Multiple sequence alignment - TraesCS3D01G387700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G387700 chr3D 100.000 2213 0 0 1 2213 502950798 502953010 0.000000e+00 4087
1 TraesCS3D01G387700 chr1D 95.547 786 34 1 1428 2212 439631837 439632622 0.000000e+00 1256
2 TraesCS3D01G387700 chr1D 82.508 303 41 5 1008 1299 413773035 413772734 2.820000e-64 255
3 TraesCS3D01G387700 chr3B 86.512 949 69 29 1 922 664023239 664024155 0.000000e+00 989
4 TraesCS3D01G387700 chr3B 94.649 299 8 2 1008 1298 472586077 472586375 7.200000e-125 457
5 TraesCS3D01G387700 chr3B 94.333 300 7 3 1008 1298 766025782 766026080 3.350000e-123 451
6 TraesCS3D01G387700 chr6A 88.747 782 85 3 1430 2210 440265489 440266268 0.000000e+00 953
7 TraesCS3D01G387700 chr6A 86.720 497 56 7 1429 1924 125245642 125245155 5.370000e-151 544
8 TraesCS3D01G387700 chr6A 87.241 290 37 0 1921 2210 125236293 125236004 4.550000e-87 331
9 TraesCS3D01G387700 chr3A 94.613 594 25 3 1 590 641802015 641802605 0.000000e+00 913
10 TraesCS3D01G387700 chr3A 80.435 644 113 11 1569 2208 588435906 588435272 1.540000e-131 479
11 TraesCS3D01G387700 chr3A 94.333 300 8 2 1008 1298 715439014 715439313 3.350000e-123 451
12 TraesCS3D01G387700 chr3A 76.692 266 20 16 602 854 641803318 641803554 2.320000e-20 110
13 TraesCS3D01G387700 chr5A 87.147 778 99 1 1434 2210 123309451 123310228 0.000000e+00 881
14 TraesCS3D01G387700 chr5A 94.595 296 8 2 1008 1295 706597748 706598043 3.350000e-123 451
15 TraesCS3D01G387700 chr2D 83.140 777 128 3 1430 2206 630844293 630845066 0.000000e+00 706
16 TraesCS3D01G387700 chr2D 94.276 297 9 1 1008 1296 525721571 525721867 4.330000e-122 448
17 TraesCS3D01G387700 chr2D 78.689 305 52 4 1010 1302 111160635 111160332 8.070000e-45 191
18 TraesCS3D01G387700 chr2A 81.783 774 138 3 1433 2206 760305552 760304782 0.000000e+00 645
19 TraesCS3D01G387700 chr4B 95.349 301 6 2 1008 1300 614065630 614065930 2.570000e-129 472
20 TraesCS3D01G387700 chr5B 95.000 300 6 2 1008 1298 50613666 50613965 1.550000e-126 462
21 TraesCS3D01G387700 chr4A 94.314 299 9 2 1008 1298 708320845 708321143 3.350000e-123 451
22 TraesCS3D01G387700 chrUn 94.276 297 8 2 1008 1296 193283783 193284078 1.560000e-121 446
23 TraesCS3D01G387700 chr6B 93.919 296 10 2 1008 1295 674947939 674947644 7.250000e-120 440
24 TraesCS3D01G387700 chr2B 93.289 298 11 2 1008 1297 772206289 772206585 4.370000e-117 431
25 TraesCS3D01G387700 chr2B 80.464 302 48 4 1010 1301 714737788 714737488 1.030000e-53 220
26 TraesCS3D01G387700 chr5D 76.962 790 159 19 1429 2210 362207224 362207998 1.570000e-116 429
27 TraesCS3D01G387700 chr6D 75.926 540 108 17 1648 2176 162257689 162257161 7.840000e-65 257
28 TraesCS3D01G387700 chr6D 81.967 305 43 5 1008 1301 380719081 380718778 4.720000e-62 248
29 TraesCS3D01G387700 chr1B 93.548 124 0 1 1182 1297 157923438 157923315 6.280000e-41 178


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G387700 chr3D 502950798 502953010 2212 False 4087.0 4087 100.0000 1 2213 1 chr3D.!!$F1 2212
1 TraesCS3D01G387700 chr1D 439631837 439632622 785 False 1256.0 1256 95.5470 1428 2212 1 chr1D.!!$F1 784
2 TraesCS3D01G387700 chr3B 664023239 664024155 916 False 989.0 989 86.5120 1 922 1 chr3B.!!$F2 921
3 TraesCS3D01G387700 chr6A 440265489 440266268 779 False 953.0 953 88.7470 1430 2210 1 chr6A.!!$F1 780
4 TraesCS3D01G387700 chr3A 641802015 641803554 1539 False 511.5 913 85.6525 1 854 2 chr3A.!!$F2 853
5 TraesCS3D01G387700 chr3A 588435272 588435906 634 True 479.0 479 80.4350 1569 2208 1 chr3A.!!$R1 639
6 TraesCS3D01G387700 chr5A 123309451 123310228 777 False 881.0 881 87.1470 1434 2210 1 chr5A.!!$F1 776
7 TraesCS3D01G387700 chr2D 630844293 630845066 773 False 706.0 706 83.1400 1430 2206 1 chr2D.!!$F2 776
8 TraesCS3D01G387700 chr2A 760304782 760305552 770 True 645.0 645 81.7830 1433 2206 1 chr2A.!!$R1 773
9 TraesCS3D01G387700 chr5D 362207224 362207998 774 False 429.0 429 76.9620 1429 2210 1 chr5D.!!$F1 781
10 TraesCS3D01G387700 chr6D 162257161 162257689 528 True 257.0 257 75.9260 1648 2176 1 chr6D.!!$R1 528

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
859 1622 0.100146 CAGACGGGTTAGGTACGCTC 59.9 60.0 0.0 0.0 37.54 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1870 2638 2.614481 GCACGAGAATTGGAGGGTGTAA 60.614 50.0 0.0 0.0 0.0 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 26 3.376859 TGGTAACTGCAACTGAACAACAG 59.623 43.478 0.00 0.00 44.98 3.16
37 39 4.269183 TGAACAACAGGTTTCATCACACT 58.731 39.130 0.00 0.00 40.63 3.55
58 60 3.057019 TCAACACACACGCTCTCATTAC 58.943 45.455 0.00 0.00 0.00 1.89
322 324 0.455005 GGACTACGTCCGGAAGAAGG 59.545 60.000 24.79 14.39 43.14 3.46
532 541 1.134818 TGTTCTGTTGTGTGCGAGAGT 60.135 47.619 0.00 0.00 0.00 3.24
556 565 5.242434 TGTGAATATTTGGTAGCTTCGTGT 58.758 37.500 0.00 0.00 0.00 4.49
570 579 4.082190 AGCTTCGTGTCTGTGATAAAGCTA 60.082 41.667 4.99 0.00 44.35 3.32
573 582 4.682787 TCGTGTCTGTGATAAAGCTATGG 58.317 43.478 0.00 0.00 0.00 2.74
590 599 4.157656 GCTATGGTTTGGCACTCAATTGTA 59.842 41.667 5.13 0.00 34.98 2.41
600 1315 1.877443 ACTCAATTGTACGGTTGTGCC 59.123 47.619 5.13 0.00 0.00 5.01
640 1380 5.544650 ACTTTTCTGATCAAATGCAAAGGG 58.455 37.500 9.30 0.00 0.00 3.95
653 1393 3.440127 TGCAAAGGGGAATTTAGGAAGG 58.560 45.455 0.00 0.00 0.00 3.46
704 1451 3.541242 ACCTGGTTTGGAATGGATCAA 57.459 42.857 0.00 0.00 0.00 2.57
716 1463 0.329261 TGGATCAAACCCTGCCTCTG 59.671 55.000 0.00 0.00 0.00 3.35
721 1468 0.959372 CAAACCCTGCCTCTGCTCTG 60.959 60.000 0.00 0.00 38.71 3.35
726 1473 0.975040 CCTGCCTCTGCTCTGGTAGT 60.975 60.000 0.00 0.00 38.71 2.73
727 1474 1.686428 CCTGCCTCTGCTCTGGTAGTA 60.686 57.143 0.00 0.00 38.71 1.82
728 1475 1.407258 CTGCCTCTGCTCTGGTAGTAC 59.593 57.143 0.00 0.00 38.71 2.73
765 1512 4.440940 GGTTGGTTGGTTGGTTTTGTAGAG 60.441 45.833 0.00 0.00 0.00 2.43
769 1525 4.023450 GGTTGGTTGGTTTTGTAGAGTAGC 60.023 45.833 0.00 0.00 0.00 3.58
820 1583 0.529378 GACCAGGCTGCATTTTGAGG 59.471 55.000 9.56 0.00 0.00 3.86
828 1591 2.811504 GCTGCATTTTGAGGCCCTTTTT 60.812 45.455 0.00 0.00 0.00 1.94
829 1592 3.556843 GCTGCATTTTGAGGCCCTTTTTA 60.557 43.478 0.00 0.00 0.00 1.52
831 1594 3.900601 TGCATTTTGAGGCCCTTTTTAGA 59.099 39.130 0.00 0.00 0.00 2.10
832 1595 4.346418 TGCATTTTGAGGCCCTTTTTAGAA 59.654 37.500 0.00 0.00 0.00 2.10
833 1596 5.163258 TGCATTTTGAGGCCCTTTTTAGAAA 60.163 36.000 0.00 0.00 0.00 2.52
857 1620 1.140375 CCAGACGGGTTAGGTACGC 59.860 63.158 0.00 0.00 36.41 4.42
859 1622 0.100146 CAGACGGGTTAGGTACGCTC 59.900 60.000 0.00 0.00 37.54 5.03
861 1624 0.179153 GACGGGTTAGGTACGCTCAC 60.179 60.000 0.00 0.00 37.54 3.51
865 1629 2.277084 GGGTTAGGTACGCTCACATTG 58.723 52.381 0.00 0.00 36.79 2.82
874 1638 7.859325 AGGTACGCTCACATTGTTATTATTT 57.141 32.000 0.00 0.00 0.00 1.40
904 1668 0.319297 ATAATAACGAGACGGCCGCC 60.319 55.000 28.58 16.50 0.00 6.13
906 1670 2.901051 AATAACGAGACGGCCGCCAG 62.901 60.000 28.58 15.59 0.00 4.85
910 1674 3.760035 GAGACGGCCGCCAGAAGA 61.760 66.667 28.58 0.00 0.00 2.87
922 1686 2.034558 CGCCAGAAGATGTTTGTTGGTT 59.965 45.455 4.45 0.00 0.00 3.67
923 1687 3.642705 GCCAGAAGATGTTTGTTGGTTC 58.357 45.455 4.45 0.00 0.00 3.62
924 1688 3.068024 GCCAGAAGATGTTTGTTGGTTCA 59.932 43.478 4.45 0.00 0.00 3.18
925 1689 4.262164 GCCAGAAGATGTTTGTTGGTTCAT 60.262 41.667 4.45 0.00 0.00 2.57
926 1690 5.224888 CCAGAAGATGTTTGTTGGTTCATG 58.775 41.667 0.00 0.00 0.00 3.07
927 1691 4.682860 CAGAAGATGTTTGTTGGTTCATGC 59.317 41.667 0.00 0.00 0.00 4.06
928 1692 3.287312 AGATGTTTGTTGGTTCATGCG 57.713 42.857 0.00 0.00 0.00 4.73
929 1693 2.622942 AGATGTTTGTTGGTTCATGCGT 59.377 40.909 0.00 0.00 0.00 5.24
930 1694 2.200792 TGTTTGTTGGTTCATGCGTG 57.799 45.000 0.00 0.00 0.00 5.34
931 1695 1.745653 TGTTTGTTGGTTCATGCGTGA 59.254 42.857 3.97 3.97 0.00 4.35
932 1696 2.164422 TGTTTGTTGGTTCATGCGTGAA 59.836 40.909 17.41 17.41 41.89 3.18
933 1697 2.772568 TTGTTGGTTCATGCGTGAAG 57.227 45.000 21.55 0.00 44.58 3.02
950 1714 3.876198 GCTTGGTGCGGGCGTATG 61.876 66.667 0.00 0.00 0.00 2.39
951 1715 2.125310 CTTGGTGCGGGCGTATGA 60.125 61.111 0.00 0.00 0.00 2.15
952 1716 2.435234 TTGGTGCGGGCGTATGAC 60.435 61.111 0.00 0.00 0.00 3.06
953 1717 4.805231 TGGTGCGGGCGTATGACG 62.805 66.667 0.00 0.00 45.88 4.35
954 1718 4.807039 GGTGCGGGCGTATGACGT 62.807 66.667 0.00 0.00 44.73 4.34
955 1719 2.812178 GTGCGGGCGTATGACGTT 60.812 61.111 0.51 0.00 44.73 3.99
956 1720 2.507547 TGCGGGCGTATGACGTTC 60.508 61.111 0.51 0.00 44.73 3.95
957 1721 3.259751 GCGGGCGTATGACGTTCC 61.260 66.667 0.51 2.75 44.73 3.62
958 1722 2.952783 CGGGCGTATGACGTTCCG 60.953 66.667 16.60 16.60 46.53 4.30
959 1723 2.182537 GGGCGTATGACGTTCCGT 59.817 61.111 0.51 0.00 44.73 4.69
968 1732 2.333938 ACGTTCCGTCTCCGTGTG 59.666 61.111 0.00 0.00 33.69 3.82
969 1733 2.333938 CGTTCCGTCTCCGTGTGT 59.666 61.111 0.00 0.00 0.00 3.72
970 1734 2.014554 CGTTCCGTCTCCGTGTGTG 61.015 63.158 0.00 0.00 0.00 3.82
971 1735 2.028484 TTCCGTCTCCGTGTGTGC 59.972 61.111 0.00 0.00 0.00 4.57
972 1736 3.834447 TTCCGTCTCCGTGTGTGCG 62.834 63.158 0.00 0.00 0.00 5.34
973 1737 4.640855 CCGTCTCCGTGTGTGCGT 62.641 66.667 0.00 0.00 0.00 5.24
974 1738 3.394874 CGTCTCCGTGTGTGCGTG 61.395 66.667 0.00 0.00 0.00 5.34
975 1739 3.702555 GTCTCCGTGTGTGCGTGC 61.703 66.667 0.00 0.00 0.00 5.34
976 1740 4.214327 TCTCCGTGTGTGCGTGCA 62.214 61.111 0.00 0.00 0.00 4.57
977 1741 3.043713 CTCCGTGTGTGCGTGCAT 61.044 61.111 0.00 0.00 0.00 3.96
978 1742 3.299304 CTCCGTGTGTGCGTGCATG 62.299 63.158 0.09 0.09 0.00 4.06
980 1744 4.310788 CGTGTGTGCGTGCATGCA 62.311 61.111 29.30 29.30 43.95 3.96
992 1756 2.835605 GCATGCAAATGCTTGTGCT 58.164 47.368 14.21 0.00 44.86 4.40
993 1757 0.719465 GCATGCAAATGCTTGTGCTC 59.281 50.000 14.21 2.26 44.86 4.26
994 1758 0.989164 CATGCAAATGCTTGTGCTCG 59.011 50.000 15.18 3.45 41.48 5.03
995 1759 0.734942 ATGCAAATGCTTGTGCTCGC 60.735 50.000 15.18 0.00 41.48 5.03
996 1760 1.372004 GCAAATGCTTGTGCTCGCA 60.372 52.632 7.49 0.00 40.87 5.10
997 1761 0.940519 GCAAATGCTTGTGCTCGCAA 60.941 50.000 7.49 0.00 39.89 4.85
998 1762 1.057636 CAAATGCTTGTGCTCGCAAG 58.942 50.000 16.40 16.40 46.21 4.01
999 1763 0.953727 AAATGCTTGTGCTCGCAAGA 59.046 45.000 22.82 11.00 46.34 3.02
1012 1776 2.202518 CAAGAATGGGCGCTTGCG 60.203 61.111 7.64 10.90 40.46 4.85
1013 1777 2.359850 AAGAATGGGCGCTTGCGA 60.360 55.556 19.55 0.00 40.46 5.10
1014 1778 2.690778 AAGAATGGGCGCTTGCGAC 61.691 57.895 19.55 16.37 40.46 5.19
1015 1779 3.430862 GAATGGGCGCTTGCGACA 61.431 61.111 22.55 17.33 40.46 4.35
1016 1780 2.976840 GAATGGGCGCTTGCGACAA 61.977 57.895 22.55 12.31 40.46 3.18
1017 1781 2.270297 GAATGGGCGCTTGCGACAAT 62.270 55.000 22.55 14.32 40.46 2.71
1018 1782 2.546645 AATGGGCGCTTGCGACAATG 62.547 55.000 22.55 0.00 40.46 2.82
1019 1783 4.481112 GGGCGCTTGCGACAATGG 62.481 66.667 22.55 0.00 40.46 3.16
1021 1785 4.403137 GCGCTTGCGACAATGGCA 62.403 61.111 19.55 0.00 38.93 4.92
1022 1786 2.502510 CGCTTGCGACAATGGCAC 60.503 61.111 9.60 0.00 40.71 5.01
1023 1787 2.502510 GCTTGCGACAATGGCACG 60.503 61.111 0.00 0.00 40.71 5.34
1036 1800 4.999939 GCACGCCAAACCGCCAAG 63.000 66.667 0.00 0.00 0.00 3.61
1037 1801 4.999939 CACGCCAAACCGCCAAGC 63.000 66.667 0.00 0.00 0.00 4.01
1040 1804 3.922640 GCCAAACCGCCAAGCCAA 61.923 61.111 0.00 0.00 0.00 4.52
1041 1805 2.339712 CCAAACCGCCAAGCCAAG 59.660 61.111 0.00 0.00 0.00 3.61
1042 1806 2.339712 CAAACCGCCAAGCCAAGG 59.660 61.111 0.00 0.00 0.00 3.61
1053 1817 2.435059 GCCAAGGCGTCTCTCACC 60.435 66.667 0.00 0.00 0.00 4.02
1054 1818 3.059982 CCAAGGCGTCTCTCACCA 58.940 61.111 0.00 0.00 0.00 4.17
1055 1819 1.599047 CCAAGGCGTCTCTCACCAT 59.401 57.895 0.00 0.00 0.00 3.55
1056 1820 0.742281 CCAAGGCGTCTCTCACCATG 60.742 60.000 0.00 0.00 0.00 3.66
1057 1821 1.078848 AAGGCGTCTCTCACCATGC 60.079 57.895 0.00 0.00 0.00 4.06
1058 1822 1.548357 AAGGCGTCTCTCACCATGCT 61.548 55.000 0.00 0.00 0.00 3.79
1059 1823 1.078848 GGCGTCTCTCACCATGCTT 60.079 57.895 0.00 0.00 0.00 3.91
1060 1824 1.364626 GGCGTCTCTCACCATGCTTG 61.365 60.000 0.00 0.00 0.00 4.01
1061 1825 0.671781 GCGTCTCTCACCATGCTTGT 60.672 55.000 0.00 0.00 0.00 3.16
1062 1826 1.800805 CGTCTCTCACCATGCTTGTT 58.199 50.000 0.00 0.00 0.00 2.83
1063 1827 2.930887 GCGTCTCTCACCATGCTTGTTA 60.931 50.000 0.00 0.00 0.00 2.41
1064 1828 2.668457 CGTCTCTCACCATGCTTGTTAC 59.332 50.000 0.00 0.00 0.00 2.50
1065 1829 2.668457 GTCTCTCACCATGCTTGTTACG 59.332 50.000 0.00 0.00 0.00 3.18
1066 1830 2.299013 TCTCTCACCATGCTTGTTACGT 59.701 45.455 0.00 0.00 0.00 3.57
1067 1831 2.412870 TCTCACCATGCTTGTTACGTG 58.587 47.619 0.00 0.31 0.00 4.49
1069 1833 1.070914 TCACCATGCTTGTTACGTGGA 59.929 47.619 8.92 0.00 45.46 4.02
1070 1834 1.196808 CACCATGCTTGTTACGTGGAC 59.803 52.381 8.92 0.00 45.46 4.02
1071 1835 0.802494 CCATGCTTGTTACGTGGACC 59.198 55.000 0.00 0.00 45.46 4.46
1072 1836 0.442310 CATGCTTGTTACGTGGACCG 59.558 55.000 0.00 0.00 44.03 4.79
1081 1845 4.185413 CGTGGACCGTCTGGAATG 57.815 61.111 0.00 0.00 39.21 2.67
1082 1846 1.589630 CGTGGACCGTCTGGAATGA 59.410 57.895 0.00 0.00 39.21 2.57
1083 1847 0.458543 CGTGGACCGTCTGGAATGAG 60.459 60.000 0.00 0.00 39.21 2.90
1084 1848 0.741221 GTGGACCGTCTGGAATGAGC 60.741 60.000 0.00 0.00 39.21 4.26
1085 1849 1.519455 GGACCGTCTGGAATGAGCG 60.519 63.158 0.00 0.00 39.21 5.03
1086 1850 1.511305 GACCGTCTGGAATGAGCGA 59.489 57.895 0.00 0.00 39.21 4.93
1087 1851 0.108804 GACCGTCTGGAATGAGCGAA 60.109 55.000 0.00 0.00 39.21 4.70
1088 1852 0.320374 ACCGTCTGGAATGAGCGAAA 59.680 50.000 0.00 0.00 39.21 3.46
1089 1853 0.721718 CCGTCTGGAATGAGCGAAAC 59.278 55.000 0.00 0.00 37.49 2.78
1090 1854 0.366871 CGTCTGGAATGAGCGAAACG 59.633 55.000 0.00 0.00 0.00 3.60
1102 1866 2.612200 CGAAACGCAAGGGTCTTCA 58.388 52.632 0.00 0.00 46.39 3.02
1103 1867 0.941542 CGAAACGCAAGGGTCTTCAA 59.058 50.000 0.00 0.00 46.39 2.69
1104 1868 1.069906 CGAAACGCAAGGGTCTTCAAG 60.070 52.381 0.00 0.00 46.39 3.02
1105 1869 0.668535 AAACGCAAGGGTCTTCAAGC 59.331 50.000 0.00 0.00 46.39 4.01
1106 1870 0.465460 AACGCAAGGGTCTTCAAGCA 60.465 50.000 0.00 0.00 46.39 3.91
1107 1871 1.166531 ACGCAAGGGTCTTCAAGCAC 61.167 55.000 0.00 0.00 46.39 4.40
1108 1872 1.165907 CGCAAGGGTCTTCAAGCACA 61.166 55.000 0.00 0.00 0.00 4.57
1109 1873 1.032014 GCAAGGGTCTTCAAGCACAA 58.968 50.000 0.00 0.00 0.00 3.33
1110 1874 1.000938 GCAAGGGTCTTCAAGCACAAG 60.001 52.381 0.00 0.00 0.00 3.16
1111 1875 2.575532 CAAGGGTCTTCAAGCACAAGA 58.424 47.619 0.00 0.00 0.00 3.02
1112 1876 2.551459 CAAGGGTCTTCAAGCACAAGAG 59.449 50.000 0.00 0.00 30.32 2.85
1113 1877 0.877743 GGGTCTTCAAGCACAAGAGC 59.122 55.000 11.17 11.17 44.32 4.09
1114 1878 0.514691 GGTCTTCAAGCACAAGAGCG 59.485 55.000 5.95 0.00 38.30 5.03
1115 1879 0.110464 GTCTTCAAGCACAAGAGCGC 60.110 55.000 0.00 0.00 40.15 5.92
1116 1880 1.208614 CTTCAAGCACAAGAGCGCC 59.791 57.895 2.29 0.00 40.15 6.53
1117 1881 2.192608 CTTCAAGCACAAGAGCGCCC 62.193 60.000 2.29 0.00 40.15 6.13
1118 1882 3.741476 CAAGCACAAGAGCGCCCC 61.741 66.667 2.29 0.00 40.15 5.80
1119 1883 3.958860 AAGCACAAGAGCGCCCCT 61.959 61.111 2.29 0.00 40.15 4.79
1120 1884 3.909086 AAGCACAAGAGCGCCCCTC 62.909 63.158 2.29 0.00 41.07 4.30
1122 1886 4.020617 CACAAGAGCGCCCCTCCA 62.021 66.667 2.29 0.00 41.74 3.86
1123 1887 4.021925 ACAAGAGCGCCCCTCCAC 62.022 66.667 2.29 0.00 41.74 4.02
1124 1888 4.785453 CAAGAGCGCCCCTCCACC 62.785 72.222 2.29 0.00 41.74 4.61
1130 1894 4.431131 CGCCCCTCCACCTGCATT 62.431 66.667 0.00 0.00 0.00 3.56
1131 1895 2.757099 GCCCCTCCACCTGCATTG 60.757 66.667 0.00 0.00 0.00 2.82
1132 1896 2.757099 CCCCTCCACCTGCATTGC 60.757 66.667 0.46 0.46 0.00 3.56
1133 1897 2.357836 CCCTCCACCTGCATTGCT 59.642 61.111 10.49 0.00 0.00 3.91
1134 1898 1.304713 CCCTCCACCTGCATTGCTT 60.305 57.895 10.49 0.00 0.00 3.91
1135 1899 1.601419 CCCTCCACCTGCATTGCTTG 61.601 60.000 10.49 4.55 0.00 4.01
1136 1900 0.609957 CCTCCACCTGCATTGCTTGA 60.610 55.000 10.49 0.00 0.00 3.02
1137 1901 0.524862 CTCCACCTGCATTGCTTGAC 59.475 55.000 10.49 0.00 0.00 3.18
1138 1902 0.111061 TCCACCTGCATTGCTTGACT 59.889 50.000 10.49 0.00 0.00 3.41
1139 1903 0.524862 CCACCTGCATTGCTTGACTC 59.475 55.000 10.49 0.00 0.00 3.36
1140 1904 0.524862 CACCTGCATTGCTTGACTCC 59.475 55.000 10.49 0.00 0.00 3.85
1141 1905 0.111061 ACCTGCATTGCTTGACTCCA 59.889 50.000 10.49 0.00 0.00 3.86
1142 1906 1.272313 ACCTGCATTGCTTGACTCCAT 60.272 47.619 10.49 0.00 0.00 3.41
1143 1907 1.404391 CCTGCATTGCTTGACTCCATC 59.596 52.381 10.49 0.00 0.00 3.51
1144 1908 2.089201 CTGCATTGCTTGACTCCATCA 58.911 47.619 10.49 0.00 34.65 3.07
1145 1909 2.490509 CTGCATTGCTTGACTCCATCAA 59.509 45.455 10.49 0.00 45.39 2.57
1146 1910 3.093814 TGCATTGCTTGACTCCATCAAT 58.906 40.909 10.49 0.00 46.37 2.57
1147 1911 4.271661 TGCATTGCTTGACTCCATCAATA 58.728 39.130 10.49 0.00 46.37 1.90
1148 1912 4.096833 TGCATTGCTTGACTCCATCAATAC 59.903 41.667 10.49 0.00 46.37 1.89
1149 1913 4.337555 GCATTGCTTGACTCCATCAATACT 59.662 41.667 0.16 0.00 46.37 2.12
1150 1914 5.732528 GCATTGCTTGACTCCATCAATACTG 60.733 44.000 0.16 0.00 46.37 2.74
1151 1915 4.824479 TGCTTGACTCCATCAATACTGA 57.176 40.909 0.00 0.00 46.37 3.41
1152 1916 4.763073 TGCTTGACTCCATCAATACTGAG 58.237 43.478 0.00 0.00 46.37 3.35
1153 1917 4.125703 GCTTGACTCCATCAATACTGAGG 58.874 47.826 0.00 0.00 46.37 3.86
1154 1918 3.827008 TGACTCCATCAATACTGAGGC 57.173 47.619 0.00 0.00 34.23 4.70
1155 1919 2.435805 TGACTCCATCAATACTGAGGCC 59.564 50.000 0.00 0.00 34.23 5.19
1156 1920 1.771255 ACTCCATCAATACTGAGGCCC 59.229 52.381 0.00 0.00 34.23 5.80
1157 1921 1.770658 CTCCATCAATACTGAGGCCCA 59.229 52.381 0.00 0.00 34.23 5.36
1158 1922 1.490490 TCCATCAATACTGAGGCCCAC 59.510 52.381 0.00 0.00 34.23 4.61
1159 1923 1.477558 CCATCAATACTGAGGCCCACC 60.478 57.143 0.00 0.00 34.23 4.61
1172 1936 3.590824 CCACCTTTGGGTCATCGC 58.409 61.111 0.00 0.00 45.41 4.58
1173 1937 2.046285 CCACCTTTGGGTCATCGCC 61.046 63.158 0.00 0.00 45.41 5.54
1174 1938 2.046314 ACCTTTGGGTCATCGCCG 60.046 61.111 0.00 0.00 43.38 6.46
1175 1939 2.824041 CCTTTGGGTCATCGCCGG 60.824 66.667 0.00 0.00 0.00 6.13
1176 1940 2.046314 CTTTGGGTCATCGCCGGT 60.046 61.111 1.90 0.00 0.00 5.28
1177 1941 2.359354 TTTGGGTCATCGCCGGTG 60.359 61.111 9.28 9.28 0.00 4.94
1181 1945 3.053291 GGTCATCGCCGGTGCAAA 61.053 61.111 11.05 0.00 37.32 3.68
1182 1946 2.622011 GGTCATCGCCGGTGCAAAA 61.622 57.895 11.05 0.00 37.32 2.44
1183 1947 1.284408 GTCATCGCCGGTGCAAAAA 59.716 52.632 11.05 0.00 37.32 1.94
1206 1970 7.696992 AAAATTAGGGTCTCTTATTTTGCGA 57.303 32.000 8.32 0.00 40.81 5.10
1207 1971 6.927294 AATTAGGGTCTCTTATTTTGCGAG 57.073 37.500 0.00 0.00 0.00 5.03
1208 1972 5.670792 TTAGGGTCTCTTATTTTGCGAGA 57.329 39.130 0.00 0.00 0.00 4.04
1209 1973 4.130286 AGGGTCTCTTATTTTGCGAGAG 57.870 45.455 0.00 0.00 38.57 3.20
1210 1974 3.515901 AGGGTCTCTTATTTTGCGAGAGT 59.484 43.478 0.00 0.00 38.41 3.24
1211 1975 3.619038 GGGTCTCTTATTTTGCGAGAGTG 59.381 47.826 0.00 0.00 38.41 3.51
1212 1976 4.495422 GGTCTCTTATTTTGCGAGAGTGA 58.505 43.478 0.00 0.00 38.41 3.41
1213 1977 5.112686 GGTCTCTTATTTTGCGAGAGTGAT 58.887 41.667 0.00 0.00 38.41 3.06
1214 1978 5.233263 GGTCTCTTATTTTGCGAGAGTGATC 59.767 44.000 0.00 0.00 38.41 2.92
1215 1979 6.039616 GTCTCTTATTTTGCGAGAGTGATCT 58.960 40.000 0.00 0.00 38.41 2.75
1216 1980 6.198216 GTCTCTTATTTTGCGAGAGTGATCTC 59.802 42.308 0.00 0.00 38.41 2.75
1217 1981 5.965922 TCTTATTTTGCGAGAGTGATCTCA 58.034 37.500 6.12 0.00 42.66 3.27
1218 1982 6.577103 TCTTATTTTGCGAGAGTGATCTCAT 58.423 36.000 6.12 0.00 42.66 2.90
1219 1983 6.478016 TCTTATTTTGCGAGAGTGATCTCATG 59.522 38.462 6.12 0.00 42.66 3.07
1220 1984 1.931906 TTGCGAGAGTGATCTCATGC 58.068 50.000 6.12 2.86 42.66 4.06
1221 1985 0.103755 TGCGAGAGTGATCTCATGCC 59.896 55.000 6.12 0.00 42.66 4.40
1222 1986 0.103755 GCGAGAGTGATCTCATGCCA 59.896 55.000 6.12 0.00 42.66 4.92
1223 1987 1.868930 GCGAGAGTGATCTCATGCCAG 60.869 57.143 6.12 0.00 42.66 4.85
1224 1988 1.408340 CGAGAGTGATCTCATGCCAGT 59.592 52.381 6.12 0.00 42.66 4.00
1225 1989 2.798853 CGAGAGTGATCTCATGCCAGTG 60.799 54.545 6.12 0.00 42.66 3.66
1226 1990 2.429971 GAGAGTGATCTCATGCCAGTGA 59.570 50.000 0.00 0.00 42.66 3.41
1227 1991 2.168106 AGAGTGATCTCATGCCAGTGAC 59.832 50.000 0.00 0.00 42.66 3.67
1228 1992 2.168106 GAGTGATCTCATGCCAGTGACT 59.832 50.000 0.00 0.00 40.18 3.41
1229 1993 2.570752 AGTGATCTCATGCCAGTGACTT 59.429 45.455 0.00 0.00 0.00 3.01
1230 1994 2.676839 GTGATCTCATGCCAGTGACTTG 59.323 50.000 0.00 0.00 0.00 3.16
1231 1995 2.303890 TGATCTCATGCCAGTGACTTGT 59.696 45.455 0.00 0.00 0.00 3.16
1232 1996 3.515104 TGATCTCATGCCAGTGACTTGTA 59.485 43.478 0.00 0.00 0.00 2.41
1233 1997 4.020307 TGATCTCATGCCAGTGACTTGTAA 60.020 41.667 0.00 0.00 0.00 2.41
1234 1998 3.664107 TCTCATGCCAGTGACTTGTAAC 58.336 45.455 0.00 0.00 0.00 2.50
1235 1999 3.070878 TCTCATGCCAGTGACTTGTAACA 59.929 43.478 0.00 0.00 0.00 2.41
1236 2000 3.814625 TCATGCCAGTGACTTGTAACAA 58.185 40.909 0.00 0.00 0.00 2.83
1237 2001 4.203226 TCATGCCAGTGACTTGTAACAAA 58.797 39.130 0.00 0.00 0.00 2.83
1238 2002 4.036262 TCATGCCAGTGACTTGTAACAAAC 59.964 41.667 0.00 0.00 0.00 2.93
1239 2003 3.616219 TGCCAGTGACTTGTAACAAACT 58.384 40.909 0.00 0.00 0.00 2.66
1240 2004 3.625764 TGCCAGTGACTTGTAACAAACTC 59.374 43.478 0.00 0.00 0.00 3.01
1241 2005 3.877508 GCCAGTGACTTGTAACAAACTCT 59.122 43.478 0.00 0.00 0.00 3.24
1242 2006 4.335594 GCCAGTGACTTGTAACAAACTCTT 59.664 41.667 0.00 0.00 0.00 2.85
1243 2007 5.163652 GCCAGTGACTTGTAACAAACTCTTT 60.164 40.000 0.00 0.00 0.00 2.52
1244 2008 6.625081 GCCAGTGACTTGTAACAAACTCTTTT 60.625 38.462 0.00 0.00 0.00 2.27
1245 2009 6.967199 CCAGTGACTTGTAACAAACTCTTTTC 59.033 38.462 0.00 0.00 0.00 2.29
1246 2010 7.148239 CCAGTGACTTGTAACAAACTCTTTTCT 60.148 37.037 0.00 0.00 0.00 2.52
1247 2011 7.905493 CAGTGACTTGTAACAAACTCTTTTCTC 59.095 37.037 0.00 0.00 0.00 2.87
1248 2012 7.824779 AGTGACTTGTAACAAACTCTTTTCTCT 59.175 33.333 0.00 0.00 0.00 3.10
1249 2013 8.117370 GTGACTTGTAACAAACTCTTTTCTCTC 58.883 37.037 0.00 0.00 0.00 3.20
1250 2014 8.041323 TGACTTGTAACAAACTCTTTTCTCTCT 58.959 33.333 0.00 0.00 0.00 3.10
1251 2015 8.794335 ACTTGTAACAAACTCTTTTCTCTCTT 57.206 30.769 0.00 0.00 0.00 2.85
1252 2016 9.886132 ACTTGTAACAAACTCTTTTCTCTCTTA 57.114 29.630 0.00 0.00 0.00 2.10
1267 2031 8.682936 TTTCTCTCTTAATTAATGGATGAGGC 57.317 34.615 10.05 0.00 0.00 4.70
1268 2032 7.379059 TCTCTCTTAATTAATGGATGAGGCA 57.621 36.000 10.05 0.00 0.00 4.75
1269 2033 7.805163 TCTCTCTTAATTAATGGATGAGGCAA 58.195 34.615 10.05 0.00 0.00 4.52
1270 2034 8.274322 TCTCTCTTAATTAATGGATGAGGCAAA 58.726 33.333 10.05 0.00 0.00 3.68
1271 2035 8.455903 TCTCTTAATTAATGGATGAGGCAAAG 57.544 34.615 10.05 0.00 0.00 2.77
1272 2036 7.013655 TCTCTTAATTAATGGATGAGGCAAAGC 59.986 37.037 10.05 0.00 0.00 3.51
1273 2037 6.835488 TCTTAATTAATGGATGAGGCAAAGCT 59.165 34.615 0.00 0.00 0.00 3.74
1274 2038 5.945144 AATTAATGGATGAGGCAAAGCTT 57.055 34.783 0.00 0.00 0.00 3.74
1275 2039 5.945144 ATTAATGGATGAGGCAAAGCTTT 57.055 34.783 5.69 5.69 0.00 3.51
1276 2040 5.743636 TTAATGGATGAGGCAAAGCTTTT 57.256 34.783 9.53 0.00 0.00 2.27
1277 2041 3.604875 ATGGATGAGGCAAAGCTTTTG 57.395 42.857 9.53 6.62 0.00 2.44
1289 2053 3.957383 GCTTTTGCCTCCGTTTCAA 57.043 47.368 0.00 0.00 40.15 2.69
1290 2054 2.217429 GCTTTTGCCTCCGTTTCAAA 57.783 45.000 0.00 0.00 40.15 2.69
1291 2055 2.545731 GCTTTTGCCTCCGTTTCAAAA 58.454 42.857 0.00 0.00 40.15 2.44
1292 2056 2.933260 GCTTTTGCCTCCGTTTCAAAAA 59.067 40.909 0.00 0.00 38.65 1.94
1313 2077 3.297830 AAAAAGAATGGGCGCTTGTAC 57.702 42.857 7.64 0.00 0.00 2.90
1314 2078 0.802494 AAAGAATGGGCGCTTGTACG 59.198 50.000 7.64 0.00 0.00 3.67
1315 2079 1.024579 AAGAATGGGCGCTTGTACGG 61.025 55.000 7.64 0.00 0.00 4.02
1322 2086 4.430765 CGCTTGTACGGCGTCCCT 62.431 66.667 19.21 0.00 46.37 4.20
1323 2087 2.813908 GCTTGTACGGCGTCCCTG 60.814 66.667 19.21 7.26 0.00 4.45
1324 2088 2.654877 CTTGTACGGCGTCCCTGT 59.345 61.111 19.21 0.00 0.00 4.00
1325 2089 1.445582 CTTGTACGGCGTCCCTGTC 60.446 63.158 19.21 2.06 0.00 3.51
1326 2090 2.830704 CTTGTACGGCGTCCCTGTCC 62.831 65.000 19.21 0.00 0.00 4.02
1327 2091 4.139234 GTACGGCGTCCCTGTCCC 62.139 72.222 19.21 0.00 0.00 4.46
1328 2092 4.371417 TACGGCGTCCCTGTCCCT 62.371 66.667 19.21 0.00 0.00 4.20
1331 2095 3.083997 GGCGTCCCTGTCCCTGAT 61.084 66.667 0.00 0.00 0.00 2.90
1332 2096 2.187946 GCGTCCCTGTCCCTGATG 59.812 66.667 0.00 0.00 0.00 3.07
1333 2097 2.187946 CGTCCCTGTCCCTGATGC 59.812 66.667 0.00 0.00 0.00 3.91
1334 2098 2.362369 CGTCCCTGTCCCTGATGCT 61.362 63.158 0.00 0.00 0.00 3.79
1335 2099 1.903877 CGTCCCTGTCCCTGATGCTT 61.904 60.000 0.00 0.00 0.00 3.91
1336 2100 0.393537 GTCCCTGTCCCTGATGCTTG 60.394 60.000 0.00 0.00 0.00 4.01
1337 2101 0.547471 TCCCTGTCCCTGATGCTTGA 60.547 55.000 0.00 0.00 0.00 3.02
1338 2102 0.393537 CCCTGTCCCTGATGCTTGAC 60.394 60.000 0.00 0.00 0.00 3.18
1339 2103 0.393537 CCTGTCCCTGATGCTTGACC 60.394 60.000 0.00 0.00 0.00 4.02
1340 2104 0.393537 CTGTCCCTGATGCTTGACCC 60.394 60.000 0.00 0.00 0.00 4.46
1341 2105 1.133181 TGTCCCTGATGCTTGACCCA 61.133 55.000 0.00 0.00 0.00 4.51
1342 2106 0.038166 GTCCCTGATGCTTGACCCAA 59.962 55.000 0.00 0.00 0.00 4.12
1343 2107 0.329261 TCCCTGATGCTTGACCCAAG 59.671 55.000 2.54 2.54 43.57 3.61
1344 2108 0.038744 CCCTGATGCTTGACCCAAGT 59.961 55.000 8.29 0.00 42.77 3.16
1345 2109 1.457346 CCTGATGCTTGACCCAAGTC 58.543 55.000 8.29 0.73 42.77 3.01
1346 2110 1.081892 CTGATGCTTGACCCAAGTCG 58.918 55.000 8.29 0.00 46.74 4.18
1347 2111 0.396435 TGATGCTTGACCCAAGTCGT 59.604 50.000 8.29 3.04 46.74 4.34
1348 2112 1.202758 TGATGCTTGACCCAAGTCGTT 60.203 47.619 8.29 0.00 46.74 3.85
1349 2113 1.880027 GATGCTTGACCCAAGTCGTTT 59.120 47.619 8.29 0.00 46.74 3.60
1350 2114 2.623878 TGCTTGACCCAAGTCGTTTA 57.376 45.000 8.29 0.00 46.74 2.01
1351 2115 2.215196 TGCTTGACCCAAGTCGTTTAC 58.785 47.619 8.29 0.00 46.74 2.01
1352 2116 1.534163 GCTTGACCCAAGTCGTTTACC 59.466 52.381 8.29 0.00 46.74 2.85
1353 2117 2.841215 CTTGACCCAAGTCGTTTACCA 58.159 47.619 0.00 0.00 46.74 3.25
1354 2118 2.536761 TGACCCAAGTCGTTTACCAG 57.463 50.000 0.00 0.00 46.74 4.00
1355 2119 1.071071 TGACCCAAGTCGTTTACCAGG 59.929 52.381 0.00 0.00 46.74 4.45
1356 2120 1.345415 GACCCAAGTCGTTTACCAGGA 59.655 52.381 0.00 0.00 32.18 3.86
1357 2121 1.071228 ACCCAAGTCGTTTACCAGGAC 59.929 52.381 0.00 0.00 40.12 3.85
1358 2122 1.609841 CCCAAGTCGTTTACCAGGACC 60.610 57.143 0.00 0.00 40.62 4.46
1359 2123 1.425412 CAAGTCGTTTACCAGGACCG 58.575 55.000 0.00 0.00 40.62 4.79
1360 2124 1.043022 AAGTCGTTTACCAGGACCGT 58.957 50.000 0.00 0.00 40.62 4.83
1361 2125 1.043022 AGTCGTTTACCAGGACCGTT 58.957 50.000 0.00 0.00 40.62 4.44
1362 2126 2.238521 AGTCGTTTACCAGGACCGTTA 58.761 47.619 0.00 0.00 40.62 3.18
1363 2127 2.029918 AGTCGTTTACCAGGACCGTTAC 60.030 50.000 0.00 0.00 40.62 2.50
1364 2128 1.959985 TCGTTTACCAGGACCGTTACA 59.040 47.619 0.00 0.00 0.00 2.41
1365 2129 2.562298 TCGTTTACCAGGACCGTTACAT 59.438 45.455 0.00 0.00 0.00 2.29
1366 2130 2.669434 CGTTTACCAGGACCGTTACATG 59.331 50.000 0.00 0.00 0.00 3.21
1367 2131 3.667360 GTTTACCAGGACCGTTACATGT 58.333 45.455 2.69 2.69 0.00 3.21
1368 2132 3.598019 TTACCAGGACCGTTACATGTC 57.402 47.619 0.00 0.00 0.00 3.06
1373 2137 3.525619 GACCGTTACATGTCCAGCA 57.474 52.632 0.00 0.00 0.00 4.41
1374 2138 2.024176 GACCGTTACATGTCCAGCAT 57.976 50.000 0.00 0.00 38.60 3.79
1382 2146 3.564262 ATGTCCAGCATGTGAGGTG 57.436 52.632 0.00 0.00 36.26 4.00
1383 2147 0.679002 ATGTCCAGCATGTGAGGTGC 60.679 55.000 0.00 0.00 42.81 5.01
1384 2148 2.046988 TCCAGCATGTGAGGTGCG 60.047 61.111 0.00 0.00 46.86 5.34
1385 2149 3.129502 CCAGCATGTGAGGTGCGG 61.130 66.667 0.00 0.00 46.86 5.69
1386 2150 2.359107 CAGCATGTGAGGTGCGGT 60.359 61.111 0.00 0.00 46.86 5.68
1387 2151 1.968017 CAGCATGTGAGGTGCGGTT 60.968 57.895 0.00 0.00 46.86 4.44
1388 2152 1.228245 AGCATGTGAGGTGCGGTTT 60.228 52.632 0.00 0.00 46.86 3.27
1389 2153 1.210155 GCATGTGAGGTGCGGTTTC 59.790 57.895 0.00 0.00 32.29 2.78
1390 2154 1.514678 GCATGTGAGGTGCGGTTTCA 61.515 55.000 0.00 0.00 32.29 2.69
1391 2155 0.238289 CATGTGAGGTGCGGTTTCAC 59.762 55.000 4.18 4.18 41.15 3.18
1392 2156 1.222113 TGTGAGGTGCGGTTTCACA 59.778 52.632 8.49 8.49 46.34 3.58
1393 2157 0.179032 TGTGAGGTGCGGTTTCACAT 60.179 50.000 8.49 0.00 44.39 3.21
1394 2158 1.070914 TGTGAGGTGCGGTTTCACATA 59.929 47.619 8.49 0.00 44.39 2.29
1395 2159 1.732259 GTGAGGTGCGGTTTCACATAG 59.268 52.381 5.82 0.00 40.62 2.23
1396 2160 0.727398 GAGGTGCGGTTTCACATAGC 59.273 55.000 0.00 0.00 38.66 2.97
1397 2161 0.676782 AGGTGCGGTTTCACATAGCC 60.677 55.000 0.00 0.00 38.66 3.93
1398 2162 1.654023 GGTGCGGTTTCACATAGCCC 61.654 60.000 0.00 0.00 38.66 5.19
1399 2163 1.743623 TGCGGTTTCACATAGCCCG 60.744 57.895 0.00 0.00 41.50 6.13
1400 2164 1.743995 GCGGTTTCACATAGCCCGT 60.744 57.895 0.00 0.00 40.70 5.28
1401 2165 1.977594 GCGGTTTCACATAGCCCGTG 61.978 60.000 0.00 0.00 40.70 4.94
1402 2166 0.390603 CGGTTTCACATAGCCCGTGA 60.391 55.000 0.00 0.00 41.53 4.35
1403 2167 1.084289 GGTTTCACATAGCCCGTGAC 58.916 55.000 0.27 0.00 42.88 3.67
1404 2168 1.084289 GTTTCACATAGCCCGTGACC 58.916 55.000 0.27 0.00 42.88 4.02
1405 2169 0.390603 TTTCACATAGCCCGTGACCG 60.391 55.000 0.27 0.00 42.88 4.79
1406 2170 1.537814 TTCACATAGCCCGTGACCGT 61.538 55.000 0.27 0.00 42.88 4.83
1407 2171 1.518572 CACATAGCCCGTGACCGTC 60.519 63.158 0.00 0.00 36.43 4.79
1408 2172 2.106332 CATAGCCCGTGACCGTCC 59.894 66.667 0.00 0.00 0.00 4.79
1409 2173 3.152400 ATAGCCCGTGACCGTCCC 61.152 66.667 0.00 0.00 0.00 4.46
1414 2178 4.065281 CCGTGACCGTCCCCTCAC 62.065 72.222 0.00 0.00 34.57 3.51
1416 2180 3.300765 GTGACCGTCCCCTCACGT 61.301 66.667 0.00 0.00 38.14 4.49
1417 2181 2.522436 TGACCGTCCCCTCACGTT 60.522 61.111 0.00 0.00 38.14 3.99
1418 2182 1.228521 TGACCGTCCCCTCACGTTA 60.229 57.895 0.00 0.00 38.14 3.18
1419 2183 1.246056 TGACCGTCCCCTCACGTTAG 61.246 60.000 0.00 0.00 38.14 2.34
1420 2184 1.941999 GACCGTCCCCTCACGTTAGG 61.942 65.000 8.93 8.93 38.14 2.69
1599 2367 1.301401 CCGTGTCTTTCTTCGGGCA 60.301 57.895 0.00 0.00 39.41 5.36
1924 2696 0.252197 AACGTGTAATGGAGGAGGGC 59.748 55.000 0.00 0.00 0.00 5.19
1948 2720 3.435890 CCTGGACCTTCAAGGGTAAAACA 60.436 47.826 8.75 0.00 40.58 2.83
2178 2950 2.158475 TCACAAAGCCCCTCAAGAATGT 60.158 45.455 0.00 0.00 0.00 2.71
2212 2984 4.759183 GTCATCAAGAAGCAGAAGGAGTTT 59.241 41.667 0.00 0.00 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 26 3.376859 TGTGTGTTGAGTGTGATGAAACC 59.623 43.478 0.00 0.00 0.00 3.27
37 39 2.238942 AATGAGAGCGTGTGTGTTGA 57.761 45.000 0.00 0.00 0.00 3.18
58 60 5.581085 GGCTGCCGGTTTATATAGATGTTAG 59.419 44.000 1.35 0.00 0.00 2.34
532 541 5.703592 ACACGAAGCTACCAAATATTCACAA 59.296 36.000 0.00 0.00 0.00 3.33
556 565 4.640201 GCCAAACCATAGCTTTATCACAGA 59.360 41.667 0.00 0.00 0.00 3.41
570 579 3.057596 CGTACAATTGAGTGCCAAACCAT 60.058 43.478 13.59 0.00 38.43 3.55
573 582 2.292292 ACCGTACAATTGAGTGCCAAAC 59.708 45.455 13.59 0.00 38.43 2.93
600 1315 2.125713 TCACCATAGGCACGCACG 60.126 61.111 0.00 0.00 0.00 5.34
601 1316 0.673644 AAGTCACCATAGGCACGCAC 60.674 55.000 0.00 0.00 0.00 5.34
602 1317 0.036164 AAAGTCACCATAGGCACGCA 59.964 50.000 0.00 0.00 0.00 5.24
603 1318 1.130561 GAAAAGTCACCATAGGCACGC 59.869 52.381 0.00 0.00 0.00 5.34
604 1319 2.416547 CAGAAAAGTCACCATAGGCACG 59.583 50.000 0.00 0.00 0.00 5.34
614 1329 6.145048 CCTTTGCATTTGATCAGAAAAGTCAC 59.855 38.462 11.19 0.00 0.00 3.67
640 1380 4.263771 TGGAACTGTCCCTTCCTAAATTCC 60.264 45.833 0.00 0.00 44.23 3.01
653 1393 1.239347 GCTTTGACCTGGAACTGTCC 58.761 55.000 0.00 0.00 45.21 4.02
683 1423 4.666412 TTGATCCATTCCAAACCAGGTA 57.334 40.909 0.00 0.00 0.00 3.08
693 1433 1.114627 GGCAGGGTTTGATCCATTCC 58.885 55.000 0.00 0.00 0.00 3.01
704 1451 2.600729 CCAGAGCAGAGGCAGGGTT 61.601 63.158 0.00 0.00 44.61 4.11
721 1468 9.978044 CCAACCATTTCTTATACTAGTACTACC 57.022 37.037 4.31 0.00 0.00 3.18
726 1473 8.828751 ACCAACCAACCATTTCTTATACTAGTA 58.171 33.333 4.77 4.77 0.00 1.82
727 1474 7.696017 ACCAACCAACCATTTCTTATACTAGT 58.304 34.615 0.00 0.00 0.00 2.57
728 1475 8.458843 CAACCAACCAACCATTTCTTATACTAG 58.541 37.037 0.00 0.00 0.00 2.57
742 1489 2.772077 ACAAAACCAACCAACCAACC 57.228 45.000 0.00 0.00 0.00 3.77
765 1512 3.456280 CTCTCTCTTTGCTCATGGCTAC 58.544 50.000 7.54 0.00 42.39 3.58
769 1525 1.134877 TCGCTCTCTCTTTGCTCATGG 60.135 52.381 0.00 0.00 0.00 3.66
820 1583 5.926542 GTCTGGTTGATTTTCTAAAAAGGGC 59.073 40.000 0.00 0.00 0.00 5.19
880 1644 4.858692 GCGGCCGTCTCGTTATTATATTAA 59.141 41.667 28.70 0.00 0.00 1.40
881 1645 4.414852 GCGGCCGTCTCGTTATTATATTA 58.585 43.478 28.70 0.00 0.00 0.98
882 1646 3.248266 GCGGCCGTCTCGTTATTATATT 58.752 45.455 28.70 0.00 0.00 1.28
883 1647 2.416431 GGCGGCCGTCTCGTTATTATAT 60.416 50.000 28.70 0.00 0.00 0.86
884 1648 1.068333 GGCGGCCGTCTCGTTATTATA 60.068 52.381 28.70 0.00 0.00 0.98
885 1649 0.319297 GGCGGCCGTCTCGTTATTAT 60.319 55.000 28.70 0.00 0.00 1.28
886 1650 1.066257 GGCGGCCGTCTCGTTATTA 59.934 57.895 28.70 0.00 0.00 0.98
887 1651 2.202837 GGCGGCCGTCTCGTTATT 60.203 61.111 28.70 0.00 0.00 1.40
888 1652 3.426117 CTGGCGGCCGTCTCGTTAT 62.426 63.158 32.34 0.00 0.00 1.89
904 1668 4.682860 GCATGAACCAACAAACATCTTCTG 59.317 41.667 0.00 0.00 0.00 3.02
906 1670 3.670055 CGCATGAACCAACAAACATCTTC 59.330 43.478 0.00 0.00 0.00 2.87
910 1674 2.360483 TCACGCATGAACCAACAAACAT 59.640 40.909 0.00 0.00 0.00 2.71
922 1686 1.855213 GCACCAAGCTTCACGCATGA 61.855 55.000 0.00 0.00 39.61 3.07
923 1687 1.443194 GCACCAAGCTTCACGCATG 60.443 57.895 0.00 0.00 42.61 4.06
924 1688 2.956987 GCACCAAGCTTCACGCAT 59.043 55.556 0.00 0.00 42.61 4.73
925 1689 3.648982 CGCACCAAGCTTCACGCA 61.649 61.111 0.00 0.00 42.61 5.24
926 1690 4.389576 CCGCACCAAGCTTCACGC 62.390 66.667 0.00 0.00 42.61 5.34
927 1691 3.726517 CCCGCACCAAGCTTCACG 61.727 66.667 0.00 0.00 42.61 4.35
928 1692 4.043200 GCCCGCACCAAGCTTCAC 62.043 66.667 0.00 0.00 42.61 3.18
931 1695 3.622060 ATACGCCCGCACCAAGCTT 62.622 57.895 0.00 0.00 42.61 3.74
932 1696 4.096003 ATACGCCCGCACCAAGCT 62.096 61.111 0.00 0.00 42.61 3.74
933 1697 3.876198 CATACGCCCGCACCAAGC 61.876 66.667 0.00 0.00 40.87 4.01
934 1698 2.125310 TCATACGCCCGCACCAAG 60.125 61.111 0.00 0.00 0.00 3.61
935 1699 2.435234 GTCATACGCCCGCACCAA 60.435 61.111 0.00 0.00 0.00 3.67
936 1700 4.805231 CGTCATACGCCCGCACCA 62.805 66.667 0.00 0.00 33.65 4.17
958 1722 3.702555 GCACGCACACACGGAGAC 61.703 66.667 0.00 0.00 37.37 3.36
959 1723 3.513768 ATGCACGCACACACGGAGA 62.514 57.895 0.00 0.00 37.37 3.71
960 1724 3.043713 ATGCACGCACACACGGAG 61.044 61.111 0.00 0.00 37.37 4.63
961 1725 3.345011 CATGCACGCACACACGGA 61.345 61.111 0.00 0.00 37.37 4.69
963 1727 3.803696 TTGCATGCACGCACACACG 62.804 57.895 22.58 0.00 42.87 4.49
964 1728 0.940519 ATTTGCATGCACGCACACAC 60.941 50.000 22.58 0.00 42.87 3.82
965 1729 0.940047 CATTTGCATGCACGCACACA 60.940 50.000 22.58 0.00 42.87 3.72
966 1730 1.776580 CATTTGCATGCACGCACAC 59.223 52.632 22.58 0.00 42.87 3.82
967 1731 4.246727 CATTTGCATGCACGCACA 57.753 50.000 22.58 0.00 42.87 4.57
975 1739 0.989164 CGAGCACAAGCATTTGCATG 59.011 50.000 2.62 5.76 45.49 4.06
976 1740 0.734942 GCGAGCACAAGCATTTGCAT 60.735 50.000 2.62 0.00 45.49 3.96
977 1741 1.372004 GCGAGCACAAGCATTTGCA 60.372 52.632 2.62 0.00 45.49 4.08
978 1742 0.940519 TTGCGAGCACAAGCATTTGC 60.941 50.000 0.00 0.00 45.49 3.68
979 1743 1.057636 CTTGCGAGCACAAGCATTTG 58.942 50.000 0.00 0.00 45.49 2.32
980 1744 0.953727 TCTTGCGAGCACAAGCATTT 59.046 45.000 0.00 0.00 45.43 2.32
981 1745 0.953727 TTCTTGCGAGCACAAGCATT 59.046 45.000 0.00 0.00 45.43 3.56
982 1746 1.135489 CATTCTTGCGAGCACAAGCAT 60.135 47.619 0.00 2.33 45.43 3.79
983 1747 0.239082 CATTCTTGCGAGCACAAGCA 59.761 50.000 0.00 0.98 45.43 3.91
984 1748 0.455633 CCATTCTTGCGAGCACAAGC 60.456 55.000 0.00 0.00 45.43 4.01
985 1749 0.169672 CCCATTCTTGCGAGCACAAG 59.830 55.000 0.00 7.59 46.86 3.16
986 1750 1.865788 GCCCATTCTTGCGAGCACAA 61.866 55.000 0.00 0.00 0.00 3.33
987 1751 2.334946 GCCCATTCTTGCGAGCACA 61.335 57.895 0.00 0.00 0.00 4.57
988 1752 2.486966 GCCCATTCTTGCGAGCAC 59.513 61.111 0.00 0.00 0.00 4.40
995 1759 2.202518 CGCAAGCGCCCATTCTTG 60.203 61.111 2.29 1.37 41.79 3.02
996 1760 2.359850 TCGCAAGCGCCCATTCTT 60.360 55.556 9.97 0.00 39.59 2.52
997 1761 3.127533 GTCGCAAGCGCCCATTCT 61.128 61.111 9.97 0.00 39.59 2.40
998 1762 2.270297 ATTGTCGCAAGCGCCCATTC 62.270 55.000 9.97 0.00 39.59 2.67
999 1763 2.342650 ATTGTCGCAAGCGCCCATT 61.343 52.632 9.97 3.02 39.59 3.16
1000 1764 2.751436 ATTGTCGCAAGCGCCCAT 60.751 55.556 9.97 0.00 39.59 4.00
1001 1765 3.736100 CATTGTCGCAAGCGCCCA 61.736 61.111 9.97 6.08 39.59 5.36
1002 1766 4.481112 CCATTGTCGCAAGCGCCC 62.481 66.667 9.97 3.37 39.59 6.13
1004 1768 4.403137 TGCCATTGTCGCAAGCGC 62.403 61.111 9.97 0.00 39.59 5.92
1005 1769 2.502510 GTGCCATTGTCGCAAGCG 60.503 61.111 8.36 8.36 38.13 4.68
1006 1770 2.502510 CGTGCCATTGTCGCAAGC 60.503 61.111 0.00 0.00 38.13 4.01
1010 1774 3.550339 TTTGGCGTGCCATTGTCGC 62.550 57.895 15.40 0.00 46.64 5.19
1011 1775 1.729131 GTTTGGCGTGCCATTGTCG 60.729 57.895 15.40 0.00 46.64 4.35
1012 1776 1.372872 GGTTTGGCGTGCCATTGTC 60.373 57.895 15.40 5.61 46.64 3.18
1013 1777 2.733945 GGTTTGGCGTGCCATTGT 59.266 55.556 15.40 0.00 46.64 2.71
1014 1778 2.430582 CGGTTTGGCGTGCCATTG 60.431 61.111 15.40 1.23 46.64 2.82
1015 1779 4.356442 GCGGTTTGGCGTGCCATT 62.356 61.111 15.40 0.00 46.64 3.16
1023 1787 3.864160 CTTGGCTTGGCGGTTTGGC 62.864 63.158 0.00 0.00 45.12 4.52
1024 1788 2.339712 CTTGGCTTGGCGGTTTGG 59.660 61.111 0.00 0.00 0.00 3.28
1025 1789 2.339712 CCTTGGCTTGGCGGTTTG 59.660 61.111 0.00 0.00 0.00 2.93
1026 1790 3.615709 GCCTTGGCTTGGCGGTTT 61.616 61.111 4.11 0.00 41.03 3.27
1031 1795 3.435186 GAGACGCCTTGGCTTGGC 61.435 66.667 10.12 10.51 46.42 4.52
1032 1796 1.743252 GAGAGACGCCTTGGCTTGG 60.743 63.158 10.12 0.00 0.00 3.61
1033 1797 1.004560 TGAGAGACGCCTTGGCTTG 60.005 57.895 10.12 0.00 0.00 4.01
1034 1798 1.004440 GTGAGAGACGCCTTGGCTT 60.004 57.895 10.12 0.00 0.00 4.35
1035 1799 2.659610 GTGAGAGACGCCTTGGCT 59.340 61.111 10.12 0.00 0.00 4.75
1036 1800 2.435059 GGTGAGAGACGCCTTGGC 60.435 66.667 0.75 0.75 44.93 4.52
1042 1806 0.671781 ACAAGCATGGTGAGAGACGC 60.672 55.000 0.00 0.00 0.00 5.19
1043 1807 1.800805 AACAAGCATGGTGAGAGACG 58.199 50.000 0.00 0.00 0.00 4.18
1044 1808 2.668457 CGTAACAAGCATGGTGAGAGAC 59.332 50.000 0.00 0.00 0.00 3.36
1045 1809 2.299013 ACGTAACAAGCATGGTGAGAGA 59.701 45.455 0.00 0.00 0.00 3.10
1046 1810 2.413112 CACGTAACAAGCATGGTGAGAG 59.587 50.000 0.00 0.00 0.00 3.20
1047 1811 2.412870 CACGTAACAAGCATGGTGAGA 58.587 47.619 0.00 0.00 0.00 3.27
1048 1812 1.464608 CCACGTAACAAGCATGGTGAG 59.535 52.381 0.00 0.00 0.00 3.51
1049 1813 1.070914 TCCACGTAACAAGCATGGTGA 59.929 47.619 0.00 0.00 0.00 4.02
1050 1814 1.196808 GTCCACGTAACAAGCATGGTG 59.803 52.381 0.00 0.00 0.00 4.17
1051 1815 1.519408 GTCCACGTAACAAGCATGGT 58.481 50.000 0.00 0.00 0.00 3.55
1052 1816 0.802494 GGTCCACGTAACAAGCATGG 59.198 55.000 0.00 0.00 0.00 3.66
1053 1817 0.442310 CGGTCCACGTAACAAGCATG 59.558 55.000 0.00 0.00 37.93 4.06
1054 1818 2.835605 CGGTCCACGTAACAAGCAT 58.164 52.632 0.00 0.00 37.93 3.79
1055 1819 4.347096 CGGTCCACGTAACAAGCA 57.653 55.556 0.00 0.00 37.93 3.91
1065 1829 0.741221 GCTCATTCCAGACGGTCCAC 60.741 60.000 4.14 0.00 0.00 4.02
1066 1830 1.596934 GCTCATTCCAGACGGTCCA 59.403 57.895 4.14 0.00 0.00 4.02
1067 1831 1.519455 CGCTCATTCCAGACGGTCC 60.519 63.158 4.14 0.00 0.00 4.46
1068 1832 0.108804 TTCGCTCATTCCAGACGGTC 60.109 55.000 0.00 0.00 0.00 4.79
1069 1833 0.320374 TTTCGCTCATTCCAGACGGT 59.680 50.000 0.00 0.00 0.00 4.83
1070 1834 0.721718 GTTTCGCTCATTCCAGACGG 59.278 55.000 0.00 0.00 0.00 4.79
1071 1835 0.366871 CGTTTCGCTCATTCCAGACG 59.633 55.000 0.00 0.00 0.00 4.18
1084 1848 0.941542 TTGAAGACCCTTGCGTTTCG 59.058 50.000 0.00 0.00 0.00 3.46
1085 1849 1.335051 GCTTGAAGACCCTTGCGTTTC 60.335 52.381 0.00 0.00 0.00 2.78
1086 1850 0.668535 GCTTGAAGACCCTTGCGTTT 59.331 50.000 0.00 0.00 0.00 3.60
1087 1851 0.465460 TGCTTGAAGACCCTTGCGTT 60.465 50.000 0.00 0.00 0.00 4.84
1088 1852 1.148273 TGCTTGAAGACCCTTGCGT 59.852 52.632 0.00 0.00 0.00 5.24
1089 1853 1.165907 TGTGCTTGAAGACCCTTGCG 61.166 55.000 0.00 0.00 0.00 4.85
1090 1854 1.000938 CTTGTGCTTGAAGACCCTTGC 60.001 52.381 0.00 0.00 0.00 4.01
1091 1855 2.551459 CTCTTGTGCTTGAAGACCCTTG 59.449 50.000 0.00 0.00 0.00 3.61
1092 1856 2.856222 CTCTTGTGCTTGAAGACCCTT 58.144 47.619 0.00 0.00 0.00 3.95
1093 1857 1.544314 GCTCTTGTGCTTGAAGACCCT 60.544 52.381 0.00 0.00 0.00 4.34
1094 1858 0.877743 GCTCTTGTGCTTGAAGACCC 59.122 55.000 0.00 0.00 0.00 4.46
1095 1859 0.514691 CGCTCTTGTGCTTGAAGACC 59.485 55.000 0.00 0.00 0.00 3.85
1096 1860 0.110464 GCGCTCTTGTGCTTGAAGAC 60.110 55.000 0.00 0.00 45.43 3.01
1097 1861 2.238353 GCGCTCTTGTGCTTGAAGA 58.762 52.632 0.00 0.00 45.43 2.87
1098 1862 4.834828 GCGCTCTTGTGCTTGAAG 57.165 55.556 0.00 0.00 45.43 3.02
1105 1869 4.020617 TGGAGGGGCGCTCTTGTG 62.021 66.667 27.72 0.00 0.00 3.33
1106 1870 4.021925 GTGGAGGGGCGCTCTTGT 62.022 66.667 27.72 0.00 0.00 3.16
1107 1871 4.785453 GGTGGAGGGGCGCTCTTG 62.785 72.222 27.72 0.00 0.00 3.02
1113 1877 4.431131 AATGCAGGTGGAGGGGCG 62.431 66.667 0.00 0.00 0.00 6.13
1114 1878 2.757099 CAATGCAGGTGGAGGGGC 60.757 66.667 0.00 0.00 0.00 5.80
1115 1879 2.757099 GCAATGCAGGTGGAGGGG 60.757 66.667 0.00 0.00 0.00 4.79
1116 1880 1.304713 AAGCAATGCAGGTGGAGGG 60.305 57.895 8.35 0.00 0.00 4.30
1117 1881 0.609957 TCAAGCAATGCAGGTGGAGG 60.610 55.000 8.35 0.00 0.00 4.30
1118 1882 0.524862 GTCAAGCAATGCAGGTGGAG 59.475 55.000 8.35 0.00 0.00 3.86
1119 1883 0.111061 AGTCAAGCAATGCAGGTGGA 59.889 50.000 8.35 0.00 0.00 4.02
1120 1884 0.524862 GAGTCAAGCAATGCAGGTGG 59.475 55.000 8.35 0.00 0.00 4.61
1121 1885 0.524862 GGAGTCAAGCAATGCAGGTG 59.475 55.000 8.35 2.45 0.00 4.00
1122 1886 0.111061 TGGAGTCAAGCAATGCAGGT 59.889 50.000 8.35 0.00 0.00 4.00
1123 1887 1.404391 GATGGAGTCAAGCAATGCAGG 59.596 52.381 8.35 0.00 0.00 4.85
1124 1888 2.089201 TGATGGAGTCAAGCAATGCAG 58.911 47.619 8.35 0.00 32.78 4.41
1125 1889 2.203470 TGATGGAGTCAAGCAATGCA 57.797 45.000 8.35 0.00 32.78 3.96
1134 1898 2.435805 GGCCTCAGTATTGATGGAGTCA 59.564 50.000 0.00 0.00 31.68 3.41
1135 1899 2.224402 GGGCCTCAGTATTGATGGAGTC 60.224 54.545 0.84 0.00 31.68 3.36
1136 1900 1.771255 GGGCCTCAGTATTGATGGAGT 59.229 52.381 0.84 0.00 31.68 3.85
1137 1901 1.770658 TGGGCCTCAGTATTGATGGAG 59.229 52.381 4.53 0.00 31.68 3.86
1138 1902 1.490490 GTGGGCCTCAGTATTGATGGA 59.510 52.381 4.53 0.00 31.68 3.41
1139 1903 1.477558 GGTGGGCCTCAGTATTGATGG 60.478 57.143 4.53 0.00 31.68 3.51
1140 1904 1.492176 AGGTGGGCCTCAGTATTGATG 59.508 52.381 4.53 0.00 42.67 3.07
1141 1905 1.898863 AGGTGGGCCTCAGTATTGAT 58.101 50.000 4.53 0.00 42.67 2.57
1142 1906 1.668826 AAGGTGGGCCTCAGTATTGA 58.331 50.000 4.53 0.00 46.33 2.57
1143 1907 2.094675 CAAAGGTGGGCCTCAGTATTG 58.905 52.381 4.53 1.58 46.33 1.90
1144 1908 1.005924 CCAAAGGTGGGCCTCAGTATT 59.994 52.381 4.53 0.00 46.33 1.89
1145 1909 0.625849 CCAAAGGTGGGCCTCAGTAT 59.374 55.000 4.53 0.00 46.33 2.12
1146 1910 2.074967 CCAAAGGTGGGCCTCAGTA 58.925 57.895 4.53 0.00 46.33 2.74
1147 1911 2.846532 CCAAAGGTGGGCCTCAGT 59.153 61.111 4.53 0.00 46.33 3.41
1158 1922 2.824041 CCGGCGATGACCCAAAGG 60.824 66.667 9.30 0.00 40.04 3.11
1159 1923 2.046314 ACCGGCGATGACCCAAAG 60.046 61.111 9.30 0.00 0.00 2.77
1160 1924 2.359354 CACCGGCGATGACCCAAA 60.359 61.111 9.30 0.00 0.00 3.28
1164 1928 2.136196 TTTTTGCACCGGCGATGACC 62.136 55.000 4.84 0.00 45.35 4.02
1165 1929 1.284408 TTTTTGCACCGGCGATGAC 59.716 52.632 4.84 0.00 45.35 3.06
1166 1930 3.751342 TTTTTGCACCGGCGATGA 58.249 50.000 4.84 0.00 45.35 2.92
1181 1945 8.117813 TCGCAAAATAAGAGACCCTAATTTTT 57.882 30.769 0.00 0.00 29.66 1.94
1182 1946 7.610305 TCTCGCAAAATAAGAGACCCTAATTTT 59.390 33.333 0.00 0.00 36.25 1.82
1183 1947 7.110155 TCTCGCAAAATAAGAGACCCTAATTT 58.890 34.615 0.00 0.00 36.25 1.82
1184 1948 6.650120 TCTCGCAAAATAAGAGACCCTAATT 58.350 36.000 0.00 0.00 36.25 1.40
1185 1949 6.127026 ACTCTCGCAAAATAAGAGACCCTAAT 60.127 38.462 5.67 0.00 39.09 1.73
1186 1950 5.187186 ACTCTCGCAAAATAAGAGACCCTAA 59.813 40.000 5.67 0.00 39.09 2.69
1187 1951 4.710375 ACTCTCGCAAAATAAGAGACCCTA 59.290 41.667 5.67 0.00 39.09 3.53
1188 1952 3.515901 ACTCTCGCAAAATAAGAGACCCT 59.484 43.478 5.67 0.00 39.09 4.34
1189 1953 3.619038 CACTCTCGCAAAATAAGAGACCC 59.381 47.826 5.67 0.00 39.09 4.46
1190 1954 4.495422 TCACTCTCGCAAAATAAGAGACC 58.505 43.478 5.67 0.00 39.09 3.85
1191 1955 6.039616 AGATCACTCTCGCAAAATAAGAGAC 58.960 40.000 5.67 0.00 39.09 3.36
1192 1956 6.214191 AGATCACTCTCGCAAAATAAGAGA 57.786 37.500 5.67 0.00 39.09 3.10
1193 1957 6.509317 GAGATCACTCTCGCAAAATAAGAG 57.491 41.667 0.00 0.00 38.70 2.85
1205 1969 2.429971 TCACTGGCATGAGATCACTCTC 59.570 50.000 0.00 0.00 46.89 3.20
1206 1970 2.168106 GTCACTGGCATGAGATCACTCT 59.832 50.000 0.00 0.00 42.99 3.24
1207 1971 2.168106 AGTCACTGGCATGAGATCACTC 59.832 50.000 0.00 0.00 42.88 3.51
1208 1972 2.186243 AGTCACTGGCATGAGATCACT 58.814 47.619 0.00 0.00 0.00 3.41
1209 1973 2.676839 CAAGTCACTGGCATGAGATCAC 59.323 50.000 0.00 0.00 0.00 3.06
1210 1974 2.303890 ACAAGTCACTGGCATGAGATCA 59.696 45.455 0.00 0.00 0.00 2.92
1211 1975 2.983229 ACAAGTCACTGGCATGAGATC 58.017 47.619 0.00 0.00 0.00 2.75
1212 1976 4.256920 GTTACAAGTCACTGGCATGAGAT 58.743 43.478 0.00 0.00 0.00 2.75
1213 1977 3.070878 TGTTACAAGTCACTGGCATGAGA 59.929 43.478 0.00 0.00 0.00 3.27
1214 1978 3.402110 TGTTACAAGTCACTGGCATGAG 58.598 45.455 0.00 0.00 0.00 2.90
1215 1979 3.483808 TGTTACAAGTCACTGGCATGA 57.516 42.857 0.00 0.00 0.00 3.07
1216 1980 4.036734 AGTTTGTTACAAGTCACTGGCATG 59.963 41.667 0.00 0.00 0.00 4.06
1217 1981 4.207165 AGTTTGTTACAAGTCACTGGCAT 58.793 39.130 0.00 0.00 0.00 4.40
1218 1982 3.616219 AGTTTGTTACAAGTCACTGGCA 58.384 40.909 0.00 0.00 0.00 4.92
1219 1983 3.877508 AGAGTTTGTTACAAGTCACTGGC 59.122 43.478 5.75 0.00 0.00 4.85
1220 1984 6.436843 AAAGAGTTTGTTACAAGTCACTGG 57.563 37.500 5.75 0.00 0.00 4.00
1221 1985 7.752695 AGAAAAGAGTTTGTTACAAGTCACTG 58.247 34.615 5.75 0.00 0.00 3.66
1222 1986 7.824779 AGAGAAAAGAGTTTGTTACAAGTCACT 59.175 33.333 10.70 6.49 0.00 3.41
1223 1987 7.975750 AGAGAAAAGAGTTTGTTACAAGTCAC 58.024 34.615 10.70 2.23 0.00 3.67
1224 1988 8.041323 AGAGAGAAAAGAGTTTGTTACAAGTCA 58.959 33.333 10.70 0.00 0.00 3.41
1225 1989 8.426881 AGAGAGAAAAGAGTTTGTTACAAGTC 57.573 34.615 0.00 0.00 0.00 3.01
1226 1990 8.794335 AAGAGAGAAAAGAGTTTGTTACAAGT 57.206 30.769 0.00 0.00 0.00 3.16
1241 2005 9.125026 GCCTCATCCATTAATTAAGAGAGAAAA 57.875 33.333 11.18 0.00 0.00 2.29
1242 2006 8.274322 TGCCTCATCCATTAATTAAGAGAGAAA 58.726 33.333 11.18 1.93 0.00 2.52
1243 2007 7.805163 TGCCTCATCCATTAATTAAGAGAGAA 58.195 34.615 11.18 1.07 0.00 2.87
1244 2008 7.379059 TGCCTCATCCATTAATTAAGAGAGA 57.621 36.000 11.18 3.43 0.00 3.10
1245 2009 8.455903 TTTGCCTCATCCATTAATTAAGAGAG 57.544 34.615 11.18 9.24 0.00 3.20
1246 2010 7.013655 GCTTTGCCTCATCCATTAATTAAGAGA 59.986 37.037 11.18 7.44 0.00 3.10
1247 2011 7.014038 AGCTTTGCCTCATCCATTAATTAAGAG 59.986 37.037 3.94 4.57 0.00 2.85
1248 2012 6.835488 AGCTTTGCCTCATCCATTAATTAAGA 59.165 34.615 3.94 0.00 0.00 2.10
1249 2013 7.047460 AGCTTTGCCTCATCCATTAATTAAG 57.953 36.000 3.94 0.00 0.00 1.85
1250 2014 7.422465 AAGCTTTGCCTCATCCATTAATTAA 57.578 32.000 0.00 0.00 0.00 1.40
1251 2015 7.422465 AAAGCTTTGCCTCATCCATTAATTA 57.578 32.000 11.80 0.00 0.00 1.40
1252 2016 5.945144 AAGCTTTGCCTCATCCATTAATT 57.055 34.783 0.00 0.00 0.00 1.40
1253 2017 5.945144 AAAGCTTTGCCTCATCCATTAAT 57.055 34.783 11.80 0.00 0.00 1.40
1254 2018 5.481105 CAAAAGCTTTGCCTCATCCATTAA 58.519 37.500 13.54 0.00 0.00 1.40
1255 2019 4.621274 GCAAAAGCTTTGCCTCATCCATTA 60.621 41.667 13.54 0.00 39.38 1.90
1256 2020 3.867216 GCAAAAGCTTTGCCTCATCCATT 60.867 43.478 13.54 0.00 39.38 3.16
1257 2021 2.354403 GCAAAAGCTTTGCCTCATCCAT 60.354 45.455 13.54 0.00 39.38 3.41
1258 2022 1.001181 GCAAAAGCTTTGCCTCATCCA 59.999 47.619 13.54 0.00 39.38 3.41
1259 2023 1.718396 GCAAAAGCTTTGCCTCATCC 58.282 50.000 13.54 0.00 39.38 3.51
1266 2030 0.249447 AACGGAGGCAAAAGCTTTGC 60.249 50.000 13.54 17.13 44.22 3.68
1267 2031 2.127251 GAAACGGAGGCAAAAGCTTTG 58.873 47.619 13.54 8.26 0.00 2.77
1268 2032 1.754226 TGAAACGGAGGCAAAAGCTTT 59.246 42.857 5.69 5.69 0.00 3.51
1269 2033 1.398692 TGAAACGGAGGCAAAAGCTT 58.601 45.000 0.00 0.00 0.00 3.74
1270 2034 1.398692 TTGAAACGGAGGCAAAAGCT 58.601 45.000 0.00 0.00 0.00 3.74
1271 2035 2.217429 TTTGAAACGGAGGCAAAAGC 57.783 45.000 0.00 0.00 0.00 3.51
1293 2057 2.351350 CGTACAAGCGCCCATTCTTTTT 60.351 45.455 2.29 0.00 0.00 1.94
1294 2058 1.199097 CGTACAAGCGCCCATTCTTTT 59.801 47.619 2.29 0.00 0.00 2.27
1295 2059 0.802494 CGTACAAGCGCCCATTCTTT 59.198 50.000 2.29 0.00 0.00 2.52
1296 2060 1.024579 CCGTACAAGCGCCCATTCTT 61.025 55.000 2.29 0.00 0.00 2.52
1297 2061 1.449601 CCGTACAAGCGCCCATTCT 60.450 57.895 2.29 0.00 0.00 2.40
1298 2062 3.098555 CCGTACAAGCGCCCATTC 58.901 61.111 2.29 0.00 0.00 2.67
1299 2063 3.131478 GCCGTACAAGCGCCCATT 61.131 61.111 2.29 0.00 0.00 3.16
1306 2070 2.813908 CAGGGACGCCGTACAAGC 60.814 66.667 0.12 0.00 0.00 4.01
1307 2071 1.445582 GACAGGGACGCCGTACAAG 60.446 63.158 0.12 0.00 0.00 3.16
1308 2072 2.652530 GACAGGGACGCCGTACAA 59.347 61.111 0.12 0.00 0.00 2.41
1309 2073 3.376078 GGACAGGGACGCCGTACA 61.376 66.667 0.12 0.00 0.00 2.90
1310 2074 4.139234 GGGACAGGGACGCCGTAC 62.139 72.222 0.00 0.00 0.00 3.67
1311 2075 4.371417 AGGGACAGGGACGCCGTA 62.371 66.667 0.00 0.00 0.00 4.02
1314 2078 3.083997 ATCAGGGACAGGGACGCC 61.084 66.667 0.00 0.00 0.00 5.68
1315 2079 2.187946 CATCAGGGACAGGGACGC 59.812 66.667 0.00 0.00 0.00 5.19
1316 2080 1.903877 AAGCATCAGGGACAGGGACG 61.904 60.000 0.00 0.00 0.00 4.79
1317 2081 0.393537 CAAGCATCAGGGACAGGGAC 60.394 60.000 0.00 0.00 0.00 4.46
1318 2082 0.547471 TCAAGCATCAGGGACAGGGA 60.547 55.000 0.00 0.00 0.00 4.20
1319 2083 0.393537 GTCAAGCATCAGGGACAGGG 60.394 60.000 0.00 0.00 0.00 4.45
1320 2084 0.393537 GGTCAAGCATCAGGGACAGG 60.394 60.000 0.00 0.00 32.00 4.00
1321 2085 0.393537 GGGTCAAGCATCAGGGACAG 60.394 60.000 0.00 0.00 32.00 3.51
1322 2086 1.133181 TGGGTCAAGCATCAGGGACA 61.133 55.000 0.00 0.00 32.00 4.02
1323 2087 0.038166 TTGGGTCAAGCATCAGGGAC 59.962 55.000 0.00 0.00 0.00 4.46
1324 2088 0.329261 CTTGGGTCAAGCATCAGGGA 59.671 55.000 0.00 0.00 34.63 4.20
1325 2089 0.038744 ACTTGGGTCAAGCATCAGGG 59.961 55.000 7.48 0.00 44.43 4.45
1326 2090 1.457346 GACTTGGGTCAAGCATCAGG 58.543 55.000 7.48 0.00 44.43 3.86
1327 2091 1.081892 CGACTTGGGTCAAGCATCAG 58.918 55.000 7.48 0.00 44.43 2.90
1328 2092 0.396435 ACGACTTGGGTCAAGCATCA 59.604 50.000 7.48 0.00 44.43 3.07
1329 2093 1.523758 AACGACTTGGGTCAAGCATC 58.476 50.000 7.48 0.00 44.43 3.91
1330 2094 1.981256 AAACGACTTGGGTCAAGCAT 58.019 45.000 7.48 0.00 44.43 3.79
1331 2095 2.215196 GTAAACGACTTGGGTCAAGCA 58.785 47.619 7.48 0.00 44.43 3.91
1332 2096 1.534163 GGTAAACGACTTGGGTCAAGC 59.466 52.381 7.48 1.08 44.43 4.01
1333 2097 2.806244 CTGGTAAACGACTTGGGTCAAG 59.194 50.000 6.15 6.15 45.85 3.02
1334 2098 2.485835 CCTGGTAAACGACTTGGGTCAA 60.486 50.000 0.00 0.00 42.21 3.18
1335 2099 1.071071 CCTGGTAAACGACTTGGGTCA 59.929 52.381 0.00 0.00 42.21 4.02
1336 2100 1.345415 TCCTGGTAAACGACTTGGGTC 59.655 52.381 0.00 0.00 38.97 4.46
1337 2101 1.071228 GTCCTGGTAAACGACTTGGGT 59.929 52.381 0.00 0.00 0.00 4.51
1338 2102 1.609841 GGTCCTGGTAAACGACTTGGG 60.610 57.143 0.00 0.00 0.00 4.12
1339 2103 1.804601 GGTCCTGGTAAACGACTTGG 58.195 55.000 0.00 0.00 0.00 3.61
1340 2104 1.269936 ACGGTCCTGGTAAACGACTTG 60.270 52.381 0.00 0.00 0.00 3.16
1341 2105 1.043022 ACGGTCCTGGTAAACGACTT 58.957 50.000 0.00 0.00 0.00 3.01
1342 2106 1.043022 AACGGTCCTGGTAAACGACT 58.957 50.000 0.00 0.00 0.00 4.18
1343 2107 2.288152 TGTAACGGTCCTGGTAAACGAC 60.288 50.000 0.00 0.00 0.00 4.34
1344 2108 1.959985 TGTAACGGTCCTGGTAAACGA 59.040 47.619 0.00 0.00 0.00 3.85
1345 2109 2.437200 TGTAACGGTCCTGGTAAACG 57.563 50.000 0.00 0.00 0.00 3.60
1346 2110 3.667360 ACATGTAACGGTCCTGGTAAAC 58.333 45.455 0.00 0.00 0.00 2.01
1347 2111 3.929094 GACATGTAACGGTCCTGGTAAA 58.071 45.455 0.00 0.00 0.00 2.01
1348 2112 3.598019 GACATGTAACGGTCCTGGTAA 57.402 47.619 0.00 0.00 0.00 2.85
1355 2119 2.024176 ATGCTGGACATGTAACGGTC 57.976 50.000 0.00 0.00 37.70 4.79
1364 2128 0.679002 GCACCTCACATGCTGGACAT 60.679 55.000 6.28 0.00 40.08 3.06
1365 2129 1.302752 GCACCTCACATGCTGGACA 60.303 57.895 6.28 0.00 40.08 4.02
1366 2130 2.393768 CGCACCTCACATGCTGGAC 61.394 63.158 6.28 0.00 41.10 4.02
1367 2131 2.046988 CGCACCTCACATGCTGGA 60.047 61.111 6.28 0.00 41.10 3.86
1368 2132 3.129502 CCGCACCTCACATGCTGG 61.130 66.667 0.00 0.00 41.10 4.85
1369 2133 1.518056 AAACCGCACCTCACATGCTG 61.518 55.000 0.00 0.00 41.10 4.41
1370 2134 1.228245 AAACCGCACCTCACATGCT 60.228 52.632 0.00 0.00 41.10 3.79
1371 2135 1.210155 GAAACCGCACCTCACATGC 59.790 57.895 0.00 0.00 39.81 4.06
1372 2136 0.238289 GTGAAACCGCACCTCACATG 59.762 55.000 0.00 0.00 39.42 3.21
1373 2137 0.179032 TGTGAAACCGCACCTCACAT 60.179 50.000 0.16 0.00 43.36 3.21
1374 2138 1.222113 TGTGAAACCGCACCTCACA 59.778 52.632 0.16 0.16 45.39 3.58
1375 2139 1.732259 CTATGTGAAACCGCACCTCAC 59.268 52.381 0.00 0.00 39.93 3.51
1376 2140 1.943968 GCTATGTGAAACCGCACCTCA 60.944 52.381 0.00 0.00 37.99 3.86
1377 2141 0.727398 GCTATGTGAAACCGCACCTC 59.273 55.000 0.00 0.00 37.99 3.85
1378 2142 0.676782 GGCTATGTGAAACCGCACCT 60.677 55.000 0.00 0.00 37.99 4.00
1379 2143 1.654023 GGGCTATGTGAAACCGCACC 61.654 60.000 0.00 0.00 37.99 5.01
1380 2144 1.800681 GGGCTATGTGAAACCGCAC 59.199 57.895 0.00 0.00 39.22 5.34
1381 2145 1.743623 CGGGCTATGTGAAACCGCA 60.744 57.895 0.00 0.00 37.93 5.69
1382 2146 3.098555 CGGGCTATGTGAAACCGC 58.901 61.111 0.00 0.00 37.93 5.68
1383 2147 2.594403 GTCACGGGCTATGTGAAACCG 61.594 57.143 8.82 0.00 46.99 4.44
1384 2148 1.084289 GTCACGGGCTATGTGAAACC 58.916 55.000 8.82 0.00 46.99 3.27
1385 2149 1.084289 GGTCACGGGCTATGTGAAAC 58.916 55.000 8.82 3.45 46.99 2.78
1386 2150 0.390603 CGGTCACGGGCTATGTGAAA 60.391 55.000 8.82 0.00 46.99 2.69
1387 2151 1.216977 CGGTCACGGGCTATGTGAA 59.783 57.895 8.82 0.00 46.99 3.18
1388 2152 1.940883 GACGGTCACGGGCTATGTGA 61.941 60.000 2.62 4.15 46.48 3.58
1389 2153 1.518572 GACGGTCACGGGCTATGTG 60.519 63.158 2.62 0.00 46.48 3.21
1390 2154 2.718073 GGACGGTCACGGGCTATGT 61.718 63.158 10.76 0.00 46.48 2.29
1391 2155 2.106332 GGACGGTCACGGGCTATG 59.894 66.667 10.76 0.00 46.48 2.23
1392 2156 3.152400 GGGACGGTCACGGGCTAT 61.152 66.667 10.76 0.00 46.48 2.97
1397 2161 4.065281 GTGAGGGGACGGTCACGG 62.065 72.222 10.76 0.00 46.48 4.94
1399 2163 1.526575 TAACGTGAGGGGACGGTCAC 61.527 60.000 10.76 6.08 43.84 3.67
1400 2164 1.228521 TAACGTGAGGGGACGGTCA 60.229 57.895 10.76 0.00 43.84 4.02
1401 2165 1.509923 CTAACGTGAGGGGACGGTC 59.490 63.158 0.00 0.00 43.84 4.79
1402 2166 1.980772 CCTAACGTGAGGGGACGGT 60.981 63.158 11.67 0.00 43.84 4.83
1403 2167 2.890371 CCTAACGTGAGGGGACGG 59.110 66.667 11.67 0.00 43.84 4.79
1409 2173 4.439968 GGATAGAAAACCCTAACGTGAGG 58.560 47.826 12.63 12.63 36.23 3.86
1410 2174 4.439968 GGGATAGAAAACCCTAACGTGAG 58.560 47.826 0.00 0.00 42.56 3.51
1411 2175 3.198417 GGGGATAGAAAACCCTAACGTGA 59.802 47.826 0.00 0.00 44.97 4.35
1412 2176 3.538591 GGGGATAGAAAACCCTAACGTG 58.461 50.000 0.00 0.00 44.97 4.49
1413 2177 3.920231 GGGGATAGAAAACCCTAACGT 57.080 47.619 0.00 0.00 44.97 3.99
1419 2183 1.558294 ACGTGAGGGGATAGAAAACCC 59.442 52.381 0.00 0.00 45.06 4.11
1420 2184 3.345508 AACGTGAGGGGATAGAAAACC 57.654 47.619 0.00 0.00 0.00 3.27
1421 2185 4.439968 CCTAACGTGAGGGGATAGAAAAC 58.560 47.826 11.67 0.00 32.39 2.43
1422 2186 4.748277 CCTAACGTGAGGGGATAGAAAA 57.252 45.455 11.67 0.00 32.39 2.29
1544 2310 2.409651 CCTAGCGTCTCCGTCAGC 59.590 66.667 0.00 0.00 36.15 4.26
1549 2315 2.783288 GGGTTCCCTAGCGTCTCCG 61.783 68.421 0.00 0.00 37.07 4.63
1585 2351 2.457366 TCTCTTGCCCGAAGAAAGAC 57.543 50.000 0.00 0.00 40.33 3.01
1599 2367 5.936956 GGATCTGACATCTGTTGTTTCTCTT 59.063 40.000 0.00 0.00 39.18 2.85
1870 2638 2.614481 GCACGAGAATTGGAGGGTGTAA 60.614 50.000 0.00 0.00 0.00 2.41
1924 2696 3.090765 CCCTTGAAGGTCCAGGGG 58.909 66.667 10.82 0.00 45.31 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.