Multiple sequence alignment - TraesCS3D01G387200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G387200 chr3D 100.000 7633 0 0 1 7633 502048727 502056359 0.000000e+00 14096.0
1 TraesCS3D01G387200 chr3D 92.857 56 4 0 3543 3598 12253083 12253138 1.770000e-11 82.4
2 TraesCS3D01G387200 chr3D 90.625 64 1 2 3538 3601 574387768 574387826 6.350000e-11 80.5
3 TraesCS3D01G387200 chr3B 94.439 4010 158 23 3595 7551 663186759 663190756 0.000000e+00 6109.0
4 TraesCS3D01G387200 chr3B 95.361 2910 103 16 635 3533 663183866 663186754 0.000000e+00 4597.0
5 TraesCS3D01G387200 chr3B 94.323 229 6 3 335 556 663183625 663183853 2.040000e-90 344.0
6 TraesCS3D01G387200 chr3B 84.967 306 19 6 37 338 663183291 663183573 1.250000e-72 285.0
7 TraesCS3D01G387200 chr3B 93.103 58 2 1 3541 3598 40184938 40184883 4.910000e-12 84.2
8 TraesCS3D01G387200 chr3B 92.727 55 4 0 7579 7633 69810402 69810348 6.350000e-11 80.5
9 TraesCS3D01G387200 chr3B 91.379 58 0 2 3541 3598 554547104 554547156 2.950000e-09 75.0
10 TraesCS3D01G387200 chr3B 95.652 46 2 0 7579 7624 662779293 662779248 2.950000e-09 75.0
11 TraesCS3D01G387200 chr3B 90.164 61 0 3 138 195 822885425 822885368 2.950000e-09 75.0
12 TraesCS3D01G387200 chr3A 94.831 3521 140 16 3597 7079 641406430 641409946 0.000000e+00 5456.0
13 TraesCS3D01G387200 chr3A 94.933 2921 102 25 635 3544 641403546 641406431 0.000000e+00 4532.0
14 TraesCS3D01G387200 chr3A 86.240 516 38 22 58 565 641403038 641403528 5.250000e-146 529.0
15 TraesCS3D01G387200 chr3A 81.875 160 26 3 7252 7409 641410062 641410220 1.730000e-26 132.0
16 TraesCS3D01G387200 chr3A 92.063 63 3 1 17 77 641402962 641403024 3.790000e-13 87.9
17 TraesCS3D01G387200 chr6A 98.246 57 1 0 3543 3599 260426861 260426917 4.870000e-17 100.0
18 TraesCS3D01G387200 chr6A 90.476 63 3 2 3541 3600 16383557 16383619 6.350000e-11 80.5
19 TraesCS3D01G387200 chr6A 84.848 66 4 4 563 623 31119596 31119660 2.300000e-05 62.1
20 TraesCS3D01G387200 chr6B 98.182 55 1 0 7579 7633 559024047 559024101 6.300000e-16 97.1
21 TraesCS3D01G387200 chr7D 94.828 58 0 1 3542 3599 400855178 400855232 3.790000e-13 87.9
22 TraesCS3D01G387200 chr6D 93.333 60 0 3 136 195 103006193 103006138 1.360000e-12 86.1
23 TraesCS3D01G387200 chr2D 89.552 67 6 1 564 630 70029111 70029046 4.910000e-12 84.2
24 TraesCS3D01G387200 chr2D 85.507 69 3 4 138 202 347465712 347465777 1.780000e-06 65.8
25 TraesCS3D01G387200 chr4D 92.857 56 4 0 3543 3598 505989116 505989061 1.770000e-11 82.4
26 TraesCS3D01G387200 chr2B 89.394 66 6 1 565 630 773921503 773921439 1.770000e-11 82.4
27 TraesCS3D01G387200 chr2B 95.918 49 2 0 564 612 765092958 765093006 6.350000e-11 80.5
28 TraesCS3D01G387200 chr2B 100.000 29 0 0 561 589 256228989 256228961 4.000000e-03 54.7
29 TraesCS3D01G387200 chr5A 94.231 52 3 0 154 205 48828302 48828251 6.350000e-11 80.5
30 TraesCS3D01G387200 chr5B 88.235 68 4 3 138 203 326911805 326911870 2.280000e-10 78.7
31 TraesCS3D01G387200 chr5B 88.679 53 6 0 563 615 693188990 693188938 1.780000e-06 65.8
32 TraesCS3D01G387200 chr1D 90.164 61 3 1 3539 3599 10816050 10816107 8.210000e-10 76.8
33 TraesCS3D01G387200 chr4A 89.655 58 0 4 141 195 619146834 619146780 1.370000e-07 69.4
34 TraesCS3D01G387200 chr4A 97.143 35 1 0 559 593 701281439 701281473 8.270000e-05 60.2
35 TraesCS3D01G387200 chr1A 89.655 58 0 5 138 195 333910795 333910846 1.370000e-07 69.4
36 TraesCS3D01G387200 chr4B 84.058 69 3 7 162 230 586248495 586248435 8.270000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G387200 chr3D 502048727 502056359 7632 False 14096.00 14096 100.0000 1 7633 1 chr3D.!!$F2 7632
1 TraesCS3D01G387200 chr3B 663183291 663190756 7465 False 2833.75 6109 92.2725 37 7551 4 chr3B.!!$F2 7514
2 TraesCS3D01G387200 chr3A 641402962 641410220 7258 False 2147.38 5456 89.9884 17 7409 5 chr3A.!!$F1 7392

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
528 660 0.100682 CCGGACAGACACTGATACCG 59.899 60.0 19.28 19.28 41.27 4.02 F
766 899 0.664466 GAAAAAGACCAGCGCAAGGC 60.664 55.0 17.61 6.62 44.05 4.35 F
2300 2441 0.391130 GCACTTGCGATCCTGTACCA 60.391 55.0 0.00 0.00 0.00 3.25 F
3552 3697 0.249657 GCTGCAATCTACTCCCTCCG 60.250 60.0 0.00 0.00 0.00 4.63 F
4349 4501 0.540454 CATGGGCAGCAGAGAGAGAA 59.460 55.0 0.00 0.00 0.00 2.87 F
4707 4864 0.038251 TAGCAGGGCTGATATTCGCG 60.038 55.0 0.00 0.00 40.10 5.87 F
6319 6501 0.655733 AAGAAACGGACAACTGCACG 59.344 50.0 0.00 0.00 0.00 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2300 2441 0.179045 GGCCATTGCACCGAGACTAT 60.179 55.000 0.00 0.00 40.13 2.12 R
2347 2488 0.877071 GTGTTGCTCACCATCACCAG 59.123 55.000 2.08 0.00 40.84 4.00 R
4076 4228 0.675633 CTTTTGCTGGGTTGACCTGG 59.324 55.000 0.00 0.00 41.11 4.45 R
4391 4543 1.294659 CCGAGCTTCCTGCAGACAAC 61.295 60.000 17.39 1.65 45.94 3.32 R
5666 5825 1.003223 GGTTCAACGACCCGAAACAAG 60.003 52.381 0.00 0.00 33.41 3.16 R
6435 6619 0.395586 AAGTGCAAGCTCAACACCCA 60.396 50.000 9.40 0.00 34.83 4.51 R
7570 7772 0.110147 CTCGCTATCGCCTTAGGACG 60.110 60.000 0.69 5.55 35.26 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.649986 CGCGCCCGGATTTGATCC 61.650 66.667 0.73 0.00 46.22 3.36
107 142 2.095110 TGCTTTCGATCAGTGGCATTTG 60.095 45.455 0.00 0.00 0.00 2.32
148 183 2.028130 CTTCGCTGATACTCCCTCTGT 58.972 52.381 0.00 0.00 0.00 3.41
149 184 1.393603 TCGCTGATACTCCCTCTGTG 58.606 55.000 0.00 0.00 0.00 3.66
150 185 1.064685 TCGCTGATACTCCCTCTGTGA 60.065 52.381 0.00 0.00 0.00 3.58
151 186 1.751351 CGCTGATACTCCCTCTGTGAA 59.249 52.381 0.00 0.00 0.00 3.18
152 187 2.223688 CGCTGATACTCCCTCTGTGAAG 60.224 54.545 0.00 0.00 0.00 3.02
202 267 9.638176 AAATGCTCTTATATTTCTTCATGGAGT 57.362 29.630 0.00 0.00 0.00 3.85
205 270 8.267183 TGCTCTTATATTTCTTCATGGAGTGAA 58.733 33.333 0.00 0.00 44.36 3.18
215 280 3.099905 TCATGGAGTGAAGGAGTACAGG 58.900 50.000 0.00 0.00 32.78 4.00
220 285 4.202641 TGGAGTGAAGGAGTACAGGAGTTA 60.203 45.833 0.00 0.00 0.00 2.24
234 299 4.272748 ACAGGAGTTAAGCTTTTTCGACAC 59.727 41.667 3.20 0.00 0.00 3.67
250 315 1.134560 GACACCGAGGCTCGACTTATT 59.865 52.381 36.47 14.80 43.74 1.40
254 319 1.136305 CCGAGGCTCGACTTATTTCCA 59.864 52.381 36.47 0.00 43.74 3.53
256 321 3.458189 CGAGGCTCGACTTATTTCCAAT 58.542 45.455 32.07 0.00 43.74 3.16
432 559 1.458209 ATATGCTTTGGGGCTGGCC 60.458 57.895 12.58 12.58 0.00 5.36
516 648 2.540101 GCATCTTTCGTTATCCGGACAG 59.460 50.000 6.12 0.00 37.11 3.51
517 649 3.737047 GCATCTTTCGTTATCCGGACAGA 60.737 47.826 6.12 0.28 37.11 3.41
518 650 3.498927 TCTTTCGTTATCCGGACAGAC 57.501 47.619 6.12 4.81 37.11 3.51
520 652 2.642139 TTCGTTATCCGGACAGACAC 57.358 50.000 6.12 0.00 37.11 3.67
521 653 1.830279 TCGTTATCCGGACAGACACT 58.170 50.000 6.12 0.00 37.11 3.55
522 654 1.471287 TCGTTATCCGGACAGACACTG 59.529 52.381 6.12 0.00 37.11 3.66
523 655 1.471287 CGTTATCCGGACAGACACTGA 59.529 52.381 6.12 0.00 35.18 3.41
524 656 2.099263 CGTTATCCGGACAGACACTGAT 59.901 50.000 6.12 0.00 35.18 2.90
528 660 0.100682 CCGGACAGACACTGATACCG 59.899 60.000 19.28 19.28 41.27 4.02
529 661 1.092348 CGGACAGACACTGATACCGA 58.908 55.000 20.46 0.00 42.62 4.69
530 662 1.202154 CGGACAGACACTGATACCGAC 60.202 57.143 20.46 0.00 42.62 4.79
561 694 3.436704 TGCTTATGCCAAAAGAGTCGAAG 59.563 43.478 0.00 0.00 38.71 3.79
565 698 2.413837 TGCCAAAAGAGTCGAAGCTAC 58.586 47.619 0.00 0.00 0.00 3.58
566 699 2.037251 TGCCAAAAGAGTCGAAGCTACT 59.963 45.455 0.00 0.00 0.00 2.57
567 700 2.668945 GCCAAAAGAGTCGAAGCTACTC 59.331 50.000 6.98 6.98 43.06 2.59
568 701 3.254892 CCAAAAGAGTCGAAGCTACTCC 58.745 50.000 10.83 0.00 43.64 3.85
569 702 3.254892 CAAAAGAGTCGAAGCTACTCCC 58.745 50.000 10.83 0.00 43.64 4.30
570 703 2.517998 AAGAGTCGAAGCTACTCCCT 57.482 50.000 10.83 0.00 43.64 4.20
573 706 2.093106 GAGTCGAAGCTACTCCCTCAA 58.907 52.381 4.05 0.00 37.91 3.02
574 707 2.691011 GAGTCGAAGCTACTCCCTCAAT 59.309 50.000 4.05 0.00 37.91 2.57
576 709 2.032620 TCGAAGCTACTCCCTCAATCC 58.967 52.381 0.00 0.00 0.00 3.01
577 710 1.069358 CGAAGCTACTCCCTCAATCCC 59.931 57.143 0.00 0.00 0.00 3.85
578 711 2.119495 GAAGCTACTCCCTCAATCCCA 58.881 52.381 0.00 0.00 0.00 4.37
579 712 2.503869 AGCTACTCCCTCAATCCCAT 57.496 50.000 0.00 0.00 0.00 4.00
582 715 4.507342 AGCTACTCCCTCAATCCCATAAT 58.493 43.478 0.00 0.00 0.00 1.28
583 716 5.665701 AGCTACTCCCTCAATCCCATAATA 58.334 41.667 0.00 0.00 0.00 0.98
584 717 6.275461 AGCTACTCCCTCAATCCCATAATAT 58.725 40.000 0.00 0.00 0.00 1.28
585 718 7.430844 AGCTACTCCCTCAATCCCATAATATA 58.569 38.462 0.00 0.00 0.00 0.86
586 719 7.906736 AGCTACTCCCTCAATCCCATAATATAA 59.093 37.037 0.00 0.00 0.00 0.98
587 720 8.207545 GCTACTCCCTCAATCCCATAATATAAG 58.792 40.741 0.00 0.00 0.00 1.73
588 721 9.494055 CTACTCCCTCAATCCCATAATATAAGA 57.506 37.037 0.00 0.00 0.00 2.10
589 722 8.386012 ACTCCCTCAATCCCATAATATAAGAG 57.614 38.462 0.00 0.00 0.00 2.85
590 723 7.964293 ACTCCCTCAATCCCATAATATAAGAGT 59.036 37.037 0.00 0.00 0.00 3.24
591 724 8.150827 TCCCTCAATCCCATAATATAAGAGTG 57.849 38.462 0.00 0.00 0.00 3.51
592 725 7.739444 TCCCTCAATCCCATAATATAAGAGTGT 59.261 37.037 0.00 0.00 0.00 3.55
593 726 8.043710 CCCTCAATCCCATAATATAAGAGTGTC 58.956 40.741 0.00 0.00 0.00 3.67
594 727 8.597167 CCTCAATCCCATAATATAAGAGTGTCA 58.403 37.037 0.00 0.00 0.00 3.58
600 733 9.104965 TCCCATAATATAAGAGTGTCAAAAACG 57.895 33.333 0.00 0.00 0.00 3.60
601 734 7.855904 CCCATAATATAAGAGTGTCAAAAACGC 59.144 37.037 0.00 0.00 38.74 4.84
613 746 8.773404 AGTGTCAAAAACGCTCTTATATTAGT 57.227 30.769 0.00 0.00 45.69 2.24
614 747 9.865321 AGTGTCAAAAACGCTCTTATATTAGTA 57.135 29.630 0.00 0.00 45.69 1.82
616 749 9.309516 TGTCAAAAACGCTCTTATATTAGTAGG 57.690 33.333 0.00 0.00 0.00 3.18
617 750 9.525409 GTCAAAAACGCTCTTATATTAGTAGGA 57.475 33.333 0.00 0.00 0.00 2.94
618 751 9.525409 TCAAAAACGCTCTTATATTAGTAGGAC 57.475 33.333 0.00 0.00 0.00 3.85
619 752 8.477709 CAAAAACGCTCTTATATTAGTAGGACG 58.522 37.037 0.00 0.00 0.00 4.79
620 753 5.876612 ACGCTCTTATATTAGTAGGACGG 57.123 43.478 0.00 0.00 0.00 4.79
621 754 5.555017 ACGCTCTTATATTAGTAGGACGGA 58.445 41.667 0.00 0.00 0.00 4.69
622 755 5.642919 ACGCTCTTATATTAGTAGGACGGAG 59.357 44.000 0.00 0.00 0.00 4.63
623 756 5.064962 CGCTCTTATATTAGTAGGACGGAGG 59.935 48.000 0.00 0.00 0.00 4.30
624 757 5.357596 GCTCTTATATTAGTAGGACGGAGGG 59.642 48.000 0.00 0.00 0.00 4.30
625 758 6.708885 TCTTATATTAGTAGGACGGAGGGA 57.291 41.667 0.00 0.00 0.00 4.20
626 759 7.095183 TCTTATATTAGTAGGACGGAGGGAA 57.905 40.000 0.00 0.00 0.00 3.97
627 760 7.706674 TCTTATATTAGTAGGACGGAGGGAAT 58.293 38.462 0.00 0.00 0.00 3.01
628 761 8.839745 TCTTATATTAGTAGGACGGAGGGAATA 58.160 37.037 0.00 0.00 0.00 1.75
629 762 9.471702 CTTATATTAGTAGGACGGAGGGAATAA 57.528 37.037 0.00 0.00 0.00 1.40
630 763 9.827198 TTATATTAGTAGGACGGAGGGAATAAA 57.173 33.333 0.00 0.00 0.00 1.40
631 764 8.912614 ATATTAGTAGGACGGAGGGAATAAAT 57.087 34.615 0.00 0.00 0.00 1.40
632 765 7.628501 ATTAGTAGGACGGAGGGAATAAATT 57.371 36.000 0.00 0.00 0.00 1.82
633 766 5.291905 AGTAGGACGGAGGGAATAAATTG 57.708 43.478 0.00 0.00 0.00 2.32
668 801 1.335872 ACGCATGCTGCAAAACCTAAC 60.336 47.619 17.13 0.00 45.36 2.34
713 846 6.149142 CCTTTGATTCTCTCTTCTTCCTTGTG 59.851 42.308 0.00 0.00 0.00 3.33
720 853 6.312529 TCTCTCTTCTTCCTTGTGTTAGGTA 58.687 40.000 0.00 0.00 36.63 3.08
743 876 2.616960 CAGTAAACACTAGCATCGCCA 58.383 47.619 0.00 0.00 0.00 5.69
754 887 2.229792 AGCATCGCCACTTGAAAAAGA 58.770 42.857 0.00 0.00 0.00 2.52
763 896 1.748493 ACTTGAAAAAGACCAGCGCAA 59.252 42.857 11.47 0.00 0.00 4.85
764 897 2.223572 ACTTGAAAAAGACCAGCGCAAG 60.224 45.455 11.47 1.76 37.75 4.01
765 898 0.667993 TGAAAAAGACCAGCGCAAGG 59.332 50.000 11.47 14.38 38.28 3.61
766 899 0.664466 GAAAAAGACCAGCGCAAGGC 60.664 55.000 17.61 6.62 44.05 4.35
1103 1238 1.973812 GGAGGAACAGGCACCAAGC 60.974 63.158 0.00 0.00 44.65 4.01
1113 1248 3.292159 CACCAAGCAGCAGCAGCA 61.292 61.111 12.92 0.00 45.49 4.41
1114 1249 2.984155 ACCAAGCAGCAGCAGCAG 60.984 61.111 12.92 3.98 45.49 4.24
1211 1349 1.000163 GATCACGCTGTCCCATATCGT 60.000 52.381 0.00 0.00 0.00 3.73
1356 1497 1.490490 GTATCATCCAACTGGCCTCCA 59.510 52.381 3.32 0.00 34.44 3.86
1366 1507 1.242076 CTGGCCTCCAGTTCTTGTTG 58.758 55.000 3.32 0.00 45.82 3.33
1387 1528 1.882623 CTTGGTGGTTCTTCAGCTTCC 59.117 52.381 0.00 0.00 36.25 3.46
1481 1622 0.979665 TCTCTTCCCTTCTGCACTGG 59.020 55.000 0.00 0.00 0.00 4.00
1482 1623 0.689623 CTCTTCCCTTCTGCACTGGT 59.310 55.000 0.00 0.00 0.00 4.00
1497 1638 1.279271 ACTGGTATCTGCCTGGTTGTC 59.721 52.381 0.00 0.00 32.57 3.18
1553 1694 1.830587 CTGGACCAGCCACTACTGCA 61.831 60.000 8.99 0.00 43.33 4.41
1554 1695 1.200760 TGGACCAGCCACTACTGCAT 61.201 55.000 0.00 0.00 43.33 3.96
1641 1782 2.669569 CGGTGGCTGAACCCAGTG 60.670 66.667 0.00 0.00 42.35 3.66
1668 1809 2.360475 GGGCACAAGGTGAGGCTC 60.360 66.667 7.79 7.79 35.23 4.70
1854 1995 6.201806 CAGGTTAGTGAACAGTTCTTCTTCTG 59.798 42.308 14.51 14.20 37.29 3.02
1886 2027 8.958060 ATAATAGAGCTAGTATTTGTCCTGGA 57.042 34.615 6.21 0.00 0.00 3.86
1953 2094 5.523916 CACTGTTTCTTCTTATATGGGACCG 59.476 44.000 0.00 0.00 0.00 4.79
1995 2136 4.021894 GTGGAGCTACTCTCTGACAAGAAA 60.022 45.833 0.00 0.00 41.60 2.52
2289 2430 2.348779 GCAAATTTTCTTGGCACTTGCG 60.349 45.455 0.00 0.00 43.26 4.85
2300 2441 0.391130 GCACTTGCGATCCTGTACCA 60.391 55.000 0.00 0.00 0.00 3.25
2301 2442 1.743772 GCACTTGCGATCCTGTACCAT 60.744 52.381 0.00 0.00 0.00 3.55
2307 2448 2.885266 TGCGATCCTGTACCATAGTCTC 59.115 50.000 0.00 0.00 0.00 3.36
2347 2488 0.319555 TGCAGTCCTCGTAACAGTGC 60.320 55.000 0.00 0.00 37.06 4.40
2558 2699 4.402793 GTGGCTCAGGAAGTATCTCTACAA 59.597 45.833 0.00 0.00 0.00 2.41
2809 2950 0.251341 CCAGGGTAAGCCAAGTTGCT 60.251 55.000 0.00 0.00 45.43 3.91
2973 3114 1.668419 GTCTCAAGGTTGCAGTGTGT 58.332 50.000 0.00 0.00 0.00 3.72
3180 3321 1.971695 GGTGCTACAAGGGTGTGCC 60.972 63.158 0.00 0.00 38.82 5.01
3426 3568 2.030213 GCAACAGATGAGCTTAGCTTCG 59.970 50.000 8.58 2.64 39.88 3.79
3546 3691 2.770699 GCCATTGCTGCAATCTACTC 57.229 50.000 24.04 8.57 31.05 2.59
3547 3692 1.336125 GCCATTGCTGCAATCTACTCC 59.664 52.381 24.04 6.34 31.05 3.85
3548 3693 1.952296 CCATTGCTGCAATCTACTCCC 59.048 52.381 24.04 0.00 31.05 4.30
3549 3694 2.422519 CCATTGCTGCAATCTACTCCCT 60.423 50.000 24.04 0.00 31.05 4.20
3550 3695 2.698855 TTGCTGCAATCTACTCCCTC 57.301 50.000 11.69 0.00 0.00 4.30
3551 3696 0.833287 TGCTGCAATCTACTCCCTCC 59.167 55.000 0.00 0.00 0.00 4.30
3552 3697 0.249657 GCTGCAATCTACTCCCTCCG 60.250 60.000 0.00 0.00 0.00 4.63
3553 3698 1.115467 CTGCAATCTACTCCCTCCGT 58.885 55.000 0.00 0.00 0.00 4.69
3554 3699 1.482593 CTGCAATCTACTCCCTCCGTT 59.517 52.381 0.00 0.00 0.00 4.44
3555 3700 1.480954 TGCAATCTACTCCCTCCGTTC 59.519 52.381 0.00 0.00 0.00 3.95
3556 3701 1.202545 GCAATCTACTCCCTCCGTTCC 60.203 57.143 0.00 0.00 0.00 3.62
3557 3702 2.108168 CAATCTACTCCCTCCGTTCCA 58.892 52.381 0.00 0.00 0.00 3.53
3558 3703 2.500098 CAATCTACTCCCTCCGTTCCAA 59.500 50.000 0.00 0.00 0.00 3.53
3559 3704 2.314071 TCTACTCCCTCCGTTCCAAA 57.686 50.000 0.00 0.00 0.00 3.28
3560 3705 2.829023 TCTACTCCCTCCGTTCCAAAT 58.171 47.619 0.00 0.00 0.00 2.32
3561 3706 3.178865 TCTACTCCCTCCGTTCCAAATT 58.821 45.455 0.00 0.00 0.00 1.82
3562 3707 4.355549 TCTACTCCCTCCGTTCCAAATTA 58.644 43.478 0.00 0.00 0.00 1.40
3563 3708 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
3564 3709 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
3565 3710 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
3566 3711 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
3567 3712 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
3568 3713 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
3569 3714 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
3570 3715 1.060122 CCGTTCCAAATTACTCGTCGC 59.940 52.381 0.00 0.00 0.00 5.19
3571 3716 1.266211 CGTTCCAAATTACTCGTCGCG 60.266 52.381 0.00 0.00 0.00 5.87
3572 3717 1.987770 GTTCCAAATTACTCGTCGCGA 59.012 47.619 3.71 3.71 0.00 5.87
3573 3718 1.621107 TCCAAATTACTCGTCGCGAC 58.379 50.000 28.96 28.96 0.00 5.19
3574 3719 1.068402 TCCAAATTACTCGTCGCGACA 60.068 47.619 35.71 22.35 0.00 4.35
3575 3720 1.722464 CCAAATTACTCGTCGCGACAA 59.278 47.619 35.71 23.64 0.00 3.18
3576 3721 2.222508 CCAAATTACTCGTCGCGACAAG 60.223 50.000 35.71 30.58 0.00 3.16
3577 3722 2.342910 AATTACTCGTCGCGACAAGT 57.657 45.000 32.79 32.79 0.00 3.16
3578 3723 3.476295 AATTACTCGTCGCGACAAGTA 57.524 42.857 30.69 30.69 0.00 2.24
3579 3724 2.967459 TTACTCGTCGCGACAAGTAA 57.033 45.000 36.41 36.41 0.00 2.24
3580 3725 3.476295 TTACTCGTCGCGACAAGTAAT 57.524 42.857 36.41 18.65 0.00 1.89
3581 3726 2.342910 ACTCGTCGCGACAAGTAATT 57.657 45.000 35.71 11.09 0.00 1.40
3582 3727 2.669364 ACTCGTCGCGACAAGTAATTT 58.331 42.857 35.71 10.70 0.00 1.82
3583 3728 2.407361 ACTCGTCGCGACAAGTAATTTG 59.593 45.455 35.71 17.85 42.68 2.32
3584 3729 1.722464 TCGTCGCGACAAGTAATTTGG 59.278 47.619 35.71 17.15 41.25 3.28
3585 3730 1.722464 CGTCGCGACAAGTAATTTGGA 59.278 47.619 35.71 0.00 41.25 3.53
3586 3731 2.156117 CGTCGCGACAAGTAATTTGGAA 59.844 45.455 35.71 0.00 41.25 3.53
3587 3732 3.476181 GTCGCGACAAGTAATTTGGAAC 58.524 45.455 33.09 0.55 41.25 3.62
3588 3733 2.156117 TCGCGACAAGTAATTTGGAACG 59.844 45.455 3.71 0.00 41.25 3.95
3589 3734 2.723618 CGCGACAAGTAATTTGGAACGG 60.724 50.000 0.00 0.00 41.25 4.44
3590 3735 2.481185 GCGACAAGTAATTTGGAACGGA 59.519 45.455 0.00 0.00 41.25 4.69
3591 3736 3.424433 GCGACAAGTAATTTGGAACGGAG 60.424 47.826 0.00 0.00 41.25 4.63
3592 3737 3.124636 CGACAAGTAATTTGGAACGGAGG 59.875 47.826 0.00 0.00 41.25 4.30
3593 3738 3.418047 ACAAGTAATTTGGAACGGAGGG 58.582 45.455 0.00 0.00 41.25 4.30
3597 3742 4.098894 AGTAATTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
3803 3948 1.524165 TCAACCCCGTTTCCACACG 60.524 57.895 0.00 0.00 40.02 4.49
3816 3961 5.673717 CGTTTCCACACGTAACTAGTTTTTG 59.326 40.000 14.49 10.79 35.34 2.44
3855 4000 8.685838 AAATTTGTGCAGTTTAGACTAGGTTA 57.314 30.769 0.00 0.00 33.90 2.85
3989 4141 5.046288 AGGTCATGAAAGATGGAAGGATC 57.954 43.478 0.00 0.00 0.00 3.36
4003 4155 1.479709 AGGATCGTTCAGTCTGGGAG 58.520 55.000 0.00 0.00 0.00 4.30
4025 4177 7.255695 GGGAGATATGATGATCTGATAGCTGAG 60.256 44.444 0.00 0.00 36.27 3.35
4076 4228 3.216800 TGCACATGATCAATCCCTTAGC 58.783 45.455 0.00 0.00 0.00 3.09
4157 4309 6.556495 AGATAGAGGCCACAGAAATAGAATCA 59.444 38.462 5.01 0.00 0.00 2.57
4287 4439 3.420893 CCTGTGGTTCTTCTATGCCAAA 58.579 45.455 0.00 0.00 32.26 3.28
4349 4501 0.540454 CATGGGCAGCAGAGAGAGAA 59.460 55.000 0.00 0.00 0.00 2.87
4391 4543 8.162878 AGAAGATGATTGGTATATTTGTGCTG 57.837 34.615 0.00 0.00 0.00 4.41
4486 4638 3.988976 ACAGCTCTTCTTAGGCATGAA 57.011 42.857 0.00 0.00 0.00 2.57
4567 4719 1.818674 CAATAGGGTGAGCCAACAACC 59.181 52.381 2.50 0.00 46.91 3.77
4707 4864 0.038251 TAGCAGGGCTGATATTCGCG 60.038 55.000 0.00 0.00 40.10 5.87
4768 4925 6.518493 CAAATTGCTTGGCCTATATTCATGT 58.482 36.000 3.32 0.00 0.00 3.21
4853 5010 7.168905 CCTACTTCCCTAAGTTCTCAAAATGT 58.831 38.462 0.00 0.00 43.60 2.71
5163 5320 3.521126 AGTCATACTTGTCTCCTTGCCAT 59.479 43.478 0.00 0.00 0.00 4.40
5174 5331 3.152341 CTCCTTGCCATGGGATACAATC 58.848 50.000 15.13 0.00 39.74 2.67
5237 5394 5.479124 ACACGAACTGTATTTTCTAGGGT 57.521 39.130 0.00 0.00 0.00 4.34
5400 5559 7.563188 TGTTACAAGCATGGGTTATATGGAATT 59.437 33.333 0.00 0.00 0.00 2.17
5491 5650 7.821359 TGAATCTCCTTTAGTGATTGAGAACTG 59.179 37.037 0.00 0.00 38.49 3.16
5504 5663 3.583228 TGAGAACTGTAGACCAAGGGAA 58.417 45.455 0.00 0.00 0.00 3.97
5515 5674 0.826062 CCAAGGGAAACATGGCCATC 59.174 55.000 17.61 5.18 32.93 3.51
5525 5684 3.329542 ATGGCCATCGTGCGGAACT 62.330 57.895 14.09 0.00 0.00 3.01
5666 5825 2.080654 AGTCTACTCTCATCCAGGCC 57.919 55.000 0.00 0.00 0.00 5.19
5726 5885 7.803487 ATTCATAGATGGAGTGGACATATCA 57.197 36.000 0.00 0.00 0.00 2.15
5858 6017 6.069088 TGGACACTGAAATATGGGAGGTAAAT 60.069 38.462 0.00 0.00 0.00 1.40
5881 6040 2.292828 ATACAGTGCCAGCAAAAGGT 57.707 45.000 0.00 0.00 0.00 3.50
5913 6079 7.761249 AGTGTCCATAAATATTCTTTGCAAAGC 59.239 33.333 30.35 14.22 35.99 3.51
6069 6250 6.582636 TGTTAGATGCACCAGGTAAGATTAG 58.417 40.000 0.00 0.00 0.00 1.73
6070 6251 4.078639 AGATGCACCAGGTAAGATTAGC 57.921 45.455 0.00 0.00 0.00 3.09
6077 6258 6.326583 TGCACCAGGTAAGATTAGCTAGTTAT 59.673 38.462 4.12 0.00 39.29 1.89
6119 6300 5.502089 AATTCATTTTTCAAGATGGCCCA 57.498 34.783 0.00 0.00 0.00 5.36
6226 6408 6.295236 CCAGGGTATTGCTGATGAAAAAGAAA 60.295 38.462 0.00 0.00 0.00 2.52
6313 6495 4.694037 ACTATAAGGCAAGAAACGGACAAC 59.306 41.667 0.00 0.00 0.00 3.32
6319 6501 0.655733 AAGAAACGGACAACTGCACG 59.344 50.000 0.00 0.00 0.00 5.34
6337 6519 4.082517 TGCACGGTTATTACAATTGCACAT 60.083 37.500 5.05 0.00 32.90 3.21
6400 6582 5.537674 ACTCGGAGAAGGTAAAGAACACTAA 59.462 40.000 12.86 0.00 34.09 2.24
6408 6590 6.862711 AGGTAAAGAACACTAAAAGCACTC 57.137 37.500 0.00 0.00 0.00 3.51
6409 6591 6.354130 AGGTAAAGAACACTAAAAGCACTCA 58.646 36.000 0.00 0.00 0.00 3.41
6410 6592 6.826741 AGGTAAAGAACACTAAAAGCACTCAA 59.173 34.615 0.00 0.00 0.00 3.02
6413 6595 5.757850 AGAACACTAAAAGCACTCAAAGG 57.242 39.130 0.00 0.00 0.00 3.11
6419 6603 8.232913 ACACTAAAAGCACTCAAAGGATTTTA 57.767 30.769 0.00 0.00 35.03 1.52
6420 6604 8.352942 ACACTAAAAGCACTCAAAGGATTTTAG 58.647 33.333 16.14 16.14 42.08 1.85
6424 6608 8.648557 AAAAGCACTCAAAGGATTTTAGTTTC 57.351 30.769 0.00 0.00 39.32 2.78
6427 6611 5.920840 GCACTCAAAGGATTTTAGTTTCCAC 59.079 40.000 0.00 0.00 39.32 4.02
6443 6627 7.169158 AGTTTCCACATATAATTGGGTGTTG 57.831 36.000 3.71 0.00 33.25 3.33
6444 6628 6.951198 AGTTTCCACATATAATTGGGTGTTGA 59.049 34.615 3.71 0.00 33.25 3.18
6445 6629 7.122650 AGTTTCCACATATAATTGGGTGTTGAG 59.877 37.037 3.71 0.00 33.25 3.02
6446 6630 4.887071 TCCACATATAATTGGGTGTTGAGC 59.113 41.667 3.71 0.00 33.25 4.26
6447 6631 4.889409 CCACATATAATTGGGTGTTGAGCT 59.111 41.667 0.00 0.00 0.00 4.09
6462 6648 1.677576 TGAGCTTGCACTTCCAACAAG 59.322 47.619 0.00 0.00 42.90 3.16
6512 6698 5.323371 TCTTACCAATTTGTATTGCAGGC 57.677 39.130 0.00 0.00 39.87 4.85
6549 6735 6.737254 TTGATTCACCGGAAAATCTACTTC 57.263 37.500 24.06 8.16 36.43 3.01
6591 6777 3.760151 CTCAAAGCTGGTGATGGAATTCA 59.240 43.478 7.93 0.00 0.00 2.57
6671 6857 3.775316 CCAACCTACCTGACCTCACTTAT 59.225 47.826 0.00 0.00 0.00 1.73
6718 6904 4.620803 CGGAGTACAAGGAAATACAGCACT 60.621 45.833 0.00 0.00 0.00 4.40
6719 6905 5.246307 GGAGTACAAGGAAATACAGCACTT 58.754 41.667 0.00 0.00 0.00 3.16
6781 6967 1.598130 GACCAGCGGCATATGGACC 60.598 63.158 13.08 0.00 39.02 4.46
7005 7192 7.285629 TGGTACATTTCGAGAGAGACATTCTAT 59.714 37.037 0.00 0.00 43.69 1.98
7007 7194 6.511416 ACATTTCGAGAGAGACATTCTATGG 58.489 40.000 0.00 0.00 43.69 2.74
7022 7209 7.175104 ACATTCTATGGTTAGCTTTTTCAGGA 58.825 34.615 0.00 0.00 33.60 3.86
7063 7251 2.512896 GCCCTGCCCCATCTACTG 59.487 66.667 0.00 0.00 0.00 2.74
7145 7342 1.787989 GCATGCAATCGACAGAACGTG 60.788 52.381 14.21 0.00 34.70 4.49
7221 7418 4.470170 CGATGCGGACACGGACGA 62.470 66.667 0.00 0.00 45.20 4.20
7224 7421 3.626680 ATGCGGACACGGACGAGTG 62.627 63.158 0.00 8.40 45.20 3.51
7520 7722 3.424962 CGCATTTCGTTTCTTTCTCTCCC 60.425 47.826 0.00 0.00 0.00 4.30
7544 7746 0.741915 GGAAACGGGCAACACAAAGA 59.258 50.000 0.00 0.00 39.74 2.52
7551 7753 2.082366 GCAACACAAAGATGCGGCG 61.082 57.895 0.51 0.51 36.26 6.46
7552 7754 1.442520 CAACACAAAGATGCGGCGG 60.443 57.895 9.78 0.00 0.00 6.13
7553 7755 2.625823 AACACAAAGATGCGGCGGG 61.626 57.895 9.78 0.00 0.00 6.13
7554 7756 3.814268 CACAAAGATGCGGCGGGG 61.814 66.667 9.78 0.00 0.00 5.73
7555 7757 4.344865 ACAAAGATGCGGCGGGGT 62.345 61.111 9.78 0.00 0.00 4.95
7556 7758 3.508840 CAAAGATGCGGCGGGGTC 61.509 66.667 9.78 0.00 0.00 4.46
7557 7759 4.796495 AAAGATGCGGCGGGGTCC 62.796 66.667 9.78 0.00 0.00 4.46
7568 7770 2.497770 GGGGTCCACCACGTATCG 59.502 66.667 0.00 0.00 42.91 2.92
7569 7771 2.053865 GGGGTCCACCACGTATCGA 61.054 63.158 0.00 0.00 42.91 3.59
7570 7772 1.140375 GGGTCCACCACGTATCGAC 59.860 63.158 0.00 0.00 39.85 4.20
7580 7782 3.451504 CGTATCGACGTCCTAAGGC 57.548 57.895 10.58 0.00 44.31 4.35
7581 7783 0.383983 CGTATCGACGTCCTAAGGCG 60.384 60.000 10.58 3.88 44.31 5.52
7582 7784 0.940126 GTATCGACGTCCTAAGGCGA 59.060 55.000 10.58 2.48 35.32 5.54
7583 7785 1.534595 GTATCGACGTCCTAAGGCGAT 59.465 52.381 10.58 11.72 43.24 4.58
7584 7786 1.888215 ATCGACGTCCTAAGGCGATA 58.112 50.000 10.58 0.00 39.60 2.92
7585 7787 1.224075 TCGACGTCCTAAGGCGATAG 58.776 55.000 10.58 0.00 0.00 2.08
7614 7816 4.760047 CGCGGCTGTGCTAGGGTT 62.760 66.667 0.00 0.00 0.00 4.11
7615 7817 2.582436 GCGGCTGTGCTAGGGTTA 59.418 61.111 0.00 0.00 0.00 2.85
7616 7818 1.521681 GCGGCTGTGCTAGGGTTAG 60.522 63.158 0.00 0.00 0.00 2.34
7617 7819 1.144057 CGGCTGTGCTAGGGTTAGG 59.856 63.158 0.00 0.00 0.00 2.69
7618 7820 1.527370 GGCTGTGCTAGGGTTAGGG 59.473 63.158 0.00 0.00 0.00 3.53
7619 7821 1.272554 GGCTGTGCTAGGGTTAGGGT 61.273 60.000 0.00 0.00 0.00 4.34
7620 7822 0.618981 GCTGTGCTAGGGTTAGGGTT 59.381 55.000 0.00 0.00 0.00 4.11
7621 7823 1.004394 GCTGTGCTAGGGTTAGGGTTT 59.996 52.381 0.00 0.00 0.00 3.27
7622 7824 2.940083 GCTGTGCTAGGGTTAGGGTTTC 60.940 54.545 0.00 0.00 0.00 2.78
7623 7825 1.276989 TGTGCTAGGGTTAGGGTTTCG 59.723 52.381 0.00 0.00 0.00 3.46
7624 7826 1.551883 GTGCTAGGGTTAGGGTTTCGA 59.448 52.381 0.00 0.00 0.00 3.71
7625 7827 1.829222 TGCTAGGGTTAGGGTTTCGAG 59.171 52.381 0.00 0.00 0.00 4.04
7626 7828 1.472904 GCTAGGGTTAGGGTTTCGAGC 60.473 57.143 0.00 0.00 0.00 5.03
7627 7829 1.829222 CTAGGGTTAGGGTTTCGAGCA 59.171 52.381 0.00 0.00 0.00 4.26
7628 7830 0.323957 AGGGTTAGGGTTTCGAGCAC 59.676 55.000 0.00 0.00 0.00 4.40
7629 7831 1.017701 GGGTTAGGGTTTCGAGCACG 61.018 60.000 0.00 0.00 41.26 5.34
7630 7832 1.017701 GGTTAGGGTTTCGAGCACGG 61.018 60.000 3.11 0.00 40.21 4.94
7631 7833 1.017701 GTTAGGGTTTCGAGCACGGG 61.018 60.000 3.11 0.00 40.21 5.28
7632 7834 2.175035 TTAGGGTTTCGAGCACGGGG 62.175 60.000 3.11 0.00 40.21 5.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 3.649986 GATCAAATCCGGGCGCGG 61.650 66.667 34.33 34.33 0.00 6.46
13 14 7.177878 AGAGAGATAGAGAGGAGGATCAAATC 58.822 42.308 0.00 0.00 36.25 2.17
14 15 7.107435 AGAGAGATAGAGAGGAGGATCAAAT 57.893 40.000 0.00 0.00 36.25 2.32
15 16 6.467194 GGAGAGAGATAGAGAGGAGGATCAAA 60.467 46.154 0.00 0.00 36.25 2.69
16 17 5.014123 GGAGAGAGATAGAGAGGAGGATCAA 59.986 48.000 0.00 0.00 36.25 2.57
17 18 4.536090 GGAGAGAGATAGAGAGGAGGATCA 59.464 50.000 0.00 0.00 36.25 2.92
18 19 4.383118 CGGAGAGAGATAGAGAGGAGGATC 60.383 54.167 0.00 0.00 0.00 3.36
19 20 3.519510 CGGAGAGAGATAGAGAGGAGGAT 59.480 52.174 0.00 0.00 0.00 3.24
20 21 2.903784 CGGAGAGAGATAGAGAGGAGGA 59.096 54.545 0.00 0.00 0.00 3.71
21 22 2.637872 ACGGAGAGAGATAGAGAGGAGG 59.362 54.545 0.00 0.00 0.00 4.30
22 23 3.557054 CCACGGAGAGAGATAGAGAGGAG 60.557 56.522 0.00 0.00 0.00 3.69
23 24 2.370519 CCACGGAGAGAGATAGAGAGGA 59.629 54.545 0.00 0.00 0.00 3.71
24 25 2.552155 CCCACGGAGAGAGATAGAGAGG 60.552 59.091 0.00 0.00 0.00 3.69
31 32 1.207791 AATTGCCCACGGAGAGAGAT 58.792 50.000 0.00 0.00 0.00 2.75
107 142 7.351223 CGAAGAAGATGAAGAAGCAAATATCC 58.649 38.462 0.00 0.00 0.00 2.59
195 260 3.099905 TCCTGTACTCCTTCACTCCATG 58.900 50.000 0.00 0.00 0.00 3.66
197 262 2.110188 ACTCCTGTACTCCTTCACTCCA 59.890 50.000 0.00 0.00 0.00 3.86
198 263 2.810164 ACTCCTGTACTCCTTCACTCC 58.190 52.381 0.00 0.00 0.00 3.85
199 264 5.622687 GCTTAACTCCTGTACTCCTTCACTC 60.623 48.000 0.00 0.00 0.00 3.51
200 265 4.221041 GCTTAACTCCTGTACTCCTTCACT 59.779 45.833 0.00 0.00 0.00 3.41
201 266 4.221041 AGCTTAACTCCTGTACTCCTTCAC 59.779 45.833 0.00 0.00 0.00 3.18
202 267 4.417437 AGCTTAACTCCTGTACTCCTTCA 58.583 43.478 0.00 0.00 0.00 3.02
205 270 5.827326 AAAAGCTTAACTCCTGTACTCCT 57.173 39.130 0.00 0.00 0.00 3.69
215 280 3.492011 TCGGTGTCGAAAAAGCTTAACTC 59.508 43.478 0.00 0.00 43.03 3.01
220 285 1.226746 CCTCGGTGTCGAAAAAGCTT 58.773 50.000 0.00 0.00 45.47 3.74
234 299 1.136305 TGGAAATAAGTCGAGCCTCGG 59.864 52.381 15.08 0.00 40.88 4.63
250 315 7.856145 ATAAACAAACACAAAAGCATTGGAA 57.144 28.000 7.12 0.00 0.00 3.53
345 469 5.013568 ACGTACCGGATATTGTGATTTCA 57.986 39.130 9.46 0.00 0.00 2.69
450 577 1.216977 CGGCGTGGATGGAGTACAA 59.783 57.895 0.00 0.00 0.00 2.41
516 648 3.429135 GGAGAAAGGTCGGTATCAGTGTC 60.429 52.174 0.00 0.00 0.00 3.67
517 649 2.496470 GGAGAAAGGTCGGTATCAGTGT 59.504 50.000 0.00 0.00 0.00 3.55
518 650 2.761208 AGGAGAAAGGTCGGTATCAGTG 59.239 50.000 0.00 0.00 0.00 3.66
520 652 2.482142 GCAGGAGAAAGGTCGGTATCAG 60.482 54.545 0.00 0.00 0.00 2.90
521 653 1.480954 GCAGGAGAAAGGTCGGTATCA 59.519 52.381 0.00 0.00 0.00 2.15
522 654 1.757699 AGCAGGAGAAAGGTCGGTATC 59.242 52.381 0.00 0.00 0.00 2.24
523 655 1.867363 AGCAGGAGAAAGGTCGGTAT 58.133 50.000 0.00 0.00 0.00 2.73
524 656 1.640917 AAGCAGGAGAAAGGTCGGTA 58.359 50.000 0.00 0.00 0.00 4.02
528 660 2.293170 GGCATAAGCAGGAGAAAGGTC 58.707 52.381 0.00 0.00 44.61 3.85
529 661 1.635487 TGGCATAAGCAGGAGAAAGGT 59.365 47.619 0.00 0.00 44.61 3.50
530 662 2.425143 TGGCATAAGCAGGAGAAAGG 57.575 50.000 0.00 0.00 44.61 3.11
561 694 4.917906 ATTATGGGATTGAGGGAGTAGC 57.082 45.455 0.00 0.00 0.00 3.58
565 698 8.263640 CACTCTTATATTATGGGATTGAGGGAG 58.736 40.741 0.00 0.00 0.00 4.30
566 699 7.739444 ACACTCTTATATTATGGGATTGAGGGA 59.261 37.037 0.00 0.00 0.00 4.20
567 700 7.922382 ACACTCTTATATTATGGGATTGAGGG 58.078 38.462 0.00 0.00 0.00 4.30
568 701 8.597167 TGACACTCTTATATTATGGGATTGAGG 58.403 37.037 0.00 0.00 0.00 3.86
574 707 9.104965 CGTTTTTGACACTCTTATATTATGGGA 57.895 33.333 0.00 0.00 0.00 4.37
576 709 8.612619 AGCGTTTTTGACACTCTTATATTATGG 58.387 33.333 0.00 0.00 0.00 2.74
577 710 9.638300 GAGCGTTTTTGACACTCTTATATTATG 57.362 33.333 0.00 0.00 35.13 1.90
578 711 9.601217 AGAGCGTTTTTGACACTCTTATATTAT 57.399 29.630 0.00 0.00 43.48 1.28
579 712 8.997621 AGAGCGTTTTTGACACTCTTATATTA 57.002 30.769 0.00 0.00 43.48 0.98
586 719 7.907214 AATATAAGAGCGTTTTTGACACTCT 57.093 32.000 0.00 0.00 46.92 3.24
587 720 8.870879 ACTAATATAAGAGCGTTTTTGACACTC 58.129 33.333 0.00 0.00 37.64 3.51
588 721 8.773404 ACTAATATAAGAGCGTTTTTGACACT 57.227 30.769 0.00 0.00 0.00 3.55
590 723 9.309516 CCTACTAATATAAGAGCGTTTTTGACA 57.690 33.333 0.00 0.00 0.00 3.58
591 724 9.525409 TCCTACTAATATAAGAGCGTTTTTGAC 57.475 33.333 0.00 0.00 0.00 3.18
592 725 9.525409 GTCCTACTAATATAAGAGCGTTTTTGA 57.475 33.333 0.00 0.00 0.00 2.69
593 726 8.477709 CGTCCTACTAATATAAGAGCGTTTTTG 58.522 37.037 0.00 0.00 0.00 2.44
594 727 7.650903 CCGTCCTACTAATATAAGAGCGTTTTT 59.349 37.037 0.00 0.00 0.00 1.94
595 728 7.013655 TCCGTCCTACTAATATAAGAGCGTTTT 59.986 37.037 0.00 0.00 0.00 2.43
596 729 6.488006 TCCGTCCTACTAATATAAGAGCGTTT 59.512 38.462 0.00 0.00 0.00 3.60
597 730 6.000219 TCCGTCCTACTAATATAAGAGCGTT 59.000 40.000 0.00 0.00 0.00 4.84
598 731 5.555017 TCCGTCCTACTAATATAAGAGCGT 58.445 41.667 0.00 0.00 0.00 5.07
599 732 5.064962 CCTCCGTCCTACTAATATAAGAGCG 59.935 48.000 0.00 0.00 0.00 5.03
600 733 5.357596 CCCTCCGTCCTACTAATATAAGAGC 59.642 48.000 0.00 0.00 0.00 4.09
601 734 6.719301 TCCCTCCGTCCTACTAATATAAGAG 58.281 44.000 0.00 0.00 0.00 2.85
602 735 6.708885 TCCCTCCGTCCTACTAATATAAGA 57.291 41.667 0.00 0.00 0.00 2.10
603 736 7.957992 ATTCCCTCCGTCCTACTAATATAAG 57.042 40.000 0.00 0.00 0.00 1.73
604 737 9.827198 TTTATTCCCTCCGTCCTACTAATATAA 57.173 33.333 0.00 0.00 0.00 0.98
606 739 8.912614 ATTTATTCCCTCCGTCCTACTAATAT 57.087 34.615 0.00 0.00 0.00 1.28
607 740 8.591072 CAATTTATTCCCTCCGTCCTACTAATA 58.409 37.037 0.00 0.00 0.00 0.98
608 741 7.450903 CAATTTATTCCCTCCGTCCTACTAAT 58.549 38.462 0.00 0.00 0.00 1.73
609 742 6.687139 GCAATTTATTCCCTCCGTCCTACTAA 60.687 42.308 0.00 0.00 0.00 2.24
610 743 5.221581 GCAATTTATTCCCTCCGTCCTACTA 60.222 44.000 0.00 0.00 0.00 1.82
611 744 4.444449 GCAATTTATTCCCTCCGTCCTACT 60.444 45.833 0.00 0.00 0.00 2.57
612 745 3.813724 GCAATTTATTCCCTCCGTCCTAC 59.186 47.826 0.00 0.00 0.00 3.18
613 746 3.181448 GGCAATTTATTCCCTCCGTCCTA 60.181 47.826 0.00 0.00 0.00 2.94
614 747 2.422945 GGCAATTTATTCCCTCCGTCCT 60.423 50.000 0.00 0.00 0.00 3.85
615 748 1.954382 GGCAATTTATTCCCTCCGTCC 59.046 52.381 0.00 0.00 0.00 4.79
616 749 1.954382 GGGCAATTTATTCCCTCCGTC 59.046 52.381 0.00 0.00 37.08 4.79
617 750 1.286553 TGGGCAATTTATTCCCTCCGT 59.713 47.619 0.00 0.00 40.69 4.69
618 751 2.065899 TGGGCAATTTATTCCCTCCG 57.934 50.000 0.00 0.00 40.69 4.63
619 752 3.966665 TGATTGGGCAATTTATTCCCTCC 59.033 43.478 0.00 0.00 40.69 4.30
620 753 5.363580 TCTTGATTGGGCAATTTATTCCCTC 59.636 40.000 0.00 0.00 40.69 4.30
621 754 5.279685 TCTTGATTGGGCAATTTATTCCCT 58.720 37.500 0.00 0.00 40.69 4.20
622 755 5.612725 TCTTGATTGGGCAATTTATTCCC 57.387 39.130 0.00 0.00 40.47 3.97
623 756 5.467735 GCATCTTGATTGGGCAATTTATTCC 59.532 40.000 0.00 0.00 0.00 3.01
624 757 6.018507 GTGCATCTTGATTGGGCAATTTATTC 60.019 38.462 0.00 0.00 36.08 1.75
625 758 5.818857 GTGCATCTTGATTGGGCAATTTATT 59.181 36.000 0.00 0.00 36.08 1.40
626 759 5.362263 GTGCATCTTGATTGGGCAATTTAT 58.638 37.500 0.00 0.00 36.08 1.40
627 760 4.677514 CGTGCATCTTGATTGGGCAATTTA 60.678 41.667 0.00 0.00 36.08 1.40
628 761 3.602483 GTGCATCTTGATTGGGCAATTT 58.398 40.909 0.00 0.00 36.08 1.82
629 762 2.417651 CGTGCATCTTGATTGGGCAATT 60.418 45.455 0.00 0.00 36.08 2.32
630 763 1.135527 CGTGCATCTTGATTGGGCAAT 59.864 47.619 0.00 0.00 36.08 3.56
631 764 0.527113 CGTGCATCTTGATTGGGCAA 59.473 50.000 0.00 0.00 36.08 4.52
632 765 1.936436 GCGTGCATCTTGATTGGGCA 61.936 55.000 0.00 0.00 0.00 5.36
633 766 1.226773 GCGTGCATCTTGATTGGGC 60.227 57.895 0.00 0.00 0.00 5.36
668 801 7.879677 TCAAAGGGCACATATATTGAGATAGTG 59.120 37.037 0.00 0.00 0.00 2.74
684 817 3.949132 AGAAGAGAGAATCAAAGGGCAC 58.051 45.455 0.00 0.00 37.82 5.01
713 846 5.107824 GCTAGTGTTTACTGCCTACCTAAC 58.892 45.833 0.00 0.00 37.78 2.34
720 853 2.893637 CGATGCTAGTGTTTACTGCCT 58.106 47.619 0.00 0.00 37.78 4.75
743 876 1.388547 TGCGCTGGTCTTTTTCAAGT 58.611 45.000 9.73 0.00 0.00 3.16
873 1006 3.747099 AAATAAGCTAAGCAGTGCGTG 57.253 42.857 14.19 7.21 0.00 5.34
1211 1349 0.395312 GACCCCAAGAACCGAGAACA 59.605 55.000 0.00 0.00 0.00 3.18
1356 1497 2.143876 ACCACCAAGCAACAAGAACT 57.856 45.000 0.00 0.00 0.00 3.01
1366 1507 1.268079 GAAGCTGAAGAACCACCAAGC 59.732 52.381 0.00 0.00 0.00 4.01
1481 1622 2.810650 CTACGACAACCAGGCAGATAC 58.189 52.381 0.00 0.00 0.00 2.24
1482 1623 1.136305 GCTACGACAACCAGGCAGATA 59.864 52.381 0.00 0.00 0.00 1.98
1497 1638 2.890808 TGGAAAGCCTCATAGCTACG 57.109 50.000 0.00 0.00 44.11 3.51
1614 1755 2.045926 AGCCACCGGAATGTGAGC 60.046 61.111 9.46 1.63 38.55 4.26
1641 1782 0.955919 CCTTGTGCCCCTTCTCGAAC 60.956 60.000 0.00 0.00 0.00 3.95
1858 1999 9.429359 CAGGACAAATACTAGCTCTATTATTGG 57.571 37.037 0.00 1.86 0.00 3.16
1995 2136 1.607467 GCCATGGCCCTTGTCAGTT 60.607 57.895 27.24 0.00 34.56 3.16
2300 2441 0.179045 GGCCATTGCACCGAGACTAT 60.179 55.000 0.00 0.00 40.13 2.12
2301 2442 1.220749 GGCCATTGCACCGAGACTA 59.779 57.895 0.00 0.00 40.13 2.59
2347 2488 0.877071 GTGTTGCTCACCATCACCAG 59.123 55.000 2.08 0.00 40.84 4.00
2650 2791 2.159517 CCGATAAAACTGTTCCAGCTGC 60.160 50.000 8.66 0.00 34.37 5.25
2809 2950 5.184864 CCTTTGTTCCAGTTATGTTGCCATA 59.815 40.000 0.00 0.00 32.29 2.74
2822 2963 1.691196 TGCCAAGTCCTTTGTTCCAG 58.309 50.000 0.00 0.00 34.87 3.86
2829 2970 0.971386 CAGCCATTGCCAAGTCCTTT 59.029 50.000 0.00 0.00 38.69 3.11
2973 3114 2.520458 CCTGAACCAACTGGCCCA 59.480 61.111 0.00 0.00 39.32 5.36
3180 3321 6.939163 CCCATAACTCCAAATCTCTATCCAAG 59.061 42.308 0.00 0.00 0.00 3.61
3426 3568 5.240713 CAGTAATTGCCCTTGAATCTCAC 57.759 43.478 0.00 0.00 0.00 3.51
3475 3617 9.308318 GTGTTTACTTGTTTGGTTATGTTTCAT 57.692 29.630 0.00 0.00 0.00 2.57
3544 3689 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
3545 3690 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
3546 3691 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
3547 3692 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
3548 3693 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
3549 3694 2.598589 CGACGAGTAATTTGGAACGGA 58.401 47.619 0.00 0.00 0.00 4.69
3550 3695 1.060122 GCGACGAGTAATTTGGAACGG 59.940 52.381 0.00 0.00 0.00 4.44
3551 3696 1.266211 CGCGACGAGTAATTTGGAACG 60.266 52.381 0.00 0.00 0.00 3.95
3552 3697 1.987770 TCGCGACGAGTAATTTGGAAC 59.012 47.619 3.71 0.00 0.00 3.62
3553 3698 1.987770 GTCGCGACGAGTAATTTGGAA 59.012 47.619 25.19 0.00 36.23 3.53
3554 3699 1.068402 TGTCGCGACGAGTAATTTGGA 60.068 47.619 31.88 9.04 36.23 3.53
3555 3700 1.342555 TGTCGCGACGAGTAATTTGG 58.657 50.000 31.88 0.00 36.23 3.28
3556 3701 3.008456 CTTGTCGCGACGAGTAATTTG 57.992 47.619 37.45 18.96 37.90 2.32
3563 3708 2.222508 CCAAATTACTTGTCGCGACGAG 60.223 50.000 41.46 41.46 46.03 4.18
3564 3709 1.722464 CCAAATTACTTGTCGCGACGA 59.278 47.619 31.88 29.34 32.65 4.20
3565 3710 1.722464 TCCAAATTACTTGTCGCGACG 59.278 47.619 31.88 21.77 32.65 5.12
3566 3711 3.476181 GTTCCAAATTACTTGTCGCGAC 58.524 45.455 31.66 31.66 32.65 5.19
3567 3712 2.156117 CGTTCCAAATTACTTGTCGCGA 59.844 45.455 3.71 3.71 32.65 5.87
3568 3713 2.492001 CGTTCCAAATTACTTGTCGCG 58.508 47.619 0.00 0.00 32.65 5.87
3569 3714 2.481185 TCCGTTCCAAATTACTTGTCGC 59.519 45.455 0.00 0.00 32.65 5.19
3570 3715 3.124636 CCTCCGTTCCAAATTACTTGTCG 59.875 47.826 0.00 0.00 32.65 4.35
3571 3716 3.439129 CCCTCCGTTCCAAATTACTTGTC 59.561 47.826 0.00 0.00 32.65 3.18
3572 3717 3.073356 TCCCTCCGTTCCAAATTACTTGT 59.927 43.478 0.00 0.00 32.65 3.16
3573 3718 3.681593 TCCCTCCGTTCCAAATTACTTG 58.318 45.455 0.00 0.00 34.52 3.16
3574 3719 3.329814 ACTCCCTCCGTTCCAAATTACTT 59.670 43.478 0.00 0.00 0.00 2.24
3575 3720 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
3576 3721 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
3577 3722 6.687139 GCTTATACTCCCTCCGTTCCAAATTA 60.687 42.308 0.00 0.00 0.00 1.40
3578 3723 5.681639 CTTATACTCCCTCCGTTCCAAATT 58.318 41.667 0.00 0.00 0.00 1.82
3579 3724 4.444449 GCTTATACTCCCTCCGTTCCAAAT 60.444 45.833 0.00 0.00 0.00 2.32
3580 3725 3.118519 GCTTATACTCCCTCCGTTCCAAA 60.119 47.826 0.00 0.00 0.00 3.28
3581 3726 2.433239 GCTTATACTCCCTCCGTTCCAA 59.567 50.000 0.00 0.00 0.00 3.53
3582 3727 2.037144 GCTTATACTCCCTCCGTTCCA 58.963 52.381 0.00 0.00 0.00 3.53
3583 3728 2.037144 TGCTTATACTCCCTCCGTTCC 58.963 52.381 0.00 0.00 0.00 3.62
3584 3729 3.383825 TCTTGCTTATACTCCCTCCGTTC 59.616 47.826 0.00 0.00 0.00 3.95
3585 3730 3.371965 TCTTGCTTATACTCCCTCCGTT 58.628 45.455 0.00 0.00 0.00 4.44
3586 3731 2.959707 CTCTTGCTTATACTCCCTCCGT 59.040 50.000 0.00 0.00 0.00 4.69
3587 3732 2.959707 ACTCTTGCTTATACTCCCTCCG 59.040 50.000 0.00 0.00 0.00 4.63
3588 3733 6.673839 AATACTCTTGCTTATACTCCCTCC 57.326 41.667 0.00 0.00 0.00 4.30
3589 3734 7.156000 GGAAATACTCTTGCTTATACTCCCTC 58.844 42.308 0.00 0.00 0.00 4.30
3590 3735 6.615726 TGGAAATACTCTTGCTTATACTCCCT 59.384 38.462 0.00 0.00 0.00 4.20
3591 3736 6.827727 TGGAAATACTCTTGCTTATACTCCC 58.172 40.000 0.00 0.00 0.00 4.30
3592 3737 7.329717 CGATGGAAATACTCTTGCTTATACTCC 59.670 40.741 0.00 0.00 0.00 3.85
3593 3738 8.082852 TCGATGGAAATACTCTTGCTTATACTC 58.917 37.037 0.00 0.00 0.00 2.59
3597 3742 6.821388 ACTCGATGGAAATACTCTTGCTTAT 58.179 36.000 0.00 0.00 0.00 1.73
3650 3795 8.098220 TGATCAGTTGATTCATTTTCTCGAAA 57.902 30.769 0.00 0.00 34.37 3.46
3803 3948 8.833493 TCTTTAACTCAGGCAAAAACTAGTTAC 58.167 33.333 8.92 0.00 31.21 2.50
3816 3961 5.752955 TGCACAAATTTTCTTTAACTCAGGC 59.247 36.000 0.00 0.00 0.00 4.85
3989 4141 4.279420 TCATCATATCTCCCAGACTGAACG 59.721 45.833 3.32 0.00 0.00 3.95
4003 4155 9.524106 CTTTCTCAGCTATCAGATCATCATATC 57.476 37.037 0.00 0.00 0.00 1.63
4076 4228 0.675633 CTTTTGCTGGGTTGACCTGG 59.324 55.000 0.00 0.00 41.11 4.45
4107 4259 3.855858 TCTTCTGTTGTTTGGTTTTGGC 58.144 40.909 0.00 0.00 0.00 4.52
4114 4266 4.843220 ATCTGCTTCTTCTGTTGTTTGG 57.157 40.909 0.00 0.00 0.00 3.28
4119 4271 3.870419 GCCTCTATCTGCTTCTTCTGTTG 59.130 47.826 0.00 0.00 0.00 3.33
4157 4309 1.983691 CTCCCTATGACATGGCCATCT 59.016 52.381 17.61 3.40 0.00 2.90
4287 4439 4.051661 TCTGCAATCCCTGGAAAAAGAT 57.948 40.909 0.00 0.00 0.00 2.40
4349 4501 7.619050 TCATCTTCTTCTTGCTTACTTGATCT 58.381 34.615 0.00 0.00 0.00 2.75
4391 4543 1.294659 CCGAGCTTCCTGCAGACAAC 61.295 60.000 17.39 1.65 45.94 3.32
4439 4591 4.272991 GCAGTTTCAATGGCAATTGTTGAA 59.727 37.500 13.57 15.11 43.21 2.69
4486 4638 5.957842 TGGTGCTCGAAAAATATTTCTGT 57.042 34.783 0.10 0.00 42.29 3.41
4567 4719 7.795482 TTGTACAATTTCCCTAATGGATACG 57.205 36.000 3.59 0.00 44.66 3.06
4707 4864 2.616634 TGCTGAGGAGCTGAATCATC 57.383 50.000 0.00 0.00 46.39 2.92
4779 4936 8.217111 TGATACCAAGTGGAGATTGCAATTATA 58.783 33.333 14.33 0.00 38.94 0.98
4853 5010 9.950496 AAGTACAAGCTACTACTTACTAGTGTA 57.050 33.333 5.39 0.00 36.29 2.90
5163 5320 5.365605 ACTTACTTGGATCGATTGTATCCCA 59.634 40.000 0.00 0.00 42.00 4.37
5237 5394 8.564574 AGAATAATGCGTTTTGACTCTAAAACA 58.435 29.630 12.73 5.58 45.98 2.83
5400 5559 4.362932 TCTTGTTTTCGACATTGCACAA 57.637 36.364 0.00 0.00 38.26 3.33
5491 5650 2.092323 GCCATGTTTCCCTTGGTCTAC 58.908 52.381 0.00 0.00 39.89 2.59
5504 5663 3.133464 CCGCACGATGGCCATGTT 61.133 61.111 26.56 6.38 0.00 2.71
5515 5674 1.781429 CGATCTGAATAGTTCCGCACG 59.219 52.381 0.00 0.00 0.00 5.34
5525 5684 3.229697 TGGAGAGCCTCGATCTGAATA 57.770 47.619 0.00 0.00 34.31 1.75
5666 5825 1.003223 GGTTCAACGACCCGAAACAAG 60.003 52.381 0.00 0.00 33.41 3.16
5726 5885 4.261578 CAAATCATGCACTCCCAAAAGT 57.738 40.909 0.00 0.00 0.00 2.66
5858 6017 5.356751 CACCTTTTGCTGGCACTGTATATTA 59.643 40.000 0.00 0.00 0.00 0.98
5930 6096 5.335897 GCTGCTGATTCATGAACAGGTAAAA 60.336 40.000 25.76 1.38 33.00 1.52
6069 6250 8.930760 GGATAGAATGTGTGAATCATAACTAGC 58.069 37.037 0.00 0.00 0.00 3.42
6070 6251 9.987272 TGGATAGAATGTGTGAATCATAACTAG 57.013 33.333 0.00 0.00 0.00 2.57
6077 6258 8.578448 TGAATTTGGATAGAATGTGTGAATCA 57.422 30.769 0.00 0.00 0.00 2.57
6226 6408 8.669243 GCTGTAGCTTCATCTAAAACAAGTATT 58.331 33.333 0.00 0.00 38.21 1.89
6313 6495 3.851403 GTGCAATTGTAATAACCGTGCAG 59.149 43.478 7.40 0.00 36.74 4.41
6319 6501 7.309194 GGGATCCTATGTGCAATTGTAATAACC 60.309 40.741 12.58 0.00 0.00 2.85
6337 6519 1.128200 CAATCACGGTGGGGATCCTA 58.872 55.000 12.58 0.00 0.00 2.94
6400 6582 7.147742 TGGAAACTAAAATCCTTTGAGTGCTTT 60.148 33.333 0.00 0.00 36.64 3.51
6419 6603 6.951198 TCAACACCCAATTATATGTGGAAACT 59.049 34.615 4.17 0.00 37.03 2.66
6420 6604 7.164230 TCAACACCCAATTATATGTGGAAAC 57.836 36.000 4.17 0.00 37.03 2.78
6424 6608 4.889409 AGCTCAACACCCAATTATATGTGG 59.111 41.667 0.00 0.00 33.07 4.17
6427 6611 5.163530 TGCAAGCTCAACACCCAATTATATG 60.164 40.000 0.00 0.00 0.00 1.78
6432 6616 1.069049 GTGCAAGCTCAACACCCAATT 59.931 47.619 0.00 0.00 0.00 2.32
6433 6617 0.675633 GTGCAAGCTCAACACCCAAT 59.324 50.000 0.00 0.00 0.00 3.16
6435 6619 0.395586 AAGTGCAAGCTCAACACCCA 60.396 50.000 9.40 0.00 34.83 4.51
6443 6627 2.412421 CTTGTTGGAAGTGCAAGCTC 57.588 50.000 0.00 0.00 34.16 4.09
6446 6630 1.406539 ACAGCTTGTTGGAAGTGCAAG 59.593 47.619 0.00 0.00 41.61 4.01
6447 6631 1.134753 CACAGCTTGTTGGAAGTGCAA 59.865 47.619 0.00 0.00 0.00 4.08
6487 6673 6.648725 GCCTGCAATACAAATTGGTAAGAAAA 59.351 34.615 0.00 0.00 42.39 2.29
6493 6679 3.446873 CCTGCCTGCAATACAAATTGGTA 59.553 43.478 0.00 0.00 42.39 3.25
6495 6681 2.496871 TCCTGCCTGCAATACAAATTGG 59.503 45.455 0.00 0.00 42.39 3.16
6502 6688 4.282195 ACTCTAGTATCCTGCCTGCAATAC 59.718 45.833 6.04 6.04 0.00 1.89
6504 6690 3.312890 ACTCTAGTATCCTGCCTGCAAT 58.687 45.455 0.00 0.00 0.00 3.56
6505 6691 2.752030 ACTCTAGTATCCTGCCTGCAA 58.248 47.619 0.00 0.00 0.00 4.08
6512 6698 5.980116 CGGTGAATCAAACTCTAGTATCCTG 59.020 44.000 0.00 0.00 0.00 3.86
6530 6716 3.592059 CCGAAGTAGATTTTCCGGTGAA 58.408 45.455 0.00 0.00 0.00 3.18
6549 6735 3.474600 AGAAAGCTGATGATTCATCCCG 58.525 45.455 21.08 14.09 39.87 5.14
6591 6777 2.003548 GGCCCTCTGACCTTCCCAT 61.004 63.158 0.00 0.00 0.00 4.00
6671 6857 6.042777 GTCAGAGCTTATATGTACACAAGCA 58.957 40.000 27.34 13.22 44.59 3.91
6702 6888 5.221224 TGTTTCCAAGTGCTGTATTTCCTTG 60.221 40.000 0.00 0.00 33.88 3.61
6718 6904 8.103935 ACTAAACCAATTTTTCCTTGTTTCCAA 58.896 29.630 0.00 0.00 0.00 3.53
6719 6905 7.550906 CACTAAACCAATTTTTCCTTGTTTCCA 59.449 33.333 0.00 0.00 0.00 3.53
6734 6920 3.137544 TCACCAGTCACCACTAAACCAAT 59.862 43.478 0.00 0.00 0.00 3.16
6841 7028 2.486203 GGCCATACGACATGAACAAACA 59.514 45.455 0.00 0.00 0.00 2.83
6852 7039 4.054780 TCACTTAGATTGGCCATACGAC 57.945 45.455 6.09 0.00 0.00 4.34
6934 7121 6.815089 TGGCAACATTCTGTTTGAAAATAGT 58.185 32.000 0.00 0.00 46.17 2.12
7005 7192 4.274147 TGTTGTCCTGAAAAAGCTAACCA 58.726 39.130 0.00 0.00 0.00 3.67
7007 7194 5.527582 TCTCTGTTGTCCTGAAAAAGCTAAC 59.472 40.000 0.00 0.00 0.00 2.34
7022 7209 1.451936 GCCTGTGGGTCTCTGTTGT 59.548 57.895 0.00 0.00 34.45 3.32
7063 7251 1.334243 GCTGATGCCTGCTTCATCTTC 59.666 52.381 8.00 3.84 40.59 2.87
7145 7342 5.348164 TGCTTTTACTCTTTTTGGCAACTC 58.652 37.500 0.00 0.00 37.61 3.01
7152 7349 4.151157 GCTGGCATGCTTTTACTCTTTTTG 59.849 41.667 18.92 0.00 0.00 2.44
7221 7418 0.390866 CTCAGCAACTGCGGATCACT 60.391 55.000 0.00 0.00 43.76 3.41
7224 7421 0.809241 CCTCTCAGCAACTGCGGATC 60.809 60.000 0.00 0.00 43.76 3.36
7493 7695 3.914364 AGAAAGAAACGAAATGCGAATGC 59.086 39.130 0.00 0.00 44.57 3.56
7494 7696 5.385617 AGAGAAAGAAACGAAATGCGAATG 58.614 37.500 0.00 0.00 44.57 2.67
7495 7697 5.390991 GGAGAGAAAGAAACGAAATGCGAAT 60.391 40.000 0.00 0.00 44.57 3.34
7496 7698 4.084013 GGAGAGAAAGAAACGAAATGCGAA 60.084 41.667 0.00 0.00 44.57 4.70
7497 7699 3.432252 GGAGAGAAAGAAACGAAATGCGA 59.568 43.478 0.00 0.00 44.57 5.10
7499 7701 3.502211 TGGGAGAGAAAGAAACGAAATGC 59.498 43.478 0.00 0.00 0.00 3.56
7500 7702 5.239525 ACTTGGGAGAGAAAGAAACGAAATG 59.760 40.000 0.00 0.00 0.00 2.32
7501 7703 5.239525 CACTTGGGAGAGAAAGAAACGAAAT 59.760 40.000 0.00 0.00 0.00 2.17
7520 7722 0.248866 GTGTTGCCCGTTTCCACTTG 60.249 55.000 0.00 0.00 0.00 3.16
7551 7753 2.053865 TCGATACGTGGTGGACCCC 61.054 63.158 0.00 0.00 34.29 4.95
7552 7754 1.140375 GTCGATACGTGGTGGACCC 59.860 63.158 0.00 0.00 34.29 4.46
7553 7755 1.226491 CGTCGATACGTGGTGGACC 60.226 63.158 0.00 0.00 44.21 4.46
7554 7756 4.372235 CGTCGATACGTGGTGGAC 57.628 61.111 0.00 3.07 44.21 4.02
7563 7765 0.940126 TCGCCTTAGGACGTCGATAC 59.060 55.000 9.92 0.00 0.00 2.24
7564 7766 1.888215 ATCGCCTTAGGACGTCGATA 58.112 50.000 9.92 2.04 38.00 2.92
7565 7767 1.805345 CTATCGCCTTAGGACGTCGAT 59.195 52.381 9.92 14.04 41.83 3.59
7566 7768 1.224075 CTATCGCCTTAGGACGTCGA 58.776 55.000 9.92 1.22 0.00 4.20
7567 7769 0.385723 GCTATCGCCTTAGGACGTCG 60.386 60.000 9.92 0.00 0.00 5.12
7568 7770 0.385723 CGCTATCGCCTTAGGACGTC 60.386 60.000 7.13 7.13 0.00 4.34
7569 7771 0.816825 TCGCTATCGCCTTAGGACGT 60.817 55.000 0.69 0.00 35.26 4.34
7570 7772 0.110147 CTCGCTATCGCCTTAGGACG 60.110 60.000 0.69 5.55 35.26 4.79
7571 7773 0.241481 CCTCGCTATCGCCTTAGGAC 59.759 60.000 0.69 0.00 31.88 3.85
7572 7774 1.524863 GCCTCGCTATCGCCTTAGGA 61.525 60.000 0.69 0.00 31.88 2.94
7573 7775 1.080434 GCCTCGCTATCGCCTTAGG 60.080 63.158 0.00 0.00 35.26 2.69
7574 7776 1.442857 CGCCTCGCTATCGCCTTAG 60.443 63.158 0.00 0.00 35.26 2.18
7575 7777 1.895231 TCGCCTCGCTATCGCCTTA 60.895 57.895 0.00 0.00 35.26 2.69
7576 7778 3.217017 TCGCCTCGCTATCGCCTT 61.217 61.111 0.00 0.00 35.26 4.35
7577 7779 3.967335 GTCGCCTCGCTATCGCCT 61.967 66.667 0.00 0.00 35.26 5.52
7597 7799 3.365291 TAACCCTAGCACAGCCGCG 62.365 63.158 0.00 0.00 36.85 6.46
7598 7800 1.521681 CTAACCCTAGCACAGCCGC 60.522 63.158 0.00 0.00 0.00 6.53
7599 7801 1.144057 CCTAACCCTAGCACAGCCG 59.856 63.158 0.00 0.00 0.00 5.52
7600 7802 1.272554 ACCCTAACCCTAGCACAGCC 61.273 60.000 0.00 0.00 0.00 4.85
7601 7803 0.618981 AACCCTAACCCTAGCACAGC 59.381 55.000 0.00 0.00 0.00 4.40
7602 7804 2.677037 CGAAACCCTAACCCTAGCACAG 60.677 54.545 0.00 0.00 0.00 3.66
7603 7805 1.276989 CGAAACCCTAACCCTAGCACA 59.723 52.381 0.00 0.00 0.00 4.57
7604 7806 1.551883 TCGAAACCCTAACCCTAGCAC 59.448 52.381 0.00 0.00 0.00 4.40
7605 7807 1.829222 CTCGAAACCCTAACCCTAGCA 59.171 52.381 0.00 0.00 0.00 3.49
7606 7808 1.472904 GCTCGAAACCCTAACCCTAGC 60.473 57.143 0.00 0.00 0.00 3.42
7607 7809 1.829222 TGCTCGAAACCCTAACCCTAG 59.171 52.381 0.00 0.00 0.00 3.02
7608 7810 1.551883 GTGCTCGAAACCCTAACCCTA 59.448 52.381 0.00 0.00 0.00 3.53
7609 7811 0.323957 GTGCTCGAAACCCTAACCCT 59.676 55.000 0.00 0.00 0.00 4.34
7610 7812 1.017701 CGTGCTCGAAACCCTAACCC 61.018 60.000 1.00 0.00 39.71 4.11
7611 7813 1.017701 CCGTGCTCGAAACCCTAACC 61.018 60.000 10.21 0.00 39.71 2.85
7612 7814 1.017701 CCCGTGCTCGAAACCCTAAC 61.018 60.000 10.21 0.00 39.71 2.34
7613 7815 1.294138 CCCGTGCTCGAAACCCTAA 59.706 57.895 10.21 0.00 39.71 2.69
7614 7816 2.652095 CCCCGTGCTCGAAACCCTA 61.652 63.158 10.21 0.00 39.71 3.53
7615 7817 4.016706 CCCCGTGCTCGAAACCCT 62.017 66.667 10.21 0.00 39.71 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.