Multiple sequence alignment - TraesCS3D01G388300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G388300 chr3D 100.000 6482 0 0 1 6482 503737634 503744115 0.000000e+00 11971.0
1 TraesCS3D01G388300 chr3D 95.082 61 3 0 5022 5082 503742597 503742657 5.350000e-16 97.1
2 TraesCS3D01G388300 chr3D 95.082 61 3 0 4964 5024 503742655 503742715 5.350000e-16 97.1
3 TraesCS3D01G388300 chr3A 89.474 4313 265 71 66 4274 642033862 642038089 0.000000e+00 5275.0
4 TraesCS3D01G388300 chr3A 91.541 863 42 10 5022 5862 642039109 642039962 0.000000e+00 1160.0
5 TraesCS3D01G388300 chr3A 88.595 605 44 15 5883 6479 642040026 642040613 0.000000e+00 712.0
6 TraesCS3D01G388300 chr3A 92.448 384 28 1 4455 4837 642038369 642038752 1.230000e-151 547.0
7 TraesCS3D01G388300 chr3A 85.714 231 10 10 4817 5024 642038939 642039169 8.460000e-54 222.0
8 TraesCS3D01G388300 chr3B 91.136 3452 187 42 911 4274 664891782 664895202 0.000000e+00 4569.0
9 TraesCS3D01G388300 chr3B 92.941 850 30 8 5022 5862 664896026 664896854 0.000000e+00 1210.0
10 TraesCS3D01G388300 chr3B 91.283 608 36 13 5880 6482 664896917 664897512 0.000000e+00 813.0
11 TraesCS3D01G388300 chr3B 89.402 585 38 12 4455 5023 664895508 664896084 0.000000e+00 715.0
12 TraesCS3D01G388300 chr3B 86.501 563 44 9 66 628 664890432 664890962 2.010000e-164 590.0
13 TraesCS3D01G388300 chr3B 88.525 183 18 3 4275 4456 664895260 664895440 1.090000e-52 219.0
14 TraesCS3D01G388300 chr3B 88.095 126 7 4 711 835 664891128 664891246 6.770000e-30 143.0
15 TraesCS3D01G388300 chr3B 80.105 191 7 8 911 1070 664891263 664891453 5.310000e-21 113.0
16 TraesCS3D01G388300 chr5B 85.326 368 33 14 5883 6239 31188158 31188515 1.720000e-95 361.0
17 TraesCS3D01G388300 chr5B 84.709 327 22 5 5539 5857 31272495 31272801 1.060000e-77 302.0
18 TraesCS3D01G388300 chr5B 84.498 329 23 7 5539 5859 31187781 31188089 3.800000e-77 300.0
19 TraesCS3D01G388300 chr5B 85.782 211 9 12 6038 6239 31281346 31281544 3.060000e-48 204.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G388300 chr3D 503737634 503744115 6481 False 4055.066667 11971 96.721333 1 6482 3 chr3D.!!$F1 6481
1 TraesCS3D01G388300 chr3A 642033862 642040613 6751 False 1583.200000 5275 89.554400 66 6479 5 chr3A.!!$F1 6413
2 TraesCS3D01G388300 chr3B 664890432 664897512 7080 False 1046.500000 4569 88.498500 66 6482 8 chr3B.!!$F1 6416
3 TraesCS3D01G388300 chr5B 31187781 31188515 734 False 330.500000 361 84.912000 5539 6239 2 chr5B.!!$F3 700

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
410 411 0.109086 CAGAGAAAGCGAGCTCGGAA 60.109 55.0 35.10 0.0 40.23 4.30 F
1537 2208 0.165944 CGAGCCTTTAAACCTGCGTG 59.834 55.0 0.00 0.0 0.00 5.34 F
3031 3773 0.179018 GTGGCACCCTTCTGTGTTCT 60.179 55.0 6.29 0.0 38.52 3.01 F
3237 3980 0.662619 TGTTGCTTCTCAAACCTGCG 59.337 50.0 0.00 0.0 36.26 5.18 F
4588 5529 0.178816 TTGGGGGAGGATTTGGAGGA 60.179 55.0 0.00 0.0 0.00 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1603 2274 0.107165 GCAGAACAGGGGGTGATACC 60.107 60.000 0.00 0.0 37.60 2.73 R
3465 4210 0.036010 AGCTCCCGTTCATGGACTTG 60.036 55.000 1.86 0.0 0.00 3.16 R
3850 4597 0.839853 GATGGGAGGGGCAGCTAGAT 60.840 60.000 0.00 0.0 0.00 1.98 R
4642 5583 1.202222 CCAATTCGCCTGATGTTCAGC 60.202 52.381 0.00 0.0 42.98 4.26 R
5791 6986 0.036010 CAGGCAAGACCGGAGAATGT 60.036 55.000 9.46 0.0 46.52 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 9.734620 TTCAAGTAAACTGAACAATTTGATCTG 57.265 29.630 2.79 7.61 0.00 2.90
49 50 9.119418 TCAAGTAAACTGAACAATTTGATCTGA 57.881 29.630 16.69 4.47 0.00 3.27
50 51 9.734620 CAAGTAAACTGAACAATTTGATCTGAA 57.265 29.630 16.69 3.58 0.00 3.02
52 53 9.736023 AGTAAACTGAACAATTTGATCTGAAAC 57.264 29.630 16.69 11.84 0.00 2.78
53 54 7.684062 AAACTGAACAATTTGATCTGAAACG 57.316 32.000 16.69 0.00 0.00 3.60
54 55 6.618287 ACTGAACAATTTGATCTGAAACGA 57.382 33.333 16.69 0.00 0.00 3.85
55 56 7.206981 ACTGAACAATTTGATCTGAAACGAT 57.793 32.000 16.69 0.00 0.00 3.73
56 57 8.322906 ACTGAACAATTTGATCTGAAACGATA 57.677 30.769 16.69 0.00 0.00 2.92
57 58 8.230486 ACTGAACAATTTGATCTGAAACGATAC 58.770 33.333 16.69 0.00 0.00 2.24
58 59 8.093659 TGAACAATTTGATCTGAAACGATACA 57.906 30.769 2.79 0.00 0.00 2.29
59 60 8.229811 TGAACAATTTGATCTGAAACGATACAG 58.770 33.333 2.79 0.00 35.72 2.74
60 61 7.672983 ACAATTTGATCTGAAACGATACAGT 57.327 32.000 2.79 0.00 35.84 3.55
61 62 8.771920 ACAATTTGATCTGAAACGATACAGTA 57.228 30.769 2.79 0.00 35.84 2.74
62 63 8.656849 ACAATTTGATCTGAAACGATACAGTAC 58.343 33.333 2.79 0.00 35.84 2.73
63 64 8.873830 CAATTTGATCTGAAACGATACAGTACT 58.126 33.333 0.00 0.00 35.84 2.73
64 65 7.812309 TTTGATCTGAAACGATACAGTACTG 57.188 36.000 21.44 21.44 35.84 2.74
75 76 8.792830 AACGATACAGTACTGGTACTAGTTAA 57.207 34.615 26.12 0.00 43.98 2.01
94 95 2.150397 ACAGTGGAGCAAGAACGTAC 57.850 50.000 0.00 0.00 0.00 3.67
95 96 1.687123 ACAGTGGAGCAAGAACGTACT 59.313 47.619 0.00 0.00 0.00 2.73
96 97 2.061773 CAGTGGAGCAAGAACGTACTG 58.938 52.381 0.00 0.00 0.00 2.74
97 98 1.687123 AGTGGAGCAAGAACGTACTGT 59.313 47.619 0.00 0.00 0.00 3.55
98 99 2.889045 AGTGGAGCAAGAACGTACTGTA 59.111 45.455 0.00 0.00 0.00 2.74
105 106 4.082408 AGCAAGAACGTACTGTATGTAGCA 60.082 41.667 12.73 0.00 0.00 3.49
109 110 6.360844 AGAACGTACTGTATGTAGCAGTAG 57.639 41.667 12.73 3.86 46.25 2.57
110 111 4.548991 ACGTACTGTATGTAGCAGTAGC 57.451 45.455 10.83 0.00 46.25 3.58
144 145 8.747538 TCATACATCAAGTAGTACAGCTCTAA 57.252 34.615 2.52 0.00 35.85 2.10
146 147 6.835819 ACATCAAGTAGTACAGCTCTAACA 57.164 37.500 2.52 0.00 0.00 2.41
152 153 6.896021 AGTAGTACAGCTCTAACACAAGAA 57.104 37.500 2.52 0.00 0.00 2.52
153 154 7.286215 AGTAGTACAGCTCTAACACAAGAAA 57.714 36.000 2.52 0.00 0.00 2.52
160 161 5.525378 CAGCTCTAACACAAGAAAACAGTCT 59.475 40.000 0.00 0.00 0.00 3.24
188 189 1.650314 CCATTCGCATCTGCACTGCA 61.650 55.000 14.90 3.11 42.21 4.41
189 190 0.380733 CATTCGCATCTGCACTGCAT 59.619 50.000 14.90 1.63 42.21 3.96
230 231 0.250901 GAGCTTCAGAGGCAACCCAA 60.251 55.000 7.36 0.00 37.17 4.12
232 233 0.315251 GCTTCAGAGGCAACCCAAAC 59.685 55.000 0.00 0.00 37.17 2.93
236 237 0.890683 CAGAGGCAACCCAAACATCC 59.109 55.000 0.00 0.00 37.17 3.51
252 253 4.882671 ACATCCAATCAAATACGCAGAC 57.117 40.909 0.00 0.00 0.00 3.51
259 260 4.900635 ATCAAATACGCAGACCATTTCC 57.099 40.909 0.00 0.00 0.00 3.13
262 263 4.155826 TCAAATACGCAGACCATTTCCAAG 59.844 41.667 0.00 0.00 0.00 3.61
276 277 1.609208 TCCAAGTTTCAGCCTCAAGC 58.391 50.000 0.00 0.00 44.25 4.01
321 322 4.451150 GGCGATCCACCGTCAGCA 62.451 66.667 0.00 0.00 33.83 4.41
377 378 1.404035 AGTTGACCGGAAGCACAAAAC 59.596 47.619 9.46 0.40 0.00 2.43
407 408 1.267365 CTTCAGAGAAAGCGAGCTCG 58.733 55.000 31.37 31.37 43.27 5.03
410 411 0.109086 CAGAGAAAGCGAGCTCGGAA 60.109 55.000 35.10 0.00 40.23 4.30
421 422 0.179108 AGCTCGGAATACCTCGCAAC 60.179 55.000 0.00 0.00 33.54 4.17
541 542 2.407340 ACAGAGACCTCCTCCTGTTT 57.593 50.000 0.00 0.00 42.97 2.83
613 614 2.510238 CAAAGCGAGCCTCTCCGG 60.510 66.667 0.00 0.00 0.00 5.14
625 626 0.539051 CTCTCCGGAGCTGATGGTTT 59.461 55.000 27.39 0.00 32.43 3.27
699 708 2.812619 GGAGGGGAGCCGGATCTTG 61.813 68.421 20.86 0.00 0.00 3.02
751 848 1.516423 GGAGACGAAGGTACTGGCC 59.484 63.158 0.00 0.00 40.86 5.36
752 849 1.139095 GAGACGAAGGTACTGGCCG 59.861 63.158 0.00 0.00 40.86 6.13
753 850 2.183555 GACGAAGGTACTGGCCGG 59.816 66.667 11.02 11.02 40.86 6.13
754 851 2.283388 ACGAAGGTACTGGCCGGA 60.283 61.111 21.41 0.00 40.86 5.14
755 852 1.673808 GACGAAGGTACTGGCCGGAT 61.674 60.000 21.41 5.13 40.86 4.18
758 855 1.380785 AAGGTACTGGCCGGATCGA 60.381 57.895 21.41 0.00 40.86 3.59
790 887 1.691976 CCGTATGGGCCAGTTAGATCA 59.308 52.381 13.78 0.00 0.00 2.92
805 902 3.477210 AGATCATTTCCCGCCTCTTAC 57.523 47.619 0.00 0.00 0.00 2.34
868 970 1.827399 CGTGGGCCTGTAGTTCCAGT 61.827 60.000 4.53 0.00 0.00 4.00
871 973 1.299976 GGCCTGTAGTTCCAGTGGG 59.700 63.158 9.92 0.00 0.00 4.61
872 974 1.299976 GCCTGTAGTTCCAGTGGGG 59.700 63.158 9.92 1.27 38.37 4.96
873 975 1.198759 GCCTGTAGTTCCAGTGGGGA 61.199 60.000 9.92 0.00 46.61 4.81
888 990 3.157881 GTGGGGAAGAAGAAGAAAAGGG 58.842 50.000 0.00 0.00 0.00 3.95
889 991 3.060611 TGGGGAAGAAGAAGAAAAGGGA 58.939 45.455 0.00 0.00 0.00 4.20
904 1006 2.559785 GGGAGTCGTACTTCCGTGA 58.440 57.895 0.00 0.00 33.40 4.35
913 1015 0.947180 TACTTCCGTGAACGCTTGCC 60.947 55.000 0.00 0.00 38.18 4.52
950 1059 2.680352 ACATGGTCGTCTCGGGCT 60.680 61.111 0.00 0.00 0.00 5.19
952 1061 4.148825 ATGGTCGTCTCGGGCTGC 62.149 66.667 0.00 0.00 0.00 5.25
957 1066 4.421479 CGTCTCGGGCTGCTCGTT 62.421 66.667 22.59 0.00 0.00 3.85
1001 1110 3.771160 GTCGTCGCAGGTCCCCAT 61.771 66.667 0.00 0.00 0.00 4.00
1002 1111 3.770040 TCGTCGCAGGTCCCCATG 61.770 66.667 0.00 0.00 0.00 3.66
1101 1763 1.577328 CGGCCGAAAACACTGAGCAT 61.577 55.000 24.07 0.00 0.00 3.79
1102 1764 1.448985 GGCCGAAAACACTGAGCATA 58.551 50.000 0.00 0.00 0.00 3.14
1103 1765 1.810151 GGCCGAAAACACTGAGCATAA 59.190 47.619 0.00 0.00 0.00 1.90
1104 1766 2.227865 GGCCGAAAACACTGAGCATAAA 59.772 45.455 0.00 0.00 0.00 1.40
1105 1767 3.492313 GCCGAAAACACTGAGCATAAAG 58.508 45.455 0.00 0.00 0.00 1.85
1106 1768 3.188460 GCCGAAAACACTGAGCATAAAGA 59.812 43.478 0.00 0.00 0.00 2.52
1316 1987 3.795041 CCCTGCTCCTGCCCTCTG 61.795 72.222 0.00 0.00 38.71 3.35
1361 2032 5.977129 GTGTTCTGTTTTCATTTTCGGATGT 59.023 36.000 0.00 0.00 0.00 3.06
1425 2096 2.125552 CCGCTGCAGTGATCGGAA 60.126 61.111 28.54 0.00 44.23 4.30
1437 2108 1.075226 ATCGGAAGCCAGAGCCCTA 60.075 57.895 0.00 0.00 41.25 3.53
1440 2111 0.755698 CGGAAGCCAGAGCCCTACTA 60.756 60.000 0.00 0.00 41.25 1.82
1442 2113 2.050918 GGAAGCCAGAGCCCTACTATT 58.949 52.381 0.00 0.00 41.25 1.73
1443 2114 2.439880 GGAAGCCAGAGCCCTACTATTT 59.560 50.000 0.00 0.00 41.25 1.40
1446 2117 2.439880 AGCCAGAGCCCTACTATTTTCC 59.560 50.000 0.00 0.00 41.25 3.13
1448 2119 2.106684 CCAGAGCCCTACTATTTTCCCC 59.893 54.545 0.00 0.00 0.00 4.81
1471 2142 0.871722 TTTGATCGGTTGCGTTCCTG 59.128 50.000 0.00 0.00 0.00 3.86
1508 2179 8.058915 CGATTTCTCCTGTTTTAATCTCGATTC 58.941 37.037 0.00 0.00 32.50 2.52
1532 2203 0.953960 CCGTGCGAGCCTTTAAACCT 60.954 55.000 0.00 0.00 0.00 3.50
1535 2206 1.134694 GCGAGCCTTTAAACCTGCG 59.865 57.895 0.00 0.00 0.00 5.18
1537 2208 0.165944 CGAGCCTTTAAACCTGCGTG 59.834 55.000 0.00 0.00 0.00 5.34
1579 2250 1.733360 TGGCGCCGTTTTAATCACTAC 59.267 47.619 23.90 0.00 0.00 2.73
1580 2251 1.733360 GGCGCCGTTTTAATCACTACA 59.267 47.619 12.58 0.00 0.00 2.74
1581 2252 2.222953 GGCGCCGTTTTAATCACTACAG 60.223 50.000 12.58 0.00 0.00 2.74
1582 2253 2.414138 GCGCCGTTTTAATCACTACAGT 59.586 45.455 0.00 0.00 0.00 3.55
1583 2254 3.613737 GCGCCGTTTTAATCACTACAGTA 59.386 43.478 0.00 0.00 0.00 2.74
1598 2269 9.886132 ATCACTACAGTATCTTTTACCGATTTT 57.114 29.630 0.00 0.00 0.00 1.82
1599 2270 9.146984 TCACTACAGTATCTTTTACCGATTTTG 57.853 33.333 0.00 0.00 0.00 2.44
1604 2275 8.943002 ACAGTATCTTTTACCGATTTTGTTAGG 58.057 33.333 0.00 0.00 0.00 2.69
1629 2312 2.433446 CCCTGTTCTGCACCTGCT 59.567 61.111 0.00 0.00 42.66 4.24
1665 2348 6.757947 GCAATTTGCCATAATATGTTGTCTGT 59.242 34.615 10.34 0.00 37.42 3.41
1713 2396 4.154015 TGGAGTGCTGAAAATACATCAACG 59.846 41.667 0.00 0.00 0.00 4.10
1714 2397 4.154195 GGAGTGCTGAAAATACATCAACGT 59.846 41.667 0.00 0.00 0.00 3.99
1715 2398 5.334879 GGAGTGCTGAAAATACATCAACGTT 60.335 40.000 0.00 0.00 0.00 3.99
1768 2451 2.930950 TCAACCTTGCAAGTTGTAGCT 58.069 42.857 26.54 0.00 44.02 3.32
1799 2482 2.099756 GCCTGAAGAGTTTGTTTGCAGT 59.900 45.455 0.00 0.00 0.00 4.40
1924 2609 5.630661 AGCACAGTAGAGTACTAAGTGTG 57.369 43.478 26.77 26.77 42.52 3.82
1937 2622 2.789409 AAGTGTGTCTCCCTAATGGC 57.211 50.000 0.00 0.00 0.00 4.40
2026 2711 5.163622 ACACTGATATGTTGTTGCTAATGCC 60.164 40.000 0.00 0.00 38.71 4.40
2128 2813 6.575083 AGACATCATTTCTTCGTATGTTCG 57.425 37.500 0.00 0.00 31.19 3.95
2162 2847 2.603892 GCCATGTATTCTGAGCATTGCG 60.604 50.000 2.38 0.00 0.00 4.85
2166 2851 5.390251 CCATGTATTCTGAGCATTGCGATAC 60.390 44.000 2.38 8.54 0.00 2.24
2285 2978 6.261603 TGTCTTCCATTATGCTTCATTGCTAG 59.738 38.462 0.00 0.00 0.00 3.42
2286 2979 6.261826 GTCTTCCATTATGCTTCATTGCTAGT 59.738 38.462 0.00 0.00 0.00 2.57
2287 2980 6.830324 TCTTCCATTATGCTTCATTGCTAGTT 59.170 34.615 0.00 0.00 0.00 2.24
2288 2981 7.340232 TCTTCCATTATGCTTCATTGCTAGTTT 59.660 33.333 0.00 0.00 0.00 2.66
2289 2982 6.798482 TCCATTATGCTTCATTGCTAGTTTG 58.202 36.000 0.00 0.00 0.00 2.93
2290 2983 5.461078 CCATTATGCTTCATTGCTAGTTTGC 59.539 40.000 0.00 0.00 0.00 3.68
2291 2984 5.902613 TTATGCTTCATTGCTAGTTTGCT 57.097 34.783 0.00 0.00 0.00 3.91
2292 2985 7.420002 CATTATGCTTCATTGCTAGTTTGCTA 58.580 34.615 0.00 0.00 0.00 3.49
2373 3084 4.525487 TCCAACTATGTTCCACTCGTACTT 59.475 41.667 0.00 0.00 0.00 2.24
2374 3085 4.863131 CCAACTATGTTCCACTCGTACTTC 59.137 45.833 0.00 0.00 0.00 3.01
2375 3086 5.336531 CCAACTATGTTCCACTCGTACTTCT 60.337 44.000 0.00 0.00 0.00 2.85
2448 3164 2.717639 AGTCAAAGTCAAGTGGCACT 57.282 45.000 15.88 15.88 0.00 4.40
2566 3282 1.522580 GGCCGCTCTGAAGGTCATC 60.523 63.158 0.00 0.00 31.24 2.92
2589 3305 4.215827 CGAGAAGTACCTGTTGTGTCTACT 59.784 45.833 0.00 0.00 0.00 2.57
2660 3376 5.724854 AGGTACACATTCCCATACAGTTACT 59.275 40.000 0.00 0.00 0.00 2.24
2702 3418 8.031277 GGAAGCTCTTTCATGTTGATTATGTTT 58.969 33.333 0.00 0.00 37.54 2.83
2705 3421 8.242053 AGCTCTTTCATGTTGATTATGTTTCAG 58.758 33.333 0.00 0.00 0.00 3.02
2718 3434 8.243426 TGATTATGTTTCAGTTTGTAATCTGCC 58.757 33.333 0.00 0.00 32.53 4.85
2733 3449 4.584638 ATCTGCCTGGTACCACAAAATA 57.415 40.909 11.60 0.00 0.00 1.40
2816 3558 7.927305 ATTTTGTTTTGTAAAATTGGCATGC 57.073 28.000 9.90 9.90 34.93 4.06
2817 3559 6.690194 TTTGTTTTGTAAAATTGGCATGCT 57.310 29.167 18.92 0.00 0.00 3.79
2841 3583 1.021202 TTCTTTGCAGGGACGTGTTG 58.979 50.000 0.00 0.00 0.00 3.33
2849 3591 1.343465 CAGGGACGTGTTGTAGAGGTT 59.657 52.381 0.00 0.00 0.00 3.50
2959 3701 8.811378 CAAAACTTTGAATCTGACTTCCTTTTC 58.189 33.333 0.00 0.00 40.55 2.29
2963 3705 6.579666 TTGAATCTGACTTCCTTTTCATGG 57.420 37.500 0.00 0.00 0.00 3.66
2977 3719 5.754890 CCTTTTCATGGTCTGTTTTCCTTTG 59.245 40.000 0.00 0.00 0.00 2.77
3031 3773 0.179018 GTGGCACCCTTCTGTGTTCT 60.179 55.000 6.29 0.00 38.52 3.01
3052 3794 7.400339 TGTTCTCCTTCAGTCTATGGAAGTAAT 59.600 37.037 0.00 0.00 39.04 1.89
3059 3801 7.437713 TCAGTCTATGGAAGTAATTGTGGAT 57.562 36.000 0.00 0.00 0.00 3.41
3072 3814 7.895759 AGTAATTGTGGATTTTGTAGCATGTT 58.104 30.769 0.00 0.00 0.00 2.71
3089 3831 4.679639 GCATGTTCGTATAGGACTGACCAA 60.680 45.833 0.00 0.00 42.04 3.67
3123 3866 9.830975 TCAGCAATATTATTTACTCAACTGCTA 57.169 29.630 0.00 0.00 34.81 3.49
3172 3915 2.151202 TGCTAACCTGCAACTGCTTAC 58.849 47.619 2.95 0.00 40.29 2.34
3185 3928 3.650139 ACTGCTTACTAACGTGAACCTG 58.350 45.455 0.00 0.00 0.00 4.00
3191 3934 5.288952 GCTTACTAACGTGAACCTGAAGATC 59.711 44.000 0.00 0.00 0.00 2.75
3237 3980 0.662619 TGTTGCTTCTCAAACCTGCG 59.337 50.000 0.00 0.00 36.26 5.18
3258 4001 8.024285 CCTGCGTATTAAACCAAAAACTATTCA 58.976 33.333 0.00 0.00 0.00 2.57
3281 4024 5.852282 AACAGTTGGCTAAAAGTTGTCAT 57.148 34.783 1.19 0.00 0.00 3.06
3463 4208 9.962783 AGTACGTAATATGAAGATAAGTCAACC 57.037 33.333 0.00 0.00 0.00 3.77
3465 4210 8.644318 ACGTAATATGAAGATAAGTCAACCAC 57.356 34.615 0.00 0.00 0.00 4.16
3466 4211 8.255206 ACGTAATATGAAGATAAGTCAACCACA 58.745 33.333 0.00 0.00 0.00 4.17
3477 4222 3.214328 AGTCAACCACAAGTCCATGAAC 58.786 45.455 0.00 0.00 0.00 3.18
3540 4285 9.522804 TTATAAGCCATAAATTTTTACTTGGCG 57.477 29.630 16.35 0.00 46.16 5.69
3542 4287 4.081697 AGCCATAAATTTTTACTTGGCGCT 60.082 37.500 7.64 0.00 46.16 5.92
3600 4346 6.102897 AGTGCACTAGGTTTATAGGCATAG 57.897 41.667 20.16 0.00 34.05 2.23
3613 4359 1.282157 AGGCATAGGTCCTGTGGTTTC 59.718 52.381 16.65 0.67 31.53 2.78
3621 4367 2.030274 GGTCCTGTGGTTTCCGAAATTG 60.030 50.000 0.00 0.00 0.00 2.32
3634 4381 9.338291 GGTTTCCGAAATTGAACTTAACTATTC 57.662 33.333 0.00 0.00 0.00 1.75
3657 4404 9.791801 ATTCTTATATTTTTGGTTTGCCTTGTT 57.208 25.926 0.00 0.00 35.27 2.83
3739 4486 4.397103 TCGATTGGTGTCGACACTAGTAAT 59.603 41.667 39.01 31.26 44.87 1.89
3850 4597 3.035363 TGACAGTGTAAGACCTTGACCA 58.965 45.455 0.00 0.00 0.00 4.02
3851 4598 3.646162 TGACAGTGTAAGACCTTGACCAT 59.354 43.478 0.00 0.00 0.00 3.55
3852 4599 4.246458 GACAGTGTAAGACCTTGACCATC 58.754 47.826 0.00 0.00 0.00 3.51
3853 4600 3.904339 ACAGTGTAAGACCTTGACCATCT 59.096 43.478 0.00 0.00 0.00 2.90
3854 4601 5.084519 ACAGTGTAAGACCTTGACCATCTA 58.915 41.667 0.00 0.00 0.00 1.98
3918 4665 9.678260 ATTAGTTTCTGCTTAATCATGACTTCT 57.322 29.630 0.00 0.00 0.00 2.85
3919 4666 7.608308 AGTTTCTGCTTAATCATGACTTCTC 57.392 36.000 0.00 0.00 0.00 2.87
3923 4670 6.810911 TCTGCTTAATCATGACTTCTCTACC 58.189 40.000 0.00 0.00 0.00 3.18
3946 4693 4.916831 CGCTCAAATTAGTGCATTGTCAAA 59.083 37.500 0.00 0.00 0.00 2.69
3996 4743 9.601810 AGTCTTAATAACCAAAATTCCTCCTTT 57.398 29.630 0.00 0.00 0.00 3.11
4172 4920 4.286297 TCACTATCCCAGACAGTTTTGG 57.714 45.455 0.00 0.00 0.00 3.28
4232 4981 9.901172 TTCTTTGAGTCTTTTACTTCTAGGTTT 57.099 29.630 0.00 0.00 39.07 3.27
4301 5108 9.247861 AGTCAATAAGTCTTGATAGCCATTTTT 57.752 29.630 0.00 0.00 37.47 1.94
4342 5149 3.208747 TCACCCAGAAACTTCCAGAAC 57.791 47.619 0.00 0.00 0.00 3.01
4344 5151 1.202770 ACCCAGAAACTTCCAGAACGG 60.203 52.381 0.00 0.00 0.00 4.44
4345 5152 0.875059 CCAGAAACTTCCAGAACGGC 59.125 55.000 0.00 0.00 33.14 5.68
4348 5155 2.160417 CAGAAACTTCCAGAACGGCATC 59.840 50.000 0.00 0.00 33.14 3.91
4369 5176 3.707611 TCCCGCTAAAGCTAGGAAATGTA 59.292 43.478 7.84 0.00 37.93 2.29
4373 5180 6.039382 CCCGCTAAAGCTAGGAAATGTATTTT 59.961 38.462 0.00 0.00 39.32 1.82
4465 5406 5.512942 TGATCCTCTGTTTCCCATGTTTA 57.487 39.130 0.00 0.00 0.00 2.01
4466 5407 5.886609 TGATCCTCTGTTTCCCATGTTTAA 58.113 37.500 0.00 0.00 0.00 1.52
4487 5428 3.019564 ACATTGCAATAACCTCTCCAGC 58.980 45.455 12.53 0.00 0.00 4.85
4497 5438 0.391793 CCTCTCCAGCCTTTTCGTCC 60.392 60.000 0.00 0.00 0.00 4.79
4498 5439 0.321671 CTCTCCAGCCTTTTCGTCCA 59.678 55.000 0.00 0.00 0.00 4.02
4502 5443 1.515521 CCAGCCTTTTCGTCCACACC 61.516 60.000 0.00 0.00 0.00 4.16
4511 5452 5.334879 CCTTTTCGTCCACACCTATTTTGAG 60.335 44.000 0.00 0.00 0.00 3.02
4588 5529 0.178816 TTGGGGGAGGATTTGGAGGA 60.179 55.000 0.00 0.00 0.00 3.71
4594 5535 1.065126 GGAGGATTTGGAGGACCACAG 60.065 57.143 0.00 0.00 46.80 3.66
4642 5583 3.775661 AAATTTTATGCCTCGGTTCGG 57.224 42.857 0.00 0.00 0.00 4.30
4792 5734 4.392940 ACTGACTTCTTTTGAGGGTCATG 58.607 43.478 0.00 0.00 39.89 3.07
4799 5741 1.896220 TTTGAGGGTCATGTCTGCAC 58.104 50.000 0.00 0.00 0.00 4.57
4823 5765 7.746475 CACGAGACATTCTTTAAAATTGTCTCC 59.254 37.037 27.96 19.04 44.42 3.71
4946 6119 5.131142 CCTTACAGATTAGGTTCCTCATGGT 59.869 44.000 0.00 0.00 34.23 3.55
4957 6130 4.141620 GGTTCCTCATGGTATGTGAGATGT 60.142 45.833 4.79 0.00 44.57 3.06
5015 6188 5.649395 ACAATCTCGTGGAAATGATGACAAT 59.351 36.000 0.00 0.00 0.00 2.71
5016 6189 5.746307 ATCTCGTGGAAATGATGACAATG 57.254 39.130 0.00 0.00 0.00 2.82
5017 6190 4.831107 TCTCGTGGAAATGATGACAATGA 58.169 39.130 0.00 0.00 0.00 2.57
5018 6191 5.244755 TCTCGTGGAAATGATGACAATGAA 58.755 37.500 0.00 0.00 0.00 2.57
5019 6192 5.882000 TCTCGTGGAAATGATGACAATGAAT 59.118 36.000 0.00 0.00 0.00 2.57
5020 6193 6.375174 TCTCGTGGAAATGATGACAATGAATT 59.625 34.615 0.00 0.00 0.00 2.17
5021 6194 6.923012 TCGTGGAAATGATGACAATGAATTT 58.077 32.000 0.00 0.00 0.00 1.82
5022 6195 7.377398 TCGTGGAAATGATGACAATGAATTTT 58.623 30.769 0.00 0.00 0.00 1.82
5023 6196 7.328982 TCGTGGAAATGATGACAATGAATTTTG 59.671 33.333 0.00 0.00 0.00 2.44
5024 6197 7.328982 CGTGGAAATGATGACAATGAATTTTGA 59.671 33.333 0.00 0.00 0.00 2.69
5025 6198 8.991026 GTGGAAATGATGACAATGAATTTTGAA 58.009 29.630 0.00 0.00 0.00 2.69
5026 6199 8.991026 TGGAAATGATGACAATGAATTTTGAAC 58.009 29.630 0.00 0.00 0.00 3.18
5027 6200 8.445493 GGAAATGATGACAATGAATTTTGAACC 58.555 33.333 0.00 0.00 0.00 3.62
5028 6201 8.905660 AAATGATGACAATGAATTTTGAACCA 57.094 26.923 0.00 0.00 0.00 3.67
5029 6202 9.509956 AAATGATGACAATGAATTTTGAACCAT 57.490 25.926 0.00 0.00 0.00 3.55
5030 6203 9.509956 AATGATGACAATGAATTTTGAACCATT 57.490 25.926 0.00 0.00 0.00 3.16
5037 6210 9.352784 ACAATGAATTTTGAACCATTATACACG 57.647 29.630 0.00 0.00 0.00 4.49
5038 6211 7.985634 ATGAATTTTGAACCATTATACACGC 57.014 32.000 0.00 0.00 0.00 5.34
5039 6212 7.151999 TGAATTTTGAACCATTATACACGCT 57.848 32.000 0.00 0.00 0.00 5.07
5040 6213 7.026562 TGAATTTTGAACCATTATACACGCTG 58.973 34.615 0.00 0.00 0.00 5.18
5041 6214 4.349663 TTTGAACCATTATACACGCTGC 57.650 40.909 0.00 0.00 0.00 5.25
5042 6215 3.260475 TGAACCATTATACACGCTGCT 57.740 42.857 0.00 0.00 0.00 4.24
5043 6216 3.605634 TGAACCATTATACACGCTGCTT 58.394 40.909 0.00 0.00 0.00 3.91
5044 6217 4.760878 TGAACCATTATACACGCTGCTTA 58.239 39.130 0.00 0.00 0.00 3.09
5045 6218 5.364778 TGAACCATTATACACGCTGCTTAT 58.635 37.500 0.00 0.00 0.00 1.73
5046 6219 5.465390 TGAACCATTATACACGCTGCTTATC 59.535 40.000 0.00 0.00 0.00 1.75
5047 6220 5.215252 ACCATTATACACGCTGCTTATCT 57.785 39.130 0.00 0.00 0.00 1.98
5048 6221 6.340962 ACCATTATACACGCTGCTTATCTA 57.659 37.500 0.00 0.00 0.00 1.98
5049 6222 6.755206 ACCATTATACACGCTGCTTATCTAA 58.245 36.000 0.00 0.00 0.00 2.10
5050 6223 6.645415 ACCATTATACACGCTGCTTATCTAAC 59.355 38.462 0.00 0.00 0.00 2.34
5051 6224 6.645003 CCATTATACACGCTGCTTATCTAACA 59.355 38.462 0.00 0.00 0.00 2.41
5052 6225 7.170828 CCATTATACACGCTGCTTATCTAACAA 59.829 37.037 0.00 0.00 0.00 2.83
5053 6226 8.712363 CATTATACACGCTGCTTATCTAACAAT 58.288 33.333 0.00 0.00 0.00 2.71
5054 6227 6.771188 ATACACGCTGCTTATCTAACAATC 57.229 37.500 0.00 0.00 0.00 2.67
5055 6228 4.759782 ACACGCTGCTTATCTAACAATCT 58.240 39.130 0.00 0.00 0.00 2.40
5056 6229 4.806247 ACACGCTGCTTATCTAACAATCTC 59.194 41.667 0.00 0.00 0.00 2.75
5057 6230 4.805719 CACGCTGCTTATCTAACAATCTCA 59.194 41.667 0.00 0.00 0.00 3.27
5058 6231 5.464722 CACGCTGCTTATCTAACAATCTCAT 59.535 40.000 0.00 0.00 0.00 2.90
5059 6232 5.464722 ACGCTGCTTATCTAACAATCTCATG 59.535 40.000 0.00 0.00 0.00 3.07
5060 6233 5.107182 CGCTGCTTATCTAACAATCTCATGG 60.107 44.000 0.00 0.00 0.00 3.66
5061 6234 5.994054 GCTGCTTATCTAACAATCTCATGGA 59.006 40.000 0.00 0.00 0.00 3.41
5062 6235 6.484643 GCTGCTTATCTAACAATCTCATGGAA 59.515 38.462 0.00 0.00 0.00 3.53
5063 6236 7.012704 GCTGCTTATCTAACAATCTCATGGAAA 59.987 37.037 0.00 0.00 0.00 3.13
5064 6237 8.985315 TGCTTATCTAACAATCTCATGGAAAT 57.015 30.769 0.00 0.00 0.00 2.17
5065 6238 8.843262 TGCTTATCTAACAATCTCATGGAAATG 58.157 33.333 0.00 0.00 0.00 2.32
5066 6239 9.060347 GCTTATCTAACAATCTCATGGAAATGA 57.940 33.333 0.00 0.00 0.00 2.57
5069 6242 7.812690 TCTAACAATCTCATGGAAATGATGG 57.187 36.000 0.00 0.00 0.00 3.51
5070 6243 4.931661 ACAATCTCATGGAAATGATGGC 57.068 40.909 0.00 0.00 0.00 4.40
5071 6244 4.283337 ACAATCTCATGGAAATGATGGCA 58.717 39.130 0.00 0.00 0.00 4.92
5072 6245 4.098960 ACAATCTCATGGAAATGATGGCAC 59.901 41.667 0.00 0.00 0.00 5.01
5215 6389 2.012673 CAGAGCTTTTCGATCTTGGGG 58.987 52.381 0.00 0.00 35.90 4.96
5227 6401 3.421844 GATCTTGGGGTAAAGCACAAGT 58.578 45.455 20.24 10.35 40.74 3.16
5292 6466 3.019564 GCAGTTCCATGGTAAAGATGCT 58.980 45.455 12.58 0.00 0.00 3.79
5370 6544 5.526846 GCTAAGGAGATTGATCCAAACTGAG 59.473 44.000 0.00 0.00 42.26 3.35
5552 6729 0.182537 TGGACTTGGGACCTTGTGTG 59.817 55.000 0.00 0.00 0.00 3.82
5555 6732 0.179018 ACTTGGGACCTTGTGTGCTC 60.179 55.000 0.00 0.00 35.29 4.26
5735 6929 3.446442 AGGTCCAGCAACATTCTTGAT 57.554 42.857 0.00 0.00 0.00 2.57
5761 6956 1.706287 GCTAACTTGCCGCTGCTACC 61.706 60.000 0.70 0.00 38.71 3.18
5788 6983 4.525024 AGAATTTGATTCTCCTGCTCCAG 58.475 43.478 0.00 0.00 46.17 3.86
5789 6984 4.226846 AGAATTTGATTCTCCTGCTCCAGA 59.773 41.667 0.00 0.00 46.17 3.86
5790 6985 4.581309 ATTTGATTCTCCTGCTCCAGAA 57.419 40.909 0.00 0.00 32.44 3.02
5791 6986 4.371624 TTTGATTCTCCTGCTCCAGAAA 57.628 40.909 0.00 0.00 32.40 2.52
5792 6987 3.340814 TGATTCTCCTGCTCCAGAAAC 57.659 47.619 0.00 0.00 32.40 2.78
5793 6988 2.639347 TGATTCTCCTGCTCCAGAAACA 59.361 45.455 0.00 0.00 32.40 2.83
5794 6989 3.265221 TGATTCTCCTGCTCCAGAAACAT 59.735 43.478 0.00 0.00 32.40 2.71
5795 6990 3.795688 TTCTCCTGCTCCAGAAACATT 57.204 42.857 0.00 0.00 32.44 2.71
5796 6991 3.340814 TCTCCTGCTCCAGAAACATTC 57.659 47.619 0.00 0.00 32.44 2.67
5798 6993 3.055530 TCTCCTGCTCCAGAAACATTCTC 60.056 47.826 0.00 0.00 38.11 2.87
5802 6997 1.339151 GCTCCAGAAACATTCTCCGGT 60.339 52.381 0.00 0.00 38.11 5.28
5821 7017 2.028020 GGTCTTGCCTGCTAGTAGTTGT 60.028 50.000 7.10 0.00 0.00 3.32
5837 7033 0.459489 TTGTTTTGAGTGGCAGCACC 59.541 50.000 0.00 0.00 39.84 5.01
5862 7058 5.923204 AGATGCAAATTGTTTTGGGTGTTA 58.077 33.333 0.00 0.00 42.09 2.41
5863 7059 6.352516 AGATGCAAATTGTTTTGGGTGTTAA 58.647 32.000 0.00 0.00 42.09 2.01
5865 7061 6.817765 TGCAAATTGTTTTGGGTGTTAAAA 57.182 29.167 0.00 0.00 42.09 1.52
5868 7064 6.198029 GCAAATTGTTTTGGGTGTTAAAATGC 59.802 34.615 0.00 0.00 42.09 3.56
5869 7065 7.479150 CAAATTGTTTTGGGTGTTAAAATGCT 58.521 30.769 0.00 0.00 38.85 3.79
5871 7067 5.606348 TGTTTTGGGTGTTAAAATGCTCT 57.394 34.783 0.00 0.00 30.62 4.09
5872 7068 6.716934 TGTTTTGGGTGTTAAAATGCTCTA 57.283 33.333 0.00 0.00 30.62 2.43
5873 7069 6.744112 TGTTTTGGGTGTTAAAATGCTCTAG 58.256 36.000 0.00 0.00 30.62 2.43
5874 7070 5.385509 TTTGGGTGTTAAAATGCTCTAGC 57.614 39.130 0.00 0.00 42.50 3.42
5906 7161 2.260844 TCTGCCACTTTTCCTGTCAG 57.739 50.000 0.00 0.00 0.00 3.51
5933 7188 5.413309 TTTCTTTCAGAGATCTCCAGGAC 57.587 43.478 19.30 0.00 33.49 3.85
6001 7258 0.813821 GACAATGGCAGGGCTTTCTC 59.186 55.000 0.00 0.00 0.00 2.87
6003 7260 1.379044 AATGGCAGGGCTTTCTCCG 60.379 57.895 0.00 0.00 0.00 4.63
6020 7277 1.678598 CCGGGAGTTATGGCCACGTA 61.679 60.000 8.16 0.00 0.00 3.57
6021 7278 0.529119 CGGGAGTTATGGCCACGTAC 60.529 60.000 8.16 6.59 0.00 3.67
6045 7302 3.119388 CGTCAAGGCATCCAATGATTTGT 60.119 43.478 0.00 0.00 31.40 2.83
6110 7368 1.656587 AGCAGGTGTACTTCATGGGA 58.343 50.000 0.00 0.00 0.00 4.37
6211 7482 1.388547 TCGGCCATTGGCTAACAATC 58.611 50.000 26.15 7.63 46.67 2.67
6243 7519 6.387465 CAAGTCAAACGACTACTCTCCAATA 58.613 40.000 0.00 0.00 43.08 1.90
6249 7525 7.544566 TCAAACGACTACTCTCCAATAAATGTC 59.455 37.037 0.00 0.00 0.00 3.06
6308 7584 0.384725 CAAGTGCTTTCCGTTGAGCG 60.385 55.000 0.00 0.00 41.75 5.03
6433 7714 1.407979 GCTCCCTTGAATGAATGCCAG 59.592 52.381 0.00 0.00 0.00 4.85
6449 7733 1.614317 GCCAGCACTAATTGACACCCT 60.614 52.381 0.00 0.00 0.00 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 9.734620 CAGATCAAATTGTTCAGTTTACTTGAA 57.265 29.630 6.79 0.00 0.00 2.69
23 24 9.119418 TCAGATCAAATTGTTCAGTTTACTTGA 57.881 29.630 6.79 0.00 0.00 3.02
24 25 9.734620 TTCAGATCAAATTGTTCAGTTTACTTG 57.265 29.630 6.79 0.00 0.00 3.16
26 27 9.736023 GTTTCAGATCAAATTGTTCAGTTTACT 57.264 29.630 6.79 0.00 0.00 2.24
27 28 8.682016 CGTTTCAGATCAAATTGTTCAGTTTAC 58.318 33.333 6.79 0.00 0.00 2.01
28 29 8.616942 TCGTTTCAGATCAAATTGTTCAGTTTA 58.383 29.630 6.79 0.00 0.00 2.01
29 30 7.479980 TCGTTTCAGATCAAATTGTTCAGTTT 58.520 30.769 6.79 0.00 0.00 2.66
30 31 7.026631 TCGTTTCAGATCAAATTGTTCAGTT 57.973 32.000 6.79 0.00 0.00 3.16
31 32 6.618287 TCGTTTCAGATCAAATTGTTCAGT 57.382 33.333 6.79 0.00 0.00 3.41
32 33 8.229811 TGTATCGTTTCAGATCAAATTGTTCAG 58.770 33.333 6.79 0.00 32.39 3.02
33 34 8.093659 TGTATCGTTTCAGATCAAATTGTTCA 57.906 30.769 6.79 0.00 32.39 3.18
34 35 8.230486 ACTGTATCGTTTCAGATCAAATTGTTC 58.770 33.333 7.07 0.00 35.84 3.18
35 36 8.099364 ACTGTATCGTTTCAGATCAAATTGTT 57.901 30.769 7.07 0.00 35.84 2.83
36 37 7.672983 ACTGTATCGTTTCAGATCAAATTGT 57.327 32.000 7.07 0.00 35.84 2.71
37 38 8.873830 AGTACTGTATCGTTTCAGATCAAATTG 58.126 33.333 7.07 0.00 35.84 2.32
38 39 8.873830 CAGTACTGTATCGTTTCAGATCAAATT 58.126 33.333 15.06 0.00 35.84 1.82
39 40 7.492669 CCAGTACTGTATCGTTTCAGATCAAAT 59.507 37.037 21.18 0.00 35.84 2.32
40 41 6.811665 CCAGTACTGTATCGTTTCAGATCAAA 59.188 38.462 21.18 0.00 35.84 2.69
41 42 6.071560 ACCAGTACTGTATCGTTTCAGATCAA 60.072 38.462 21.18 0.00 35.84 2.57
42 43 5.417894 ACCAGTACTGTATCGTTTCAGATCA 59.582 40.000 21.18 0.00 35.84 2.92
43 44 5.892568 ACCAGTACTGTATCGTTTCAGATC 58.107 41.667 21.18 0.00 35.84 2.75
44 45 5.916661 ACCAGTACTGTATCGTTTCAGAT 57.083 39.130 21.18 0.00 35.84 2.90
45 46 5.942236 AGTACCAGTACTGTATCGTTTCAGA 59.058 40.000 21.18 0.00 44.11 3.27
46 47 6.192234 AGTACCAGTACTGTATCGTTTCAG 57.808 41.667 21.18 4.68 44.11 3.02
47 48 6.881065 ACTAGTACCAGTACTGTATCGTTTCA 59.119 38.462 21.18 0.00 45.25 2.69
48 49 7.313951 ACTAGTACCAGTACTGTATCGTTTC 57.686 40.000 21.18 8.76 45.25 2.78
49 50 7.693969 AACTAGTACCAGTACTGTATCGTTT 57.306 36.000 21.18 6.94 45.25 3.60
50 51 8.669243 GTTAACTAGTACCAGTACTGTATCGTT 58.331 37.037 21.18 16.39 45.25 3.85
51 52 7.824289 TGTTAACTAGTACCAGTACTGTATCGT 59.176 37.037 21.18 13.81 45.25 3.73
52 53 8.201554 TGTTAACTAGTACCAGTACTGTATCG 57.798 38.462 21.18 8.57 45.25 2.92
53 54 9.171877 ACTGTTAACTAGTACCAGTACTGTATC 57.828 37.037 21.18 10.50 45.25 2.24
54 55 8.954350 CACTGTTAACTAGTACCAGTACTGTAT 58.046 37.037 21.18 11.57 45.25 2.29
55 56 7.391554 CCACTGTTAACTAGTACCAGTACTGTA 59.608 40.741 21.18 10.87 45.25 2.74
56 57 6.208204 CCACTGTTAACTAGTACCAGTACTGT 59.792 42.308 21.18 11.81 45.25 3.55
57 58 6.432162 TCCACTGTTAACTAGTACCAGTACTG 59.568 42.308 16.34 16.34 45.25 2.74
59 60 6.624642 GCTCCACTGTTAACTAGTACCAGTAC 60.625 46.154 16.93 0.00 34.77 2.73
60 61 5.416952 GCTCCACTGTTAACTAGTACCAGTA 59.583 44.000 16.93 6.70 34.77 2.74
61 62 4.220163 GCTCCACTGTTAACTAGTACCAGT 59.780 45.833 13.40 13.40 36.85 4.00
62 63 4.219944 TGCTCCACTGTTAACTAGTACCAG 59.780 45.833 7.22 12.39 0.00 4.00
63 64 4.154176 TGCTCCACTGTTAACTAGTACCA 58.846 43.478 7.22 0.00 0.00 3.25
64 65 4.796038 TGCTCCACTGTTAACTAGTACC 57.204 45.455 7.22 0.00 0.00 3.34
75 76 1.687123 AGTACGTTCTTGCTCCACTGT 59.313 47.619 0.00 0.00 0.00 3.55
116 117 7.503902 AGAGCTGTACTACTTGATGTATGATGA 59.496 37.037 0.00 0.00 0.00 2.92
117 118 7.656412 AGAGCTGTACTACTTGATGTATGATG 58.344 38.462 0.00 0.00 0.00 3.07
118 119 7.831691 AGAGCTGTACTACTTGATGTATGAT 57.168 36.000 0.00 0.00 0.00 2.45
127 128 6.678878 TCTTGTGTTAGAGCTGTACTACTTG 58.321 40.000 0.00 0.00 0.00 3.16
131 132 7.494211 TGTTTTCTTGTGTTAGAGCTGTACTA 58.506 34.615 0.00 0.00 0.00 1.82
144 145 7.873505 GGACTAATCTAGACTGTTTTCTTGTGT 59.126 37.037 0.00 0.00 0.00 3.72
146 147 7.963532 TGGACTAATCTAGACTGTTTTCTTGT 58.036 34.615 0.00 0.00 0.00 3.16
152 153 6.043411 GCGAATGGACTAATCTAGACTGTTT 58.957 40.000 0.00 0.00 0.00 2.83
153 154 5.127194 TGCGAATGGACTAATCTAGACTGTT 59.873 40.000 0.00 0.00 0.00 3.16
160 161 4.039124 TGCAGATGCGAATGGACTAATCTA 59.961 41.667 0.00 0.00 45.83 1.98
209 210 1.682257 GGTTGCCTCTGAAGCTCCT 59.318 57.895 0.00 0.00 0.00 3.69
230 231 4.096382 GGTCTGCGTATTTGATTGGATGTT 59.904 41.667 0.00 0.00 0.00 2.71
232 233 3.627123 TGGTCTGCGTATTTGATTGGATG 59.373 43.478 0.00 0.00 0.00 3.51
236 237 5.036737 GGAAATGGTCTGCGTATTTGATTG 58.963 41.667 0.00 0.00 0.00 2.67
252 253 2.892852 TGAGGCTGAAACTTGGAAATGG 59.107 45.455 0.00 0.00 0.00 3.16
259 260 0.947244 ACGCTTGAGGCTGAAACTTG 59.053 50.000 0.00 0.00 39.13 3.16
262 263 1.666189 GGATACGCTTGAGGCTGAAAC 59.334 52.381 0.00 0.00 39.13 2.78
299 300 3.809374 GACGGTGGATCGCCCCATC 62.809 68.421 0.00 0.00 38.66 3.51
321 322 2.193536 GTGGCCTTGGCGACTTGTT 61.194 57.895 17.51 0.00 0.00 2.83
377 378 5.614231 CGCTTTCTCTGAAGTTCATGTCTTG 60.614 44.000 5.91 0.00 0.00 3.02
407 408 2.178235 GGCGGTTGCGAGGTATTCC 61.178 63.158 0.00 0.00 44.10 3.01
410 411 4.524318 CCGGCGGTTGCGAGGTAT 62.524 66.667 19.97 0.00 44.10 2.73
613 614 1.304381 TGCCCCAAACCATCAGCTC 60.304 57.895 0.00 0.00 0.00 4.09
617 618 0.539438 GACTGTGCCCCAAACCATCA 60.539 55.000 0.00 0.00 0.00 3.07
638 639 2.558554 ATTCCGCCGTCGTTCTCCAG 62.559 60.000 0.00 0.00 0.00 3.86
680 681 3.028223 AAGATCCGGCTCCCCTCCT 62.028 63.158 0.62 0.00 0.00 3.69
699 708 1.807142 CTTTCTCCCCAAGTTTCGAGC 59.193 52.381 0.00 0.00 0.00 5.03
779 876 2.158755 AGGCGGGAAATGATCTAACTGG 60.159 50.000 0.00 0.00 0.00 4.00
780 877 3.134458 GAGGCGGGAAATGATCTAACTG 58.866 50.000 0.00 0.00 0.00 3.16
790 887 0.546598 CCCAGTAAGAGGCGGGAAAT 59.453 55.000 0.00 0.00 41.62 2.17
868 970 3.060611 TCCCTTTTCTTCTTCTTCCCCA 58.939 45.455 0.00 0.00 0.00 4.96
871 973 3.997681 CGACTCCCTTTTCTTCTTCTTCC 59.002 47.826 0.00 0.00 0.00 3.46
872 974 4.633175 ACGACTCCCTTTTCTTCTTCTTC 58.367 43.478 0.00 0.00 0.00 2.87
873 975 4.691326 ACGACTCCCTTTTCTTCTTCTT 57.309 40.909 0.00 0.00 0.00 2.52
874 976 4.833938 AGTACGACTCCCTTTTCTTCTTCT 59.166 41.667 0.00 0.00 0.00 2.85
888 990 1.599992 CGTTCACGGAAGTACGACTC 58.400 55.000 0.00 0.00 46.00 3.36
889 991 0.386478 GCGTTCACGGAAGTACGACT 60.386 55.000 0.81 0.00 46.00 4.18
950 1059 1.215014 CTTGTCTGCGTCAACGAGCA 61.215 55.000 6.75 0.00 43.02 4.26
952 1061 0.504384 CACTTGTCTGCGTCAACGAG 59.496 55.000 6.75 1.62 43.02 4.18
957 1066 1.069090 GACCCACTTGTCTGCGTCA 59.931 57.895 0.00 0.00 32.39 4.35
1381 2052 3.138798 GCTCGTCCGCTCTGGGTA 61.139 66.667 0.00 0.00 38.76 3.69
1425 2096 2.439880 GGAAAATAGTAGGGCTCTGGCT 59.560 50.000 0.00 0.00 38.73 4.75
1437 2108 4.189231 CGATCAAACTCGGGGAAAATAGT 58.811 43.478 0.00 0.00 35.03 2.12
1448 2119 0.511221 AACGCAACCGATCAAACTCG 59.489 50.000 0.00 0.00 38.29 4.18
1471 2142 0.530744 GAGAAATCGGGCCCCAAAAC 59.469 55.000 18.66 5.44 0.00 2.43
1525 2196 7.675962 ATACACTAAATTCACGCAGGTTTAA 57.324 32.000 0.00 0.00 0.00 1.52
1535 2206 8.184192 CCATCTGGTGAAATACACTAAATTCAC 58.816 37.037 8.56 8.56 46.78 3.18
1579 2250 8.943002 ACCTAACAAAATCGGTAAAAGATACTG 58.057 33.333 0.00 0.00 0.00 2.74
1583 2254 9.675464 TGATACCTAACAAAATCGGTAAAAGAT 57.325 29.630 0.00 0.00 35.79 2.40
1598 2269 2.653543 ACAGGGGGTGATACCTAACA 57.346 50.000 0.00 0.00 38.64 2.41
1599 2270 3.113043 AGAACAGGGGGTGATACCTAAC 58.887 50.000 0.00 0.00 38.64 2.34
1602 2273 1.584724 CAGAACAGGGGGTGATACCT 58.415 55.000 0.00 0.00 38.64 3.08
1603 2274 0.107165 GCAGAACAGGGGGTGATACC 60.107 60.000 0.00 0.00 37.60 2.73
1604 2275 0.618458 TGCAGAACAGGGGGTGATAC 59.382 55.000 0.00 0.00 0.00 2.24
1673 2356 5.239525 GCACTCCATCACAGGTAATAAATCC 59.760 44.000 0.00 0.00 0.00 3.01
1715 2398 1.336755 GCAAAGCGAGTCCCAGAAAAA 59.663 47.619 0.00 0.00 0.00 1.94
1723 2406 3.056328 GTGGGGCAAAGCGAGTCC 61.056 66.667 0.00 0.00 0.00 3.85
1751 2434 2.158755 AGACAGCTACAACTTGCAAGGT 60.159 45.455 29.18 22.09 0.00 3.50
1768 2451 2.609747 ACTCTTCAGGCCAACTAGACA 58.390 47.619 5.01 0.00 0.00 3.41
1809 2492 2.620115 TCCCTAACGGATACAAGCGTAG 59.380 50.000 0.00 0.00 34.86 3.51
1844 2527 4.688879 TCACGTGTGATACATTTCTTCCAC 59.311 41.667 16.51 0.00 34.14 4.02
1905 2588 5.939296 GGAGACACACTTAGTACTCTACTGT 59.061 44.000 0.00 0.00 39.81 3.55
1917 2602 2.504175 GGCCATTAGGGAGACACACTTA 59.496 50.000 0.00 0.00 40.01 2.24
1924 2609 5.309806 TCCTTTTATAGGCCATTAGGGAGAC 59.690 44.000 5.01 0.00 44.37 3.36
1937 2622 8.517878 CCACATAAATCAGCATCCTTTTATAGG 58.482 37.037 0.00 0.00 46.27 2.57
1992 2677 5.827797 ACAACATATCAGTGTTCCAGTGTTT 59.172 36.000 0.00 0.00 40.17 2.83
2026 2711 6.313411 GCCTATAGCTCTGCAGAAATATCAAG 59.687 42.308 18.85 12.52 38.99 3.02
2128 2813 6.639686 CAGAATACATGGCAGAATATTTGCAC 59.360 38.462 18.16 11.36 43.28 4.57
2162 2847 6.807230 AGCAGTTATAAATCGATCCACGTATC 59.193 38.462 0.00 0.00 43.13 2.24
2166 2851 5.907197 AAGCAGTTATAAATCGATCCACG 57.093 39.130 0.00 0.00 44.09 4.94
2285 2978 6.699575 ATGATTCATTAGGTGGTAGCAAAC 57.300 37.500 0.00 0.00 0.00 2.93
2286 2979 7.147915 GGAAATGATTCATTAGGTGGTAGCAAA 60.148 37.037 12.15 0.00 37.29 3.68
2287 2980 6.321181 GGAAATGATTCATTAGGTGGTAGCAA 59.679 38.462 12.15 0.00 37.29 3.91
2288 2981 5.827797 GGAAATGATTCATTAGGTGGTAGCA 59.172 40.000 12.15 0.00 37.29 3.49
2289 2982 6.064717 AGGAAATGATTCATTAGGTGGTAGC 58.935 40.000 12.15 0.00 37.29 3.58
2290 2983 8.432805 ACTAGGAAATGATTCATTAGGTGGTAG 58.567 37.037 12.15 9.69 37.29 3.18
2291 2984 8.331931 ACTAGGAAATGATTCATTAGGTGGTA 57.668 34.615 12.15 0.00 37.29 3.25
2292 2985 7.213178 ACTAGGAAATGATTCATTAGGTGGT 57.787 36.000 12.15 5.43 37.29 4.16
2411 3122 6.892658 TTGACTTCTTTTTGGCTAAGCATA 57.107 33.333 0.00 0.00 0.00 3.14
2412 3123 5.789643 TTGACTTCTTTTTGGCTAAGCAT 57.210 34.783 0.00 0.00 0.00 3.79
2413 3124 5.127031 ACTTTGACTTCTTTTTGGCTAAGCA 59.873 36.000 0.00 0.00 0.00 3.91
2414 3125 5.592054 ACTTTGACTTCTTTTTGGCTAAGC 58.408 37.500 0.00 0.00 0.00 3.09
2415 3126 6.795399 TGACTTTGACTTCTTTTTGGCTAAG 58.205 36.000 0.00 0.00 0.00 2.18
2566 3282 3.644884 AGACACAACAGGTACTTCTCG 57.355 47.619 0.00 0.00 34.60 4.04
2589 3305 4.627255 GCCAGATCCAAAGAGAAAGATCCA 60.627 45.833 0.00 0.00 36.59 3.41
2660 3376 2.932622 GCTTCCGCTCTGAAGAACATCA 60.933 50.000 10.56 0.00 43.60 3.07
2691 3407 9.624697 GCAGATTACAAACTGAAACATAATCAA 57.375 29.630 3.66 0.00 36.38 2.57
2702 3418 3.788227 ACCAGGCAGATTACAAACTGA 57.212 42.857 3.66 0.00 36.38 3.41
2705 3421 3.439129 GTGGTACCAGGCAGATTACAAAC 59.561 47.826 16.93 0.00 0.00 2.93
2718 3434 8.842280 TGTAAAAGAACTATTTTGTGGTACCAG 58.158 33.333 16.93 3.95 34.35 4.00
2759 3475 7.367285 TGCAAGAAAACCATAAACATGACTAC 58.633 34.615 0.00 0.00 0.00 2.73
2765 3481 7.879160 ACATCATTGCAAGAAAACCATAAACAT 59.121 29.630 4.94 0.00 0.00 2.71
2766 3482 7.215789 ACATCATTGCAAGAAAACCATAAACA 58.784 30.769 4.94 0.00 0.00 2.83
2816 3558 4.876107 ACACGTCCCTGCAAAGAATAATAG 59.124 41.667 0.00 0.00 0.00 1.73
2817 3559 4.839121 ACACGTCCCTGCAAAGAATAATA 58.161 39.130 0.00 0.00 0.00 0.98
2841 3583 1.136500 CTCTGGGCCGTAAACCTCTAC 59.864 57.143 0.00 0.00 0.00 2.59
2959 3701 4.053295 CAAGCAAAGGAAAACAGACCATG 58.947 43.478 0.00 0.00 0.00 3.66
2963 3705 4.370364 TCACAAGCAAAGGAAAACAGAC 57.630 40.909 0.00 0.00 0.00 3.51
2977 3719 6.927294 ACTAGTAATTAGCCAATCACAAGC 57.073 37.500 0.00 0.00 32.25 4.01
3031 3773 7.331026 CACAATTACTTCCATAGACTGAAGGA 58.669 38.462 6.12 0.00 41.78 3.36
3052 3794 4.277174 ACGAACATGCTACAAAATCCACAA 59.723 37.500 0.00 0.00 0.00 3.33
3059 3801 6.533723 CAGTCCTATACGAACATGCTACAAAA 59.466 38.462 0.00 0.00 0.00 2.44
3072 3814 3.383505 CACCATTGGTCAGTCCTATACGA 59.616 47.826 5.04 0.00 31.02 3.43
3172 3915 7.036220 ACAATAGATCTTCAGGTTCACGTTAG 58.964 38.462 0.00 0.00 0.00 2.34
3211 3954 4.044426 GGTTTGAGAAGCAACACATTGTC 58.956 43.478 0.00 0.00 38.17 3.18
3215 3958 2.035066 GCAGGTTTGAGAAGCAACACAT 59.965 45.455 0.00 0.00 35.91 3.21
3216 3959 1.405105 GCAGGTTTGAGAAGCAACACA 59.595 47.619 0.00 0.00 35.91 3.72
3258 4001 5.652994 TGACAACTTTTAGCCAACTGTTT 57.347 34.783 0.00 0.00 0.00 2.83
3263 4006 4.243007 AGCATGACAACTTTTAGCCAAC 57.757 40.909 0.00 0.00 0.00 3.77
3281 4024 7.867403 GGAATTGACATCAAAAGAAACTTAGCA 59.133 33.333 0.00 0.00 39.55 3.49
3399 4143 3.442100 GCTTTTGCTACATTCCATGCTC 58.558 45.455 0.00 0.00 43.35 4.26
3412 4156 7.104939 TCTTATGCATAAAATTGGCTTTTGCT 58.895 30.769 19.32 0.00 46.54 3.91
3415 4159 9.586435 GTACTCTTATGCATAAAATTGGCTTTT 57.414 29.630 19.32 0.00 40.21 2.27
3419 4163 6.725246 ACGTACTCTTATGCATAAAATTGGC 58.275 36.000 19.32 8.13 0.00 4.52
3463 4208 1.442769 CTCCCGTTCATGGACTTGTG 58.557 55.000 1.86 0.00 0.00 3.33
3465 4210 0.036010 AGCTCCCGTTCATGGACTTG 60.036 55.000 1.86 0.00 0.00 3.16
3466 4211 0.250513 GAGCTCCCGTTCATGGACTT 59.749 55.000 0.87 0.00 0.00 3.01
3477 4222 2.035632 AGAGTTATGGAAGAGCTCCCG 58.964 52.381 10.93 0.00 44.69 5.14
3514 4259 9.522804 CGCCAAGTAAAAATTTATGGCTTATAA 57.477 29.630 20.16 0.00 42.48 0.98
3518 4263 4.629634 GCGCCAAGTAAAAATTTATGGCTT 59.370 37.500 20.16 9.39 42.48 4.35
3585 4330 4.348168 CACAGGACCTATGCCTATAAACCT 59.652 45.833 0.00 0.00 33.51 3.50
3586 4331 4.505039 CCACAGGACCTATGCCTATAAACC 60.505 50.000 0.00 0.00 33.51 3.27
3600 4346 1.905637 ATTTCGGAAACCACAGGACC 58.094 50.000 5.12 0.00 0.00 4.46
3634 4381 9.271828 AGAAACAAGGCAAACCAAAAATATAAG 57.728 29.630 0.00 0.00 39.06 1.73
3639 4386 6.054941 CCTAGAAACAAGGCAAACCAAAAAT 58.945 36.000 0.00 0.00 39.06 1.82
3657 4404 8.892723 CATCTACAAATGCACAATAACCTAGAA 58.107 33.333 0.00 0.00 0.00 2.10
3733 4480 7.834681 TCTGGCTGAGAGAGAAGTAAATTACTA 59.165 37.037 6.04 0.00 38.26 1.82
3734 4481 6.665680 TCTGGCTGAGAGAGAAGTAAATTACT 59.334 38.462 0.00 0.00 41.73 2.24
3739 4486 4.411927 AGTCTGGCTGAGAGAGAAGTAAA 58.588 43.478 0.00 0.00 0.00 2.01
3775 4522 3.504134 TCAGAGTGTCTACAAGACTGAGC 59.496 47.826 8.42 0.00 45.27 4.26
3793 4540 1.895798 ACAGAGCCACTTCGAATCAGA 59.104 47.619 0.00 0.00 0.00 3.27
3850 4597 0.839853 GATGGGAGGGGCAGCTAGAT 60.840 60.000 0.00 0.00 0.00 1.98
3851 4598 1.460305 GATGGGAGGGGCAGCTAGA 60.460 63.158 0.00 0.00 0.00 2.43
3852 4599 1.461075 AGATGGGAGGGGCAGCTAG 60.461 63.158 0.00 0.00 0.00 3.42
3853 4600 1.767672 CAGATGGGAGGGGCAGCTA 60.768 63.158 0.00 0.00 0.00 3.32
3854 4601 2.929353 ATCAGATGGGAGGGGCAGCT 62.929 60.000 0.00 0.00 0.00 4.24
3902 4649 4.446051 GCGGTAGAGAAGTCATGATTAAGC 59.554 45.833 0.00 0.00 0.00 3.09
3916 4663 3.194755 TGCACTAATTTGAGCGGTAGAGA 59.805 43.478 5.06 0.00 0.00 3.10
3918 4665 3.603158 TGCACTAATTTGAGCGGTAGA 57.397 42.857 5.06 0.00 0.00 2.59
3919 4666 4.094887 ACAATGCACTAATTTGAGCGGTAG 59.905 41.667 4.06 0.00 0.00 3.18
3923 4670 4.082274 TGACAATGCACTAATTTGAGCG 57.918 40.909 4.06 0.00 0.00 5.03
4216 4965 8.738645 ATCCTATGCAAACCTAGAAGTAAAAG 57.261 34.615 0.00 0.00 0.00 2.27
4228 4977 4.096984 CACAGAAGGAATCCTATGCAAACC 59.903 45.833 0.46 0.00 31.13 3.27
4232 4981 2.421952 GCCACAGAAGGAATCCTATGCA 60.422 50.000 0.46 0.00 31.13 3.96
4270 5019 8.198109 TGGCTATCAAGACTTATTGACTTAGTC 58.802 37.037 5.27 5.27 41.76 2.59
4301 5108 8.232913 GGTGATTATACCCTCAAGCAAAATTA 57.767 34.615 0.00 0.00 34.56 1.40
4323 5130 1.873591 CGTTCTGGAAGTTTCTGGGTG 59.126 52.381 0.00 0.00 33.76 4.61
4327 5134 1.593196 TGCCGTTCTGGAAGTTTCTG 58.407 50.000 0.00 0.00 42.00 3.02
4328 5135 2.427506 GATGCCGTTCTGGAAGTTTCT 58.572 47.619 0.00 0.00 42.00 2.52
4421 5228 4.150897 AGAAGAACCAGTTGTGTTGCTA 57.849 40.909 0.00 0.00 0.00 3.49
4465 5406 3.445096 GCTGGAGAGGTTATTGCAATGTT 59.555 43.478 22.27 4.47 0.00 2.71
4466 5407 3.019564 GCTGGAGAGGTTATTGCAATGT 58.980 45.455 22.27 0.00 0.00 2.71
4487 5428 4.517453 TCAAAATAGGTGTGGACGAAAAGG 59.483 41.667 0.00 0.00 0.00 3.11
4588 5529 1.472662 CGGAAGTGACCTCCTGTGGT 61.473 60.000 0.00 0.00 44.10 4.16
4642 5583 1.202222 CCAATTCGCCTGATGTTCAGC 60.202 52.381 0.00 0.00 42.98 4.26
4710 5652 7.041848 AGCCAATTTTCAAAAACAGCTAATGTC 60.042 33.333 2.88 0.00 43.00 3.06
4799 5741 8.034058 AGGAGACAATTTTAAAGAATGTCTCG 57.966 34.615 29.56 6.36 40.40 4.04
4808 5750 6.738114 TCAGCACAAGGAGACAATTTTAAAG 58.262 36.000 0.00 0.00 0.00 1.85
4812 5754 5.796424 ATTCAGCACAAGGAGACAATTTT 57.204 34.783 0.00 0.00 0.00 1.82
4813 5755 5.796424 AATTCAGCACAAGGAGACAATTT 57.204 34.783 0.00 0.00 0.00 1.82
4823 5765 6.304356 TGTCTAACAGAAATTCAGCACAAG 57.696 37.500 0.00 0.00 0.00 3.16
4868 6017 5.592054 GGCTTAATATCAAAAGACAAGCCC 58.408 41.667 10.60 0.00 46.95 5.19
4926 6097 5.667626 ACATACCATGAGGAACCTAATCTGT 59.332 40.000 0.00 0.00 38.69 3.41
4946 6119 1.206849 TCAAGCCGCACATCTCACATA 59.793 47.619 0.00 0.00 0.00 2.29
4957 6130 2.680841 GTGTATAATGGTTCAAGCCGCA 59.319 45.455 0.00 0.00 0.00 5.69
5015 6188 7.026562 CAGCGTGTATAATGGTTCAAAATTCA 58.973 34.615 0.00 0.00 0.00 2.57
5016 6189 6.020678 GCAGCGTGTATAATGGTTCAAAATTC 60.021 38.462 0.00 0.00 0.00 2.17
5017 6190 5.804979 GCAGCGTGTATAATGGTTCAAAATT 59.195 36.000 0.00 0.00 0.00 1.82
5018 6191 5.125417 AGCAGCGTGTATAATGGTTCAAAAT 59.875 36.000 0.00 0.00 0.00 1.82
5019 6192 4.457603 AGCAGCGTGTATAATGGTTCAAAA 59.542 37.500 0.00 0.00 0.00 2.44
5020 6193 4.006989 AGCAGCGTGTATAATGGTTCAAA 58.993 39.130 0.00 0.00 0.00 2.69
5021 6194 3.605634 AGCAGCGTGTATAATGGTTCAA 58.394 40.909 0.00 0.00 0.00 2.69
5022 6195 3.260475 AGCAGCGTGTATAATGGTTCA 57.740 42.857 0.00 0.00 0.00 3.18
5023 6196 5.696724 AGATAAGCAGCGTGTATAATGGTTC 59.303 40.000 0.00 0.00 35.26 3.62
5024 6197 5.611374 AGATAAGCAGCGTGTATAATGGTT 58.389 37.500 0.00 0.00 37.21 3.67
5025 6198 5.215252 AGATAAGCAGCGTGTATAATGGT 57.785 39.130 0.00 0.00 0.00 3.55
5026 6199 6.645003 TGTTAGATAAGCAGCGTGTATAATGG 59.355 38.462 0.00 0.00 0.00 3.16
5027 6200 7.637709 TGTTAGATAAGCAGCGTGTATAATG 57.362 36.000 0.00 0.00 0.00 1.90
5028 6201 8.833231 ATTGTTAGATAAGCAGCGTGTATAAT 57.167 30.769 0.00 0.00 0.00 1.28
5029 6202 8.141909 AGATTGTTAGATAAGCAGCGTGTATAA 58.858 33.333 0.00 0.00 0.00 0.98
5030 6203 7.658261 AGATTGTTAGATAAGCAGCGTGTATA 58.342 34.615 0.00 0.00 0.00 1.47
5031 6204 6.516718 AGATTGTTAGATAAGCAGCGTGTAT 58.483 36.000 0.00 0.00 0.00 2.29
5032 6205 5.902681 AGATTGTTAGATAAGCAGCGTGTA 58.097 37.500 0.00 0.00 0.00 2.90
5033 6206 4.759782 AGATTGTTAGATAAGCAGCGTGT 58.240 39.130 0.00 0.00 0.00 4.49
5034 6207 4.805719 TGAGATTGTTAGATAAGCAGCGTG 59.194 41.667 0.00 0.00 0.00 5.34
5035 6208 5.011090 TGAGATTGTTAGATAAGCAGCGT 57.989 39.130 0.00 0.00 0.00 5.07
5036 6209 5.107182 CCATGAGATTGTTAGATAAGCAGCG 60.107 44.000 0.00 0.00 0.00 5.18
5037 6210 5.994054 TCCATGAGATTGTTAGATAAGCAGC 59.006 40.000 0.00 0.00 0.00 5.25
5038 6211 8.442632 TTTCCATGAGATTGTTAGATAAGCAG 57.557 34.615 0.00 0.00 0.00 4.24
5039 6212 8.843262 CATTTCCATGAGATTGTTAGATAAGCA 58.157 33.333 0.00 0.00 31.07 3.91
5040 6213 9.060347 TCATTTCCATGAGATTGTTAGATAAGC 57.940 33.333 0.00 0.00 34.22 3.09
5043 6216 9.511272 CCATCATTTCCATGAGATTGTTAGATA 57.489 33.333 0.00 0.00 42.93 1.98
5044 6217 7.039923 GCCATCATTTCCATGAGATTGTTAGAT 60.040 37.037 0.00 0.00 42.93 1.98
5045 6218 6.263842 GCCATCATTTCCATGAGATTGTTAGA 59.736 38.462 0.00 0.00 42.93 2.10
5046 6219 6.040054 TGCCATCATTTCCATGAGATTGTTAG 59.960 38.462 0.00 0.00 42.93 2.34
5047 6220 5.892686 TGCCATCATTTCCATGAGATTGTTA 59.107 36.000 0.00 0.00 42.93 2.41
5048 6221 4.712829 TGCCATCATTTCCATGAGATTGTT 59.287 37.500 0.00 0.00 42.93 2.83
5049 6222 4.098960 GTGCCATCATTTCCATGAGATTGT 59.901 41.667 0.00 0.00 42.93 2.71
5050 6223 4.341235 AGTGCCATCATTTCCATGAGATTG 59.659 41.667 0.00 0.00 42.93 2.67
5051 6224 4.341235 CAGTGCCATCATTTCCATGAGATT 59.659 41.667 0.00 0.00 42.93 2.40
5052 6225 3.889538 CAGTGCCATCATTTCCATGAGAT 59.110 43.478 0.00 0.00 42.93 2.75
5053 6226 3.054213 TCAGTGCCATCATTTCCATGAGA 60.054 43.478 0.00 0.00 42.93 3.27
5054 6227 3.284617 TCAGTGCCATCATTTCCATGAG 58.715 45.455 0.00 0.00 42.93 2.90
5055 6228 3.369242 TCAGTGCCATCATTTCCATGA 57.631 42.857 0.00 0.00 43.85 3.07
5056 6229 4.665833 ATTCAGTGCCATCATTTCCATG 57.334 40.909 0.00 0.00 0.00 3.66
5057 6230 5.687166 AAATTCAGTGCCATCATTTCCAT 57.313 34.783 0.00 0.00 0.00 3.41
5058 6231 5.221682 ACAAAATTCAGTGCCATCATTTCCA 60.222 36.000 0.00 0.00 0.00 3.53
5059 6232 5.240121 ACAAAATTCAGTGCCATCATTTCC 58.760 37.500 0.00 0.00 0.00 3.13
5060 6233 6.790285 AACAAAATTCAGTGCCATCATTTC 57.210 33.333 0.00 0.00 0.00 2.17
5061 6234 6.513720 GCAAACAAAATTCAGTGCCATCATTT 60.514 34.615 0.00 0.00 0.00 2.32
5062 6235 5.049267 GCAAACAAAATTCAGTGCCATCATT 60.049 36.000 0.00 0.00 0.00 2.57
5063 6236 4.453136 GCAAACAAAATTCAGTGCCATCAT 59.547 37.500 0.00 0.00 0.00 2.45
5064 6237 3.808726 GCAAACAAAATTCAGTGCCATCA 59.191 39.130 0.00 0.00 0.00 3.07
5065 6238 3.808726 TGCAAACAAAATTCAGTGCCATC 59.191 39.130 0.00 0.00 0.00 3.51
5066 6239 3.806380 TGCAAACAAAATTCAGTGCCAT 58.194 36.364 0.00 0.00 0.00 4.40
5067 6240 3.118847 TCTGCAAACAAAATTCAGTGCCA 60.119 39.130 0.00 0.00 0.00 4.92
5068 6241 3.456280 TCTGCAAACAAAATTCAGTGCC 58.544 40.909 0.00 0.00 0.00 5.01
5069 6242 5.662211 AATCTGCAAACAAAATTCAGTGC 57.338 34.783 0.00 0.00 0.00 4.40
5070 6243 9.079833 CCTATAATCTGCAAACAAAATTCAGTG 57.920 33.333 0.00 0.00 0.00 3.66
5071 6244 9.023962 TCCTATAATCTGCAAACAAAATTCAGT 57.976 29.630 0.00 0.00 0.00 3.41
5072 6245 9.859427 TTCCTATAATCTGCAAACAAAATTCAG 57.141 29.630 0.00 0.00 0.00 3.02
5215 6389 7.431376 GGTCTTCTTAACAAACTTGTGCTTTAC 59.569 37.037 0.00 0.00 41.31 2.01
5227 6401 1.546099 GCCCCCGGTCTTCTTAACAAA 60.546 52.381 0.00 0.00 0.00 2.83
5256 6430 3.866496 GAACTGCTGTTCGTTGAAAGAG 58.134 45.455 18.99 0.00 42.39 2.85
5457 6631 4.598257 CCGATTATAGCGGCCAGG 57.402 61.111 2.24 0.00 42.55 4.45
5552 6729 3.686726 CCTCATTTTCCAGTACAGTGAGC 59.313 47.826 0.00 0.00 32.41 4.26
5555 6732 4.697352 CCTTCCTCATTTTCCAGTACAGTG 59.303 45.833 0.00 0.00 0.00 3.66
5735 6929 2.543578 CGGCAAGTTAGCTGCTCAA 58.456 52.632 4.91 0.00 33.56 3.02
5788 6983 1.468914 GGCAAGACCGGAGAATGTTTC 59.531 52.381 9.46 0.00 0.00 2.78
5789 6984 1.073923 AGGCAAGACCGGAGAATGTTT 59.926 47.619 9.46 0.00 46.52 2.83
5790 6985 0.693049 AGGCAAGACCGGAGAATGTT 59.307 50.000 9.46 0.00 46.52 2.71
5791 6986 0.036010 CAGGCAAGACCGGAGAATGT 60.036 55.000 9.46 0.00 46.52 2.71
5792 6987 1.372087 GCAGGCAAGACCGGAGAATG 61.372 60.000 9.46 2.33 46.52 2.67
5793 6988 1.078143 GCAGGCAAGACCGGAGAAT 60.078 57.895 9.46 0.00 46.52 2.40
5794 6989 0.902984 TAGCAGGCAAGACCGGAGAA 60.903 55.000 9.46 0.00 46.52 2.87
5795 6990 1.304962 TAGCAGGCAAGACCGGAGA 60.305 57.895 9.46 0.00 46.52 3.71
5796 6991 1.142748 CTAGCAGGCAAGACCGGAG 59.857 63.158 9.46 0.00 46.52 4.63
5798 6993 0.103208 CTACTAGCAGGCAAGACCGG 59.897 60.000 0.00 0.00 46.52 5.28
5802 6997 4.351874 AAACAACTACTAGCAGGCAAGA 57.648 40.909 0.00 0.00 0.00 3.02
5821 7017 1.153066 TCGGTGCTGCCACTCAAAA 60.153 52.632 0.00 0.00 41.75 2.44
5837 7033 3.429543 CACCCAAAACAATTTGCATCTCG 59.570 43.478 0.00 0.00 43.73 4.04
5868 7064 5.226396 GCAGATAACATACACCTGCTAGAG 58.774 45.833 0.00 0.00 44.75 2.43
5869 7065 4.039245 GGCAGATAACATACACCTGCTAGA 59.961 45.833 11.65 0.00 46.65 2.43
5871 7067 3.709141 TGGCAGATAACATACACCTGCTA 59.291 43.478 11.65 3.89 46.65 3.49
5872 7068 2.505407 TGGCAGATAACATACACCTGCT 59.495 45.455 11.65 0.00 46.65 4.24
5873 7069 2.614057 GTGGCAGATAACATACACCTGC 59.386 50.000 0.00 0.00 46.71 4.85
5874 7070 4.142609 AGTGGCAGATAACATACACCTG 57.857 45.455 0.00 0.00 0.00 4.00
5875 7071 4.844349 AAGTGGCAGATAACATACACCT 57.156 40.909 0.00 0.00 0.00 4.00
5876 7072 5.163652 GGAAAAGTGGCAGATAACATACACC 60.164 44.000 0.00 0.00 0.00 4.16
5878 7074 5.647658 CAGGAAAAGTGGCAGATAACATACA 59.352 40.000 0.00 0.00 0.00 2.29
5880 7076 5.815581 ACAGGAAAAGTGGCAGATAACATA 58.184 37.500 0.00 0.00 0.00 2.29
5881 7077 4.666512 ACAGGAAAAGTGGCAGATAACAT 58.333 39.130 0.00 0.00 0.00 2.71
5906 7161 6.318396 CCTGGAGATCTCTGAAAGAAAATTCC 59.682 42.308 21.81 1.98 46.34 3.01
5909 7164 6.013032 TGTCCTGGAGATCTCTGAAAGAAAAT 60.013 38.462 21.81 0.00 46.34 1.82
5915 7170 4.898265 CCTATGTCCTGGAGATCTCTGAAA 59.102 45.833 21.81 11.70 0.00 2.69
5951 7208 8.734030 CACTCTTGTTTTTCTTTCATAACGAAC 58.266 33.333 0.00 0.00 31.73 3.95
6001 7258 1.678598 TACGTGGCCATAACTCCCGG 61.679 60.000 9.72 0.00 0.00 5.73
6003 7260 0.529119 CGTACGTGGCCATAACTCCC 60.529 60.000 9.72 0.00 0.00 4.30
6020 7277 1.377202 ATTGGATGCCTTGACGCGT 60.377 52.632 13.85 13.85 0.00 6.01
6021 7278 1.063006 CATTGGATGCCTTGACGCG 59.937 57.895 3.53 3.53 0.00 6.01
6110 7368 7.471041 ACTAGGATAAAAAGAAGAAAAGGCCT 58.529 34.615 0.00 0.00 0.00 5.19
6206 7476 4.023193 CGTTTGACTTGCTAAAGGGATTGT 60.023 41.667 0.00 0.00 37.76 2.71
6208 7478 4.215613 GTCGTTTGACTTGCTAAAGGGATT 59.784 41.667 0.00 0.00 42.08 3.01
6211 7482 3.537793 GTCGTTTGACTTGCTAAAGGG 57.462 47.619 0.00 0.00 42.08 3.95
6308 7584 1.550072 ACTTAAATGGTGCACATGGGC 59.450 47.619 20.43 14.67 40.44 5.36
6433 7714 5.050091 CGAATCATAGGGTGTCAATTAGTGC 60.050 44.000 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.