Multiple sequence alignment - TraesCS3D01G387500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G387500 chr3D 100.000 9109 0 0 1 9109 502886392 502895500 0.000000e+00 16822.0
1 TraesCS3D01G387500 chr3D 84.746 177 26 1 3375 3551 611967337 611967162 9.400000e-40 176.0
2 TraesCS3D01G387500 chr3D 81.818 176 26 5 3371 3543 361161500 361161328 9.530000e-30 143.0
3 TraesCS3D01G387500 chr3D 85.577 104 13 2 7899 8002 27552607 27552506 3.480000e-19 108.0
4 TraesCS3D01G387500 chr3D 97.727 44 1 0 3266 3309 502889612 502889655 9.810000e-10 76.8
5 TraesCS3D01G387500 chr3D 97.727 44 1 0 3221 3264 502889657 502889700 9.810000e-10 76.8
6 TraesCS3D01G387500 chr3D 100.000 36 0 0 7952 7987 15686869 15686834 5.900000e-07 67.6
7 TraesCS3D01G387500 chr3D 97.143 35 1 0 6975 7009 452487876 452487910 9.880000e-05 60.2
8 TraesCS3D01G387500 chr3B 96.425 3748 93 20 4426 8150 663975665 663979394 0.000000e+00 6141.0
9 TraesCS3D01G387500 chr3B 95.437 2564 66 16 763 3287 663970378 663972929 0.000000e+00 4039.0
10 TraesCS3D01G387500 chr3B 97.672 988 17 3 3410 4391 663972930 663973917 0.000000e+00 1692.0
11 TraesCS3D01G387500 chr3B 87.410 977 62 16 1 950 663957579 663958521 0.000000e+00 1066.0
12 TraesCS3D01G387500 chr3B 94.545 495 22 4 8226 8718 663979393 663979884 0.000000e+00 760.0
13 TraesCS3D01G387500 chr3B 91.441 222 9 3 8779 9000 663979886 663980097 6.920000e-76 296.0
14 TraesCS3D01G387500 chr3B 89.305 187 17 3 6795 6980 627209939 627210123 1.980000e-56 231.0
15 TraesCS3D01G387500 chr3B 98.667 75 1 0 447 521 663969963 663970037 5.740000e-27 134.0
16 TraesCS3D01G387500 chr3B 93.671 79 5 0 3300 3378 663972991 663973069 1.610000e-22 119.0
17 TraesCS3D01G387500 chr3B 87.342 79 10 0 3300 3378 783876028 783876106 3.500000e-14 91.6
18 TraesCS3D01G387500 chr3B 95.238 42 0 2 409 448 663965928 663965969 2.120000e-06 65.8
19 TraesCS3D01G387500 chr6A 93.098 3347 172 29 3471 6789 584683132 584679817 0.000000e+00 4846.0
20 TraesCS3D01G387500 chr6A 95.025 804 29 7 7100 7898 584679791 584678994 0.000000e+00 1253.0
21 TraesCS3D01G387500 chr6A 85.879 956 80 24 1001 1930 584686811 584685885 0.000000e+00 966.0
22 TraesCS3D01G387500 chr6A 90.909 583 42 8 2181 2756 584684141 584683563 0.000000e+00 773.0
23 TraesCS3D01G387500 chr6A 90.754 411 30 3 2863 3267 584683528 584683120 8.050000e-150 542.0
24 TraesCS3D01G387500 chr6A 89.826 403 29 6 8226 8621 584678801 584678404 2.930000e-139 507.0
25 TraesCS3D01G387500 chr6A 97.475 198 4 1 1913 2110 584685369 584685173 4.070000e-88 337.0
26 TraesCS3D01G387500 chr6A 98.261 115 2 0 3264 3378 584683168 584683054 1.550000e-47 202.0
27 TraesCS3D01G387500 chr6A 90.217 92 7 1 8149 8238 3758952 3758861 1.610000e-22 119.0
28 TraesCS3D01G387500 chr6A 86.567 67 5 4 7927 7991 559863310 559863246 4.560000e-08 71.3
29 TraesCS3D01G387500 chr6D 92.955 3350 172 29 3471 6789 436461736 436458420 0.000000e+00 4820.0
30 TraesCS3D01G387500 chr6D 92.713 1139 59 14 7017 8150 436458426 436457307 0.000000e+00 1622.0
31 TraesCS3D01G387500 chr6D 85.774 956 77 26 1001 1930 436465454 436464532 0.000000e+00 957.0
32 TraesCS3D01G387500 chr6D 90.582 584 42 8 2181 2756 436462745 436462167 0.000000e+00 761.0
33 TraesCS3D01G387500 chr6D 90.511 411 31 3 2863 3267 436462132 436461724 3.740000e-148 536.0
34 TraesCS3D01G387500 chr6D 89.356 404 32 8 8226 8621 436457308 436456908 1.770000e-136 497.0
35 TraesCS3D01G387500 chr6D 95.960 198 7 1 1913 2110 436464028 436463832 4.100000e-83 320.0
36 TraesCS3D01G387500 chr6D 88.776 196 19 3 6789 6983 304115815 304115622 4.250000e-58 237.0
37 TraesCS3D01G387500 chr6D 96.581 117 2 1 3264 3378 436461772 436461656 9.330000e-45 193.0
38 TraesCS3D01G387500 chr6D 92.553 94 6 1 6891 6983 303623425 303623332 5.740000e-27 134.0
39 TraesCS3D01G387500 chr6D 83.942 137 19 3 3390 3525 209933282 209933148 2.670000e-25 128.0
40 TraesCS3D01G387500 chr6D 93.103 87 2 2 8149 8231 428262354 428262268 3.450000e-24 124.0
41 TraesCS3D01G387500 chr6D 88.660 97 3 3 8139 8227 411828900 411828804 2.690000e-20 111.0
42 TraesCS3D01G387500 chr6D 90.805 87 1 2 8148 8227 160314784 160314870 9.670000e-20 110.0
43 TraesCS3D01G387500 chr6D 90.588 85 5 3 8147 8228 428262271 428262355 9.670000e-20 110.0
44 TraesCS3D01G387500 chr6D 93.443 61 4 0 6790 6850 36634873 36634933 3.500000e-14 91.6
45 TraesCS3D01G387500 chr6D 93.443 61 4 0 6790 6850 36659780 36659840 3.500000e-14 91.6
46 TraesCS3D01G387500 chr6B 93.406 1835 89 12 4975 6789 659642999 659641177 0.000000e+00 2689.0
47 TraesCS3D01G387500 chr6B 92.060 1524 82 18 3471 4985 659644647 659643154 0.000000e+00 2108.0
48 TraesCS3D01G387500 chr6B 90.223 1166 68 18 7011 8150 659641190 659640045 0.000000e+00 1480.0
49 TraesCS3D01G387500 chr6B 85.356 956 81 24 1001 1930 659648312 659647390 0.000000e+00 935.0
50 TraesCS3D01G387500 chr6B 90.566 583 42 9 2181 2756 659645652 659645076 0.000000e+00 760.0
51 TraesCS3D01G387500 chr6B 89.051 411 33 5 2863 3266 659645041 659644636 4.910000e-137 499.0
52 TraesCS3D01G387500 chr6B 96.465 198 6 1 1913 2110 659646879 659646683 8.820000e-85 326.0
53 TraesCS3D01G387500 chr6B 90.783 217 18 1 8226 8442 659640046 659639832 1.160000e-73 289.0
54 TraesCS3D01G387500 chr6B 97.391 115 3 0 3264 3378 659644683 659644569 7.220000e-46 196.0
55 TraesCS3D01G387500 chr6B 83.212 137 21 2 3390 3525 399769134 399768999 3.450000e-24 124.0
56 TraesCS3D01G387500 chr6B 88.608 79 9 0 3300 3378 507678275 507678353 7.530000e-16 97.1
57 TraesCS3D01G387500 chr6B 87.342 79 8 2 3300 3378 188141765 188141841 1.260000e-13 89.8
58 TraesCS3D01G387500 chr2D 86.442 1512 115 25 5317 6787 225270051 225271513 0.000000e+00 1574.0
59 TraesCS3D01G387500 chr2D 87.063 1144 104 25 7017 8152 225271509 225272616 0.000000e+00 1253.0
60 TraesCS3D01G387500 chr2D 88.757 338 35 2 8230 8565 225272616 225272952 2.370000e-110 411.0
61 TraesCS3D01G387500 chr2D 91.667 48 1 3 7914 7961 265947856 265947812 7.640000e-06 63.9
62 TraesCS3D01G387500 chrUn 88.581 867 60 15 1853 2696 7374950 7375800 0.000000e+00 1016.0
63 TraesCS3D01G387500 chrUn 90.185 540 34 8 2170 2696 7332259 7332792 0.000000e+00 686.0
64 TraesCS3D01G387500 chrUn 90.185 540 34 8 2170 2696 7373096 7373629 0.000000e+00 686.0
65 TraesCS3D01G387500 chrUn 90.185 540 34 8 2170 2696 368178187 368177654 0.000000e+00 686.0
66 TraesCS3D01G387500 chrUn 88.956 498 49 3 4459 4956 7333247 7333738 2.170000e-170 610.0
67 TraesCS3D01G387500 chrUn 88.956 498 49 3 4459 4956 7374084 7374575 2.170000e-170 610.0
68 TraesCS3D01G387500 chrUn 88.956 498 49 3 4459 4956 7376255 7376746 2.170000e-170 610.0
69 TraesCS3D01G387500 chrUn 88.956 498 49 3 4459 4956 368177199 368176708 2.170000e-170 610.0
70 TraesCS3D01G387500 chrUn 86.557 424 46 4 4058 4470 7332789 7333212 3.000000e-124 457.0
71 TraesCS3D01G387500 chrUn 86.557 424 46 4 4058 4470 7373626 7374049 3.000000e-124 457.0
72 TraesCS3D01G387500 chrUn 86.557 424 46 4 4058 4470 7375797 7376220 3.000000e-124 457.0
73 TraesCS3D01G387500 chrUn 86.417 427 47 4 4058 4473 368177657 368177231 3.000000e-124 457.0
74 TraesCS3D01G387500 chrUn 86.732 407 45 6 1482 1883 316821128 316820726 2.330000e-120 444.0
75 TraesCS3D01G387500 chrUn 89.347 291 20 5 1853 2134 280372105 280372393 1.120000e-93 355.0
76 TraesCS3D01G387500 chrUn 89.347 291 20 5 1853 2134 280414210 280414498 1.120000e-93 355.0
77 TraesCS3D01G387500 chrUn 89.333 225 20 3 1659 1883 328624011 328624231 6.960000e-71 279.0
78 TraesCS3D01G387500 chrUn 93.678 174 11 0 1897 2070 316820628 316820455 2.520000e-65 261.0
79 TraesCS3D01G387500 chrUn 96.203 79 2 1 8149 8227 23109988 23110065 2.670000e-25 128.0
80 TraesCS3D01G387500 chrUn 92.771 83 4 2 8146 8227 23110069 23109988 1.610000e-22 119.0
81 TraesCS3D01G387500 chrUn 90.805 87 8 0 8148 8234 24265273 24265359 5.780000e-22 117.0
82 TraesCS3D01G387500 chrUn 92.500 80 5 1 8149 8227 27556382 27556461 7.480000e-21 113.0
83 TraesCS3D01G387500 chrUn 90.805 87 1 1 8149 8228 42362449 42362363 9.670000e-20 110.0
84 TraesCS3D01G387500 chrUn 89.286 84 7 1 8146 8227 252684457 252684540 4.500000e-18 104.0
85 TraesCS3D01G387500 chrUn 89.157 83 8 1 8146 8227 162557548 162557630 1.620000e-17 102.0
86 TraesCS3D01G387500 chrUn 89.024 82 4 3 8149 8227 27556461 27556382 7.530000e-16 97.1
87 TraesCS3D01G387500 chrUn 87.059 85 9 2 8145 8227 287061068 287061152 2.710000e-15 95.3
88 TraesCS3D01G387500 chrUn 89.394 66 6 1 7903 7968 263815737 263815801 2.110000e-11 82.4
89 TraesCS3D01G387500 chr1B 88.581 867 60 15 1853 2696 560316432 560315582 0.000000e+00 1016.0
90 TraesCS3D01G387500 chr1B 88.956 498 49 3 4459 4956 560315127 560314636 2.170000e-170 610.0
91 TraesCS3D01G387500 chr1B 86.417 427 47 4 4058 4473 560315585 560315159 3.000000e-124 457.0
92 TraesCS3D01G387500 chr1B 86.732 407 45 6 1482 1883 560334189 560333787 2.330000e-120 444.0
93 TraesCS3D01G387500 chr1B 86.022 186 24 2 6799 6983 123953561 123953377 2.010000e-46 198.0
94 TraesCS3D01G387500 chr1B 89.474 76 7 1 3418 3493 36285356 36285282 2.710000e-15 95.3
95 TraesCS3D01G387500 chr7D 85.885 418 27 20 537 948 188293905 188293514 5.090000e-112 416.0
96 TraesCS3D01G387500 chr7D 86.245 269 19 9 1673 1930 617659256 617659517 9.010000e-70 276.0
97 TraesCS3D01G387500 chr7D 85.922 206 20 6 1249 1452 617658740 617658938 2.580000e-50 211.0
98 TraesCS3D01G387500 chr7D 86.957 184 20 4 6802 6983 611352514 611352695 4.310000e-48 204.0
99 TraesCS3D01G387500 chr7D 93.458 107 5 2 2749 2854 190163220 190163115 3.400000e-34 158.0
100 TraesCS3D01G387500 chr7D 95.000 80 1 2 8148 8227 523128772 523128848 1.240000e-23 122.0
101 TraesCS3D01G387500 chr7D 91.954 87 6 1 8149 8234 90555422 90555336 4.470000e-23 121.0
102 TraesCS3D01G387500 chr7D 90.426 94 5 3 8149 8242 523128848 523128759 4.470000e-23 121.0
103 TraesCS3D01G387500 chr7D 83.333 96 11 3 3461 3554 89276822 89276730 5.860000e-12 84.2
104 TraesCS3D01G387500 chr7A 86.643 277 12 8 697 948 195827020 195827296 5.380000e-72 283.0
105 TraesCS3D01G387500 chr7A 83.548 310 28 11 1634 1930 711461070 711461369 1.510000e-67 268.0
106 TraesCS3D01G387500 chr7A 87.831 189 21 2 6793 6979 520508120 520507932 4.280000e-53 220.0
107 TraesCS3D01G387500 chr7A 95.181 83 3 1 8146 8227 66934520 66934602 7.420000e-26 130.0
108 TraesCS3D01G387500 chr4A 89.730 185 18 1 6799 6983 595044731 595044914 1.530000e-57 235.0
109 TraesCS3D01G387500 chr4A 92.035 113 6 3 2750 2860 133061389 133061500 1.220000e-33 156.0
110 TraesCS3D01G387500 chr4A 84.211 152 22 2 6801 6951 58572679 58572829 7.370000e-31 147.0
111 TraesCS3D01G387500 chr4A 92.857 84 6 0 8144 8227 707045424 707045507 1.240000e-23 122.0
112 TraesCS3D01G387500 chr2B 87.879 198 23 1 6787 6983 45740696 45740893 1.980000e-56 231.0
113 TraesCS3D01G387500 chr5A 87.113 194 20 5 6793 6983 364680240 364680049 1.990000e-51 215.0
114 TraesCS3D01G387500 chr5A 89.333 75 7 1 3299 3373 566629557 566629630 9.740000e-15 93.5
115 TraesCS3D01G387500 chr5A 88.710 62 6 1 3496 3557 422878236 422878296 3.530000e-09 75.0
116 TraesCS3D01G387500 chr5A 97.297 37 1 0 6974 7010 506149843 506149879 7.640000e-06 63.9
117 TraesCS3D01G387500 chr5B 86.224 196 24 3 6789 6983 313143326 313143133 9.270000e-50 209.0
118 TraesCS3D01G387500 chr5B 83.333 198 29 4 6788 6983 559760315 559760510 7.270000e-41 180.0
119 TraesCS3D01G387500 chr5B 90.598 117 9 2 2749 2863 689895815 689895699 4.400000e-33 154.0
120 TraesCS3D01G387500 chr5B 82.692 156 27 0 6828 6983 277030199 277030354 1.230000e-28 139.0
121 TraesCS3D01G387500 chr5B 81.111 180 27 7 6784 6959 369608684 369608508 4.440000e-28 137.0
122 TraesCS3D01G387500 chr5B 92.593 81 4 1 8147 8227 27509482 27509404 2.080000e-21 115.0
123 TraesCS3D01G387500 chr5B 79.000 100 16 4 7914 8010 535133388 535133291 7.640000e-06 63.9
124 TraesCS3D01G387500 chr1D 87.097 186 22 2 6799 6983 78967054 78966870 9.270000e-50 209.0
125 TraesCS3D01G387500 chr1D 94.231 104 4 2 2754 2855 412079062 412079165 3.400000e-34 158.0
126 TraesCS3D01G387500 chr1D 95.000 80 1 2 8149 8228 464312359 464312435 1.240000e-23 122.0
127 TraesCS3D01G387500 chr1D 94.937 79 1 2 8149 8227 464312434 464312359 4.470000e-23 121.0
128 TraesCS3D01G387500 chr1D 79.661 177 29 7 6790 6962 492612926 492613099 4.470000e-23 121.0
129 TraesCS3D01G387500 chr1D 84.211 114 12 4 6826 6938 493478469 493478361 1.250000e-18 106.0
130 TraesCS3D01G387500 chr1D 88.608 79 9 0 3300 3378 62141402 62141480 7.530000e-16 97.1
131 TraesCS3D01G387500 chr5D 86.957 184 21 3 6801 6983 276291723 276291542 4.310000e-48 204.0
132 TraesCS3D01G387500 chr5D 86.631 187 22 3 6799 6983 457659274 457659459 4.310000e-48 204.0
133 TraesCS3D01G387500 chr5D 83.854 192 26 5 6788 6976 512218238 512218427 2.610000e-40 178.0
134 TraesCS3D01G387500 chr5D 93.913 115 3 4 2746 2859 228446956 228447067 4.370000e-38 171.0
135 TraesCS3D01G387500 chr5D 97.297 37 1 0 6974 7010 400911239 400911275 7.640000e-06 63.9
136 TraesCS3D01G387500 chr1A 84.653 202 23 4 6790 6983 363692685 363692886 2.600000e-45 195.0
137 TraesCS3D01G387500 chr1A 81.865 193 33 2 6791 6982 494453078 494452887 2.630000e-35 161.0
138 TraesCS3D01G387500 chr1A 94.175 103 5 1 2754 2855 508633024 508633126 1.220000e-33 156.0
139 TraesCS3D01G387500 chr1A 85.075 134 16 4 6801 6932 96487408 96487539 5.740000e-27 134.0
140 TraesCS3D01G387500 chr1A 89.011 91 5 1 8149 8234 228866007 228865917 3.480000e-19 108.0
141 TraesCS3D01G387500 chr1A 85.870 92 11 2 6881 6971 572886911 572887001 7.530000e-16 97.1
142 TraesCS3D01G387500 chr1A 100.000 38 0 0 6974 7011 591095990 591096027 4.560000e-08 71.3
143 TraesCS3D01G387500 chr1A 80.769 78 14 1 7818 7894 14081393 14081316 9.880000e-05 60.2
144 TraesCS3D01G387500 chr4D 83.756 197 30 2 6788 6983 334113547 334113352 1.560000e-42 185.0
145 TraesCS3D01G387500 chr4D 94.253 87 4 1 8142 8227 115204018 115204104 2.060000e-26 132.0
146 TraesCS3D01G387500 chr4D 92.857 84 5 1 8148 8230 115204105 115204022 4.470000e-23 121.0
147 TraesCS3D01G387500 chr4D 82.828 99 13 3 7805 7900 396438260 396438357 1.630000e-12 86.1
148 TraesCS3D01G387500 chr4D 79.661 118 22 2 6867 6982 305973446 305973563 5.860000e-12 84.2
149 TraesCS3D01G387500 chr7B 92.593 108 6 2 2753 2859 171060387 171060281 4.400000e-33 154.0
150 TraesCS3D01G387500 chr7B 94.937 79 3 1 8149 8227 234058839 234058916 1.240000e-23 122.0
151 TraesCS3D01G387500 chr7B 97.727 44 1 0 6973 7016 531604909 531604866 9.810000e-10 76.8
152 TraesCS3D01G387500 chr7B 91.667 48 1 3 7914 7961 314455120 314455076 7.640000e-06 63.9
153 TraesCS3D01G387500 chr4B 90.435 115 7 4 2744 2856 167348102 167347990 2.050000e-31 148.0
154 TraesCS3D01G387500 chr4B 89.474 95 8 2 8143 8235 90729624 90729530 1.610000e-22 119.0
155 TraesCS3D01G387500 chr3A 96.386 83 2 1 8146 8227 723495419 723495501 1.600000e-27 135.0
156 TraesCS3D01G387500 chr3A 89.394 66 6 1 7903 7968 533619735 533619799 2.110000e-11 82.4
157 TraesCS3D01G387500 chr3A 93.023 43 3 0 6974 7016 586793043 586793001 7.640000e-06 63.9
158 TraesCS3D01G387500 chr2A 97.500 80 1 1 8149 8227 684468627 684468548 1.600000e-27 135.0
159 TraesCS3D01G387500 chr2A 97.500 80 1 1 8149 8227 767590279 767590200 1.600000e-27 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G387500 chr3D 502886392 502895500 9108 False 16822.000000 16822 100.000000 1 9109 1 chr3D.!!$F2 9108
1 TraesCS3D01G387500 chr3B 663965928 663980097 14169 False 1655.850000 6141 95.387000 409 9000 8 chr3B.!!$F4 8591
2 TraesCS3D01G387500 chr3B 663957579 663958521 942 False 1066.000000 1066 87.410000 1 950 1 chr3B.!!$F2 949
3 TraesCS3D01G387500 chr6A 584678404 584686811 8407 True 1178.250000 4846 92.653375 1001 8621 8 chr6A.!!$R3 7620
4 TraesCS3D01G387500 chr6D 436456908 436465454 8546 True 1213.250000 4820 91.804000 1001 8621 8 chr6D.!!$R6 7620
5 TraesCS3D01G387500 chr6B 659639832 659648312 8480 True 1031.333333 2689 91.700111 1001 8442 9 chr6B.!!$R2 7441
6 TraesCS3D01G387500 chr2D 225270051 225272952 2901 False 1079.333333 1574 87.420667 5317 8565 3 chr2D.!!$F1 3248
7 TraesCS3D01G387500 chrUn 7373096 7376746 3650 False 639.333333 1016 88.298667 1853 4956 6 chrUn.!!$F12 3103
8 TraesCS3D01G387500 chrUn 7332259 7333738 1479 False 584.333333 686 88.566000 2170 4956 3 chrUn.!!$F11 2786
9 TraesCS3D01G387500 chrUn 368176708 368178187 1479 True 584.333333 686 88.519333 2170 4956 3 chrUn.!!$R5 2786
10 TraesCS3D01G387500 chrUn 316820455 316821128 673 True 352.500000 444 90.205000 1482 2070 2 chrUn.!!$R4 588
11 TraesCS3D01G387500 chr1B 560314636 560316432 1796 True 694.333333 1016 87.984667 1853 4956 3 chr1B.!!$R4 3103
12 TraesCS3D01G387500 chr7D 617658740 617659517 777 False 243.500000 276 86.083500 1249 1930 2 chr7D.!!$F3 681

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
665 4673 0.036875 CCAGTTCCCTTCCAGGACAC 59.963 60.0 0.00 0.0 37.67 3.67 F
666 4674 0.764890 CAGTTCCCTTCCAGGACACA 59.235 55.0 0.00 0.0 37.67 3.72 F
667 4675 0.765510 AGTTCCCTTCCAGGACACAC 59.234 55.0 0.00 0.0 37.67 3.82 F
863 4987 0.820871 CTCGCTGGGAGAAGCTACTT 59.179 55.0 15.95 0.0 46.23 2.24 F
2515 8624 2.027561 CGGTAAGTCTTCCATGAACCCA 60.028 50.0 0.00 0.0 0.00 4.51 F
3329 9448 0.251341 ATGCACCAACCAGTTCTCCC 60.251 55.0 0.00 0.0 0.00 4.30 F
3358 9477 0.040204 AGCTGATGGGAAAAGGTGGG 59.960 55.0 0.00 0.0 0.00 4.61 F
3364 9483 0.324275 TGGGAAAAGGTGGGCTATGC 60.324 55.0 0.00 0.0 0.00 3.14 F
3365 9484 0.324275 GGGAAAAGGTGGGCTATGCA 60.324 55.0 0.00 0.0 0.00 3.96 F
4990 13060 0.394899 CAATGCCTCCCACCTCCTTC 60.395 60.0 0.00 0.0 0.00 3.46 F
6898 15024 0.317436 TTTAGTTTGCAAGCACGGCG 60.317 50.0 16.04 4.8 0.00 6.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1632 5804 2.069273 ACACACGCTGCAACTAGAATC 58.931 47.619 0.00 0.0 0.00 2.52 R
1689 6122 2.091885 AGCTCAAAGAACAAGGTTGGGA 60.092 45.455 0.00 0.0 0.00 4.37 R
2291 8386 2.185004 ATACTCCAACGCAGCAAGTT 57.815 45.000 0.00 0.0 0.00 2.66 R
2762 8872 5.070685 AGTTGAGACACTTATTTTGGGACC 58.929 41.667 0.00 0.0 0.00 4.46 R
3339 9458 0.040204 CCCACCTTTTCCCATCAGCT 59.960 55.000 0.00 0.0 0.00 4.24 R
5115 13185 1.760613 TCGAACAACCAGACTTCCTGT 59.239 47.619 0.00 0.0 41.33 4.00 R
5133 13203 5.750067 CCTCAAATGGCAGGAAAATTATTCG 59.250 40.000 0.00 0.0 30.32 3.34 R
5414 13484 8.225603 TGGAAGGAAAACTATATTTCATGAGC 57.774 34.615 0.00 0.0 40.34 4.26 R
5508 13578 6.628844 GCAGAAAGTGGGCAGAAATATCAAAT 60.629 38.462 0.00 0.0 0.00 2.32 R
6926 15052 1.065551 GTTGGCGAGCATGGTAAATCC 59.934 52.381 0.00 0.0 0.00 3.01 R
8736 16923 0.320374 AACCTCGACATCGGCAAAGA 59.680 50.000 0.73 0.0 40.29 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 2.260481 GTTTTCTCCTCCGATGTCGTC 58.740 52.381 1.44 0.00 37.74 4.20
73 75 1.596727 GCCAGATCTGAAGTTCGATGC 59.403 52.381 24.62 11.31 0.00 3.91
77 79 1.590238 GATCTGAAGTTCGATGCCGTG 59.410 52.381 12.78 0.00 37.05 4.94
78 80 0.317160 TCTGAAGTTCGATGCCGTGT 59.683 50.000 0.00 0.00 37.05 4.49
111 114 1.949525 CGGGCGGATTCTTTCAATGAT 59.050 47.619 0.00 0.00 0.00 2.45
148 151 1.068474 CGAGCTACTTTGGTGGTTCG 58.932 55.000 4.77 4.77 46.26 3.95
152 155 3.547746 AGCTACTTTGGTGGTTCGAAAA 58.452 40.909 0.00 0.00 0.00 2.29
163 168 2.682856 TGGTTCGAAAAGCCATATCAGC 59.317 45.455 0.00 0.00 31.73 4.26
166 171 2.473816 TCGAAAAGCCATATCAGCGAG 58.526 47.619 0.00 0.00 34.64 5.03
170 175 2.540265 AAGCCATATCAGCGAGGAAG 57.460 50.000 0.00 0.00 34.64 3.46
198 203 2.028930 CGAGCTCAGGTAAAGAGGTGTT 60.029 50.000 15.40 0.00 43.27 3.32
199 204 3.555168 CGAGCTCAGGTAAAGAGGTGTTT 60.555 47.826 15.40 0.00 43.27 2.83
205 210 3.568430 CAGGTAAAGAGGTGTTTTGTCCC 59.432 47.826 0.00 0.00 0.00 4.46
206 211 2.889045 GGTAAAGAGGTGTTTTGTCCCC 59.111 50.000 0.00 0.00 0.00 4.81
310 315 8.668353 TGATTTTATTTTTCTGGATGAGAGTCG 58.332 33.333 0.00 0.00 30.18 4.18
317 322 3.698289 TCTGGATGAGAGTCGTTTAGGT 58.302 45.455 0.00 0.00 0.00 3.08
318 323 3.444034 TCTGGATGAGAGTCGTTTAGGTG 59.556 47.826 0.00 0.00 0.00 4.00
327 336 5.952033 AGAGTCGTTTAGGTGATAGTGTTC 58.048 41.667 0.00 0.00 0.00 3.18
340 349 6.073548 GGTGATAGTGTTCTGTTGTCTTTCTG 60.074 42.308 0.00 0.00 0.00 3.02
352 364 5.106317 TGTTGTCTTTCTGGTTTGTCAAGTC 60.106 40.000 0.00 0.00 0.00 3.01
362 374 4.202172 TGGTTTGTCAAGTCGATGTCTACA 60.202 41.667 0.00 0.00 0.00 2.74
364 376 5.163953 GGTTTGTCAAGTCGATGTCTACATG 60.164 44.000 0.00 0.00 36.57 3.21
380 392 7.303261 TGTCTACATGACTTGTACTTTACTCG 58.697 38.462 0.00 0.00 45.54 4.18
381 393 6.250951 GTCTACATGACTTGTACTTTACTCGC 59.749 42.308 0.00 0.00 42.21 5.03
402 414 3.485877 GCTGGTTTATGAATGAGACACGC 60.486 47.826 0.00 0.00 0.00 5.34
407 419 6.183360 TGGTTTATGAATGAGACACGCATTAC 60.183 38.462 0.00 0.00 34.31 1.89
408 420 6.037172 GGTTTATGAATGAGACACGCATTACT 59.963 38.462 0.00 0.00 34.31 2.24
411 423 8.710835 TTATGAATGAGACACGCATTACTAAA 57.289 30.769 0.00 0.00 34.31 1.85
412 424 7.609760 ATGAATGAGACACGCATTACTAAAA 57.390 32.000 0.00 0.00 34.31 1.52
474 4481 1.524355 CTCATTTAGAGGCGCACGATG 59.476 52.381 10.83 9.93 40.84 3.84
664 4672 1.133809 CCCAGTTCCCTTCCAGGACA 61.134 60.000 0.00 0.00 37.67 4.02
665 4673 0.036875 CCAGTTCCCTTCCAGGACAC 59.963 60.000 0.00 0.00 37.67 3.67
666 4674 0.764890 CAGTTCCCTTCCAGGACACA 59.235 55.000 0.00 0.00 37.67 3.72
667 4675 0.765510 AGTTCCCTTCCAGGACACAC 59.234 55.000 0.00 0.00 37.67 3.82
677 4685 2.430921 GGACACACCTCGACGCAG 60.431 66.667 0.00 0.00 35.41 5.18
678 4686 3.106407 GACACACCTCGACGCAGC 61.106 66.667 0.00 0.00 0.00 5.25
679 4687 3.841379 GACACACCTCGACGCAGCA 62.841 63.158 0.00 0.00 0.00 4.41
680 4688 2.433145 CACACCTCGACGCAGCAT 60.433 61.111 0.00 0.00 0.00 3.79
681 4689 2.125912 ACACCTCGACGCAGCATC 60.126 61.111 0.00 0.00 0.00 3.91
682 4690 2.887568 CACCTCGACGCAGCATCC 60.888 66.667 0.00 0.00 0.00 3.51
683 4691 3.071206 ACCTCGACGCAGCATCCT 61.071 61.111 0.00 0.00 0.00 3.24
684 4692 2.279120 CCTCGACGCAGCATCCTC 60.279 66.667 0.00 0.00 0.00 3.71
685 4693 2.491621 CTCGACGCAGCATCCTCA 59.508 61.111 0.00 0.00 0.00 3.86
686 4694 1.875813 CTCGACGCAGCATCCTCAC 60.876 63.158 0.00 0.00 0.00 3.51
748 4872 3.285371 GTGGTCACCTCGACGGAT 58.715 61.111 0.00 0.00 46.42 4.18
749 4873 1.139095 GTGGTCACCTCGACGGATC 59.861 63.158 0.00 0.00 46.42 3.36
750 4874 2.050350 TGGTCACCTCGACGGATCC 61.050 63.158 0.00 0.00 46.42 3.36
751 4875 2.783288 GGTCACCTCGACGGATCCC 61.783 68.421 6.06 0.00 46.42 3.85
761 4885 3.470888 CGGATCCCGCCTCAACCT 61.471 66.667 6.06 0.00 41.17 3.50
863 4987 0.820871 CTCGCTGGGAGAAGCTACTT 59.179 55.000 15.95 0.00 46.23 2.24
935 5059 6.029346 TGGAAGCTGAATTTGAGGATTTTC 57.971 37.500 0.00 0.00 0.00 2.29
946 5070 4.371624 TGAGGATTTTCAGAAGCTTGGA 57.628 40.909 2.10 0.00 0.00 3.53
1080 5216 3.374402 CCTGACTCCGACGCAGGT 61.374 66.667 10.16 0.00 43.25 4.00
1518 5668 5.898174 TGTGGTTAAGTATGATAGTGTCCG 58.102 41.667 0.00 0.00 0.00 4.79
1632 5804 4.928615 GGATCTGTCTGAAGTGAAGTTCTG 59.071 45.833 4.17 0.00 0.00 3.02
1689 6122 2.665649 TTCGTGATTACTGACGGCAT 57.334 45.000 0.00 0.00 36.23 4.40
1851 6293 5.995565 TTCTTTACTAGCTAGGAGTTGCA 57.004 39.130 24.35 0.00 0.00 4.08
2326 8428 5.734720 TGGAGTATTTCTCAACTGATGACC 58.265 41.667 0.00 0.00 44.40 4.02
2514 8623 2.235402 TCGGTAAGTCTTCCATGAACCC 59.765 50.000 0.00 0.00 0.00 4.11
2515 8624 2.027561 CGGTAAGTCTTCCATGAACCCA 60.028 50.000 0.00 0.00 0.00 4.51
2528 8637 8.570068 TTCCATGAACCCAAATTTACTAGTAC 57.430 34.615 0.91 0.00 0.00 2.73
2634 8743 5.305139 TGATTCAGTTCGATTGAGTACGA 57.695 39.130 0.00 0.00 36.75 3.43
2762 8872 6.636562 ACTGTGAACTATAATACTCCCTCG 57.363 41.667 0.00 0.00 0.00 4.63
2787 8897 6.040504 GGTCCCAAAATAAGTGTCTCAACTTT 59.959 38.462 0.00 0.00 40.77 2.66
2876 8986 2.664402 ATTGCTCCAGTTTCACCTGT 57.336 45.000 0.00 0.00 0.00 4.00
2901 9011 6.282199 GTGATCTCACAAGTAGTTTAGGGA 57.718 41.667 5.46 0.00 45.75 4.20
3027 9139 4.898829 TGTTATAATGGCAGTGACATGC 57.101 40.909 13.53 1.74 45.74 4.06
3045 9162 3.002038 TGCTGGACACATGCATCATAA 57.998 42.857 0.00 0.00 0.00 1.90
3078 9195 0.836606 TCACTTGTGAAGCCACCTGA 59.163 50.000 0.44 0.00 42.53 3.86
3098 9215 3.636300 TGAGGGTGAAAAGTGGATTGTTG 59.364 43.478 0.00 0.00 0.00 3.33
3115 9232 4.682778 TGTTGCAGTAGTTCTAGGTTGT 57.317 40.909 0.00 0.00 0.00 3.32
3117 9234 5.779922 TGTTGCAGTAGTTCTAGGTTGTAG 58.220 41.667 0.00 0.00 0.00 2.74
3255 9374 3.359033 TGCAGCTAAATGGAGCATCTTT 58.641 40.909 0.00 0.00 45.43 2.52
3293 9412 3.965292 CTGTCATGCAGCTAAATGGAG 57.035 47.619 7.71 2.24 38.52 3.86
3294 9413 2.019249 TGTCATGCAGCTAAATGGAGC 58.981 47.619 7.71 0.00 43.19 4.70
3295 9414 2.019249 GTCATGCAGCTAAATGGAGCA 58.981 47.619 7.71 1.92 45.43 4.26
3296 9415 2.621998 GTCATGCAGCTAAATGGAGCAT 59.378 45.455 7.71 4.13 45.43 3.79
3297 9416 2.882761 TCATGCAGCTAAATGGAGCATC 59.117 45.455 2.69 0.00 45.43 3.91
3298 9417 2.723322 TGCAGCTAAATGGAGCATCT 57.277 45.000 0.00 0.00 45.43 2.90
3299 9418 3.008835 TGCAGCTAAATGGAGCATCTT 57.991 42.857 0.00 0.00 45.43 2.40
3300 9419 2.686405 TGCAGCTAAATGGAGCATCTTG 59.314 45.455 0.00 0.00 45.43 3.02
3301 9420 2.686915 GCAGCTAAATGGAGCATCTTGT 59.313 45.455 2.23 0.00 45.43 3.16
3302 9421 3.879295 GCAGCTAAATGGAGCATCTTGTA 59.121 43.478 2.23 0.00 45.43 2.41
3303 9422 4.024218 GCAGCTAAATGGAGCATCTTGTAG 60.024 45.833 2.23 0.00 45.43 2.74
3304 9423 5.363101 CAGCTAAATGGAGCATCTTGTAGA 58.637 41.667 2.23 0.00 45.43 2.59
3305 9424 5.819379 CAGCTAAATGGAGCATCTTGTAGAA 59.181 40.000 2.23 0.00 45.43 2.10
3306 9425 6.485984 CAGCTAAATGGAGCATCTTGTAGAAT 59.514 38.462 2.23 0.00 45.43 2.40
3307 9426 7.013083 CAGCTAAATGGAGCATCTTGTAGAATT 59.987 37.037 2.23 0.00 45.43 2.17
3308 9427 7.013083 AGCTAAATGGAGCATCTTGTAGAATTG 59.987 37.037 2.23 0.00 45.43 2.32
3309 9428 7.012704 GCTAAATGGAGCATCTTGTAGAATTGA 59.987 37.037 0.00 0.00 42.36 2.57
3310 9429 7.707624 AAATGGAGCATCTTGTAGAATTGAA 57.292 32.000 0.00 0.00 33.73 2.69
3311 9430 7.893124 AATGGAGCATCTTGTAGAATTGAAT 57.107 32.000 0.00 0.00 33.73 2.57
3312 9431 6.688637 TGGAGCATCTTGTAGAATTGAATG 57.311 37.500 0.00 0.00 33.73 2.67
3313 9432 5.066893 TGGAGCATCTTGTAGAATTGAATGC 59.933 40.000 0.00 0.00 33.73 3.56
3314 9433 5.066893 GGAGCATCTTGTAGAATTGAATGCA 59.933 40.000 7.12 0.00 35.23 3.96
3315 9434 5.888105 AGCATCTTGTAGAATTGAATGCAC 58.112 37.500 7.12 0.00 35.23 4.57
3316 9435 5.039333 GCATCTTGTAGAATTGAATGCACC 58.961 41.667 0.00 0.00 33.25 5.01
3317 9436 5.393352 GCATCTTGTAGAATTGAATGCACCA 60.393 40.000 0.00 0.00 33.25 4.17
3318 9437 6.623486 CATCTTGTAGAATTGAATGCACCAA 58.377 36.000 5.91 5.91 0.00 3.67
3319 9438 6.012658 TCTTGTAGAATTGAATGCACCAAC 57.987 37.500 5.61 0.00 0.00 3.77
3320 9439 4.782019 TGTAGAATTGAATGCACCAACC 57.218 40.909 5.61 2.33 0.00 3.77
3321 9440 4.148079 TGTAGAATTGAATGCACCAACCA 58.852 39.130 5.61 0.00 0.00 3.67
3322 9441 3.947910 AGAATTGAATGCACCAACCAG 57.052 42.857 5.61 0.00 0.00 4.00
3323 9442 3.233507 AGAATTGAATGCACCAACCAGT 58.766 40.909 5.61 0.00 0.00 4.00
3324 9443 3.642848 AGAATTGAATGCACCAACCAGTT 59.357 39.130 5.61 0.00 0.00 3.16
3325 9444 3.665745 ATTGAATGCACCAACCAGTTC 57.334 42.857 5.61 0.00 0.00 3.01
3326 9445 2.363306 TGAATGCACCAACCAGTTCT 57.637 45.000 0.00 0.00 0.00 3.01
3327 9446 2.229792 TGAATGCACCAACCAGTTCTC 58.770 47.619 0.00 0.00 0.00 2.87
3328 9447 1.541588 GAATGCACCAACCAGTTCTCC 59.458 52.381 0.00 0.00 0.00 3.71
3329 9448 0.251341 ATGCACCAACCAGTTCTCCC 60.251 55.000 0.00 0.00 0.00 4.30
3330 9449 1.150536 GCACCAACCAGTTCTCCCA 59.849 57.895 0.00 0.00 0.00 4.37
3331 9450 0.467290 GCACCAACCAGTTCTCCCAA 60.467 55.000 0.00 0.00 0.00 4.12
3332 9451 2.026905 GCACCAACCAGTTCTCCCAAA 61.027 52.381 0.00 0.00 0.00 3.28
3333 9452 2.383855 CACCAACCAGTTCTCCCAAAA 58.616 47.619 0.00 0.00 0.00 2.44
3334 9453 2.362077 CACCAACCAGTTCTCCCAAAAG 59.638 50.000 0.00 0.00 0.00 2.27
3335 9454 1.341209 CCAACCAGTTCTCCCAAAAGC 59.659 52.381 0.00 0.00 0.00 3.51
3336 9455 2.310538 CAACCAGTTCTCCCAAAAGCT 58.689 47.619 0.00 0.00 0.00 3.74
3337 9456 2.278332 ACCAGTTCTCCCAAAAGCTC 57.722 50.000 0.00 0.00 0.00 4.09
3338 9457 1.494721 ACCAGTTCTCCCAAAAGCTCA 59.505 47.619 0.00 0.00 0.00 4.26
3339 9458 2.091885 ACCAGTTCTCCCAAAAGCTCAA 60.092 45.455 0.00 0.00 0.00 3.02
3340 9459 2.555757 CCAGTTCTCCCAAAAGCTCAAG 59.444 50.000 0.00 0.00 0.00 3.02
3341 9460 2.030451 CAGTTCTCCCAAAAGCTCAAGC 60.030 50.000 0.00 0.00 42.49 4.01
3353 9472 2.935481 GCTCAAGCTGATGGGAAAAG 57.065 50.000 0.00 0.00 38.21 2.27
3354 9473 1.475682 GCTCAAGCTGATGGGAAAAGG 59.524 52.381 0.00 0.00 38.21 3.11
3355 9474 2.800250 CTCAAGCTGATGGGAAAAGGT 58.200 47.619 0.00 0.00 0.00 3.50
3356 9475 2.490903 CTCAAGCTGATGGGAAAAGGTG 59.509 50.000 0.00 0.00 0.00 4.00
3357 9476 1.547372 CAAGCTGATGGGAAAAGGTGG 59.453 52.381 0.00 0.00 0.00 4.61
3358 9477 0.040204 AGCTGATGGGAAAAGGTGGG 59.960 55.000 0.00 0.00 0.00 4.61
3359 9478 1.607801 GCTGATGGGAAAAGGTGGGC 61.608 60.000 0.00 0.00 0.00 5.36
3360 9479 0.040204 CTGATGGGAAAAGGTGGGCT 59.960 55.000 0.00 0.00 0.00 5.19
3361 9480 1.284785 CTGATGGGAAAAGGTGGGCTA 59.715 52.381 0.00 0.00 0.00 3.93
3362 9481 1.929494 TGATGGGAAAAGGTGGGCTAT 59.071 47.619 0.00 0.00 0.00 2.97
3363 9482 2.310538 GATGGGAAAAGGTGGGCTATG 58.689 52.381 0.00 0.00 0.00 2.23
3364 9483 0.324275 TGGGAAAAGGTGGGCTATGC 60.324 55.000 0.00 0.00 0.00 3.14
3365 9484 0.324275 GGGAAAAGGTGGGCTATGCA 60.324 55.000 0.00 0.00 0.00 3.96
3366 9485 1.689258 GGGAAAAGGTGGGCTATGCAT 60.689 52.381 3.79 3.79 0.00 3.96
3367 9486 2.110578 GGAAAAGGTGGGCTATGCATT 58.889 47.619 3.54 0.00 0.00 3.56
3368 9487 2.501316 GGAAAAGGTGGGCTATGCATTT 59.499 45.455 3.54 0.00 0.00 2.32
3369 9488 3.704061 GGAAAAGGTGGGCTATGCATTTA 59.296 43.478 3.54 0.00 0.00 1.40
3370 9489 4.344968 GGAAAAGGTGGGCTATGCATTTAT 59.655 41.667 3.54 0.00 0.00 1.40
3371 9490 5.538433 GGAAAAGGTGGGCTATGCATTTATA 59.462 40.000 3.54 0.00 0.00 0.98
3372 9491 6.405278 AAAAGGTGGGCTATGCATTTATAC 57.595 37.500 3.54 0.00 0.00 1.47
3373 9492 5.324832 AAGGTGGGCTATGCATTTATACT 57.675 39.130 3.54 0.00 0.00 2.12
3374 9493 5.324832 AGGTGGGCTATGCATTTATACTT 57.675 39.130 3.54 0.00 0.00 2.24
3375 9494 5.316987 AGGTGGGCTATGCATTTATACTTC 58.683 41.667 3.54 0.00 0.00 3.01
3376 9495 5.070001 GGTGGGCTATGCATTTATACTTCA 58.930 41.667 3.54 0.00 0.00 3.02
3377 9496 5.534654 GGTGGGCTATGCATTTATACTTCAA 59.465 40.000 3.54 0.00 0.00 2.69
3378 9497 6.294176 GGTGGGCTATGCATTTATACTTCAAG 60.294 42.308 3.54 0.00 0.00 3.02
3379 9498 5.241506 TGGGCTATGCATTTATACTTCAAGC 59.758 40.000 3.54 3.08 0.00 4.01
3380 9499 5.335976 GGGCTATGCATTTATACTTCAAGCC 60.336 44.000 17.63 17.63 43.96 4.35
3381 9500 5.474876 GGCTATGCATTTATACTTCAAGCCT 59.525 40.000 18.30 0.00 41.96 4.58
3382 9501 6.655003 GGCTATGCATTTATACTTCAAGCCTA 59.345 38.462 18.30 0.00 41.96 3.93
3383 9502 7.174946 GGCTATGCATTTATACTTCAAGCCTAA 59.825 37.037 18.30 0.00 41.96 2.69
3384 9503 8.567948 GCTATGCATTTATACTTCAAGCCTAAA 58.432 33.333 3.54 0.00 0.00 1.85
3387 9506 8.292444 TGCATTTATACTTCAAGCCTAAATGT 57.708 30.769 21.78 0.00 39.90 2.71
3388 9507 8.190122 TGCATTTATACTTCAAGCCTAAATGTG 58.810 33.333 21.78 9.47 39.90 3.21
3389 9508 7.649306 GCATTTATACTTCAAGCCTAAATGTGG 59.351 37.037 21.78 8.00 39.90 4.17
3390 9509 8.902806 CATTTATACTTCAAGCCTAAATGTGGA 58.097 33.333 16.93 0.00 36.08 4.02
3391 9510 7.859325 TTATACTTCAAGCCTAAATGTGGAC 57.141 36.000 0.00 0.00 0.00 4.02
3392 9511 4.373156 ACTTCAAGCCTAAATGTGGACT 57.627 40.909 0.00 0.00 0.00 3.85
3393 9512 4.074970 ACTTCAAGCCTAAATGTGGACTG 58.925 43.478 0.00 0.00 0.00 3.51
3394 9513 4.202461 ACTTCAAGCCTAAATGTGGACTGA 60.202 41.667 0.00 0.00 0.00 3.41
3395 9514 4.365514 TCAAGCCTAAATGTGGACTGAA 57.634 40.909 0.00 0.00 0.00 3.02
3396 9515 4.724399 TCAAGCCTAAATGTGGACTGAAA 58.276 39.130 0.00 0.00 0.00 2.69
3397 9516 4.761739 TCAAGCCTAAATGTGGACTGAAAG 59.238 41.667 0.00 0.00 42.29 2.62
3436 9555 4.314740 TTTTTAAATTGCGCCAGACAGT 57.685 36.364 4.18 0.00 0.00 3.55
3443 9562 0.601046 TGCGCCAGACAGTTCTTGAG 60.601 55.000 4.18 0.00 0.00 3.02
3507 9626 5.368989 CACTAACCAGTTCTCCCAATATCC 58.631 45.833 0.00 0.00 30.46 2.59
3530 9649 2.087248 CTGATGGGGAAAGGTGGGT 58.913 57.895 0.00 0.00 0.00 4.51
3718 9839 7.415653 GCAGAACCTTTGTATATTCTTTCCCAG 60.416 40.741 0.00 0.00 28.85 4.45
3888 10010 1.327460 CATACGCCCACAATGTTCTCG 59.673 52.381 0.00 0.00 0.00 4.04
3901 10023 5.440685 CAATGTTCTCGTTGTTTACACCTC 58.559 41.667 0.00 0.00 36.25 3.85
4324 10460 4.184629 GTCCTGTGTTGTACTCATCCATC 58.815 47.826 0.00 0.00 0.00 3.51
4364 10502 6.874288 AAATGATAGAGCTTTGCAGGATAC 57.126 37.500 0.00 0.00 0.00 2.24
4415 10568 8.804912 ATCCAATTGATAATATTCTCTGCTCC 57.195 34.615 7.12 0.00 0.00 4.70
4416 10569 7.748677 TCCAATTGATAATATTCTCTGCTCCA 58.251 34.615 7.12 0.00 0.00 3.86
4417 10570 7.663081 TCCAATTGATAATATTCTCTGCTCCAC 59.337 37.037 7.12 0.00 0.00 4.02
4418 10571 7.664731 CCAATTGATAATATTCTCTGCTCCACT 59.335 37.037 7.12 0.00 0.00 4.00
4419 10572 9.064706 CAATTGATAATATTCTCTGCTCCACTT 57.935 33.333 0.00 0.00 0.00 3.16
4420 10573 8.845413 ATTGATAATATTCTCTGCTCCACTTC 57.155 34.615 0.00 0.00 0.00 3.01
4421 10574 7.609097 TGATAATATTCTCTGCTCCACTTCT 57.391 36.000 0.00 0.00 0.00 2.85
4428 12286 1.143305 CTGCTCCACTTCTGTTCACG 58.857 55.000 0.00 0.00 0.00 4.35
4720 12625 2.762887 TCCTTGTTGATGCCAAAACACA 59.237 40.909 0.00 0.00 36.08 3.72
4721 12626 2.865551 CCTTGTTGATGCCAAAACACAC 59.134 45.455 0.00 0.00 36.08 3.82
4722 12627 3.519579 CTTGTTGATGCCAAAACACACA 58.480 40.909 0.00 0.00 36.08 3.72
4878 12783 3.287222 TCCATTTAACCAGGCTGCATAC 58.713 45.455 9.56 0.00 0.00 2.39
4990 13060 0.394899 CAATGCCTCCCACCTCCTTC 60.395 60.000 0.00 0.00 0.00 3.46
5073 13143 6.534634 ACAAAGCTATCCAAACTACTGACTT 58.465 36.000 0.00 0.00 0.00 3.01
5410 13480 4.588899 TGTGCTGGTATCTGCTAAACAAT 58.411 39.130 6.41 0.00 38.45 2.71
5414 13484 7.134815 GTGCTGGTATCTGCTAAACAATAATG 58.865 38.462 6.41 0.00 38.45 1.90
5508 13578 4.323417 CTTTGTGTATTGGCTACTGGTCA 58.677 43.478 0.00 0.00 0.00 4.02
5541 13612 1.069049 GCCCACTTTCTGCATGTTTGT 59.931 47.619 0.00 0.00 0.00 2.83
5609 13680 8.524487 CACAGGAAGTAAGACTCTTACAAGTAT 58.476 37.037 24.62 9.94 0.00 2.12
5675 13753 5.556194 GCACAAAACAAGATTACCTTTTGCG 60.556 40.000 0.00 0.00 37.18 4.85
5804 13882 9.413734 AGCTATCTGAAATTATTAGTTTTGGCT 57.586 29.630 0.00 0.00 0.00 4.75
5863 13947 6.940298 GTCCTTACAATTATAGCTGGCCATTA 59.060 38.462 5.51 2.12 0.00 1.90
6054 14138 3.011818 TGCTGTCCAATACTGAATGCTG 58.988 45.455 0.00 0.00 0.00 4.41
6122 14212 7.147620 TGTCAACTTCAACCTCCTAGTTTTCTA 60.148 37.037 0.00 0.00 0.00 2.10
6295 14385 7.546667 GTCCTCCGTTTCTATTGTGTTTACATA 59.453 37.037 0.00 0.00 36.53 2.29
6486 14578 8.751302 ATATTAAACTAGTTTTTGCAAACCCG 57.249 30.769 25.07 1.72 43.08 5.28
6628 14752 5.675444 GCCATTTAATTAGCAGTTACGTTCG 59.325 40.000 0.00 0.00 0.00 3.95
6815 14941 6.435428 GGAAAAGCTAAAAATCTGACGTCAA 58.565 36.000 20.49 11.00 0.00 3.18
6840 14966 1.667236 TAGGCATGGCAAATCTGACG 58.333 50.000 22.64 0.00 30.46 4.35
6864 14990 8.868916 ACGTTTTTCATGGCAATTTATATTGTC 58.131 29.630 3.80 3.80 44.75 3.18
6898 15024 0.317436 TTTAGTTTGCAAGCACGGCG 60.317 50.000 16.04 4.80 0.00 6.46
6906 15032 2.436646 AAGCACGGCGATTCCTGG 60.437 61.111 16.62 0.00 0.00 4.45
6940 15066 3.126831 CTGAGACGGATTTACCATGCTC 58.873 50.000 0.00 0.00 38.90 4.26
6973 15099 3.342377 TGCCATCCTTGACGAACATAA 57.658 42.857 0.00 0.00 0.00 1.90
6974 15100 3.884895 TGCCATCCTTGACGAACATAAT 58.115 40.909 0.00 0.00 0.00 1.28
6975 15101 4.269183 TGCCATCCTTGACGAACATAATT 58.731 39.130 0.00 0.00 0.00 1.40
6976 15102 4.704540 TGCCATCCTTGACGAACATAATTT 59.295 37.500 0.00 0.00 0.00 1.82
6977 15103 5.036737 GCCATCCTTGACGAACATAATTTG 58.963 41.667 0.00 0.00 0.00 2.32
6978 15104 5.036737 CCATCCTTGACGAACATAATTTGC 58.963 41.667 0.00 0.00 0.00 3.68
6979 15105 4.695217 TCCTTGACGAACATAATTTGCC 57.305 40.909 0.00 0.00 0.00 4.52
6980 15106 4.075682 TCCTTGACGAACATAATTTGCCA 58.924 39.130 0.00 0.00 0.00 4.92
6981 15107 4.704540 TCCTTGACGAACATAATTTGCCAT 59.295 37.500 0.00 0.00 0.00 4.40
6982 15108 4.799949 CCTTGACGAACATAATTTGCCATG 59.200 41.667 0.00 0.00 0.00 3.66
7016 15142 7.304919 CTGACGTCAGATTTGTAGTAGAGTA 57.695 40.000 36.73 0.00 46.59 2.59
7070 15198 6.992715 GTGGTGCTGATTGTTAGATATACCTT 59.007 38.462 0.00 0.00 0.00 3.50
7316 15446 5.448360 GCTGCAAATTCTGTCAGTATCCTTC 60.448 44.000 0.00 0.00 33.94 3.46
7788 15930 3.704566 TCGCTCCATACTGTTAGTGGATT 59.295 43.478 8.92 0.00 40.96 3.01
7834 15983 7.283625 TGTAAGCTTTGACCAAATTACATGT 57.716 32.000 3.20 2.69 33.96 3.21
8020 16198 9.343994 AGGGAGTATTATTAATCATCCTGACAT 57.656 33.333 14.71 1.45 0.00 3.06
8150 16329 8.947115 GCAAGTGAATTTACCCCAGATATATAC 58.053 37.037 0.00 0.00 0.00 1.47
8153 16332 9.047947 AGTGAATTTACCCCAGATATATACTCC 57.952 37.037 0.00 0.00 0.00 3.85
8154 16333 8.265764 GTGAATTTACCCCAGATATATACTCCC 58.734 40.741 0.00 0.00 0.00 4.30
8155 16334 8.191110 TGAATTTACCCCAGATATATACTCCCT 58.809 37.037 0.00 0.00 0.00 4.20
8156 16335 8.625467 AATTTACCCCAGATATATACTCCCTC 57.375 38.462 0.00 0.00 0.00 4.30
8157 16336 4.628661 ACCCCAGATATATACTCCCTCC 57.371 50.000 0.00 0.00 0.00 4.30
8158 16337 3.052793 ACCCCAGATATATACTCCCTCCG 60.053 52.174 0.00 0.00 0.00 4.63
8159 16338 3.052793 CCCCAGATATATACTCCCTCCGT 60.053 52.174 0.00 0.00 0.00 4.69
8160 16339 4.572223 CCCCAGATATATACTCCCTCCGTT 60.572 50.000 0.00 0.00 0.00 4.44
8161 16340 4.645588 CCCAGATATATACTCCCTCCGTTC 59.354 50.000 0.00 0.00 0.00 3.95
8162 16341 4.645588 CCAGATATATACTCCCTCCGTTCC 59.354 50.000 0.00 0.00 0.00 3.62
8163 16342 5.262009 CAGATATATACTCCCTCCGTTCCA 58.738 45.833 0.00 0.00 0.00 3.53
8164 16343 5.715279 CAGATATATACTCCCTCCGTTCCAA 59.285 44.000 0.00 0.00 0.00 3.53
8165 16344 6.210784 CAGATATATACTCCCTCCGTTCCAAA 59.789 42.308 0.00 0.00 0.00 3.28
8166 16345 6.785963 AGATATATACTCCCTCCGTTCCAAAA 59.214 38.462 0.00 0.00 0.00 2.44
8167 16346 5.906772 ATATACTCCCTCCGTTCCAAAAT 57.093 39.130 0.00 0.00 0.00 1.82
8168 16347 8.674925 ATATATACTCCCTCCGTTCCAAAATA 57.325 34.615 0.00 0.00 0.00 1.40
8169 16348 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
8170 16349 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
8171 16350 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
8172 16351 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
8173 16352 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
8174 16353 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
8175 16354 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
8176 16355 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
8177 16356 4.430007 TCCGTTCCAAAATAGATGACTCG 58.570 43.478 0.00 0.00 0.00 4.18
8178 16357 4.158949 TCCGTTCCAAAATAGATGACTCGA 59.841 41.667 0.00 0.00 0.00 4.04
8179 16358 4.267928 CCGTTCCAAAATAGATGACTCGAC 59.732 45.833 0.00 0.00 0.00 4.20
8180 16359 5.103000 CGTTCCAAAATAGATGACTCGACT 58.897 41.667 0.00 0.00 0.00 4.18
8181 16360 5.577164 CGTTCCAAAATAGATGACTCGACTT 59.423 40.000 0.00 0.00 0.00 3.01
8182 16361 6.090898 CGTTCCAAAATAGATGACTCGACTTT 59.909 38.462 0.00 0.00 0.00 2.66
8183 16362 6.968131 TCCAAAATAGATGACTCGACTTTG 57.032 37.500 0.00 0.00 0.00 2.77
8184 16363 6.464222 TCCAAAATAGATGACTCGACTTTGT 58.536 36.000 0.00 0.00 0.00 2.83
8185 16364 7.608153 TCCAAAATAGATGACTCGACTTTGTA 58.392 34.615 0.00 0.00 0.00 2.41
8186 16365 7.544566 TCCAAAATAGATGACTCGACTTTGTAC 59.455 37.037 0.00 0.00 0.00 2.90
8187 16366 7.545965 CCAAAATAGATGACTCGACTTTGTACT 59.454 37.037 0.00 0.00 0.00 2.73
8188 16367 9.569167 CAAAATAGATGACTCGACTTTGTACTA 57.431 33.333 0.00 0.00 0.00 1.82
8190 16369 9.570488 AAATAGATGACTCGACTTTGTACTAAC 57.430 33.333 0.00 0.00 0.00 2.34
8191 16370 5.952033 AGATGACTCGACTTTGTACTAACC 58.048 41.667 0.00 0.00 0.00 2.85
8192 16371 5.475909 AGATGACTCGACTTTGTACTAACCA 59.524 40.000 0.00 0.00 0.00 3.67
8193 16372 5.518848 TGACTCGACTTTGTACTAACCAA 57.481 39.130 0.00 0.00 0.00 3.67
8194 16373 5.904941 TGACTCGACTTTGTACTAACCAAA 58.095 37.500 0.00 0.00 0.00 3.28
8203 16382 7.548196 CTTTGTACTAACCAAAGTTGAGTCA 57.452 36.000 5.04 0.00 42.34 3.41
8204 16383 8.154649 CTTTGTACTAACCAAAGTTGAGTCAT 57.845 34.615 0.00 0.00 42.34 3.06
8205 16384 7.724305 TTGTACTAACCAAAGTTGAGTCATC 57.276 36.000 0.00 0.00 36.68 2.92
8206 16385 7.062749 TGTACTAACCAAAGTTGAGTCATCT 57.937 36.000 0.00 0.00 36.68 2.90
8207 16386 8.185506 TGTACTAACCAAAGTTGAGTCATCTA 57.814 34.615 4.14 0.00 36.68 1.98
8208 16387 8.812972 TGTACTAACCAAAGTTGAGTCATCTAT 58.187 33.333 4.14 0.00 36.68 1.98
8209 16388 9.654663 GTACTAACCAAAGTTGAGTCATCTATT 57.345 33.333 4.14 0.00 36.68 1.73
8211 16390 9.574516 ACTAACCAAAGTTGAGTCATCTATTTT 57.425 29.630 4.14 0.00 36.68 1.82
8212 16391 9.831737 CTAACCAAAGTTGAGTCATCTATTTTG 57.168 33.333 4.14 5.83 37.51 2.44
8216 16395 8.733857 CAAAGTTGAGTCATCTATTTTGGAAC 57.266 34.615 4.14 0.00 35.65 3.62
8217 16396 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
8218 16397 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
8219 16398 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
8220 16399 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
8221 16400 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
8222 16401 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
8223 16402 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
8224 16403 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
8225 16404 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
8226 16405 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
8286 16465 7.067421 TCTTGTATACTGGCTAGAGTACCAAT 58.933 38.462 3.17 0.00 34.96 3.16
8290 16469 4.744795 ACTGGCTAGAGTACCAATGAAG 57.255 45.455 3.17 0.00 34.96 3.02
8322 16501 1.449956 GCAGCTGGAGAGGCTTCTG 60.450 63.158 17.12 0.00 38.03 3.02
8353 16532 8.279970 ACAGATCAAATTGACCGAAATCATAA 57.720 30.769 0.00 0.00 0.00 1.90
8525 16704 2.886862 TGTTGTGCCATTCAGGTTTG 57.113 45.000 0.00 0.00 40.61 2.93
8530 16709 2.890311 TGTGCCATTCAGGTTTGGTTAG 59.110 45.455 0.00 0.00 40.61 2.34
8646 16833 2.047830 CACCTACTCCCTATGGTTCCC 58.952 57.143 0.00 0.00 0.00 3.97
8684 16871 0.251297 CCCAACACCCATCTTGAGCA 60.251 55.000 0.00 0.00 0.00 4.26
8710 16897 2.115266 GTGTCCTGGGTTGTGGGG 59.885 66.667 0.00 0.00 0.00 4.96
8718 16905 0.325602 TGGGTTGTGGGGAACGTATC 59.674 55.000 0.00 0.00 0.00 2.24
8719 16906 0.741927 GGGTTGTGGGGAACGTATCG 60.742 60.000 0.00 0.00 0.00 2.92
8720 16907 0.247185 GGTTGTGGGGAACGTATCGA 59.753 55.000 0.00 0.00 0.00 3.59
8721 16908 1.636988 GTTGTGGGGAACGTATCGAG 58.363 55.000 0.00 0.00 0.00 4.04
8722 16909 0.108520 TTGTGGGGAACGTATCGAGC 60.109 55.000 0.00 0.00 0.00 5.03
8723 16910 1.227176 GTGGGGAACGTATCGAGCC 60.227 63.158 0.00 0.00 0.00 4.70
8724 16911 2.420466 GGGGAACGTATCGAGCCC 59.580 66.667 12.62 12.62 40.69 5.19
8725 16912 2.132352 GGGGAACGTATCGAGCCCT 61.132 63.158 17.42 0.00 40.98 5.19
8726 16913 0.825010 GGGGAACGTATCGAGCCCTA 60.825 60.000 17.42 0.00 40.98 3.53
8727 16914 1.035139 GGGAACGTATCGAGCCCTAA 58.965 55.000 13.33 0.00 39.30 2.69
8728 16915 1.269465 GGGAACGTATCGAGCCCTAAC 60.269 57.143 13.33 0.00 39.30 2.34
8729 16916 1.406539 GGAACGTATCGAGCCCTAACA 59.593 52.381 0.00 0.00 0.00 2.41
8730 16917 2.159198 GGAACGTATCGAGCCCTAACAA 60.159 50.000 0.00 0.00 0.00 2.83
8731 16918 3.492137 GGAACGTATCGAGCCCTAACAAT 60.492 47.826 0.00 0.00 0.00 2.71
8732 16919 3.814005 ACGTATCGAGCCCTAACAATT 57.186 42.857 0.00 0.00 0.00 2.32
8733 16920 4.133013 ACGTATCGAGCCCTAACAATTT 57.867 40.909 0.00 0.00 0.00 1.82
8734 16921 4.510571 ACGTATCGAGCCCTAACAATTTT 58.489 39.130 0.00 0.00 0.00 1.82
8735 16922 4.331717 ACGTATCGAGCCCTAACAATTTTG 59.668 41.667 0.00 0.00 0.00 2.44
8736 16923 4.331717 CGTATCGAGCCCTAACAATTTTGT 59.668 41.667 0.00 0.00 44.72 2.83
8737 16924 4.965119 ATCGAGCCCTAACAATTTTGTC 57.035 40.909 0.00 0.00 41.31 3.18
8738 16925 4.015872 TCGAGCCCTAACAATTTTGTCT 57.984 40.909 0.00 0.00 41.31 3.41
8739 16926 4.394729 TCGAGCCCTAACAATTTTGTCTT 58.605 39.130 0.00 0.00 41.31 3.01
8740 16927 4.825085 TCGAGCCCTAACAATTTTGTCTTT 59.175 37.500 0.00 0.00 41.31 2.52
8741 16928 4.917415 CGAGCCCTAACAATTTTGTCTTTG 59.083 41.667 0.00 0.00 41.31 2.77
8742 16929 4.631131 AGCCCTAACAATTTTGTCTTTGC 58.369 39.130 0.00 0.00 41.31 3.68
8743 16930 3.745975 GCCCTAACAATTTTGTCTTTGCC 59.254 43.478 0.00 0.00 41.31 4.52
8744 16931 3.987220 CCCTAACAATTTTGTCTTTGCCG 59.013 43.478 0.00 0.00 41.31 5.69
8745 16932 4.261825 CCCTAACAATTTTGTCTTTGCCGA 60.262 41.667 0.00 0.00 41.31 5.54
8746 16933 5.469479 CCTAACAATTTTGTCTTTGCCGAT 58.531 37.500 0.00 0.00 41.31 4.18
8747 16934 5.345741 CCTAACAATTTTGTCTTTGCCGATG 59.654 40.000 0.00 0.00 41.31 3.84
8748 16935 4.320608 ACAATTTTGTCTTTGCCGATGT 57.679 36.364 0.00 0.00 36.50 3.06
8749 16936 4.298332 ACAATTTTGTCTTTGCCGATGTC 58.702 39.130 0.00 0.00 36.50 3.06
8750 16937 2.679355 TTTTGTCTTTGCCGATGTCG 57.321 45.000 0.00 0.00 39.44 4.35
8751 16938 1.872388 TTTGTCTTTGCCGATGTCGA 58.128 45.000 3.62 0.00 43.02 4.20
8752 16939 1.428448 TTGTCTTTGCCGATGTCGAG 58.572 50.000 3.62 0.00 43.02 4.04
8753 16940 0.389817 TGTCTTTGCCGATGTCGAGG 60.390 55.000 3.62 0.00 43.02 4.63
8754 16941 0.389948 GTCTTTGCCGATGTCGAGGT 60.390 55.000 3.62 0.00 43.02 3.85
8755 16942 0.320374 TCTTTGCCGATGTCGAGGTT 59.680 50.000 3.62 0.00 43.02 3.50
8756 16943 0.721718 CTTTGCCGATGTCGAGGTTC 59.278 55.000 3.62 0.00 43.02 3.62
8757 16944 0.320374 TTTGCCGATGTCGAGGTTCT 59.680 50.000 3.62 0.00 43.02 3.01
8758 16945 1.179152 TTGCCGATGTCGAGGTTCTA 58.821 50.000 3.62 0.00 43.02 2.10
8759 16946 1.399714 TGCCGATGTCGAGGTTCTAT 58.600 50.000 3.62 0.00 43.02 1.98
8760 16947 1.754803 TGCCGATGTCGAGGTTCTATT 59.245 47.619 3.62 0.00 43.02 1.73
8761 16948 2.167693 TGCCGATGTCGAGGTTCTATTT 59.832 45.455 3.62 0.00 43.02 1.40
8762 16949 2.540101 GCCGATGTCGAGGTTCTATTTG 59.460 50.000 3.62 0.00 43.02 2.32
8763 16950 3.782046 CCGATGTCGAGGTTCTATTTGT 58.218 45.455 3.62 0.00 43.02 2.83
8764 16951 4.181578 CCGATGTCGAGGTTCTATTTGTT 58.818 43.478 3.62 0.00 43.02 2.83
8765 16952 5.345702 CCGATGTCGAGGTTCTATTTGTTA 58.654 41.667 3.62 0.00 43.02 2.41
8766 16953 5.231568 CCGATGTCGAGGTTCTATTTGTTAC 59.768 44.000 3.62 0.00 43.02 2.50
8767 16954 5.803461 CGATGTCGAGGTTCTATTTGTTACA 59.197 40.000 0.00 0.00 43.02 2.41
8768 16955 6.237490 CGATGTCGAGGTTCTATTTGTTACAC 60.237 42.308 0.00 0.00 43.02 2.90
8769 16956 5.845103 TGTCGAGGTTCTATTTGTTACACA 58.155 37.500 0.00 0.00 0.00 3.72
8770 16957 5.924254 TGTCGAGGTTCTATTTGTTACACAG 59.076 40.000 0.00 0.00 0.00 3.66
8771 16958 5.347907 GTCGAGGTTCTATTTGTTACACAGG 59.652 44.000 0.00 0.00 0.00 4.00
8772 16959 5.244402 TCGAGGTTCTATTTGTTACACAGGA 59.756 40.000 0.00 0.00 0.00 3.86
8773 16960 5.577164 CGAGGTTCTATTTGTTACACAGGAG 59.423 44.000 0.00 0.00 0.00 3.69
8774 16961 6.571731 CGAGGTTCTATTTGTTACACAGGAGA 60.572 42.308 0.00 0.00 0.00 3.71
8775 16962 6.702329 AGGTTCTATTTGTTACACAGGAGAG 58.298 40.000 0.00 0.00 0.00 3.20
8776 16963 5.875359 GGTTCTATTTGTTACACAGGAGAGG 59.125 44.000 0.00 0.00 0.00 3.69
8777 16964 5.086104 TCTATTTGTTACACAGGAGAGGC 57.914 43.478 0.00 0.00 0.00 4.70
8794 16981 2.953821 CGGTTTTGCGCTCCATGT 59.046 55.556 9.73 0.00 0.00 3.21
8835 17022 2.290641 TGAACCGGCACCTTGATATGTT 60.291 45.455 0.00 0.00 0.00 2.71
8848 17035 8.892723 CACCTTGATATGTTAAACAAGCATCTA 58.107 33.333 0.00 0.00 38.52 1.98
8909 17096 4.811555 TGACATTATCGTTGCTAATGCC 57.188 40.909 3.30 0.00 39.24 4.40
8910 17097 4.195416 TGACATTATCGTTGCTAATGCCA 58.805 39.130 3.30 0.00 39.24 4.92
8911 17098 4.821260 TGACATTATCGTTGCTAATGCCAT 59.179 37.500 3.30 0.00 39.24 4.40
8912 17099 5.299028 TGACATTATCGTTGCTAATGCCATT 59.701 36.000 0.00 0.00 39.24 3.16
8913 17100 6.147864 ACATTATCGTTGCTAATGCCATTT 57.852 33.333 0.00 0.00 39.24 2.32
8914 17101 6.572519 ACATTATCGTTGCTAATGCCATTTT 58.427 32.000 0.00 0.00 39.24 1.82
8915 17102 7.041107 ACATTATCGTTGCTAATGCCATTTTT 58.959 30.769 0.00 0.00 39.24 1.94
8916 17103 6.884096 TTATCGTTGCTAATGCCATTTTTG 57.116 33.333 0.00 0.00 38.71 2.44
8930 17117 5.591877 TGCCATTTTTGCAACCAAAATTACT 59.408 32.000 0.00 0.00 46.84 2.24
9000 17187 8.280497 CCAACACTTGTCTACACTTAATAACAC 58.720 37.037 0.00 0.00 0.00 3.32
9001 17188 7.633361 ACACTTGTCTACACTTAATAACACG 57.367 36.000 0.00 0.00 0.00 4.49
9002 17189 6.145048 ACACTTGTCTACACTTAATAACACGC 59.855 38.462 0.00 0.00 0.00 5.34
9003 17190 5.636543 ACTTGTCTACACTTAATAACACGCC 59.363 40.000 0.00 0.00 0.00 5.68
9004 17191 5.395682 TGTCTACACTTAATAACACGCCT 57.604 39.130 0.00 0.00 0.00 5.52
9005 17192 5.404946 TGTCTACACTTAATAACACGCCTC 58.595 41.667 0.00 0.00 0.00 4.70
9006 17193 5.047872 TGTCTACACTTAATAACACGCCTCA 60.048 40.000 0.00 0.00 0.00 3.86
9007 17194 5.865552 GTCTACACTTAATAACACGCCTCAA 59.134 40.000 0.00 0.00 0.00 3.02
9008 17195 6.534079 GTCTACACTTAATAACACGCCTCAAT 59.466 38.462 0.00 0.00 0.00 2.57
9009 17196 5.796350 ACACTTAATAACACGCCTCAATC 57.204 39.130 0.00 0.00 0.00 2.67
9010 17197 5.242434 ACACTTAATAACACGCCTCAATCA 58.758 37.500 0.00 0.00 0.00 2.57
9011 17198 5.880332 ACACTTAATAACACGCCTCAATCAT 59.120 36.000 0.00 0.00 0.00 2.45
9012 17199 6.183360 ACACTTAATAACACGCCTCAATCATG 60.183 38.462 0.00 0.00 0.00 3.07
9013 17200 5.880332 ACTTAATAACACGCCTCAATCATGT 59.120 36.000 0.00 0.00 0.00 3.21
9014 17201 7.011016 CACTTAATAACACGCCTCAATCATGTA 59.989 37.037 0.00 0.00 0.00 2.29
9015 17202 5.734855 AATAACACGCCTCAATCATGTAC 57.265 39.130 0.00 0.00 0.00 2.90
9016 17203 1.640428 ACACGCCTCAATCATGTACG 58.360 50.000 0.00 0.00 0.00 3.67
9017 17204 1.067142 ACACGCCTCAATCATGTACGT 60.067 47.619 0.00 0.00 33.23 3.57
9018 17205 1.999735 CACGCCTCAATCATGTACGTT 59.000 47.619 0.00 0.00 31.61 3.99
9019 17206 2.415168 CACGCCTCAATCATGTACGTTT 59.585 45.455 0.00 0.00 31.61 3.60
9020 17207 3.615056 CACGCCTCAATCATGTACGTTTA 59.385 43.478 0.00 0.00 31.61 2.01
9021 17208 4.092237 CACGCCTCAATCATGTACGTTTAA 59.908 41.667 0.00 0.00 31.61 1.52
9022 17209 4.873827 ACGCCTCAATCATGTACGTTTAAT 59.126 37.500 0.00 0.00 30.47 1.40
9023 17210 5.197549 CGCCTCAATCATGTACGTTTAATG 58.802 41.667 0.00 0.00 0.00 1.90
9024 17211 5.006261 CGCCTCAATCATGTACGTTTAATGA 59.994 40.000 0.00 1.20 34.96 2.57
9025 17212 6.292865 CGCCTCAATCATGTACGTTTAATGAT 60.293 38.462 12.12 12.12 41.64 2.45
9026 17213 7.072030 GCCTCAATCATGTACGTTTAATGATC 58.928 38.462 16.12 0.00 39.53 2.92
9027 17214 7.254761 GCCTCAATCATGTACGTTTAATGATCA 60.255 37.037 16.12 0.00 39.53 2.92
9028 17215 8.611757 CCTCAATCATGTACGTTTAATGATCAA 58.388 33.333 16.12 9.51 39.53 2.57
9029 17216 9.986833 CTCAATCATGTACGTTTAATGATCAAA 57.013 29.630 16.12 0.00 39.53 2.69
9030 17217 9.767684 TCAATCATGTACGTTTAATGATCAAAC 57.232 29.630 16.12 0.00 39.53 2.93
9031 17218 9.009327 CAATCATGTACGTTTAATGATCAAACC 57.991 33.333 16.12 0.00 39.53 3.27
9032 17219 7.079182 TCATGTACGTTTAATGATCAAACCC 57.921 36.000 0.00 0.00 33.27 4.11
9033 17220 6.882140 TCATGTACGTTTAATGATCAAACCCT 59.118 34.615 0.00 0.00 33.27 4.34
9034 17221 8.041919 TCATGTACGTTTAATGATCAAACCCTA 58.958 33.333 0.00 0.00 33.27 3.53
9035 17222 7.599630 TGTACGTTTAATGATCAAACCCTAC 57.400 36.000 0.00 2.59 33.27 3.18
9036 17223 6.594937 TGTACGTTTAATGATCAAACCCTACC 59.405 38.462 0.00 0.00 33.27 3.18
9037 17224 5.812286 ACGTTTAATGATCAAACCCTACCT 58.188 37.500 0.00 0.00 33.27 3.08
9038 17225 5.646360 ACGTTTAATGATCAAACCCTACCTG 59.354 40.000 0.00 0.00 33.27 4.00
9039 17226 5.065988 CGTTTAATGATCAAACCCTACCTGG 59.934 44.000 0.00 0.00 33.27 4.45
9052 17239 4.513406 CCTACCTGGGGCACTAAATTAA 57.487 45.455 0.00 0.00 0.00 1.40
9053 17240 5.061721 CCTACCTGGGGCACTAAATTAAT 57.938 43.478 0.00 0.00 0.00 1.40
9054 17241 4.827284 CCTACCTGGGGCACTAAATTAATG 59.173 45.833 0.00 0.00 0.00 1.90
9055 17242 4.331159 ACCTGGGGCACTAAATTAATGT 57.669 40.909 0.00 0.00 0.00 2.71
9056 17243 4.023291 ACCTGGGGCACTAAATTAATGTG 58.977 43.478 0.00 0.00 35.08 3.21
9072 17259 9.661563 AAATTAATGTGCTTTCAATGATCATGT 57.338 25.926 9.46 0.00 0.00 3.21
9075 17262 9.738832 TTAATGTGCTTTCAATGATCATGTATG 57.261 29.630 9.46 4.16 0.00 2.39
9076 17263 7.576861 ATGTGCTTTCAATGATCATGTATGA 57.423 32.000 9.46 6.72 41.70 2.15
9091 17278 6.537355 TCATGTATGATCCTCATCTTTTCCC 58.463 40.000 0.00 0.00 38.26 3.97
9092 17279 5.974156 TGTATGATCCTCATCTTTTCCCA 57.026 39.130 0.00 0.00 38.26 4.37
9093 17280 6.325993 TGTATGATCCTCATCTTTTCCCAA 57.674 37.500 0.00 0.00 38.26 4.12
9094 17281 6.122277 TGTATGATCCTCATCTTTTCCCAAC 58.878 40.000 0.00 0.00 38.26 3.77
9095 17282 4.934797 TGATCCTCATCTTTTCCCAACT 57.065 40.909 0.00 0.00 0.00 3.16
9096 17283 4.592942 TGATCCTCATCTTTTCCCAACTG 58.407 43.478 0.00 0.00 0.00 3.16
9097 17284 3.439857 TCCTCATCTTTTCCCAACTGG 57.560 47.619 0.00 0.00 0.00 4.00
9098 17285 2.716424 TCCTCATCTTTTCCCAACTGGT 59.284 45.455 0.00 0.00 34.77 4.00
9099 17286 2.821969 CCTCATCTTTTCCCAACTGGTG 59.178 50.000 0.00 0.00 34.77 4.17
9100 17287 3.498481 CCTCATCTTTTCCCAACTGGTGA 60.498 47.826 0.00 0.00 34.77 4.02
9101 17288 4.144297 CTCATCTTTTCCCAACTGGTGAA 58.856 43.478 0.00 0.00 34.77 3.18
9102 17289 4.541705 TCATCTTTTCCCAACTGGTGAAA 58.458 39.130 0.00 7.78 34.69 2.69
9103 17290 5.147032 TCATCTTTTCCCAACTGGTGAAAT 58.853 37.500 11.03 0.00 35.68 2.17
9104 17291 6.310941 TCATCTTTTCCCAACTGGTGAAATA 58.689 36.000 11.03 5.90 35.68 1.40
9105 17292 6.953520 TCATCTTTTCCCAACTGGTGAAATAT 59.046 34.615 11.03 7.29 35.68 1.28
9106 17293 6.588719 TCTTTTCCCAACTGGTGAAATATG 57.411 37.500 11.03 7.06 35.68 1.78
9107 17294 4.799564 TTTCCCAACTGGTGAAATATGC 57.200 40.909 0.00 0.00 32.93 3.14
9108 17295 3.448093 TCCCAACTGGTGAAATATGCA 57.552 42.857 0.00 0.00 34.77 3.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.055312 ACATCGGAGGAGAAAACCTAACC 60.055 47.826 0.00 0.00 40.73 2.85
91 94 1.378531 TCATTGAAAGAATCCGCCCG 58.621 50.000 0.00 0.00 0.00 6.13
94 97 6.501781 AGAAATCATCATTGAAAGAATCCGC 58.498 36.000 0.00 0.00 34.96 5.54
111 114 3.363970 GCTCGTCAAAAGCGAAGAAATCA 60.364 43.478 0.00 0.00 37.93 2.57
148 151 2.838736 TCCTCGCTGATATGGCTTTTC 58.161 47.619 0.00 0.00 0.00 2.29
152 155 0.034616 GCTTCCTCGCTGATATGGCT 59.965 55.000 0.00 0.00 0.00 4.75
177 182 1.546476 ACACCTCTTTACCTGAGCTCG 59.454 52.381 9.64 3.88 0.00 5.03
205 210 2.744202 CACATCAGTCGAAGAAAAGGGG 59.256 50.000 0.00 0.00 39.69 4.79
206 211 2.744202 CCACATCAGTCGAAGAAAAGGG 59.256 50.000 0.00 0.00 39.69 3.95
216 221 2.034879 GCCACCACCACATCAGTCG 61.035 63.158 0.00 0.00 0.00 4.18
249 254 3.879295 CCCATAAGCTCGATGTCAACATT 59.121 43.478 7.57 0.00 36.57 2.71
310 315 6.929606 AGACAACAGAACACTATCACCTAAAC 59.070 38.462 0.00 0.00 0.00 2.01
317 322 5.991606 CCAGAAAGACAACAGAACACTATCA 59.008 40.000 0.00 0.00 0.00 2.15
318 323 5.992217 ACCAGAAAGACAACAGAACACTATC 59.008 40.000 0.00 0.00 0.00 2.08
327 336 4.963276 TGACAAACCAGAAAGACAACAG 57.037 40.909 0.00 0.00 0.00 3.16
340 349 4.304110 TGTAGACATCGACTTGACAAACC 58.696 43.478 0.00 0.00 0.00 3.27
362 374 4.021368 ACCAGCGAGTAAAGTACAAGTCAT 60.021 41.667 0.00 0.00 0.00 3.06
364 376 3.910648 ACCAGCGAGTAAAGTACAAGTC 58.089 45.455 0.00 0.00 0.00 3.01
380 392 3.485877 GCGTGTCTCATTCATAAACCAGC 60.486 47.826 0.00 0.00 0.00 4.85
381 393 3.684305 TGCGTGTCTCATTCATAAACCAG 59.316 43.478 0.00 0.00 0.00 4.00
474 4481 1.978454 CTCATGCCCTTTGGATCTCC 58.022 55.000 0.00 0.00 0.00 3.71
616 4623 3.649277 CTGGAAGTGCCGGGTCTCG 62.649 68.421 2.18 0.00 39.56 4.04
624 4631 2.037847 AATGGCCCTGGAAGTGCC 59.962 61.111 0.00 4.90 45.56 5.01
664 4672 2.125912 GATGCTGCGTCGAGGTGT 60.126 61.111 6.05 0.00 0.00 4.16
665 4673 2.887568 GGATGCTGCGTCGAGGTG 60.888 66.667 15.13 1.77 0.00 4.00
666 4674 3.069980 GAGGATGCTGCGTCGAGGT 62.070 63.158 15.13 0.56 0.00 3.85
667 4675 2.279120 GAGGATGCTGCGTCGAGG 60.279 66.667 15.13 0.00 0.00 4.63
669 4677 2.181777 GTGAGGATGCTGCGTCGA 59.818 61.111 15.13 0.00 0.00 4.20
671 4679 1.812922 CTGGTGAGGATGCTGCGTC 60.813 63.158 13.40 13.40 0.00 5.19
672 4680 2.267006 CTGGTGAGGATGCTGCGT 59.733 61.111 0.00 0.00 0.00 5.24
673 4681 3.200593 GCTGGTGAGGATGCTGCG 61.201 66.667 0.00 0.00 0.00 5.18
674 4682 1.445716 GATGCTGGTGAGGATGCTGC 61.446 60.000 0.00 0.00 28.67 5.25
675 4683 0.818445 GGATGCTGGTGAGGATGCTG 60.818 60.000 0.00 0.00 35.75 4.41
676 4684 1.530771 GGATGCTGGTGAGGATGCT 59.469 57.895 0.00 0.00 35.75 3.79
677 4685 1.527844 GGGATGCTGGTGAGGATGC 60.528 63.158 0.00 0.00 37.61 3.91
678 4686 1.150081 GGGGATGCTGGTGAGGATG 59.850 63.158 0.00 0.00 28.67 3.51
679 4687 1.308128 TGGGGATGCTGGTGAGGAT 60.308 57.895 0.00 0.00 31.83 3.24
680 4688 2.124768 TGGGGATGCTGGTGAGGA 59.875 61.111 0.00 0.00 0.00 3.71
681 4689 2.273449 GTGGGGATGCTGGTGAGG 59.727 66.667 0.00 0.00 0.00 3.86
682 4690 2.273449 GGTGGGGATGCTGGTGAG 59.727 66.667 0.00 0.00 0.00 3.51
683 4691 3.338250 GGGTGGGGATGCTGGTGA 61.338 66.667 0.00 0.00 0.00 4.02
684 4692 4.447342 GGGGTGGGGATGCTGGTG 62.447 72.222 0.00 0.00 0.00 4.17
745 4869 2.066999 AGAGGTTGAGGCGGGATCC 61.067 63.158 1.92 1.92 0.00 3.36
746 4870 1.144936 CAGAGGTTGAGGCGGGATC 59.855 63.158 0.00 0.00 0.00 3.36
747 4871 1.306141 TCAGAGGTTGAGGCGGGAT 60.306 57.895 0.00 0.00 0.00 3.85
748 4872 2.119611 TCAGAGGTTGAGGCGGGA 59.880 61.111 0.00 0.00 0.00 5.14
755 4879 1.613630 GAGGGGGCTCAGAGGTTGA 60.614 63.158 0.00 0.00 0.00 3.18
756 4880 1.614824 AGAGGGGGCTCAGAGGTTG 60.615 63.158 0.00 0.00 0.00 3.77
757 4881 1.306568 GAGAGGGGGCTCAGAGGTT 60.307 63.158 0.00 0.00 35.01 3.50
758 4882 2.366570 GAGAGGGGGCTCAGAGGT 59.633 66.667 0.00 0.00 35.01 3.85
759 4883 2.445654 GGAGAGGGGGCTCAGAGG 60.446 72.222 0.00 0.00 36.62 3.69
760 4884 2.837291 CGGAGAGGGGGCTCAGAG 60.837 72.222 0.00 0.00 36.62 3.35
761 4885 3.347590 TCGGAGAGGGGGCTCAGA 61.348 66.667 0.00 0.00 36.89 3.27
783 4907 1.489230 CCAGTTCGGCCTAGGGTTTAT 59.511 52.381 11.72 0.00 0.00 1.40
950 5074 3.483869 GAGGGGTGCTGCCTAGGG 61.484 72.222 11.72 0.00 37.43 3.53
951 5075 3.854669 CGAGGGGTGCTGCCTAGG 61.855 72.222 3.67 3.67 37.43 3.02
952 5076 4.537433 GCGAGGGGTGCTGCCTAG 62.537 72.222 0.00 0.00 37.43 3.02
1080 5216 2.785540 TGAATACAGCCATCACAGCA 57.214 45.000 0.00 0.00 0.00 4.41
1205 5354 1.364721 GCTACACACACACACACACA 58.635 50.000 0.00 0.00 0.00 3.72
1308 5458 2.123077 AGGGAGCAGGGGAGATCG 60.123 66.667 0.00 0.00 0.00 3.69
1632 5804 2.069273 ACACACGCTGCAACTAGAATC 58.931 47.619 0.00 0.00 0.00 2.52
1689 6122 2.091885 AGCTCAAAGAACAAGGTTGGGA 60.092 45.455 0.00 0.00 0.00 4.37
1851 6293 6.729690 TGTTCACCAAAATGAAAAGATCCT 57.270 33.333 0.00 0.00 40.22 3.24
2135 8229 8.388656 ACCTCCCAGAATTAGTACAAAAGATA 57.611 34.615 0.00 0.00 0.00 1.98
2146 8240 6.773976 TTTTGCAATACCTCCCAGAATTAG 57.226 37.500 0.00 0.00 0.00 1.73
2188 8282 7.826690 ACAACAGAGTTTAACAAACACAGAAT 58.173 30.769 0.00 0.00 43.79 2.40
2235 8329 2.971660 TCACGTGGTTCAGAACTGAA 57.028 45.000 17.00 12.40 46.27 3.02
2291 8386 2.185004 ATACTCCAACGCAGCAAGTT 57.815 45.000 0.00 0.00 0.00 2.66
2659 8768 8.243961 AGATATAATATCGCAGTGCCTCTAAT 57.756 34.615 10.11 0.00 0.00 1.73
2698 8807 5.106317 GCAATAAATCAGGGTCGAAAAGTGA 60.106 40.000 0.00 0.00 0.00 3.41
2707 8816 5.447818 CGAACTTCTGCAATAAATCAGGGTC 60.448 44.000 0.00 0.00 0.00 4.46
2762 8872 5.070685 AGTTGAGACACTTATTTTGGGACC 58.929 41.667 0.00 0.00 0.00 4.46
3027 9139 5.066764 TGACATTTATGATGCATGTGTCCAG 59.933 40.000 2.46 0.00 34.43 3.86
3045 9162 5.132502 TCACAAGTGATTTGGAGTGACATT 58.867 37.500 0.00 0.00 41.25 2.71
3078 9195 2.365293 GCAACAATCCACTTTTCACCCT 59.635 45.455 0.00 0.00 0.00 4.34
3098 9215 4.158025 TGAGCTACAACCTAGAACTACTGC 59.842 45.833 0.00 0.00 0.00 4.40
3287 9406 7.683704 GCATTCAATTCTACAAGATGCTCCATT 60.684 37.037 0.00 0.00 0.00 3.16
3288 9407 6.238953 GCATTCAATTCTACAAGATGCTCCAT 60.239 38.462 0.00 0.00 0.00 3.41
3289 9408 5.066893 GCATTCAATTCTACAAGATGCTCCA 59.933 40.000 0.00 0.00 0.00 3.86
3290 9409 5.066893 TGCATTCAATTCTACAAGATGCTCC 59.933 40.000 0.00 0.00 34.06 4.70
3291 9410 5.970023 GTGCATTCAATTCTACAAGATGCTC 59.030 40.000 0.00 0.00 34.06 4.26
3292 9411 5.163581 GGTGCATTCAATTCTACAAGATGCT 60.164 40.000 0.00 0.00 34.06 3.79
3293 9412 5.039333 GGTGCATTCAATTCTACAAGATGC 58.961 41.667 0.00 0.00 0.00 3.91
3294 9413 6.198650 TGGTGCATTCAATTCTACAAGATG 57.801 37.500 0.00 0.00 0.00 2.90
3295 9414 6.350445 GGTTGGTGCATTCAATTCTACAAGAT 60.350 38.462 8.36 0.00 0.00 2.40
3296 9415 5.048083 GGTTGGTGCATTCAATTCTACAAGA 60.048 40.000 8.36 0.00 0.00 3.02
3297 9416 5.163513 GGTTGGTGCATTCAATTCTACAAG 58.836 41.667 8.36 0.00 0.00 3.16
3298 9417 4.586421 TGGTTGGTGCATTCAATTCTACAA 59.414 37.500 8.36 0.00 0.00 2.41
3299 9418 4.148079 TGGTTGGTGCATTCAATTCTACA 58.852 39.130 8.36 2.59 0.00 2.74
3300 9419 4.218417 ACTGGTTGGTGCATTCAATTCTAC 59.782 41.667 8.36 0.00 0.00 2.59
3301 9420 4.406456 ACTGGTTGGTGCATTCAATTCTA 58.594 39.130 8.36 0.00 0.00 2.10
3302 9421 3.233507 ACTGGTTGGTGCATTCAATTCT 58.766 40.909 8.36 0.00 0.00 2.40
3303 9422 3.665745 ACTGGTTGGTGCATTCAATTC 57.334 42.857 8.36 5.77 0.00 2.17
3304 9423 3.642848 AGAACTGGTTGGTGCATTCAATT 59.357 39.130 8.36 0.48 0.00 2.32
3305 9424 3.233507 AGAACTGGTTGGTGCATTCAAT 58.766 40.909 8.36 0.00 0.00 2.57
3306 9425 2.622942 GAGAACTGGTTGGTGCATTCAA 59.377 45.455 0.00 0.00 0.00 2.69
3307 9426 2.229792 GAGAACTGGTTGGTGCATTCA 58.770 47.619 0.00 0.00 0.00 2.57
3308 9427 1.541588 GGAGAACTGGTTGGTGCATTC 59.458 52.381 0.00 0.00 0.00 2.67
3309 9428 1.620822 GGAGAACTGGTTGGTGCATT 58.379 50.000 0.00 0.00 0.00 3.56
3310 9429 0.251341 GGGAGAACTGGTTGGTGCAT 60.251 55.000 0.00 0.00 0.00 3.96
3311 9430 1.150536 GGGAGAACTGGTTGGTGCA 59.849 57.895 0.00 0.00 0.00 4.57
3312 9431 0.467290 TTGGGAGAACTGGTTGGTGC 60.467 55.000 0.00 0.00 0.00 5.01
3313 9432 2.065899 TTTGGGAGAACTGGTTGGTG 57.934 50.000 0.00 0.00 0.00 4.17
3314 9433 2.666317 CTTTTGGGAGAACTGGTTGGT 58.334 47.619 0.00 0.00 0.00 3.67
3315 9434 1.341209 GCTTTTGGGAGAACTGGTTGG 59.659 52.381 0.00 0.00 0.00 3.77
3316 9435 2.294512 GAGCTTTTGGGAGAACTGGTTG 59.705 50.000 0.00 0.00 0.00 3.77
3317 9436 2.091885 TGAGCTTTTGGGAGAACTGGTT 60.092 45.455 0.00 0.00 0.00 3.67
3318 9437 1.494721 TGAGCTTTTGGGAGAACTGGT 59.505 47.619 0.00 0.00 0.00 4.00
3319 9438 2.276732 TGAGCTTTTGGGAGAACTGG 57.723 50.000 0.00 0.00 0.00 4.00
3320 9439 2.030451 GCTTGAGCTTTTGGGAGAACTG 60.030 50.000 0.00 0.00 38.21 3.16
3321 9440 2.234143 GCTTGAGCTTTTGGGAGAACT 58.766 47.619 0.00 0.00 38.21 3.01
3322 9441 2.713895 GCTTGAGCTTTTGGGAGAAC 57.286 50.000 0.00 0.00 38.21 3.01
3334 9453 1.475682 CCTTTTCCCATCAGCTTGAGC 59.524 52.381 0.00 0.00 42.49 4.26
3335 9454 2.490903 CACCTTTTCCCATCAGCTTGAG 59.509 50.000 0.00 0.00 0.00 3.02
3336 9455 2.517959 CACCTTTTCCCATCAGCTTGA 58.482 47.619 0.00 0.00 0.00 3.02
3337 9456 1.547372 CCACCTTTTCCCATCAGCTTG 59.453 52.381 0.00 0.00 0.00 4.01
3338 9457 1.550869 CCCACCTTTTCCCATCAGCTT 60.551 52.381 0.00 0.00 0.00 3.74
3339 9458 0.040204 CCCACCTTTTCCCATCAGCT 59.960 55.000 0.00 0.00 0.00 4.24
3340 9459 1.607801 GCCCACCTTTTCCCATCAGC 61.608 60.000 0.00 0.00 0.00 4.26
3341 9460 0.040204 AGCCCACCTTTTCCCATCAG 59.960 55.000 0.00 0.00 0.00 2.90
3342 9461 1.377690 TAGCCCACCTTTTCCCATCA 58.622 50.000 0.00 0.00 0.00 3.07
3343 9462 2.310538 CATAGCCCACCTTTTCCCATC 58.689 52.381 0.00 0.00 0.00 3.51
3344 9463 1.689258 GCATAGCCCACCTTTTCCCAT 60.689 52.381 0.00 0.00 0.00 4.00
3345 9464 0.324275 GCATAGCCCACCTTTTCCCA 60.324 55.000 0.00 0.00 0.00 4.37
3346 9465 0.324275 TGCATAGCCCACCTTTTCCC 60.324 55.000 0.00 0.00 0.00 3.97
3347 9466 1.780503 ATGCATAGCCCACCTTTTCC 58.219 50.000 0.00 0.00 0.00 3.13
3348 9467 3.893326 AAATGCATAGCCCACCTTTTC 57.107 42.857 0.00 0.00 0.00 2.29
3349 9468 6.136155 AGTATAAATGCATAGCCCACCTTTT 58.864 36.000 0.00 0.00 0.00 2.27
3350 9469 5.705400 AGTATAAATGCATAGCCCACCTTT 58.295 37.500 0.00 0.00 0.00 3.11
3351 9470 5.324832 AGTATAAATGCATAGCCCACCTT 57.675 39.130 0.00 0.00 0.00 3.50
3352 9471 5.163099 TGAAGTATAAATGCATAGCCCACCT 60.163 40.000 0.00 0.00 0.00 4.00
3353 9472 5.070001 TGAAGTATAAATGCATAGCCCACC 58.930 41.667 0.00 0.00 0.00 4.61
3354 9473 6.633500 TTGAAGTATAAATGCATAGCCCAC 57.367 37.500 0.00 0.00 0.00 4.61
3355 9474 5.241506 GCTTGAAGTATAAATGCATAGCCCA 59.758 40.000 0.00 0.00 0.00 5.36
3356 9475 5.335976 GGCTTGAAGTATAAATGCATAGCCC 60.336 44.000 15.79 2.38 38.74 5.19
3357 9476 5.474876 AGGCTTGAAGTATAAATGCATAGCC 59.525 40.000 18.03 18.03 43.58 3.93
3358 9477 6.566197 AGGCTTGAAGTATAAATGCATAGC 57.434 37.500 0.00 0.33 0.00 2.97
3361 9480 8.917088 ACATTTAGGCTTGAAGTATAAATGCAT 58.083 29.630 26.24 15.52 43.05 3.96
3362 9481 8.190122 CACATTTAGGCTTGAAGTATAAATGCA 58.810 33.333 26.24 0.00 43.05 3.96
3363 9482 7.649306 CCACATTTAGGCTTGAAGTATAAATGC 59.351 37.037 26.24 3.24 43.05 3.56
3364 9483 8.902806 TCCACATTTAGGCTTGAAGTATAAATG 58.097 33.333 25.49 25.49 44.04 2.32
3365 9484 8.903820 GTCCACATTTAGGCTTGAAGTATAAAT 58.096 33.333 0.00 9.48 0.00 1.40
3366 9485 8.107095 AGTCCACATTTAGGCTTGAAGTATAAA 58.893 33.333 0.00 0.70 0.00 1.40
3367 9486 7.552687 CAGTCCACATTTAGGCTTGAAGTATAA 59.447 37.037 0.00 0.00 0.00 0.98
3368 9487 7.047891 CAGTCCACATTTAGGCTTGAAGTATA 58.952 38.462 0.00 0.00 0.00 1.47
3369 9488 5.882557 CAGTCCACATTTAGGCTTGAAGTAT 59.117 40.000 0.00 0.00 0.00 2.12
3370 9489 5.012664 TCAGTCCACATTTAGGCTTGAAGTA 59.987 40.000 0.00 0.00 0.00 2.24
3371 9490 4.074970 CAGTCCACATTTAGGCTTGAAGT 58.925 43.478 0.00 0.00 0.00 3.01
3372 9491 4.326826 TCAGTCCACATTTAGGCTTGAAG 58.673 43.478 0.00 0.00 0.00 3.02
3373 9492 4.365514 TCAGTCCACATTTAGGCTTGAA 57.634 40.909 0.00 0.00 0.00 2.69
3374 9493 4.365514 TTCAGTCCACATTTAGGCTTGA 57.634 40.909 0.00 0.00 0.00 3.02
3375 9494 4.520492 ACTTTCAGTCCACATTTAGGCTTG 59.480 41.667 0.00 0.00 0.00 4.01
3376 9495 4.520492 CACTTTCAGTCCACATTTAGGCTT 59.480 41.667 0.00 0.00 0.00 4.35
3377 9496 4.074970 CACTTTCAGTCCACATTTAGGCT 58.925 43.478 0.00 0.00 0.00 4.58
3378 9497 3.191371 CCACTTTCAGTCCACATTTAGGC 59.809 47.826 0.00 0.00 0.00 3.93
3379 9498 3.758554 CCCACTTTCAGTCCACATTTAGG 59.241 47.826 0.00 0.00 0.00 2.69
3380 9499 3.191371 GCCCACTTTCAGTCCACATTTAG 59.809 47.826 0.00 0.00 0.00 1.85
3381 9500 3.153919 GCCCACTTTCAGTCCACATTTA 58.846 45.455 0.00 0.00 0.00 1.40
3382 9501 1.963515 GCCCACTTTCAGTCCACATTT 59.036 47.619 0.00 0.00 0.00 2.32
3383 9502 1.145738 AGCCCACTTTCAGTCCACATT 59.854 47.619 0.00 0.00 0.00 2.71
3384 9503 0.773644 AGCCCACTTTCAGTCCACAT 59.226 50.000 0.00 0.00 0.00 3.21
3385 9504 0.179020 CAGCCCACTTTCAGTCCACA 60.179 55.000 0.00 0.00 0.00 4.17
3386 9505 1.518903 GCAGCCCACTTTCAGTCCAC 61.519 60.000 0.00 0.00 0.00 4.02
3387 9506 1.228245 GCAGCCCACTTTCAGTCCA 60.228 57.895 0.00 0.00 0.00 4.02
3388 9507 0.823356 TTGCAGCCCACTTTCAGTCC 60.823 55.000 0.00 0.00 0.00 3.85
3389 9508 1.251251 ATTGCAGCCCACTTTCAGTC 58.749 50.000 0.00 0.00 0.00 3.51
3390 9509 1.708341 AATTGCAGCCCACTTTCAGT 58.292 45.000 0.00 0.00 0.00 3.41
3391 9510 2.825861 AAATTGCAGCCCACTTTCAG 57.174 45.000 0.00 0.00 0.00 3.02
3392 9511 3.557228 AAAAATTGCAGCCCACTTTCA 57.443 38.095 0.00 0.00 0.00 2.69
3393 9512 6.558771 AAATAAAAATTGCAGCCCACTTTC 57.441 33.333 0.00 0.00 0.00 2.62
3394 9513 6.957920 AAAATAAAAATTGCAGCCCACTTT 57.042 29.167 0.00 0.00 0.00 2.66
3395 9514 6.957920 AAAAATAAAAATTGCAGCCCACTT 57.042 29.167 0.00 0.00 0.00 3.16
3507 9626 0.040204 ACCTTTCCCCATCAGCTTGG 59.960 55.000 0.00 0.00 36.46 3.61
3530 9649 8.629158 GGGATGTGTTGAAGTATAAATGCATAA 58.371 33.333 0.00 0.00 0.00 1.90
3751 9872 3.450028 CAGAGTAGCTGCAGGTTCC 57.550 57.895 25.47 14.94 37.90 3.62
3888 10010 5.180271 TCCCGAATATGAGGTGTAAACAAC 58.820 41.667 0.00 0.00 0.00 3.32
3901 10023 4.055360 TGCAACGTAGATTCCCGAATATG 58.945 43.478 0.00 0.00 0.00 1.78
4364 10502 6.676950 TGTCACTTGGCAAAATTATACTGTG 58.323 36.000 0.00 2.79 0.00 3.66
4415 10568 2.519377 TGGGTACGTGAACAGAAGTG 57.481 50.000 0.00 0.00 0.00 3.16
4416 10569 3.070446 TGAATGGGTACGTGAACAGAAGT 59.930 43.478 0.00 0.00 0.00 3.01
4417 10570 3.659786 TGAATGGGTACGTGAACAGAAG 58.340 45.455 0.00 0.00 0.00 2.85
4418 10571 3.755112 TGAATGGGTACGTGAACAGAA 57.245 42.857 0.00 0.00 0.00 3.02
4419 10572 3.595173 CATGAATGGGTACGTGAACAGA 58.405 45.455 0.00 0.00 0.00 3.41
4420 10573 2.095853 GCATGAATGGGTACGTGAACAG 59.904 50.000 0.00 0.00 0.00 3.16
4421 10574 2.080693 GCATGAATGGGTACGTGAACA 58.919 47.619 0.00 0.00 0.00 3.18
4428 12286 2.733956 TGGGAAAGCATGAATGGGTAC 58.266 47.619 0.00 0.00 0.00 3.34
4689 12594 9.956640 TTTGGCATCAACAAGGAAATATAATTT 57.043 25.926 0.00 0.00 31.78 1.82
4720 12625 2.997980 TGACAACCTGACAATGTGTGT 58.002 42.857 0.00 0.00 45.74 3.72
4721 12626 3.694734 GTTGACAACCTGACAATGTGTG 58.305 45.455 7.10 0.00 34.88 3.82
4755 12660 6.779385 CACATGTGCAATAACTGTTTATCG 57.221 37.500 13.94 0.00 0.00 2.92
4878 12783 4.196193 TGCCTAATTTATCCACAAGACCG 58.804 43.478 0.00 0.00 0.00 4.79
4990 13060 5.538053 TGGAGATATTCTAGCAAGGTGAGAG 59.462 44.000 0.00 0.00 0.00 3.20
5064 13134 5.723672 TCAGAAGGTGGTTAAGTCAGTAG 57.276 43.478 0.00 0.00 0.00 2.57
5073 13143 9.231297 CATTAGAGATTTTTCAGAAGGTGGTTA 57.769 33.333 0.00 0.00 0.00 2.85
5115 13185 1.760613 TCGAACAACCAGACTTCCTGT 59.239 47.619 0.00 0.00 41.33 4.00
5133 13203 5.750067 CCTCAAATGGCAGGAAAATTATTCG 59.250 40.000 0.00 0.00 30.32 3.34
5414 13484 8.225603 TGGAAGGAAAACTATATTTCATGAGC 57.774 34.615 0.00 0.00 40.34 4.26
5508 13578 6.628844 GCAGAAAGTGGGCAGAAATATCAAAT 60.629 38.462 0.00 0.00 0.00 2.32
5804 13882 6.155475 ACAGCAGCACCAAACTAAAAATAA 57.845 33.333 0.00 0.00 0.00 1.40
5854 13932 5.643379 TTTGCTAAGAGTTTAATGGCCAG 57.357 39.130 13.05 0.00 0.00 4.85
6091 14181 2.887152 GGAGGTTGAAGTTGACAGCAAT 59.113 45.455 0.00 0.00 36.22 3.56
6122 14212 7.180408 AGGGCTGTTAACGTATCTAATATCCAT 59.820 37.037 0.26 0.00 0.00 3.41
6295 14385 7.899973 ACAAACCATTCATTGCTAAGAAGATT 58.100 30.769 0.00 0.00 0.00 2.40
6463 14555 5.986741 CCGGGTTTGCAAAAACTAGTTTAAT 59.013 36.000 20.83 10.56 33.37 1.40
6486 14578 1.282157 ACTGGGACTGTTATGCCTTCC 59.718 52.381 0.00 0.00 37.12 3.46
6580 14684 7.093945 GGCTGGAAAGAAATTATAACTGTTCCA 60.094 37.037 13.24 13.24 40.63 3.53
6815 14941 5.876460 GTCAGATTTGCCATGCCTAAAAATT 59.124 36.000 0.00 0.00 0.00 1.82
6840 14966 9.971744 GTGACAATATAAATTGCCATGAAAAAC 57.028 29.630 0.00 0.00 45.41 2.43
6864 14990 6.321873 CAAACTAAATTTGCCATCATCGTG 57.678 37.500 0.00 0.00 41.30 4.35
6887 15013 3.127533 AGGAATCGCCGTGCTTGC 61.128 61.111 0.00 0.00 43.43 4.01
6926 15052 1.065551 GTTGGCGAGCATGGTAAATCC 59.934 52.381 0.00 0.00 0.00 3.01
6932 15058 1.165270 GTTTAGTTGGCGAGCATGGT 58.835 50.000 0.00 0.00 0.00 3.55
6973 15099 5.240121 GTCAGATTTTTGACCATGGCAAAT 58.760 37.500 25.12 18.09 41.24 2.32
6974 15100 4.630111 GTCAGATTTTTGACCATGGCAAA 58.370 39.130 22.50 22.50 41.24 3.68
6975 15101 3.305267 CGTCAGATTTTTGACCATGGCAA 60.305 43.478 13.04 14.28 43.56 4.52
6976 15102 2.228582 CGTCAGATTTTTGACCATGGCA 59.771 45.455 13.04 8.31 43.56 4.92
6977 15103 2.228822 ACGTCAGATTTTTGACCATGGC 59.771 45.455 13.04 5.35 43.56 4.40
6978 15104 3.501828 TGACGTCAGATTTTTGACCATGG 59.498 43.478 15.76 11.19 43.56 3.66
6979 15105 4.715896 CTGACGTCAGATTTTTGACCATG 58.284 43.478 36.73 8.45 46.59 3.66
7020 15146 7.604927 ACCAGTAGCATATTTCTTGTTCGTAAA 59.395 33.333 0.00 0.00 0.00 2.01
7107 15235 4.100529 GTCATTCATGCGGAACTTCATTG 58.899 43.478 0.00 0.00 38.60 2.82
7316 15446 8.668510 AAACAAGGATAGCATAGTCATTACTG 57.331 34.615 0.00 0.00 36.36 2.74
7522 15660 4.413520 AGCCCTGTAAATATGTCATCAGGT 59.586 41.667 13.66 0.00 40.26 4.00
7523 15661 4.978099 AGCCCTGTAAATATGTCATCAGG 58.022 43.478 9.56 9.56 41.17 3.86
7800 15948 9.490379 TTTGGTCAAAGCTTACAAAGTTTTTAA 57.510 25.926 0.00 0.00 39.48 1.52
7801 15949 9.660180 ATTTGGTCAAAGCTTACAAAGTTTTTA 57.340 25.926 17.55 0.00 39.48 1.52
8020 16198 0.392706 TCTGCTCGAGAAACAAGCCA 59.607 50.000 18.75 0.33 35.12 4.75
8150 16329 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
8151 16330 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
8152 16331 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
8153 16332 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
8154 16333 4.504461 CGAGTCATCTATTTTGGAACGGAG 59.496 45.833 0.00 0.00 0.00 4.63
8155 16334 4.158949 TCGAGTCATCTATTTTGGAACGGA 59.841 41.667 0.00 0.00 0.00 4.69
8156 16335 4.267928 GTCGAGTCATCTATTTTGGAACGG 59.732 45.833 0.00 0.00 0.00 4.44
8157 16336 5.103000 AGTCGAGTCATCTATTTTGGAACG 58.897 41.667 0.00 0.00 0.00 3.95
8158 16337 6.969828 AAGTCGAGTCATCTATTTTGGAAC 57.030 37.500 0.00 0.00 0.00 3.62
8159 16338 6.934645 ACAAAGTCGAGTCATCTATTTTGGAA 59.065 34.615 0.00 0.00 0.00 3.53
8160 16339 6.464222 ACAAAGTCGAGTCATCTATTTTGGA 58.536 36.000 0.00 0.00 0.00 3.53
8161 16340 6.727824 ACAAAGTCGAGTCATCTATTTTGG 57.272 37.500 0.00 0.00 0.00 3.28
8162 16341 8.467402 AGTACAAAGTCGAGTCATCTATTTTG 57.533 34.615 0.00 0.00 0.00 2.44
8164 16343 9.570488 GTTAGTACAAAGTCGAGTCATCTATTT 57.430 33.333 0.00 0.00 0.00 1.40
8165 16344 8.189460 GGTTAGTACAAAGTCGAGTCATCTATT 58.811 37.037 0.00 0.00 0.00 1.73
8166 16345 7.338703 TGGTTAGTACAAAGTCGAGTCATCTAT 59.661 37.037 0.00 0.00 0.00 1.98
8167 16346 6.656270 TGGTTAGTACAAAGTCGAGTCATCTA 59.344 38.462 0.00 0.00 0.00 1.98
8168 16347 5.475909 TGGTTAGTACAAAGTCGAGTCATCT 59.524 40.000 0.00 0.00 0.00 2.90
8169 16348 5.706916 TGGTTAGTACAAAGTCGAGTCATC 58.293 41.667 0.00 0.00 0.00 2.92
8170 16349 5.717078 TGGTTAGTACAAAGTCGAGTCAT 57.283 39.130 0.00 0.00 0.00 3.06
8171 16350 5.518848 TTGGTTAGTACAAAGTCGAGTCA 57.481 39.130 0.00 0.00 0.00 3.41
8172 16351 6.449448 CTTTGGTTAGTACAAAGTCGAGTC 57.551 41.667 9.16 0.00 45.94 3.36
8180 16359 7.990886 AGATGACTCAACTTTGGTTAGTACAAA 59.009 33.333 0.00 0.00 36.49 2.83
8181 16360 7.506114 AGATGACTCAACTTTGGTTAGTACAA 58.494 34.615 0.00 0.00 33.88 2.41
8182 16361 7.062749 AGATGACTCAACTTTGGTTAGTACA 57.937 36.000 0.00 0.00 33.88 2.90
8183 16362 9.654663 AATAGATGACTCAACTTTGGTTAGTAC 57.345 33.333 0.00 0.00 33.88 2.73
8185 16364 9.574516 AAAATAGATGACTCAACTTTGGTTAGT 57.425 29.630 0.00 0.00 33.88 2.24
8186 16365 9.831737 CAAAATAGATGACTCAACTTTGGTTAG 57.168 33.333 0.00 0.00 33.88 2.34
8187 16366 8.792633 CCAAAATAGATGACTCAACTTTGGTTA 58.207 33.333 8.90 0.00 33.88 2.85
8188 16367 7.505585 TCCAAAATAGATGACTCAACTTTGGTT 59.494 33.333 13.78 0.00 37.20 3.67
8189 16368 7.004086 TCCAAAATAGATGACTCAACTTTGGT 58.996 34.615 13.78 0.00 37.20 3.67
8190 16369 7.452880 TCCAAAATAGATGACTCAACTTTGG 57.547 36.000 10.15 10.15 37.23 3.28
8191 16370 7.535258 CGTTCCAAAATAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
8192 16371 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
8193 16372 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
8194 16373 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
8195 16374 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
8196 16375 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
8197 16376 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
8198 16377 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
8199 16378 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
8200 16379 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
8201 16380 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
8202 16381 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
8203 16382 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
8204 16383 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
8205 16384 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
8206 16385 5.502089 TTTACTCCCTCCGTTCCAAAATA 57.498 39.130 0.00 0.00 0.00 1.40
8207 16386 4.376225 TTTACTCCCTCCGTTCCAAAAT 57.624 40.909 0.00 0.00 0.00 1.82
8208 16387 3.860968 TTTACTCCCTCCGTTCCAAAA 57.139 42.857 0.00 0.00 0.00 2.44
8209 16388 3.328343 TCATTTACTCCCTCCGTTCCAAA 59.672 43.478 0.00 0.00 0.00 3.28
8210 16389 2.907696 TCATTTACTCCCTCCGTTCCAA 59.092 45.455 0.00 0.00 0.00 3.53
8211 16390 2.542550 TCATTTACTCCCTCCGTTCCA 58.457 47.619 0.00 0.00 0.00 3.53
8212 16391 3.840124 ATCATTTACTCCCTCCGTTCC 57.160 47.619 0.00 0.00 0.00 3.62
8213 16392 6.427242 GGAAATATCATTTACTCCCTCCGTTC 59.573 42.308 0.00 0.00 0.00 3.95
8214 16393 6.126594 TGGAAATATCATTTACTCCCTCCGTT 60.127 38.462 0.00 0.00 0.00 4.44
8215 16394 5.368523 TGGAAATATCATTTACTCCCTCCGT 59.631 40.000 0.00 0.00 0.00 4.69
8216 16395 5.865085 TGGAAATATCATTTACTCCCTCCG 58.135 41.667 0.00 0.00 0.00 4.63
8217 16396 8.383175 TGTATGGAAATATCATTTACTCCCTCC 58.617 37.037 0.00 0.00 0.00 4.30
8218 16397 9.793259 TTGTATGGAAATATCATTTACTCCCTC 57.207 33.333 0.00 0.00 0.00 4.30
8219 16398 9.574516 GTTGTATGGAAATATCATTTACTCCCT 57.425 33.333 0.00 0.00 0.00 4.20
8220 16399 9.349713 TGTTGTATGGAAATATCATTTACTCCC 57.650 33.333 0.00 0.00 0.00 4.30
8224 16403 9.117145 CGCATGTTGTATGGAAATATCATTTAC 57.883 33.333 0.00 0.00 0.00 2.01
8225 16404 8.845227 ACGCATGTTGTATGGAAATATCATTTA 58.155 29.630 0.00 0.00 0.00 1.40
8226 16405 7.648908 CACGCATGTTGTATGGAAATATCATTT 59.351 33.333 0.00 0.00 0.00 2.32
8248 16427 6.185399 CAGTATACAAGAATTTACAGCACGC 58.815 40.000 5.50 0.00 0.00 5.34
8286 16465 1.920325 CTGGGTCCAGCTCCCTTCA 60.920 63.158 10.20 0.00 44.84 3.02
8322 16501 6.241207 TCGGTCAATTTGATCTGTTCTTTC 57.759 37.500 7.99 0.00 0.00 2.62
8353 16532 0.461870 TTCACTGCATAGCGGCGATT 60.462 50.000 12.98 0.00 38.71 3.34
8459 16638 8.965819 TGCTGCAATTTAATCTTAATAAGTCCA 58.034 29.630 0.00 0.00 0.00 4.02
8525 16704 4.650754 TTCTATCGGAACTCAGCTAACC 57.349 45.455 0.00 0.00 0.00 2.85
8646 16833 4.272489 TGGGAGTAGGCATGAAAAATGAG 58.728 43.478 0.00 0.00 0.00 2.90
8684 16871 1.002134 CCCAGGACACGCAATCCTT 60.002 57.895 0.07 0.00 44.64 3.36
8692 16879 2.281484 CCCACAACCCAGGACACG 60.281 66.667 0.00 0.00 0.00 4.49
8695 16882 1.228459 GTTCCCCACAACCCAGGAC 60.228 63.158 0.00 0.00 0.00 3.85
8710 16897 2.857592 TGTTAGGGCTCGATACGTTC 57.142 50.000 0.00 0.00 0.00 3.95
8718 16905 4.766404 AAGACAAAATTGTTAGGGCTCG 57.234 40.909 0.00 0.00 42.43 5.03
8719 16906 4.686091 GCAAAGACAAAATTGTTAGGGCTC 59.314 41.667 0.00 0.00 42.43 4.70
8720 16907 4.503123 GGCAAAGACAAAATTGTTAGGGCT 60.503 41.667 0.00 0.00 42.43 5.19
8721 16908 3.745975 GGCAAAGACAAAATTGTTAGGGC 59.254 43.478 0.00 3.45 42.43 5.19
8722 16909 3.987220 CGGCAAAGACAAAATTGTTAGGG 59.013 43.478 0.00 0.00 42.43 3.53
8723 16910 4.865776 TCGGCAAAGACAAAATTGTTAGG 58.134 39.130 0.00 0.00 42.43 2.69
8724 16911 5.920273 ACATCGGCAAAGACAAAATTGTTAG 59.080 36.000 0.00 0.00 42.43 2.34
8725 16912 5.837437 ACATCGGCAAAGACAAAATTGTTA 58.163 33.333 0.00 0.00 42.43 2.41
8726 16913 4.692228 ACATCGGCAAAGACAAAATTGTT 58.308 34.783 0.00 0.00 42.43 2.83
8727 16914 4.298332 GACATCGGCAAAGACAAAATTGT 58.702 39.130 0.00 0.00 45.65 2.71
8728 16915 3.361644 CGACATCGGCAAAGACAAAATTG 59.638 43.478 0.00 0.00 35.37 2.32
8729 16916 3.252215 TCGACATCGGCAAAGACAAAATT 59.748 39.130 0.73 0.00 40.29 1.82
8730 16917 2.811431 TCGACATCGGCAAAGACAAAAT 59.189 40.909 0.73 0.00 40.29 1.82
8731 16918 2.214347 TCGACATCGGCAAAGACAAAA 58.786 42.857 0.73 0.00 40.29 2.44
8732 16919 1.798223 CTCGACATCGGCAAAGACAAA 59.202 47.619 0.73 0.00 40.29 2.83
8733 16920 1.428448 CTCGACATCGGCAAAGACAA 58.572 50.000 0.73 0.00 40.29 3.18
8734 16921 0.389817 CCTCGACATCGGCAAAGACA 60.390 55.000 0.73 0.00 40.29 3.41
8735 16922 0.389948 ACCTCGACATCGGCAAAGAC 60.390 55.000 0.73 0.00 40.29 3.01
8736 16923 0.320374 AACCTCGACATCGGCAAAGA 59.680 50.000 0.73 0.00 40.29 2.52
8737 16924 0.721718 GAACCTCGACATCGGCAAAG 59.278 55.000 0.73 0.00 40.29 2.77
8738 16925 0.320374 AGAACCTCGACATCGGCAAA 59.680 50.000 0.73 0.00 40.29 3.68
8739 16926 1.179152 TAGAACCTCGACATCGGCAA 58.821 50.000 0.73 0.00 40.29 4.52
8740 16927 1.399714 ATAGAACCTCGACATCGGCA 58.600 50.000 0.73 0.00 40.29 5.69
8741 16928 2.510768 AATAGAACCTCGACATCGGC 57.489 50.000 0.73 0.00 40.29 5.54
8742 16929 3.782046 ACAAATAGAACCTCGACATCGG 58.218 45.455 0.73 0.00 40.29 4.18
8743 16930 5.803461 TGTAACAAATAGAACCTCGACATCG 59.197 40.000 0.00 0.00 41.45 3.84
8744 16931 6.990546 GTGTAACAAATAGAACCTCGACATC 58.009 40.000 0.00 0.00 36.32 3.06
8745 16932 6.963049 GTGTAACAAATAGAACCTCGACAT 57.037 37.500 0.00 0.00 36.32 3.06
8762 16949 0.320697 AACCGCCTCTCCTGTGTAAC 59.679 55.000 0.00 0.00 37.35 2.50
8763 16950 1.053424 AAACCGCCTCTCCTGTGTAA 58.947 50.000 0.00 0.00 0.00 2.41
8764 16951 1.053424 AAAACCGCCTCTCCTGTGTA 58.947 50.000 0.00 0.00 0.00 2.90
8765 16952 0.535102 CAAAACCGCCTCTCCTGTGT 60.535 55.000 0.00 0.00 0.00 3.72
8766 16953 1.856265 GCAAAACCGCCTCTCCTGTG 61.856 60.000 0.00 0.00 0.00 3.66
8767 16954 1.600916 GCAAAACCGCCTCTCCTGT 60.601 57.895 0.00 0.00 0.00 4.00
8768 16955 2.680913 CGCAAAACCGCCTCTCCTG 61.681 63.158 0.00 0.00 0.00 3.86
8769 16956 2.358737 CGCAAAACCGCCTCTCCT 60.359 61.111 0.00 0.00 0.00 3.69
8777 16964 1.442520 CACATGGAGCGCAAAACCG 60.443 57.895 11.47 0.00 0.00 4.44
8794 16981 6.183360 GGTTCAAAAGGCATAATTACGATCCA 60.183 38.462 0.00 0.00 0.00 3.41
8890 17077 5.772825 AATGGCATTAGCAACGATAATGT 57.227 34.783 11.81 0.00 41.92 2.71
8943 17130 6.012858 ACCATCCCTTAATAAGTTGTGACAGA 60.013 38.462 0.00 0.00 0.00 3.41
8944 17131 6.180472 ACCATCCCTTAATAAGTTGTGACAG 58.820 40.000 0.00 0.00 0.00 3.51
8945 17132 6.134535 ACCATCCCTTAATAAGTTGTGACA 57.865 37.500 0.00 0.00 0.00 3.58
8946 17133 7.462571 AAACCATCCCTTAATAAGTTGTGAC 57.537 36.000 0.00 0.00 0.00 3.67
8980 17167 5.867716 AGGCGTGTTATTAAGTGTAGACAAG 59.132 40.000 0.00 0.00 0.00 3.16
8985 17172 6.533723 TGATTGAGGCGTGTTATTAAGTGTAG 59.466 38.462 0.00 0.00 0.00 2.74
9000 17187 4.850859 TTAAACGTACATGATTGAGGCG 57.149 40.909 0.00 0.00 0.00 5.52
9001 17188 6.358118 TCATTAAACGTACATGATTGAGGC 57.642 37.500 0.00 0.00 0.00 4.70
9002 17189 8.141835 TGATCATTAAACGTACATGATTGAGG 57.858 34.615 14.79 0.00 37.70 3.86
9003 17190 9.986833 TTTGATCATTAAACGTACATGATTGAG 57.013 29.630 14.79 0.00 37.70 3.02
9004 17191 9.767684 GTTTGATCATTAAACGTACATGATTGA 57.232 29.630 14.79 7.24 37.70 2.57
9005 17192 9.009327 GGTTTGATCATTAAACGTACATGATTG 57.991 33.333 14.79 0.00 37.70 2.67
9006 17193 8.188139 GGGTTTGATCATTAAACGTACATGATT 58.812 33.333 14.79 0.00 37.70 2.57
9007 17194 7.556275 AGGGTTTGATCATTAAACGTACATGAT 59.444 33.333 13.94 13.94 39.81 2.45
9008 17195 6.882140 AGGGTTTGATCATTAAACGTACATGA 59.118 34.615 0.00 6.68 38.57 3.07
9009 17196 7.083875 AGGGTTTGATCATTAAACGTACATG 57.916 36.000 0.00 0.00 38.57 3.21
9010 17197 7.281549 GGTAGGGTTTGATCATTAAACGTACAT 59.718 37.037 21.03 4.22 38.57 2.29
9011 17198 6.594937 GGTAGGGTTTGATCATTAAACGTACA 59.405 38.462 21.03 1.06 38.57 2.90
9012 17199 6.820152 AGGTAGGGTTTGATCATTAAACGTAC 59.180 38.462 15.15 15.15 38.57 3.67
9013 17200 6.819649 CAGGTAGGGTTTGATCATTAAACGTA 59.180 38.462 0.00 0.00 38.57 3.57
9014 17201 5.646360 CAGGTAGGGTTTGATCATTAAACGT 59.354 40.000 0.00 0.00 38.57 3.99
9015 17202 5.065988 CCAGGTAGGGTTTGATCATTAAACG 59.934 44.000 0.00 0.00 38.57 3.60
9016 17203 6.451064 CCAGGTAGGGTTTGATCATTAAAC 57.549 41.667 0.00 0.00 37.31 2.01
9031 17218 4.513406 TTAATTTAGTGCCCCAGGTAGG 57.487 45.455 0.00 0.00 37.03 3.18
9032 17219 5.299279 CACATTAATTTAGTGCCCCAGGTAG 59.701 44.000 0.00 0.00 0.00 3.18
9033 17220 5.197451 CACATTAATTTAGTGCCCCAGGTA 58.803 41.667 0.00 0.00 0.00 3.08
9034 17221 4.023291 CACATTAATTTAGTGCCCCAGGT 58.977 43.478 0.00 0.00 0.00 4.00
9035 17222 4.654091 CACATTAATTTAGTGCCCCAGG 57.346 45.455 0.00 0.00 0.00 4.45
9046 17233 9.661563 ACATGATCATTGAAAGCACATTAATTT 57.338 25.926 5.16 0.00 0.00 1.82
9049 17236 9.738832 CATACATGATCATTGAAAGCACATTAA 57.261 29.630 5.16 0.00 0.00 1.40
9050 17237 9.122779 TCATACATGATCATTGAAAGCACATTA 57.877 29.630 5.16 0.00 0.00 1.90
9051 17238 8.002984 TCATACATGATCATTGAAAGCACATT 57.997 30.769 5.16 0.00 0.00 2.71
9052 17239 7.576861 TCATACATGATCATTGAAAGCACAT 57.423 32.000 5.16 0.00 0.00 3.21
9053 17240 7.576861 ATCATACATGATCATTGAAAGCACA 57.423 32.000 5.16 0.00 43.72 4.57
9074 17261 4.568380 CCAGTTGGGAAAAGATGAGGATCA 60.568 45.833 0.00 0.00 46.59 2.92
9075 17262 3.950395 CCAGTTGGGAAAAGATGAGGATC 59.050 47.826 0.00 0.00 40.01 3.36
9076 17263 3.334881 ACCAGTTGGGAAAAGATGAGGAT 59.665 43.478 2.79 0.00 41.15 3.24
9077 17264 2.716424 ACCAGTTGGGAAAAGATGAGGA 59.284 45.455 2.79 0.00 41.15 3.71
9078 17265 2.821969 CACCAGTTGGGAAAAGATGAGG 59.178 50.000 2.79 0.00 41.15 3.86
9079 17266 3.754965 TCACCAGTTGGGAAAAGATGAG 58.245 45.455 2.79 0.00 41.15 2.90
9080 17267 3.874383 TCACCAGTTGGGAAAAGATGA 57.126 42.857 2.79 0.00 41.15 2.92
9081 17268 4.935352 TTTCACCAGTTGGGAAAAGATG 57.065 40.909 2.79 0.00 41.15 2.90
9082 17269 6.351286 GCATATTTCACCAGTTGGGAAAAGAT 60.351 38.462 14.51 9.10 41.15 2.40
9083 17270 5.047377 GCATATTTCACCAGTTGGGAAAAGA 60.047 40.000 14.51 7.64 41.15 2.52
9084 17271 5.170748 GCATATTTCACCAGTTGGGAAAAG 58.829 41.667 14.51 10.59 41.15 2.27
9085 17272 4.590647 TGCATATTTCACCAGTTGGGAAAA 59.409 37.500 14.51 9.51 41.15 2.29
9086 17273 4.155709 TGCATATTTCACCAGTTGGGAAA 58.844 39.130 13.51 13.51 41.15 3.13
9087 17274 3.772387 TGCATATTTCACCAGTTGGGAA 58.228 40.909 2.79 1.10 41.15 3.97
9088 17275 3.448093 TGCATATTTCACCAGTTGGGA 57.552 42.857 2.79 0.00 41.15 4.37


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.