2.66
537 538 9.931210 AGAAAAGATTACGACAGTAAAAGTTTG 57.069 29.630 0.00 0.00 44.92 2.93
538 539 9.166126 GAAAAGATTACGACAGTAAAAGTTTGG 57.834 33.333 0.00 0.00 44.92 3.28
539 540 8.441312 AAAGATTACGACAGTAAAAGTTTGGA 57.559 30.769 0.00 0.00 44.92 3.53
540 541 8.441312 AAGATTACGACAGTAAAAGTTTGGAA 57.559 30.769 0.00 0.00 44.92 3.53
541 542 7.858583 AGATTACGACAGTAAAAGTTTGGAAC 58.141 34.615 0.00 0.00 44.92 3.62
542 543 6.981762 TTACGACAGTAAAAGTTTGGAACA 57.018 33.333 0.00 0.00 39.64 3.18
543 544 5.225899 ACGACAGTAAAAGTTTGGAACAC 57.774 39.130 0.00 0.00 39.29 3.32
544 545 4.201744 ACGACAGTAAAAGTTTGGAACACG 60.202 41.667 0.00 0.00 39.29 4.49
545 546 4.023739 ACAGTAAAAGTTTGGAACACGC 57.976 40.909 0.00 0.00 39.29 5.34
546 547 3.440872 ACAGTAAAAGTTTGGAACACGCA 59.559 39.130 0.00 0.00 39.29 5.24
547 548 3.789224 CAGTAAAAGTTTGGAACACGCAC 59.211 43.478 0.00 0.00 39.29 5.34
548 549 3.692593 AGTAAAAGTTTGGAACACGCACT 59.307 39.130 0.00 0.00 39.29 4.40
549 550 2.559998 AAAGTTTGGAACACGCACTG 57.440 45.000 0.00 0.00 39.29 3.66
550 551 1.459450 AAGTTTGGAACACGCACTGT 58.541 45.000 0.00 0.00 39.29 3.55
558 559 2.280389 CACGCACTGTGCCTCTGT 60.280 61.111 25.61 15.21 42.70 3.41
559 560 1.889105 CACGCACTGTGCCTCTGTT 60.889 57.895 25.61 1.93 42.70 3.16
560 561 1.889105 ACGCACTGTGCCTCTGTTG 60.889 57.895 25.61 12.82 41.12 3.33
561 562 2.641559 GCACTGTGCCTCTGTTGC 59.358 61.111 21.78 0.00 37.42 4.17
562 563 1.895707 GCACTGTGCCTCTGTTGCT 60.896 57.895 21.78 0.00 37.42 3.91
563 564 1.947013 CACTGTGCCTCTGTTGCTG 59.053 57.895 0.00 0.00 0.00 4.41
564 565 0.816825 CACTGTGCCTCTGTTGCTGT 60.817 55.000 0.00 0.00 0.00 4.40
565 566 0.816825 ACTGTGCCTCTGTTGCTGTG 60.817 55.000 0.00 0.00 0.00 3.66
566 567 0.533531 CTGTGCCTCTGTTGCTGTGA 60.534 55.000 0.00 0.00 0.00 3.58
567 568 0.533531 TGTGCCTCTGTTGCTGTGAG 60.534 55.000 0.00 0.00 0.00 3.51
568 569 0.533755 GTGCCTCTGTTGCTGTGAGT 60.534 55.000 0.00 0.00 0.00 3.41
569 570 0.533531 TGCCTCTGTTGCTGTGAGTG 60.534 55.000 0.00 0.00 0.00 3.51
570 571 1.849976 GCCTCTGTTGCTGTGAGTGC 61.850 60.000 0.00 0.00 0.00 4.40
571 572 1.233285 CCTCTGTTGCTGTGAGTGCC 61.233 60.000 0.00 0.00 0.00 5.01
572 573 1.563435 CTCTGTTGCTGTGAGTGCCG 61.563 60.000 0.00 0.00 0.00 5.69
573 574 2.591429 TGTTGCTGTGAGTGCCGG 60.591 61.111 0.00 0.00 0.00 6.13
574 575 4.030452 GTTGCTGTGAGTGCCGGC 62.030 66.667 22.73 22.73 34.71 6.13
578 579 2.360350 CTGTGAGTGCCGGCCAAT 60.360 61.111 26.77 11.63 0.00 3.16
579 580 2.359850 TGTGAGTGCCGGCCAATC 60.360 61.111 26.77 20.27 38.94 2.67
580 581 3.499737 GTGAGTGCCGGCCAATCG 61.500 66.667 26.77 0.00 41.27 3.34
641 642 4.314440 GTGCCTGCCTGACGACCA 62.314 66.667 0.00 0.00 0.00 4.02
642 643 4.007644 TGCCTGCCTGACGACCAG 62.008 66.667 0.00 0.00 42.55 4.00
649 650 2.878429 CTGACGACCAGGACGAGG 59.122 66.667 18.62 3.78 39.23 4.63
650 651 3.343788 CTGACGACCAGGACGAGGC 62.344 68.421 18.62 7.37 39.23 4.70
651 652 4.477975 GACGACCAGGACGAGGCG 62.478 72.222 18.62 2.14 34.70 5.52
653 654 4.180946 CGACCAGGACGAGGCGAG 62.181 72.222 5.25 0.00 0.00 5.03
654 655 4.500116 GACCAGGACGAGGCGAGC 62.500 72.222 0.00 0.00 0.00 5.03
666 667 3.918220 GCGAGCGCCGATGTGAAG 61.918 66.667 20.06 0.00 41.76 3.02
667 668 2.202610 CGAGCGCCGATGTGAAGA 60.203 61.111 2.29 0.00 41.76 2.87
668 669 2.226896 CGAGCGCCGATGTGAAGAG 61.227 63.158 2.29 0.00 41.76 2.85
669 670 1.880340 GAGCGCCGATGTGAAGAGG 60.880 63.158 2.29 0.00 0.00 3.69
670 671 2.184322 GCGCCGATGTGAAGAGGA 59.816 61.111 0.00 0.00 0.00 3.71
706 707 2.106332 GCGGCTATACGGCAGTGT 59.894 61.111 0.00 0.00 43.73 3.55
707 708 1.361271 GCGGCTATACGGCAGTGTA 59.639 57.895 0.00 0.00 43.73 2.90
708 709 0.938168 GCGGCTATACGGCAGTGTAC 60.938 60.000 0.00 0.00 43.73 2.90
723 724 1.755380 GTGTACCAGATCGCTAACCCT 59.245 52.381 0.00 0.00 0.00 4.34
728 729 4.563140 ACCAGATCGCTAACCCTTTTTA 57.437 40.909 0.00 0.00 0.00 1.52
731 732 5.949952 ACCAGATCGCTAACCCTTTTTATTT 59.050 36.000 0.00 0.00 0.00 1.40
732 733 6.436218 ACCAGATCGCTAACCCTTTTTATTTT 59.564 34.615 0.00 0.00 0.00 1.82
733 734 7.612633 ACCAGATCGCTAACCCTTTTTATTTTA 59.387 33.333 0.00 0.00 0.00 1.52
734 735 8.630037 CCAGATCGCTAACCCTTTTTATTTTAT 58.370 33.333 0.00 0.00 0.00 1.40
822 897 4.625800 GCTGTAGCCAGAACCCTG 57.374 61.111 0.00 0.00 41.50 4.45
862 938 1.048724 CCTGGGGGAATCTCACGCTA 61.049 60.000 0.00 0.00 33.42 4.26
870 946 2.298158 AATCTCACGCTACTGGGCCG 62.298 60.000 0.00 0.00 0.00 6.13
946 1041 1.999735 CGCTCGGTTTGATCTGCTAAA 59.000 47.619 0.00 0.00 0.00 1.85
962 1057 5.536161 TCTGCTAAAGAAGTGGAGCATTTTT 59.464 36.000 0.00 0.00 43.61 1.94
1021 1121 3.801997 CTCTCAATGCCGCCCCCT 61.802 66.667 0.00 0.00 0.00 4.79
1116 1222 6.778821 TCTTCCTCATCAAAGGTATTGTCAA 58.221 36.000 0.00 0.00 37.69 3.18
1129 1235 0.105964 TTGTCAACACCGTGAGAGGG 59.894 55.000 5.28 0.00 35.02 4.30
1679 2167 9.341899 CCTTCCTTAAAGAATGAAAAACATACG 57.658 33.333 0.00 0.00 37.12 3.06
1692 2180 3.848272 AACATACGCATTCAAGGTTGG 57.152 42.857 0.00 0.00 0.00 3.77
1850 2343 9.950496 AGAGTTATGTTTTCACTGATTCATAGT 57.050 29.630 0.00 0.00 0.00 2.12
1865 2358 8.267620 TGATTCATAGTGTGATTGTGTTTAGG 57.732 34.615 0.00 0.00 36.54 2.69
2064 2686 8.840321 CCTTTAATATGTTATGTTCTCTGTGGG 58.160 37.037 0.00 0.00 0.00 4.61
2226 2850 1.425066 TGTGCCTCAAGTCCTTCCAAT 59.575 47.619 0.00 0.00 0.00 3.16
2253 2877 1.751437 GCCCAACAGACATTACCTCC 58.249 55.000 0.00 0.00 0.00 4.30
2549 3352 7.035612 AGTGTCCAGATGTTTTTGAGTTTTTC 58.964 34.615 0.00 0.00 0.00 2.29
2580 3383 5.756195 TGAATGTAATATCTGCAGGTTGC 57.244 39.130 15.13 10.64 45.29 4.17
2582 3385 5.887598 TGAATGTAATATCTGCAGGTTGCTT 59.112 36.000 15.13 4.19 45.31 3.91
2699 3502 6.738114 TCTTTTGAGCTGGTATGTCAAAAAG 58.262 36.000 9.90 4.13 45.07 2.27
3009 3818 0.916086 ATGGTGCCAACTCCCGATTA 59.084 50.000 0.00 0.00 0.00 1.75
3156 3968 1.202330 ACTGAGCCTGCTTCAGCTAT 58.798 50.000 14.42 0.00 42.66 2.97
3406 4218 0.467384 CGGTGGCTCCAGATTCTGAT 59.533 55.000 15.36 0.00 32.44 2.90
3538 4350 0.798776 GGAGTTCACCGCAACATGAG 59.201 55.000 0.00 0.00 0.00 2.90
3813 4628 2.569059 AGCACTACATGATGATGGCAC 58.431 47.619 0.00 0.00 33.39 5.01
3960 4778 5.823312 TCTATCATTGATGGGCAATATGCT 58.177 37.500 9.46 0.00 45.23 3.79
3962 4780 2.297880 TCATTGATGGGCAATATGCTGC 59.702 45.455 2.00 0.00 45.23 5.25
4714 5703 6.808829 TGAAGATGGTAATGGCAATTCATTC 58.191 36.000 0.00 0.00 38.24 2.67
5073 6071 5.785423 TCCCCGATCATATTCTTTGGAGTAT 59.215 40.000 0.00 0.00 0.00 2.12
5336 6361 1.480954 TCTAATCGGACTTGCCACTCC 59.519 52.381 0.00 0.00 35.94 3.85
5340 6365 2.401766 CGGACTTGCCACTCCATGC 61.402 63.158 0.00 0.00 35.94 4.06
5370 6395 9.935241 GATATTTGATATAGAGGAAAGTCAGCA 57.065 33.333 0.00 0.00 0.00 4.41
5720 6960 5.481105 TGCCATCTTTTGCTAAATTTCCTG 58.519 37.500 0.00 0.00 0.00 3.86
5786 7026 4.508551 TCACACCATTGGCTATTCTGAT 57.491 40.909 1.54 0.00 0.00 2.90
5805 7045 7.649533 TCTGATTCAGGATGCAATGTTAAAT 57.350 32.000 13.59 0.00 34.76 1.40
6012 7252 1.277739 CTATCGTGCCATGCTTGCG 59.722 57.895 0.00 0.00 0.00 4.85
6572 7813 2.345560 AGCCTACCCTACTTGTTTGGT 58.654 47.619 0.00 0.00 34.85 3.67
6673 7926 2.684943 TCGGCATCCCTAATCCACTTA 58.315 47.619 0.00 0.00 0.00 2.24
7073 8326 3.019003 GCGAGCTCAAGGCCACCTA 62.019 63.158 15.40 0.00 43.05 3.08
7177 8462 1.286248 AAGGATTACCGGTCCAGCTT 58.714 50.000 12.40 0.00 41.83 3.74
7249 8534 9.851686 ATGTTTATTTGGCTGATAGATGTAAGA 57.148 29.630 0.00 0.00 0.00 2.10
7250 8535 9.679661 TGTTTATTTGGCTGATAGATGTAAGAA 57.320 29.630 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 5.088739 CACGCCTTACAGAAATGTGATTTC 58.911 41.667 0.00 0.00 46.90 2.17
9 10 4.082787 CCACGCCTTACAGAAATGTGATTT 60.083 41.667 0.00 0.00 34.64 2.17
10 11 3.440173 CCACGCCTTACAGAAATGTGATT 59.560 43.478 0.00 0.00 0.00 2.57
11 12 3.009723 CCACGCCTTACAGAAATGTGAT 58.990 45.455 0.00 0.00 0.00 3.06
12 13 2.422597 CCACGCCTTACAGAAATGTGA 58.577 47.619 0.00 0.00 0.00 3.58
13 14 1.135689 GCCACGCCTTACAGAAATGTG 60.136 52.381 0.00 0.00 0.00 3.21
14 15 1.165270 GCCACGCCTTACAGAAATGT 58.835 50.000 0.00 0.00 0.00 2.71
15 16 1.164411 TGCCACGCCTTACAGAAATG 58.836 50.000 0.00 0.00 0.00 2.32
16 17 1.904287 TTGCCACGCCTTACAGAAAT 58.096 45.000 0.00 0.00 0.00 2.17
17 18 1.681538 TTTGCCACGCCTTACAGAAA 58.318 45.000 0.00 0.00 0.00 2.52
18 19 1.681538 TTTTGCCACGCCTTACAGAA 58.318 45.000 0.00 0.00 0.00 3.02
19 20 1.681538 TTTTTGCCACGCCTTACAGA 58.318 45.000 0.00 0.00 0.00 3.41
40 41 7.485595 GCATTTTGAAGCACTGAATTTGTTTTT 59.514 29.630 0.00 0.00 0.00 1.94
41 42 6.968335 GCATTTTGAAGCACTGAATTTGTTTT 59.032 30.769 0.00 0.00 0.00 2.43
42 43 6.488817 GCATTTTGAAGCACTGAATTTGTTT 58.511 32.000 0.00 0.00 0.00 2.83
43 44 5.276963 CGCATTTTGAAGCACTGAATTTGTT 60.277 36.000 0.00 0.00 0.00 2.83
44 45 4.209703 CGCATTTTGAAGCACTGAATTTGT 59.790 37.500 0.00 0.00 0.00 2.83
45 46 4.209703 ACGCATTTTGAAGCACTGAATTTG 59.790 37.500 0.00 0.00 0.00 2.32
46 47 4.370917 ACGCATTTTGAAGCACTGAATTT 58.629 34.783 0.00 0.00 0.00 1.82
47 48 3.981211 ACGCATTTTGAAGCACTGAATT 58.019 36.364 0.00 0.00 0.00 2.17
48 49 3.648339 ACGCATTTTGAAGCACTGAAT 57.352 38.095 0.00 0.00 0.00 2.57
49 50 3.435105 AACGCATTTTGAAGCACTGAA 57.565 38.095 0.00 0.00 0.00 3.02
50 51 3.114809 CAAACGCATTTTGAAGCACTGA 58.885 40.909 2.24 0.00 46.76 3.41
51 52 3.492725 CAAACGCATTTTGAAGCACTG 57.507 42.857 2.24 0.00 46.76 3.66
59 60 5.888412 AAGCTACTTTCAAACGCATTTTG 57.112 34.783 0.00 2.03 45.38 2.44
60 61 6.902224 AAAAGCTACTTTCAAACGCATTTT 57.098 29.167 0.00 0.00 31.99 1.82
61 62 6.902224 AAAAAGCTACTTTCAAACGCATTT 57.098 29.167 0.00 0.00 31.99 2.32
104 105 1.173043 CCTAGATGGCGTGGCAAAAA 58.827 50.000 0.00 0.00 0.00 1.94
105 106 0.326595 TCCTAGATGGCGTGGCAAAA 59.673 50.000 0.00 0.00 35.26 2.44
106 107 0.326595 TTCCTAGATGGCGTGGCAAA 59.673 50.000 0.00 0.00 35.26 3.68
107 108 0.546122 ATTCCTAGATGGCGTGGCAA 59.454 50.000 0.00 0.00 35.26 4.52
108 109 0.179048 CATTCCTAGATGGCGTGGCA 60.179 55.000 0.00 0.00 35.26 4.92
109 110 0.179045 ACATTCCTAGATGGCGTGGC 60.179 55.000 0.00 0.00 35.26 5.01
110 111 1.138859 TCACATTCCTAGATGGCGTGG 59.861 52.381 0.00 0.00 33.72 4.94
111 112 2.602257 TCACATTCCTAGATGGCGTG 57.398 50.000 0.00 0.00 35.26 5.34
112 113 3.845781 AATCACATTCCTAGATGGCGT 57.154 42.857 0.00 0.00 35.26 5.68
113 114 4.129380 TGAAATCACATTCCTAGATGGCG 58.871 43.478 0.00 0.00 35.26 5.69
114 115 5.766670 TCATGAAATCACATTCCTAGATGGC 59.233 40.000 0.00 0.00 35.26 4.40
115 116 7.664318 TCATCATGAAATCACATTCCTAGATGG 59.336 37.037 0.00 0.00 37.10 3.51
116 117 8.617290 TCATCATGAAATCACATTCCTAGATG 57.383 34.615 0.00 0.00 0.00 2.90
117 118 9.809395 ATTCATCATGAAATCACATTCCTAGAT 57.191 29.630 3.63 0.00 40.12 1.98
118 119 9.636789 AATTCATCATGAAATCACATTCCTAGA 57.363 29.630 3.63 0.00 40.12 2.43
121 122 9.953565 AAAAATTCATCATGAAATCACATTCCT 57.046 25.926 3.63 0.00 40.12 3.36
122 123 9.982291 CAAAAATTCATCATGAAATCACATTCC 57.018 29.630 3.63 0.00 40.12 3.01
123 124 9.485591 GCAAAAATTCATCATGAAATCACATTC 57.514 29.630 3.63 0.00 40.12 2.67
124 125 9.004717 TGCAAAAATTCATCATGAAATCACATT 57.995 25.926 3.63 0.00 40.12 2.71
125 126 8.554835 TGCAAAAATTCATCATGAAATCACAT 57.445 26.923 3.63 0.00 40.12 3.21
126 127 7.118535 CCTGCAAAAATTCATCATGAAATCACA 59.881 33.333 3.63 0.00 40.12 3.58
127 128 7.461107 CCTGCAAAAATTCATCATGAAATCAC 58.539 34.615 3.63 0.00 40.12 3.06
128 129 6.092944 GCCTGCAAAAATTCATCATGAAATCA 59.907 34.615 3.63 0.00 40.12 2.57
129 130 6.092944 TGCCTGCAAAAATTCATCATGAAATC 59.907 34.615 3.63 0.00 40.12 2.17
130 131 5.941058 TGCCTGCAAAAATTCATCATGAAAT 59.059 32.000 3.63 0.00 40.12 2.17
131 132 5.179742 GTGCCTGCAAAAATTCATCATGAAA 59.820 36.000 3.63 0.00 40.12 2.69
132 133 4.691685 GTGCCTGCAAAAATTCATCATGAA 59.308 37.500 1.59 1.59 41.09 2.57
133 134 4.020928 AGTGCCTGCAAAAATTCATCATGA 60.021 37.500 0.00 0.00 0.00 3.07
134 135 4.250464 AGTGCCTGCAAAAATTCATCATG 58.750 39.130 0.00 0.00 0.00 3.07
135 136 4.546829 AGTGCCTGCAAAAATTCATCAT 57.453 36.364 0.00 0.00 0.00 2.45
136 137 4.339872 AAGTGCCTGCAAAAATTCATCA 57.660 36.364 0.00 0.00 0.00 3.07
137 138 5.713025 TCTAAGTGCCTGCAAAAATTCATC 58.287 37.500 0.00 0.00 0.00 2.92
138 139 5.726980 TCTAAGTGCCTGCAAAAATTCAT 57.273 34.783 0.00 0.00 0.00 2.57
139 140 5.528043 TTCTAAGTGCCTGCAAAAATTCA 57.472 34.783 0.00 0.00 0.00 2.57
140 141 7.425577 AAATTCTAAGTGCCTGCAAAAATTC 57.574 32.000 0.00 0.00 0.00 2.17
141 142 7.806409 AAAATTCTAAGTGCCTGCAAAAATT 57.194 28.000 0.00 0.00 0.00 1.82
142 143 7.282901 ACAAAAATTCTAAGTGCCTGCAAAAAT 59.717 29.630 0.00 0.00 0.00 1.82
143 144 6.597280 ACAAAAATTCTAAGTGCCTGCAAAAA 59.403 30.769 0.00 0.00 0.00 1.94
144 145 6.112058 ACAAAAATTCTAAGTGCCTGCAAAA 58.888 32.000 0.00 0.00 0.00 2.44
145 146 5.669477 ACAAAAATTCTAAGTGCCTGCAAA 58.331 33.333 0.00 0.00 0.00 3.68
146 147 5.163468 TGACAAAAATTCTAAGTGCCTGCAA 60.163 36.000 0.00 0.00 0.00 4.08
147 148 4.340666 TGACAAAAATTCTAAGTGCCTGCA 59.659 37.500 0.00 0.00 0.00 4.41
148 149 4.870363 TGACAAAAATTCTAAGTGCCTGC 58.130 39.130 0.00 0.00 0.00 4.85
149 150 6.925165 ACATTGACAAAAATTCTAAGTGCCTG 59.075 34.615 0.00 0.00 0.00 4.85
150 151 7.054491 ACATTGACAAAAATTCTAAGTGCCT 57.946 32.000 0.00 0.00 0.00 4.75
151 152 7.713764 AACATTGACAAAAATTCTAAGTGCC 57.286 32.000 0.00 0.00 0.00 5.01
152 153 9.034544 AGAAACATTGACAAAAATTCTAAGTGC 57.965 29.630 9.63 0.00 0.00 4.40
203 204 9.065871 CGAGCTCATTTAAAAATCGAAAAGAAT 57.934 29.630 15.40 0.00 0.00 2.40
204 205 7.537306 CCGAGCTCATTTAAAAATCGAAAAGAA 59.463 33.333 15.40 0.00 0.00 2.52
205 206 7.021196 CCGAGCTCATTTAAAAATCGAAAAGA 58.979 34.615 15.40 0.00 0.00 2.52
206 207 6.251376 CCCGAGCTCATTTAAAAATCGAAAAG 59.749 38.462 15.40 0.00 0.00 2.27
207 208 6.090129 CCCGAGCTCATTTAAAAATCGAAAA 58.910 36.000 15.40 0.00 0.00 2.29
208 209 5.182380 ACCCGAGCTCATTTAAAAATCGAAA 59.818 36.000 15.40 0.00 0.00 3.46
209 210 4.698304 ACCCGAGCTCATTTAAAAATCGAA 59.302 37.500 15.40 0.00 0.00 3.71
210 211 4.094294 CACCCGAGCTCATTTAAAAATCGA 59.906 41.667 15.40 0.00 0.00 3.59
211 212 4.342772 CACCCGAGCTCATTTAAAAATCG 58.657 43.478 15.40 0.00 0.00 3.34
212 213 4.105486 GCACCCGAGCTCATTTAAAAATC 58.895 43.478 15.40 0.00 0.00 2.17
213 214 3.509575 TGCACCCGAGCTCATTTAAAAAT 59.490 39.130 15.40 0.00 34.99 1.82
214 215 2.887783 TGCACCCGAGCTCATTTAAAAA 59.112 40.909 15.40 0.00 34.99 1.94
215 216 2.487762 CTGCACCCGAGCTCATTTAAAA 59.512 45.455 15.40 0.00 34.99 1.52
216 217 2.083774 CTGCACCCGAGCTCATTTAAA 58.916 47.619 15.40 0.00 34.99 1.52
217 218 1.277842 TCTGCACCCGAGCTCATTTAA 59.722 47.619 15.40 0.00 34.99 1.52
218 219 0.901827 TCTGCACCCGAGCTCATTTA 59.098 50.000 15.40 0.00 34.99 1.40
219 220 0.254178 ATCTGCACCCGAGCTCATTT 59.746 50.000 15.40 0.00 34.99 2.32
220 221 0.254178 AATCTGCACCCGAGCTCATT 59.746 50.000 15.40 0.00 34.99 2.57
221 222 1.069823 CTAATCTGCACCCGAGCTCAT 59.930 52.381 15.40 0.00 34.99 2.90
222 223 0.461548 CTAATCTGCACCCGAGCTCA 59.538 55.000 15.40 0.00 34.99 4.26
223 224 0.878086 GCTAATCTGCACCCGAGCTC 60.878 60.000 2.73 2.73 34.99 4.09
224 225 1.144936 GCTAATCTGCACCCGAGCT 59.855 57.895 0.00 0.00 34.99 4.09
225 226 1.889573 GGCTAATCTGCACCCGAGC 60.890 63.158 0.00 0.00 34.04 5.03
226 227 1.592669 CGGCTAATCTGCACCCGAG 60.593 63.158 0.00 0.00 41.34 4.63
227 228 2.499205 CGGCTAATCTGCACCCGA 59.501 61.111 0.00 0.00 41.34 5.14
228 229 3.272334 GCGGCTAATCTGCACCCG 61.272 66.667 0.00 0.00 46.35 5.28
233 234 2.967615 GGGACGCGGCTAATCTGC 60.968 66.667 13.91 0.00 43.66 4.26
234 235 1.153449 TTGGGACGCGGCTAATCTG 60.153 57.895 13.91 0.00 0.00 2.90
235 236 1.144057 CTTGGGACGCGGCTAATCT 59.856 57.895 13.91 0.00 0.00 2.40
236 237 2.534903 GCTTGGGACGCGGCTAATC 61.535 63.158 13.91 0.00 0.00 1.75
237 238 2.513897 GCTTGGGACGCGGCTAAT 60.514 61.111 13.91 0.00 0.00 1.73
238 239 3.323758 ATGCTTGGGACGCGGCTAA 62.324 57.895 13.91 7.00 0.00 3.09
239 240 3.781307 ATGCTTGGGACGCGGCTA 61.781 61.111 13.91 0.00 0.00 3.93
244 245 2.124736 TAGGCATGCTTGGGACGC 60.125 61.111 18.92 0.00 0.00 5.19
245 246 0.392998 AAGTAGGCATGCTTGGGACG 60.393 55.000 18.92 0.00 29.27 4.79
246 247 1.065126 AGAAGTAGGCATGCTTGGGAC 60.065 52.381 18.92 5.30 30.75 4.46
247 248 1.289160 AGAAGTAGGCATGCTTGGGA 58.711 50.000 18.92 0.00 30.75 4.37
248 249 2.019984 GAAGAAGTAGGCATGCTTGGG 58.980 52.381 18.92 0.00 30.75 4.12
249 250 2.019984 GGAAGAAGTAGGCATGCTTGG 58.980 52.381 18.92 0.00 30.75 3.61
250 251 1.667724 CGGAAGAAGTAGGCATGCTTG 59.332 52.381 18.92 0.00 30.75 4.01
251 252 1.279271 ACGGAAGAAGTAGGCATGCTT 59.721 47.619 18.92 13.45 33.62 3.91
252 253 0.905357 ACGGAAGAAGTAGGCATGCT 59.095 50.000 18.92 6.26 0.00 3.79
253 254 1.009829 CACGGAAGAAGTAGGCATGC 58.990 55.000 9.90 9.90 0.00 4.06
254 255 2.386661 ACACGGAAGAAGTAGGCATG 57.613 50.000 0.00 0.00 0.00 4.06
255 256 3.118738 CCTTACACGGAAGAAGTAGGCAT 60.119 47.826 0.00 0.00 0.00 4.40
256 257 2.232941 CCTTACACGGAAGAAGTAGGCA 59.767 50.000 0.00 0.00 0.00 4.75
257 258 2.233186 ACCTTACACGGAAGAAGTAGGC 59.767 50.000 0.00 0.00 0.00 3.93
258 259 4.532314 AACCTTACACGGAAGAAGTAGG 57.468 45.455 0.00 0.00 0.00 3.18
259 260 7.150640 ACTAAAACCTTACACGGAAGAAGTAG 58.849 38.462 0.00 0.00 0.00 2.57
260 261 7.054491 ACTAAAACCTTACACGGAAGAAGTA 57.946 36.000 0.00 0.00 0.00 2.24
261 262 5.922053 ACTAAAACCTTACACGGAAGAAGT 58.078 37.500 0.00 0.00 0.00 3.01
262 263 6.656003 CAACTAAAACCTTACACGGAAGAAG 58.344 40.000 0.00 0.00 0.00 2.85
263 264 5.007921 GCAACTAAAACCTTACACGGAAGAA 59.992 40.000 0.00 0.00 0.00 2.52
264 265 4.512571 GCAACTAAAACCTTACACGGAAGA 59.487 41.667 0.00 0.00 0.00 2.87
265 266 4.273969 TGCAACTAAAACCTTACACGGAAG 59.726 41.667 0.00 0.00 0.00 3.46
266 267 4.197750 TGCAACTAAAACCTTACACGGAA 58.802 39.130 0.00 0.00 0.00 4.30
267 268 3.806380 TGCAACTAAAACCTTACACGGA 58.194 40.909 0.00 0.00 0.00 4.69
268 269 4.379082 GGATGCAACTAAAACCTTACACGG 60.379 45.833 0.00 0.00 0.00 4.94
269 270 4.214545 TGGATGCAACTAAAACCTTACACG 59.785 41.667 0.00 0.00 0.00 4.49
270 271 5.699097 TGGATGCAACTAAAACCTTACAC 57.301 39.130 0.00 0.00 0.00 2.90
271 272 6.909550 ATTGGATGCAACTAAAACCTTACA 57.090 33.333 0.12 0.00 0.00 2.41
272 273 8.520351 AGTTATTGGATGCAACTAAAACCTTAC 58.480 33.333 0.12 0.00 30.89 2.34
273 274 8.519526 CAGTTATTGGATGCAACTAAAACCTTA 58.480 33.333 0.12 0.00 31.46 2.69
274 275 7.015195 ACAGTTATTGGATGCAACTAAAACCTT 59.985 33.333 0.12 0.00 31.46 3.50
275 276 6.493458 ACAGTTATTGGATGCAACTAAAACCT 59.507 34.615 0.12 0.00 31.46 3.50
276 277 6.687604 ACAGTTATTGGATGCAACTAAAACC 58.312 36.000 0.12 0.00 31.46 3.27
279 280 9.116067 GGTATACAGTTATTGGATGCAACTAAA 57.884 33.333 0.12 0.00 34.62 1.85
280 281 8.268605 TGGTATACAGTTATTGGATGCAACTAA 58.731 33.333 0.12 0.00 34.62 2.24
281 282 7.797062 TGGTATACAGTTATTGGATGCAACTA 58.203 34.615 0.12 0.00 34.62 2.24
282 283 6.658849 TGGTATACAGTTATTGGATGCAACT 58.341 36.000 0.12 0.00 34.62 3.16
283 284 6.935741 TGGTATACAGTTATTGGATGCAAC 57.064 37.500 0.12 0.00 34.62 4.17
298 299 0.032952 GGCGGCGAATCTGGTATACA 59.967 55.000 12.98 0.00 0.00 2.29
299 300 0.032952 TGGCGGCGAATCTGGTATAC 59.967 55.000 12.98 0.00 0.00 1.47
300 301 0.753867 TTGGCGGCGAATCTGGTATA 59.246 50.000 12.98 0.00 0.00 1.47
301 302 0.532862 CTTGGCGGCGAATCTGGTAT 60.533 55.000 12.98 0.00 0.00 2.73
302 303 1.153449 CTTGGCGGCGAATCTGGTA 60.153 57.895 12.98 0.00 0.00 3.25
303 304 2.436646 CTTGGCGGCGAATCTGGT 60.437 61.111 12.98 0.00 0.00 4.00
304 305 3.204827 CCTTGGCGGCGAATCTGG 61.205 66.667 12.98 1.00 0.00 3.86
305 306 1.586154 AAACCTTGGCGGCGAATCTG 61.586 55.000 12.98 0.00 35.61 2.90
306 307 1.303317 AAACCTTGGCGGCGAATCT 60.303 52.632 12.98 0.00 35.61 2.40
307 308 1.136774 GAAACCTTGGCGGCGAATC 59.863 57.895 12.98 0.00 35.61 2.52
308 309 2.340328 GGAAACCTTGGCGGCGAAT 61.340 57.895 12.98 0.00 35.61 3.34
309 310 2.981350 GGAAACCTTGGCGGCGAA 60.981 61.111 12.98 0.00 35.61 4.70
310 311 3.561120 ATGGAAACCTTGGCGGCGA 62.561 57.895 12.98 0.14 35.61 5.54
311 312 3.051392 GATGGAAACCTTGGCGGCG 62.051 63.158 0.51 0.51 35.61 6.46
312 313 1.322538 ATGATGGAAACCTTGGCGGC 61.323 55.000 0.00 0.00 35.61 6.53
313 314 0.457035 CATGATGGAAACCTTGGCGG 59.543 55.000 0.00 0.00 39.35 6.13
314 315 0.457035 CCATGATGGAAACCTTGGCG 59.543 55.000 5.27 0.00 40.96 5.69
315 316 0.176449 GCCATGATGGAAACCTTGGC 59.824 55.000 17.22 0.98 40.96 4.52
316 317 0.457035 CGCCATGATGGAAACCTTGG 59.543 55.000 17.22 0.00 40.96 3.61
317 318 0.179129 GCGCCATGATGGAAACCTTG 60.179 55.000 17.22 0.00 40.96 3.61
318 319 0.323725 AGCGCCATGATGGAAACCTT 60.324 50.000 17.22 0.00 40.96 3.50
319 320 0.546122 TAGCGCCATGATGGAAACCT 59.454 50.000 17.22 7.20 40.96 3.50
320 321 0.663153 GTAGCGCCATGATGGAAACC 59.337 55.000 17.22 0.00 40.96 3.27
321 322 0.304705 CGTAGCGCCATGATGGAAAC 59.695 55.000 17.22 5.81 40.96 2.78
322 323 0.813610 CCGTAGCGCCATGATGGAAA 60.814 55.000 17.22 0.00 40.96 3.13
323 324 1.227527 CCGTAGCGCCATGATGGAA 60.228 57.895 17.22 0.00 40.96 3.53
324 325 1.471829 ATCCGTAGCGCCATGATGGA 61.472 55.000 17.22 8.25 40.96 3.41
325 326 1.004560 ATCCGTAGCGCCATGATGG 60.005 57.895 7.21 7.21 41.55 3.51
326 327 1.347097 CGATCCGTAGCGCCATGATG 61.347 60.000 2.29 0.00 0.00 3.07
327 328 1.080501 CGATCCGTAGCGCCATGAT 60.081 57.895 2.29 0.65 0.00 2.45
328 329 2.335011 CGATCCGTAGCGCCATGA 59.665 61.111 2.29 0.00 0.00 3.07
329 330 2.027605 ACGATCCGTAGCGCCATG 59.972 61.111 2.29 0.00 38.73 3.66
330 331 2.027605 CACGATCCGTAGCGCCAT 59.972 61.111 2.29 0.00 38.32 4.40
331 332 4.201679 CCACGATCCGTAGCGCCA 62.202 66.667 2.29 0.00 38.32 5.69
333 334 4.865761 TGCCACGATCCGTAGCGC 62.866 66.667 0.00 0.00 46.25 5.92
334 335 2.954868 GTGCCACGATCCGTAGCG 60.955 66.667 5.58 0.00 46.25 4.26
335 336 2.954868 CGTGCCACGATCCGTAGC 60.955 66.667 12.85 3.17 46.05 3.58
336 337 2.795973 TCGTGCCACGATCCGTAG 59.204 61.111 17.22 0.00 46.73 3.51
344 345 1.443872 GTGGTAGAGTCGTGCCACG 60.444 63.158 11.80 11.80 41.37 4.94
345 346 4.573162 GTGGTAGAGTCGTGCCAC 57.427 61.111 14.71 14.71 43.52 5.01
346 347 1.116536 TTGGTGGTAGAGTCGTGCCA 61.117 55.000 0.27 0.27 0.00 4.92
347 348 0.389948 CTTGGTGGTAGAGTCGTGCC 60.390 60.000 0.00 0.00 0.00 5.01
348 349 0.317479 ACTTGGTGGTAGAGTCGTGC 59.683 55.000 0.00 0.00 0.00 5.34
349 350 2.814280 AACTTGGTGGTAGAGTCGTG 57.186 50.000 0.00 0.00 0.00 4.35
350 351 5.479124 AATTAACTTGGTGGTAGAGTCGT 57.521 39.130 0.00 0.00 0.00 4.34
351 352 6.860080 TCTAATTAACTTGGTGGTAGAGTCG 58.140 40.000 0.00 0.00 0.00 4.18
352 353 7.275123 CGTTCTAATTAACTTGGTGGTAGAGTC 59.725 40.741 0.00 0.00 0.00 3.36
353 354 7.039504 TCGTTCTAATTAACTTGGTGGTAGAGT 60.040 37.037 0.00 0.00 0.00 3.24
354 355 7.318141 TCGTTCTAATTAACTTGGTGGTAGAG 58.682 38.462 0.00 0.00 0.00 2.43
355 356 7.230849 TCGTTCTAATTAACTTGGTGGTAGA 57.769 36.000 0.00 0.00 0.00 2.59
356 357 7.043590 CGATCGTTCTAATTAACTTGGTGGTAG 60.044 40.741 7.03 0.00 0.00 3.18
357 358 6.753279 CGATCGTTCTAATTAACTTGGTGGTA 59.247 38.462 7.03 0.00 0.00 3.25
358 359 5.579511 CGATCGTTCTAATTAACTTGGTGGT 59.420 40.000 7.03 0.00 0.00 4.16
359 360 5.501897 GCGATCGTTCTAATTAACTTGGTGG 60.502 44.000 17.81 0.00 0.00 4.61
360 361 5.062934 TGCGATCGTTCTAATTAACTTGGTG 59.937 40.000 17.81 0.00 0.00 4.17
361 362 5.172934 TGCGATCGTTCTAATTAACTTGGT 58.827 37.500 17.81 0.00 0.00 3.67
362 363 5.712217 TGCGATCGTTCTAATTAACTTGG 57.288 39.130 17.81 0.00 0.00 3.61
363 364 8.601243 ATTTTGCGATCGTTCTAATTAACTTG 57.399 30.769 17.81 0.00 0.00 3.16
364 365 9.274065 GAATTTTGCGATCGTTCTAATTAACTT 57.726 29.630 17.81 1.12 0.00 2.66
365 366 7.634817 CGAATTTTGCGATCGTTCTAATTAACT 59.365 33.333 17.81 0.00 0.00 2.24
366 367 7.561010 GCGAATTTTGCGATCGTTCTAATTAAC 60.561 37.037 17.81 9.11 38.75 2.01
367 368 6.409761 GCGAATTTTGCGATCGTTCTAATTAA 59.590 34.615 17.81 1.09 38.75 1.40
368 369 5.899696 GCGAATTTTGCGATCGTTCTAATTA 59.100 36.000 17.81 0.45 38.75 1.40
369 370 4.728608 GCGAATTTTGCGATCGTTCTAATT 59.271 37.500 17.81 15.86 38.75 1.40
370 371 4.201773 TGCGAATTTTGCGATCGTTCTAAT 60.202 37.500 17.81 8.72 38.75 1.73
371 372 3.123790 TGCGAATTTTGCGATCGTTCTAA 59.876 39.130 17.81 6.75 38.75 2.10
372 373 2.668945 TGCGAATTTTGCGATCGTTCTA 59.331 40.909 17.81 0.72 38.75 2.10
373 374 1.463056 TGCGAATTTTGCGATCGTTCT 59.537 42.857 17.81 0.00 38.75 3.01
374 375 1.877101 TGCGAATTTTGCGATCGTTC 58.123 45.000 17.81 10.84 38.75 3.95
375 376 2.323939 TTGCGAATTTTGCGATCGTT 57.676 40.000 17.81 1.84 38.75 3.85
376 377 2.241722 CTTTGCGAATTTTGCGATCGT 58.758 42.857 17.81 0.00 38.75 3.73
377 378 1.008137 GCTTTGCGAATTTTGCGATCG 60.008 47.619 11.69 11.69 39.47 3.69
378 379 2.253603 AGCTTTGCGAATTTTGCGATC 58.746 42.857 4.22 0.00 34.24 3.69
379 380 2.352503 AGCTTTGCGAATTTTGCGAT 57.647 40.000 4.22 0.00 34.24 4.58
380 381 2.225491 AGTAGCTTTGCGAATTTTGCGA 59.775 40.909 0.00 0.00 34.24 5.10
381 382 2.339400 CAGTAGCTTTGCGAATTTTGCG 59.661 45.455 0.00 0.00 34.24 4.85
382 383 2.091122 GCAGTAGCTTTGCGAATTTTGC 59.909 45.455 7.08 1.39 37.91 3.68
383 384 2.663119 GGCAGTAGCTTTGCGAATTTTG 59.337 45.455 14.41 0.00 42.42 2.44
384 385 2.558359 AGGCAGTAGCTTTGCGAATTTT 59.442 40.909 14.41 0.00 42.42 1.82
385 386 2.162681 AGGCAGTAGCTTTGCGAATTT 58.837 42.857 14.41 0.00 42.42 1.82
386 387 1.826385 AGGCAGTAGCTTTGCGAATT 58.174 45.000 14.41 0.00 42.42 2.17
387 388 2.691409 TAGGCAGTAGCTTTGCGAAT 57.309 45.000 14.41 7.58 42.42 3.34
388 389 2.465860 TTAGGCAGTAGCTTTGCGAA 57.534 45.000 14.41 9.60 42.42 4.70
389 390 2.465860 TTTAGGCAGTAGCTTTGCGA 57.534 45.000 14.41 4.93 42.42 5.10
390 391 3.764885 AATTTAGGCAGTAGCTTTGCG 57.235 42.857 14.41 0.00 42.42 4.85
391 392 5.059404 TCAAATTTAGGCAGTAGCTTTGC 57.941 39.130 12.95 12.95 41.70 3.68
392 393 5.967674 CGATCAAATTTAGGCAGTAGCTTTG 59.032 40.000 0.00 0.00 41.70 2.77
393 394 5.880332 TCGATCAAATTTAGGCAGTAGCTTT 59.120 36.000 0.00 0.00 41.70 3.51
394 395 5.294552 GTCGATCAAATTTAGGCAGTAGCTT 59.705 40.000 0.00 0.00 41.70 3.74
395 396 4.811557 GTCGATCAAATTTAGGCAGTAGCT 59.188 41.667 0.00 0.00 41.70 3.32
396 397 4.811557 AGTCGATCAAATTTAGGCAGTAGC 59.188 41.667 0.00 0.00 41.10 3.58
397 398 5.235186 CCAGTCGATCAAATTTAGGCAGTAG 59.765 44.000 0.00 0.00 0.00 2.57
398 399 5.116180 CCAGTCGATCAAATTTAGGCAGTA 58.884 41.667 0.00 0.00 0.00 2.74
399 400 3.941483 CCAGTCGATCAAATTTAGGCAGT 59.059 43.478 0.00 0.00 0.00 4.40
400 401 3.941483 ACCAGTCGATCAAATTTAGGCAG 59.059 43.478 0.00 0.00 0.00 4.85
401 402 3.950397 ACCAGTCGATCAAATTTAGGCA 58.050 40.909 0.00 0.00 0.00 4.75
402 403 5.353123 TGTTACCAGTCGATCAAATTTAGGC 59.647 40.000 0.00 0.00 0.00 3.93
403 404 6.456988 GCTGTTACCAGTCGATCAAATTTAGG 60.457 42.308 0.00 0.00 41.02 2.69
404 405 6.456988 GGCTGTTACCAGTCGATCAAATTTAG 60.457 42.308 0.00 0.00 41.02 1.85
405 406 5.353123 GGCTGTTACCAGTCGATCAAATTTA 59.647 40.000 0.00 0.00 41.02 1.40
406 407 4.156008 GGCTGTTACCAGTCGATCAAATTT 59.844 41.667 0.00 0.00 41.02 1.82
407 408 3.689649 GGCTGTTACCAGTCGATCAAATT 59.310 43.478 0.00 0.00 41.02 1.82
408 409 3.270877 GGCTGTTACCAGTCGATCAAAT 58.729 45.455 0.00 0.00 41.02 2.32
409 410 2.695359 GGCTGTTACCAGTCGATCAAA 58.305 47.619 0.00 0.00 41.02 2.69
410 411 2.380084 GGCTGTTACCAGTCGATCAA 57.620 50.000 0.00 0.00 41.02 2.57
416 417 4.737855 TCATTCTAGGCTGTTACCAGTC 57.262 45.455 0.00 0.00 43.91 3.51
417 418 5.700402 ATTCATTCTAGGCTGTTACCAGT 57.300 39.130 0.00 0.00 41.02 4.00
418 419 8.682936 ATTAATTCATTCTAGGCTGTTACCAG 57.317 34.615 0.00 0.00 41.91 4.00
419 420 8.271458 TGATTAATTCATTCTAGGCTGTTACCA 58.729 33.333 0.00 0.00 0.00 3.25
420 421 8.677148 TGATTAATTCATTCTAGGCTGTTACC 57.323 34.615 0.00 0.00 0.00 2.85
423 424 8.985315 TGATGATTAATTCATTCTAGGCTGTT 57.015 30.769 0.00 0.00 45.29 3.16
424 425 8.216423 ACTGATGATTAATTCATTCTAGGCTGT 58.784 33.333 0.00 0.00 45.29 4.40
425 426 8.504815 CACTGATGATTAATTCATTCTAGGCTG 58.495 37.037 0.00 0.00 45.29 4.85
426 427 8.435187 TCACTGATGATTAATTCATTCTAGGCT 58.565 33.333 0.00 0.00 45.29 4.58
427 428 8.613060 TCACTGATGATTAATTCATTCTAGGC 57.387 34.615 0.00 0.00 45.29 3.93
471 472 6.947464 ACTTCCGATTTCTCCTAATTGAGAA 58.053 36.000 4.53 4.53 46.77 2.87
472 473 6.546428 ACTTCCGATTTCTCCTAATTGAGA 57.454 37.500 0.00 0.00 39.58 3.27
473 474 7.928706 ACATACTTCCGATTTCTCCTAATTGAG 59.071 37.037 0.00 0.00 0.00 3.02
474 475 7.792032 ACATACTTCCGATTTCTCCTAATTGA 58.208 34.615 0.00 0.00 0.00 2.57
475 476 9.197694 CTACATACTTCCGATTTCTCCTAATTG 57.802 37.037 0.00 0.00 0.00 2.32
476 477 8.925338 ACTACATACTTCCGATTTCTCCTAATT 58.075 33.333 0.00 0.00 0.00 1.40
477 478 8.480133 ACTACATACTTCCGATTTCTCCTAAT 57.520 34.615 0.00 0.00 0.00 1.73
478 479 7.893124 ACTACATACTTCCGATTTCTCCTAA 57.107 36.000 0.00 0.00 0.00 2.69
479 480 8.216423 AGTACTACATACTTCCGATTTCTCCTA 58.784 37.037 0.00 0.00 41.71 2.94
480 481 7.061688 AGTACTACATACTTCCGATTTCTCCT 58.938 38.462 0.00 0.00 41.71 3.69
481 482 7.274603 AGTACTACATACTTCCGATTTCTCC 57.725 40.000 0.00 0.00 41.71 3.71
482 483 9.054922 AGTAGTACTACATACTTCCGATTTCTC 57.945 37.037 29.87 1.72 41.71 2.87
483 484 8.977267 AGTAGTACTACATACTTCCGATTTCT 57.023 34.615 29.87 5.33 41.71 2.52
486 487 9.709495 CTCTAGTAGTACTACATACTTCCGATT 57.291 37.037 29.87 11.00 41.71 3.34
487 488 9.087871 TCTCTAGTAGTACTACATACTTCCGAT 57.912 37.037 29.87 11.45 41.71 4.18
488 489 8.470657 TCTCTAGTAGTACTACATACTTCCGA 57.529 38.462 29.87 14.29 41.71 4.55
489 490 9.539825 TTTCTCTAGTAGTACTACATACTTCCG 57.460 37.037 29.87 12.61 41.71 4.30
500 501 9.664332 TGTCGTAATCTTTTCTCTAGTAGTACT 57.336 33.333 8.14 8.14 0.00 2.73
501 502 9.919348 CTGTCGTAATCTTTTCTCTAGTAGTAC 57.081 37.037 0.00 0.00 0.00 2.73
502 503 9.664332 ACTGTCGTAATCTTTTCTCTAGTAGTA 57.336 33.333 0.00 0.00 0.00 1.82
503 504 8.564509 ACTGTCGTAATCTTTTCTCTAGTAGT 57.435 34.615 0.00 0.00 0.00 2.73
509 510 9.543783 AACTTTTACTGTCGTAATCTTTTCTCT 57.456 29.630 0.00 0.00 35.65 3.10
511 512 9.931210 CAAACTTTTACTGTCGTAATCTTTTCT 57.069 29.630 0.00 0.00 35.65 2.52
512 513 9.166126 CCAAACTTTTACTGTCGTAATCTTTTC 57.834 33.333 0.00 0.00 35.65 2.29
513 514 8.895737 TCCAAACTTTTACTGTCGTAATCTTTT 58.104 29.630 0.00 0.00 35.65 2.27
514 515 8.441312 TCCAAACTTTTACTGTCGTAATCTTT 57.559 30.769 0.00 0.00 35.65 2.52
515 516 8.340443 GTTCCAAACTTTTACTGTCGTAATCTT 58.660 33.333 0.00 0.00 35.65 2.40
516 517 7.496591 TGTTCCAAACTTTTACTGTCGTAATCT 59.503 33.333 0.00 0.00 35.65 2.40
517 518 7.585210 GTGTTCCAAACTTTTACTGTCGTAATC 59.415 37.037 0.00 0.00 35.65 1.75
518 519 7.412063 GTGTTCCAAACTTTTACTGTCGTAAT 58.588 34.615 0.00 0.00 35.65 1.89
519 520 6.455380 CGTGTTCCAAACTTTTACTGTCGTAA 60.455 38.462 0.00 0.00 33.94 3.18
520 521 5.005586 CGTGTTCCAAACTTTTACTGTCGTA 59.994 40.000 0.00 0.00 0.00 3.43
521 522 4.201744 CGTGTTCCAAACTTTTACTGTCGT 60.202 41.667 0.00 0.00 0.00 4.34
522 523 4.268522 CGTGTTCCAAACTTTTACTGTCG 58.731 43.478 0.00 0.00 0.00 4.35
523 524 4.033019 GCGTGTTCCAAACTTTTACTGTC 58.967 43.478 0.00 0.00 0.00 3.51
524 525 3.440872 TGCGTGTTCCAAACTTTTACTGT 59.559 39.130 0.00 0.00 0.00 3.55
525 526 3.789224 GTGCGTGTTCCAAACTTTTACTG 59.211 43.478 0.00 0.00 0.00 2.74
526 527 3.692593 AGTGCGTGTTCCAAACTTTTACT 59.307 39.130 0.00 0.00 0.00 2.24
527 528 3.789224 CAGTGCGTGTTCCAAACTTTTAC 59.211 43.478 0.00 0.00 0.00 2.01
528 529 3.440872 ACAGTGCGTGTTCCAAACTTTTA 59.559 39.130 0.00 0.00 34.94 1.52
529 530 2.230266 ACAGTGCGTGTTCCAAACTTTT 59.770 40.909 0.00 0.00 34.94 2.27
530 531 1.816224 ACAGTGCGTGTTCCAAACTTT 59.184 42.857 0.00 0.00 34.94 2.66
531 532 1.132262 CACAGTGCGTGTTCCAAACTT 59.868 47.619 0.00 0.00 41.03 2.66
532 533 0.732571 CACAGTGCGTGTTCCAAACT 59.267 50.000 0.00 0.00 41.03 2.66
533 534 3.234368 CACAGTGCGTGTTCCAAAC 57.766 52.632 0.00 0.00 41.03 2.93
535 536 2.884997 AGGCACAGTGCGTGTTCCAA 62.885 55.000 19.82 0.00 44.49 3.53
536 537 3.399105 AGGCACAGTGCGTGTTCCA 62.399 57.895 19.82 0.00 44.49 3.53
541 542 1.889105 AACAGAGGCACAGTGCGTG 60.889 57.895 25.04 19.86 46.21 5.34
542 543 1.889105 CAACAGAGGCACAGTGCGT 60.889 57.895 20.55 20.55 46.21 5.24
543 544 2.941333 CAACAGAGGCACAGTGCG 59.059 61.111 19.42 7.99 46.21 5.34
544 545 1.895707 AGCAACAGAGGCACAGTGC 60.896 57.895 17.97 17.97 44.08 4.40
545 546 0.816825 ACAGCAACAGAGGCACAGTG 60.817 55.000 0.00 0.00 0.00 3.66
546 547 0.816825 CACAGCAACAGAGGCACAGT 60.817 55.000 0.00 0.00 0.00 3.55
547 548 0.533531 TCACAGCAACAGAGGCACAG 60.534 55.000 0.00 0.00 0.00 3.66
548 549 0.533531 CTCACAGCAACAGAGGCACA 60.534 55.000 0.00 0.00 0.00 4.57
549 550 0.533755 ACTCACAGCAACAGAGGCAC 60.534 55.000 0.00 0.00 33.76 5.01
550 551 0.533531 CACTCACAGCAACAGAGGCA 60.534 55.000 0.00 0.00 33.76 4.75
551 552 1.849976 GCACTCACAGCAACAGAGGC 61.850 60.000 0.00 0.00 33.76 4.70
552 553 1.233285 GGCACTCACAGCAACAGAGG 61.233 60.000 0.00 0.00 33.76 3.69
553 554 1.563435 CGGCACTCACAGCAACAGAG 61.563 60.000 0.00 0.00 35.56 3.35
554 555 1.595109 CGGCACTCACAGCAACAGA 60.595 57.895 0.00 0.00 0.00 3.41
555 556 2.610694 CCGGCACTCACAGCAACAG 61.611 63.158 0.00 0.00 0.00 3.16
556 557 2.591429 CCGGCACTCACAGCAACA 60.591 61.111 0.00 0.00 0.00 3.33
557 558 4.030452 GCCGGCACTCACAGCAAC 62.030 66.667 24.80 0.00 0.00 4.17
561 562 2.360350 ATTGGCCGGCACTCACAG 60.360 61.111 30.85 0.00 0.00 3.66
562 563 2.359850 GATTGGCCGGCACTCACA 60.360 61.111 30.85 14.13 0.00 3.58
563 564 3.499737 CGATTGGCCGGCACTCAC 61.500 66.667 30.85 11.16 0.00 3.51
564 565 4.776322 CCGATTGGCCGGCACTCA 62.776 66.667 30.85 15.00 43.25 3.41
624 625 4.314440 TGGTCGTCAGGCAGGCAC 62.314 66.667 0.00 0.00 0.00 5.01
625 626 4.007644 CTGGTCGTCAGGCAGGCA 62.008 66.667 0.00 0.00 39.76 4.75
632 633 2.878429 CCTCGTCCTGGTCGTCAG 59.122 66.667 12.76 4.44 43.00 3.51
633 634 3.371063 GCCTCGTCCTGGTCGTCA 61.371 66.667 12.76 0.00 0.00 4.35
634 635 4.477975 CGCCTCGTCCTGGTCGTC 62.478 72.222 12.76 3.75 0.00 4.20
636 637 4.180946 CTCGCCTCGTCCTGGTCG 62.181 72.222 7.02 7.02 0.00 4.79
637 638 4.500116 GCTCGCCTCGTCCTGGTC 62.500 72.222 0.00 0.00 0.00 4.02
649 650 3.918220 CTTCACATCGGCGCTCGC 61.918 66.667 7.64 5.60 39.05 5.03
650 651 2.202610 TCTTCACATCGGCGCTCG 60.203 61.111 7.64 9.90 40.90 5.03
651 652 1.880340 CCTCTTCACATCGGCGCTC 60.880 63.158 7.64 0.00 0.00 5.03
652 653 2.185350 CCTCTTCACATCGGCGCT 59.815 61.111 7.64 0.00 0.00 5.92
653 654 1.880340 CTCCTCTTCACATCGGCGC 60.880 63.158 0.00 0.00 0.00 6.53
654 655 0.173481 TTCTCCTCTTCACATCGGCG 59.827 55.000 0.00 0.00 0.00 6.46
655 656 1.646189 GTTCTCCTCTTCACATCGGC 58.354 55.000 0.00 0.00 0.00 5.54
656 657 1.827969 AGGTTCTCCTCTTCACATCGG 59.172 52.381 0.00 0.00 40.58 4.18
668 669 2.182030 CGACAGCCGAGGTTCTCC 59.818 66.667 0.00 0.00 41.76 3.71
669 670 2.182030 CCGACAGCCGAGGTTCTC 59.818 66.667 0.00 0.00 41.76 2.87
670 671 4.070552 GCCGACAGCCGAGGTTCT 62.071 66.667 0.00 0.00 41.76 3.01
699 700 0.744874 TAGCGATCTGGTACACTGCC 59.255 55.000 0.00 0.00 0.00 4.85
700 701 2.194271 GTTAGCGATCTGGTACACTGC 58.806 52.381 0.00 0.00 0.00 4.40
701 702 2.481449 GGGTTAGCGATCTGGTACACTG 60.481 54.545 0.00 0.00 0.00 3.66
702 703 1.755380 GGGTTAGCGATCTGGTACACT 59.245 52.381 0.00 0.00 0.00 3.55
703 704 1.755380 AGGGTTAGCGATCTGGTACAC 59.245 52.381 0.00 0.00 0.00 2.90
704 705 2.154567 AGGGTTAGCGATCTGGTACA 57.845 50.000 0.00 0.00 0.00 2.90
705 706 3.538634 AAAGGGTTAGCGATCTGGTAC 57.461 47.619 0.00 0.00 0.00 3.34
706 707 4.563140 AAAAAGGGTTAGCGATCTGGTA 57.437 40.909 0.00 0.00 0.00 3.25
707 708 3.434940 AAAAAGGGTTAGCGATCTGGT 57.565 42.857 0.00 0.00 0.00 4.00
708 709 6.451064 AAATAAAAAGGGTTAGCGATCTGG 57.549 37.500 0.00 0.00 0.00 3.86
745 746 9.927668 CAGACAGTTTTGGATTTGGTAATTATT 57.072 29.630 0.00 0.00 0.00 1.40
746 747 8.034804 GCAGACAGTTTTGGATTTGGTAATTAT 58.965 33.333 0.00 0.00 0.00 1.28
749 750 5.279456 GGCAGACAGTTTTGGATTTGGTAAT 60.279 40.000 0.00 0.00 0.00 1.89
750 751 4.038642 GGCAGACAGTTTTGGATTTGGTAA 59.961 41.667 0.00 0.00 0.00 2.85
813 888 3.732849 GGGGGAGCCAGGGTTCTG 61.733 72.222 0.00 0.00 40.59 3.02
870 946 1.188863 TACTTCTCCGTAAGTGGGCC 58.811 55.000 0.00 0.00 39.95 5.80
877 953 5.771469 TGTCATTTCGTTACTTCTCCGTAA 58.229 37.500 0.00 0.00 0.00 3.18
921 1002 4.760047 ATCAAACCGAGCGCGCCT 62.760 61.111 30.33 15.76 35.83 5.52
1095 1201 5.705441 GTGTTGACAATACCTTTGATGAGGA 59.295 40.000 3.81 0.00 39.25 3.71
1116 1222 4.640690 AGGGCCCTCTCACGGTGT 62.641 66.667 22.28 0.00 0.00 4.16
1129 1235 1.069935 GTCGGAATAGGCAGAGGGC 59.930 63.158 0.00 0.00 43.74 5.19
1610 2089 3.059884 TCTGACTTTGCATCGACAAGAC 58.940 45.455 2.16 0.00 0.00 3.01
1669 2157 4.987912 CCAACCTTGAATGCGTATGTTTTT 59.012 37.500 0.00 0.00 0.00 1.94
1679 2167 2.415893 CGGATGAACCAACCTTGAATGC 60.416 50.000 0.00 0.00 38.90 3.56
1782 2272 5.751028 TGCAAAACTAAATAACAAGCACCAC 59.249 36.000 0.00 0.00 0.00 4.16
1849 2342 5.705609 ATTGTCCCTAAACACAATCACAC 57.294 39.130 0.00 0.00 38.59 3.82
1850 2343 5.414454 GCTATTGTCCCTAAACACAATCACA 59.586 40.000 0.67 0.00 41.37 3.58
1865 2358 3.936453 TGTTATGTTCGTGGCTATTGTCC 59.064 43.478 0.00 0.00 0.00 4.02
2064 2686 7.272978 TCATTAGGTACAAGCAGATAAGTTCC 58.727 38.462 0.00 0.00 0.00 3.62
2210 2834 1.821136 GGCAATTGGAAGGACTTGAGG 59.179 52.381 7.72 0.00 0.00 3.86
2226 2850 2.124109 TCTGTTGGGCGTTGGCAA 60.124 55.556 0.00 0.00 42.47 4.52
2253 2877 3.270877 ACTTGCTAGAATACCCTTTGCG 58.729 45.455 1.04 0.00 0.00 4.85
2580 3383 3.131709 TCTCCAAGCTTCCTGAACAAG 57.868 47.619 0.00 0.00 0.00 3.16
2582 3385 3.136443 TCTTTCTCCAAGCTTCCTGAACA 59.864 43.478 0.00 0.00 31.70 3.18
2903 3712 5.816955 AAATCAGAACTATCTCTAGGGCC 57.183 43.478 0.00 0.00 32.03 5.80
3009 3818 0.108804 CAGCGTAGATGGTTCACGGT 60.109 55.000 0.00 0.00 46.18 4.83
3406 4218 4.304110 CCAGTAAAGCGTCAGTGTTTCTA 58.696 43.478 0.00 0.00 0.00 2.10
3538 4350 2.487934 TGACTTGCTTTCTCACTGCTC 58.512 47.619 0.00 0.00 0.00 4.26
3813 4628 7.744087 TCGGATGTATTATTTTCCAAGATGG 57.256 36.000 0.00 0.00 39.43 3.51
4714 5703 4.212636 TGAGATGAATGTTGCGCATCATAG 59.787 41.667 28.91 0.00 40.57 2.23
5073 6071 8.866970 AGGTTAACCAGTCGGATATTTTTAAA 57.133 30.769 26.26 0.00 38.89 1.52
5085 6083 8.534778 GTCGTTTAATTATAGGTTAACCAGTCG 58.465 37.037 26.26 14.07 38.89 4.18
5315 6340 2.541556 GAGTGGCAAGTCCGATTAGAC 58.458 52.381 0.00 0.00 37.80 2.59
5336 6361 9.623000 TTCCTCTATATCAAATATCATGGCATG 57.377 33.333 21.42 21.42 0.00 4.06
5720 6960 8.285776 ACACAACTACATACACGTTAGTAAAC 57.714 34.615 0.00 0.00 0.00 2.01
5786 7026 6.873076 GGTGAAATTTAACATTGCATCCTGAA 59.127 34.615 7.99 0.00 0.00 3.02
5998 7238 1.511887 GTTACGCAAGCATGGCACG 60.512 57.895 0.00 0.00 45.62 5.34
6012 7252 5.235516 TCGAAGAGGTGAATGAAAGGTTAC 58.764 41.667 0.00 0.00 0.00 2.50
6220 7460 4.994852 GTGACTATATGCTTATTTGCCGGA 59.005 41.667 5.05 0.00 0.00 5.14
6528 7768 7.716998 GCTAGAAATGAAACCCATAAGATCTCA 59.283 37.037 0.00 0.00 34.45 3.27
6572 7813 3.371965 GGAGGTGATACAACCCTCAGTA 58.628 50.000 7.19 0.00 45.42 2.74
6673 7926 1.234806 ACATGGCTGGGGGTCATTAT 58.765 50.000 0.00 0.00 38.32 1.28
7073 8326 2.874457 GCAGGGGAATTGTTCTACGTGT 60.874 50.000 0.00 0.00 0.00 4.49
7177 8462 1.081481 TCCAGGACCTCCACAGTAGA 58.919 55.000 0.00 0.00 38.89 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.