Multiple sequence alignment - TraesCS3D01G385700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G385700 chr3D 100.000 4725 0 0 1 4725 501165881 501161157 0.000000e+00 8726.0
1 TraesCS3D01G385700 chr3D 93.599 953 50 5 2854 3806 501078368 501077427 0.000000e+00 1411.0
2 TraesCS3D01G385700 chr3D 91.195 795 56 7 1474 2266 501086842 501086060 0.000000e+00 1068.0
3 TraesCS3D01G385700 chr3D 84.516 155 18 2 3806 3959 2137846 2137697 1.060000e-31 148.0
4 TraesCS3D01G385700 chr3D 83.193 119 19 1 3806 3924 378570804 378570921 1.800000e-19 108.0
5 TraesCS3D01G385700 chr3A 90.659 1456 76 30 2368 3808 640750332 640748922 0.000000e+00 1881.0
6 TraesCS3D01G385700 chr3A 94.556 900 44 3 2850 3749 640699825 640698931 0.000000e+00 1386.0
7 TraesCS3D01G385700 chr3A 90.918 980 51 14 2851 3808 640679942 640678979 0.000000e+00 1282.0
8 TraesCS3D01G385700 chr3A 88.784 954 82 6 2853 3806 640626102 640625174 0.000000e+00 1146.0
9 TraesCS3D01G385700 chr3A 86.259 997 58 34 743 1698 640752181 640751223 0.000000e+00 1009.0
10 TraesCS3D01G385700 chr3A 88.586 806 56 15 1474 2276 640632027 640631255 0.000000e+00 946.0
11 TraesCS3D01G385700 chr3A 88.462 806 57 15 1474 2276 640702434 640701662 0.000000e+00 941.0
12 TraesCS3D01G385700 chr3A 93.313 643 28 1 1697 2339 640751135 640750508 0.000000e+00 935.0
13 TraesCS3D01G385700 chr3A 88.101 437 46 5 87 518 640752847 640752412 9.070000e-142 514.0
14 TraesCS3D01G385700 chr3A 88.679 424 24 7 1474 1897 640682550 640682151 3.280000e-136 496.0
15 TraesCS3D01G385700 chr3A 91.429 105 8 1 814 918 640752574 640752471 4.930000e-30 143.0
16 TraesCS3D01G385700 chr3A 100.000 30 0 0 2446 2475 640750193 640750164 6.610000e-04 56.5
17 TraesCS3D01G385700 chr3B 89.295 1504 82 21 1113 2584 662798857 662797401 0.000000e+00 1812.0
18 TraesCS3D01G385700 chr3B 93.316 1167 67 6 2592 3752 662797281 662796120 0.000000e+00 1712.0
19 TraesCS3D01G385700 chr3B 91.396 953 71 6 2854 3806 662551726 662550785 0.000000e+00 1295.0
20 TraesCS3D01G385700 chr3B 91.853 761 55 6 1474 2233 662556971 662556217 0.000000e+00 1055.0
21 TraesCS3D01G385700 chr3B 85.257 1031 75 26 105 1097 662799831 662798840 0.000000e+00 990.0
22 TraesCS3D01G385700 chr3B 92.903 155 10 1 3806 3959 381463492 381463646 1.710000e-54 224.0
23 TraesCS3D01G385700 chr3B 86.631 187 21 4 3956 4140 806129145 806129329 2.230000e-48 204.0
24 TraesCS3D01G385700 chr3B 85.024 207 18 6 3957 4161 703906340 703906535 1.040000e-46 198.0
25 TraesCS3D01G385700 chr5B 90.603 862 76 4 2873 3730 426559137 426558277 0.000000e+00 1138.0
26 TraesCS3D01G385700 chr5B 88.727 550 57 4 1697 2245 426565689 426565144 0.000000e+00 667.0
27 TraesCS3D01G385700 chr5B 94.667 225 12 0 1474 1698 426566006 426565782 2.710000e-92 350.0
28 TraesCS3D01G385700 chr5B 84.409 186 28 1 3956 4140 468688816 468689001 1.040000e-41 182.0
29 TraesCS3D01G385700 chr5B 80.000 125 19 5 3795 3917 477420612 477420492 2.340000e-13 87.9
30 TraesCS3D01G385700 chr5B 80.870 115 16 5 3806 3917 557951626 557951737 8.420000e-13 86.1
31 TraesCS3D01G385700 chr7D 88.852 906 94 4 2838 3743 54923190 54922292 0.000000e+00 1107.0
32 TraesCS3D01G385700 chr7D 91.400 593 48 2 1697 2289 54926445 54925856 0.000000e+00 809.0
33 TraesCS3D01G385700 chr7D 80.276 507 69 21 1214 1698 54927024 54926527 2.090000e-93 353.0
34 TraesCS3D01G385700 chr7A 91.698 795 39 9 3956 4725 453715755 453714963 0.000000e+00 1077.0
35 TraesCS3D01G385700 chr7A 91.611 596 44 4 1697 2289 58209001 58209593 0.000000e+00 819.0
36 TraesCS3D01G385700 chr7A 92.500 40 2 1 4634 4673 453715015 453714977 6.610000e-04 56.5
37 TraesCS3D01G385700 chr4D 87.550 249 22 9 3958 4202 471192813 471192570 3.600000e-71 279.0
38 TraesCS3D01G385700 chr4D 86.022 186 20 5 3958 4140 222202055 222201873 1.340000e-45 195.0
39 TraesCS3D01G385700 chrUn 88.517 209 19 4 4196 4403 248809604 248809808 1.020000e-61 248.0
40 TraesCS3D01G385700 chrUn 88.517 209 19 4 4196 4403 248821308 248821512 1.020000e-61 248.0
41 TraesCS3D01G385700 chrUn 87.330 221 23 4 4196 4415 258230326 258230110 1.020000e-61 248.0
42 TraesCS3D01G385700 chr1A 91.613 155 12 1 3806 3959 544123629 544123475 3.700000e-51 213.0
43 TraesCS3D01G385700 chr6A 87.027 185 20 4 3958 4140 12146467 12146285 6.200000e-49 206.0
44 TraesCS3D01G385700 chr1B 86.559 186 20 5 3957 4140 470716109 470715927 2.880000e-47 200.0
45 TraesCS3D01G385700 chr2D 83.333 180 26 3 3957 4135 633225403 633225579 3.780000e-36 163.0
46 TraesCS3D01G385700 chr2D 96.875 32 1 0 3957 3988 412042841 412042872 2.000000e-03 54.7
47 TraesCS3D01G385700 chr6B 80.870 115 15 6 3806 3917 686814819 686814709 3.030000e-12 84.2
48 TraesCS3D01G385700 chr2A 80.531 113 17 4 3807 3917 430694425 430694534 1.090000e-11 82.4
49 TraesCS3D01G385700 chr4B 91.525 59 3 2 4329 4386 404626682 404626625 3.920000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G385700 chr3D 501161157 501165881 4724 True 8726.000000 8726 100.000000 1 4725 1 chr3D.!!$R4 4724
1 TraesCS3D01G385700 chr3D 501077427 501078368 941 True 1411.000000 1411 93.599000 2854 3806 1 chr3D.!!$R2 952
2 TraesCS3D01G385700 chr3D 501086060 501086842 782 True 1068.000000 1068 91.195000 1474 2266 1 chr3D.!!$R3 792
3 TraesCS3D01G385700 chr3A 640698931 640702434 3503 True 1163.500000 1386 91.509000 1474 3749 2 chr3A.!!$R4 2275
4 TraesCS3D01G385700 chr3A 640625174 640626102 928 True 1146.000000 1146 88.784000 2853 3806 1 chr3A.!!$R1 953
5 TraesCS3D01G385700 chr3A 640631255 640632027 772 True 946.000000 946 88.586000 1474 2276 1 chr3A.!!$R2 802
6 TraesCS3D01G385700 chr3A 640678979 640682550 3571 True 889.000000 1282 89.798500 1474 3808 2 chr3A.!!$R3 2334
7 TraesCS3D01G385700 chr3A 640748922 640752847 3925 True 756.416667 1881 91.626833 87 3808 6 chr3A.!!$R5 3721
8 TraesCS3D01G385700 chr3B 662796120 662799831 3711 True 1504.666667 1812 89.289333 105 3752 3 chr3B.!!$R3 3647
9 TraesCS3D01G385700 chr3B 662550785 662551726 941 True 1295.000000 1295 91.396000 2854 3806 1 chr3B.!!$R1 952
10 TraesCS3D01G385700 chr3B 662556217 662556971 754 True 1055.000000 1055 91.853000 1474 2233 1 chr3B.!!$R2 759
11 TraesCS3D01G385700 chr5B 426558277 426559137 860 True 1138.000000 1138 90.603000 2873 3730 1 chr5B.!!$R1 857
12 TraesCS3D01G385700 chr5B 426565144 426566006 862 True 508.500000 667 91.697000 1474 2245 2 chr5B.!!$R3 771
13 TraesCS3D01G385700 chr7D 54922292 54927024 4732 True 756.333333 1107 86.842667 1214 3743 3 chr7D.!!$R1 2529
14 TraesCS3D01G385700 chr7A 58209001 58209593 592 False 819.000000 819 91.611000 1697 2289 1 chr7A.!!$F1 592
15 TraesCS3D01G385700 chr7A 453714963 453715755 792 True 566.750000 1077 92.099000 3956 4725 2 chr7A.!!$R1 769

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
135 138 0.167908 TGCCATCTAAAACGCGCAAG 59.832 50.0 5.73 0.00 43.44 4.01 F
474 481 0.323302 TATCCCGCTGTGTGCTTTCA 59.677 50.0 0.00 0.00 40.11 2.69 F
574 627 0.387202 TTTTGACCAATGTGCACCCG 59.613 50.0 15.69 2.06 0.00 5.28 F
925 1003 0.748450 TAAACCTATCCCCGCTGTCG 59.252 55.0 0.00 0.00 0.00 4.35 F
2400 3547 0.039256 GTCAAGGCACCACGTACGTA 60.039 55.0 22.34 0.00 0.00 3.57 F
2401 3548 0.039256 TCAAGGCACCACGTACGTAC 60.039 55.0 22.34 15.90 0.00 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1108 1213 0.519077 CGACTTTTTCCTCTGCCTGC 59.481 55.000 0.00 0.00 0.00 4.85 R
1362 1506 0.810016 GCGTTACCGAGGAGAAGAGT 59.190 55.000 0.00 0.00 35.63 3.24 R
2345 3475 1.068748 GCATGGCTCAATCATAAGCGG 60.069 52.381 0.00 0.00 39.47 5.52 R
2585 5244 0.452618 TGGAACGAACGTACGTAGCG 60.453 55.000 29.81 29.81 45.83 4.26 R
3683 8073 0.099259 CTATACCACCGTGCGACGAA 59.901 55.000 0.00 0.00 46.05 3.85 R
3907 8319 0.107410 TGACTTGCCGTTGTTCAGGT 60.107 50.000 0.00 0.00 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.296056 ACTGTTTATAGAGGGTGTAGGGG 58.704 47.826 0.00 0.00 0.00 4.79
25 26 3.043418 TGTTTATAGAGGGTGTAGGGGC 58.957 50.000 0.00 0.00 0.00 5.80
26 27 2.005370 TTATAGAGGGTGTAGGGGCG 57.995 55.000 0.00 0.00 0.00 6.13
27 28 1.151760 TATAGAGGGTGTAGGGGCGA 58.848 55.000 0.00 0.00 0.00 5.54
28 29 0.263765 ATAGAGGGTGTAGGGGCGAA 59.736 55.000 0.00 0.00 0.00 4.70
29 30 0.263765 TAGAGGGTGTAGGGGCGAAT 59.736 55.000 0.00 0.00 0.00 3.34
30 31 1.049289 AGAGGGTGTAGGGGCGAATC 61.049 60.000 0.00 0.00 0.00 2.52
31 32 2.041206 GAGGGTGTAGGGGCGAATCC 62.041 65.000 0.00 0.00 0.00 3.01
32 33 2.070650 GGGTGTAGGGGCGAATCCT 61.071 63.158 0.00 0.00 38.36 3.24
33 34 1.146263 GGTGTAGGGGCGAATCCTG 59.854 63.158 0.00 0.00 35.92 3.86
34 35 1.623542 GGTGTAGGGGCGAATCCTGT 61.624 60.000 0.00 0.00 35.92 4.00
35 36 0.252197 GTGTAGGGGCGAATCCTGTT 59.748 55.000 0.00 0.00 35.92 3.16
36 37 0.251916 TGTAGGGGCGAATCCTGTTG 59.748 55.000 0.00 0.00 35.92 3.33
37 38 0.252197 GTAGGGGCGAATCCTGTTGT 59.748 55.000 0.00 0.00 35.92 3.32
38 39 0.988832 TAGGGGCGAATCCTGTTGTT 59.011 50.000 0.00 0.00 35.92 2.83
39 40 0.322546 AGGGGCGAATCCTGTTGTTC 60.323 55.000 0.00 0.00 32.53 3.18
40 41 0.322546 GGGGCGAATCCTGTTGTTCT 60.323 55.000 0.00 0.00 34.39 3.01
41 42 1.534729 GGGCGAATCCTGTTGTTCTT 58.465 50.000 0.00 0.00 34.39 2.52
42 43 1.886542 GGGCGAATCCTGTTGTTCTTT 59.113 47.619 0.00 0.00 34.39 2.52
43 44 2.351738 GGGCGAATCCTGTTGTTCTTTG 60.352 50.000 0.00 0.00 34.39 2.77
44 45 2.319472 GCGAATCCTGTTGTTCTTTGC 58.681 47.619 0.00 0.00 0.00 3.68
45 46 2.922335 GCGAATCCTGTTGTTCTTTGCC 60.922 50.000 0.00 0.00 0.00 4.52
46 47 2.293122 CGAATCCTGTTGTTCTTTGCCA 59.707 45.455 0.00 0.00 0.00 4.92
47 48 3.642705 GAATCCTGTTGTTCTTTGCCAC 58.357 45.455 0.00 0.00 0.00 5.01
48 49 2.136298 TCCTGTTGTTCTTTGCCACA 57.864 45.000 0.00 0.00 0.00 4.17
49 50 2.665165 TCCTGTTGTTCTTTGCCACAT 58.335 42.857 0.00 0.00 0.00 3.21
50 51 3.030291 TCCTGTTGTTCTTTGCCACATT 58.970 40.909 0.00 0.00 0.00 2.71
51 52 3.450457 TCCTGTTGTTCTTTGCCACATTT 59.550 39.130 0.00 0.00 0.00 2.32
52 53 4.081198 TCCTGTTGTTCTTTGCCACATTTT 60.081 37.500 0.00 0.00 0.00 1.82
53 54 4.635324 CCTGTTGTTCTTTGCCACATTTTT 59.365 37.500 0.00 0.00 0.00 1.94
78 79 3.374220 TTCTTTGCAGAAGTTGGCATG 57.626 42.857 0.00 0.00 40.17 4.06
79 80 1.000060 TCTTTGCAGAAGTTGGCATGC 60.000 47.619 9.90 9.90 40.17 4.06
80 81 0.318869 TTTGCAGAAGTTGGCATGCG 60.319 50.000 12.44 0.00 41.58 4.73
81 82 1.454572 TTGCAGAAGTTGGCATGCGT 61.455 50.000 12.44 0.00 41.58 5.24
82 83 1.286880 GCAGAAGTTGGCATGCGTT 59.713 52.632 12.44 2.09 0.00 4.84
83 84 0.318955 GCAGAAGTTGGCATGCGTTT 60.319 50.000 12.44 2.92 0.00 3.60
84 85 1.689959 CAGAAGTTGGCATGCGTTTC 58.310 50.000 12.44 11.98 0.00 2.78
85 86 1.267806 CAGAAGTTGGCATGCGTTTCT 59.732 47.619 12.44 13.94 0.00 2.52
92 93 1.001487 TGGCATGCGTTTCTGAAACTG 60.001 47.619 25.64 19.35 39.23 3.16
101 102 1.961793 TTCTGAAACTGTGAACCCCG 58.038 50.000 0.00 0.00 0.00 5.73
103 104 0.944386 CTGAAACTGTGAACCCCGTG 59.056 55.000 0.00 0.00 0.00 4.94
119 120 1.599419 CCGTGCAACACTAAACTTGCC 60.599 52.381 0.00 0.00 41.83 4.52
135 138 0.167908 TGCCATCTAAAACGCGCAAG 59.832 50.000 5.73 0.00 43.44 4.01
152 155 2.524306 CAAGTGCCAAACCCTCCAATA 58.476 47.619 0.00 0.00 0.00 1.90
180 183 4.957296 TCGCCAGATATTAGGGTTTCTTC 58.043 43.478 0.00 0.00 0.00 2.87
272 277 7.170965 ACCTGTACATTGATCAGTTCTCAATT 58.829 34.615 0.00 0.00 40.47 2.32
282 287 5.060662 TCAGTTCTCAATTGAGTAGTCGG 57.939 43.478 29.80 19.21 42.60 4.79
303 308 2.494870 GCTGAGACAAAGGCATTCCATT 59.505 45.455 0.00 0.00 33.74 3.16
317 322 5.343249 GCATTCCATTAACACATTCTGTCC 58.657 41.667 0.00 0.00 30.29 4.02
342 347 0.874607 GTATTACTCGTGCCAGCCGG 60.875 60.000 0.00 0.00 0.00 6.13
343 348 1.324740 TATTACTCGTGCCAGCCGGT 61.325 55.000 1.90 0.00 33.28 5.28
352 357 1.976474 GCCAGCCGGTCCAATTTGA 60.976 57.895 1.90 0.00 33.28 2.69
392 397 5.948758 TGCCATCATGTAATTAACACCAAGA 59.051 36.000 0.00 0.00 42.09 3.02
439 444 4.440112 GCACTTCAATTGGCACCCTTATAC 60.440 45.833 5.42 0.00 0.00 1.47
470 477 1.553690 AACCTATCCCGCTGTGTGCT 61.554 55.000 0.00 0.00 40.11 4.40
474 481 0.323302 TATCCCGCTGTGTGCTTTCA 59.677 50.000 0.00 0.00 40.11 2.69
529 582 7.324354 TCAAACAGTTAAGGAGGTTTGTTAC 57.676 36.000 13.68 0.00 46.17 2.50
574 627 0.387202 TTTTGACCAATGTGCACCCG 59.613 50.000 15.69 2.06 0.00 5.28
678 738 2.355756 CCAAGGCCATTTACTCATGACG 59.644 50.000 5.01 0.00 0.00 4.35
686 746 5.050091 GCCATTTACTCATGACGTTCCATAG 60.050 44.000 0.00 0.00 0.00 2.23
696 756 5.907866 TGACGTTCCATAGACACATTCTA 57.092 39.130 0.00 0.00 41.29 2.10
706 766 6.951198 CCATAGACACATTCTATCCTAGGAGT 59.049 42.308 18.34 6.68 44.57 3.85
707 767 8.110271 CCATAGACACATTCTATCCTAGGAGTA 58.890 40.741 18.34 8.87 44.57 2.59
708 768 9.693739 CATAGACACATTCTATCCTAGGAGTAT 57.306 37.037 18.34 6.75 44.57 2.12
738 798 1.442148 CCAGCCGGCCTAGTTAGAC 59.558 63.158 26.15 0.00 0.00 2.59
759 831 6.261118 AGACTGTACCAAAATATACGACGTC 58.739 40.000 2.43 5.18 0.00 4.34
805 877 5.866335 AAAACGCTTGATATTTCGGTACA 57.134 34.783 0.00 0.00 0.00 2.90
888 960 0.889994 TCATGCACTCCAATTGGCAC 59.110 50.000 20.33 9.01 39.34 5.01
903 978 1.346395 TGGCACCCTTATATACGCCAG 59.654 52.381 0.00 0.00 44.27 4.85
905 980 2.413837 GCACCCTTATATACGCCAGTG 58.586 52.381 0.00 0.00 0.00 3.66
910 985 5.464389 CACCCTTATATACGCCAGTGTAAAC 59.536 44.000 0.00 0.00 0.00 2.01
911 986 4.992951 CCCTTATATACGCCAGTGTAAACC 59.007 45.833 0.00 0.00 0.00 3.27
912 987 5.221581 CCCTTATATACGCCAGTGTAAACCT 60.222 44.000 0.00 0.00 0.00 3.50
914 989 7.310237 CCCTTATATACGCCAGTGTAAACCTAT 60.310 40.741 0.00 0.00 0.00 2.57
918 996 1.474498 CGCCAGTGTAAACCTATCCCC 60.474 57.143 0.00 0.00 0.00 4.81
925 1003 0.748450 TAAACCTATCCCCGCTGTCG 59.252 55.000 0.00 0.00 0.00 4.35
938 1016 2.930040 CCGCTGTCGATTATTGTTCAGT 59.070 45.455 0.00 0.00 38.10 3.41
1062 1167 5.795939 CGAAAGGGACGAGATAAATATCGAG 59.204 44.000 13.40 3.71 43.57 4.04
1072 1177 7.041508 ACGAGATAAATATCGAGAACGTAAGGT 60.042 37.037 13.40 0.00 43.57 3.50
1082 1187 2.036733 AGAACGTAAGGTGTAGCTGCAA 59.963 45.455 5.91 0.00 37.50 4.08
1108 1213 1.716172 TCGTCGACGAGCAGATCAG 59.284 57.895 34.97 4.96 44.22 2.90
1150 1265 5.452776 CGAGTTATCAAGCCACCAAGGTATA 60.453 44.000 0.00 0.00 40.61 1.47
1151 1266 6.515512 AGTTATCAAGCCACCAAGGTATAT 57.484 37.500 0.00 0.00 40.61 0.86
1152 1267 7.524863 CGAGTTATCAAGCCACCAAGGTATATA 60.525 40.741 0.00 0.00 40.61 0.86
1153 1268 8.219660 AGTTATCAAGCCACCAAGGTATATAT 57.780 34.615 0.00 0.00 40.61 0.86
1162 1277 7.839200 AGCCACCAAGGTATATATGTTTTCTTT 59.161 33.333 0.00 0.00 40.61 2.52
1362 1506 4.119363 GGAGCTCATGGGGCTGCA 62.119 66.667 17.19 0.00 45.30 4.41
1410 1558 1.630148 TTTCGTTTTGTTGTTGCCCG 58.370 45.000 0.00 0.00 0.00 6.13
1437 1634 3.637998 CATCCACTTATGCTTGATGCC 57.362 47.619 0.00 0.00 42.00 4.40
1555 1762 1.302285 CCTCAAGGTCCAGCTGCAT 59.698 57.895 8.66 0.00 0.00 3.96
2117 3111 3.112709 GGAAGTGCGACGTGGAGC 61.113 66.667 0.11 0.55 0.00 4.70
2294 3294 3.087031 TCCTCTTTACCGTCCAGTAGTG 58.913 50.000 0.00 0.00 0.00 2.74
2318 3318 3.118555 TCTCCGTCAAGTGAAGTTTTCCA 60.119 43.478 0.00 0.00 0.00 3.53
2398 3545 2.025418 GGTCAAGGCACCACGTACG 61.025 63.158 15.01 15.01 36.32 3.67
2399 3546 1.300388 GTCAAGGCACCACGTACGT 60.300 57.895 16.72 16.72 0.00 3.57
2400 3547 0.039256 GTCAAGGCACCACGTACGTA 60.039 55.000 22.34 0.00 0.00 3.57
2401 3548 0.039256 TCAAGGCACCACGTACGTAC 60.039 55.000 22.34 15.90 0.00 3.67
2410 3557 3.182972 CACCACGTACGTACCTTTCTTTG 59.817 47.826 22.34 4.35 0.00 2.77
2423 3574 0.843309 TTCTTTGGAGTGCCTGGACA 59.157 50.000 0.00 0.00 34.31 4.02
2424 3575 0.397941 TCTTTGGAGTGCCTGGACAG 59.602 55.000 0.00 0.00 34.31 3.51
2586 5245 2.625906 CACGTTCTGTGGTGCACG 59.374 61.111 11.45 0.00 45.21 5.34
2587 5246 3.269347 ACGTTCTGTGGTGCACGC 61.269 61.111 11.45 6.93 37.14 5.34
2588 5247 2.967076 CGTTCTGTGGTGCACGCT 60.967 61.111 11.45 0.00 37.14 5.07
2589 5248 1.663388 CGTTCTGTGGTGCACGCTA 60.663 57.895 11.45 0.00 37.14 4.26
2590 5249 1.860078 GTTCTGTGGTGCACGCTAC 59.140 57.895 11.45 10.40 37.14 3.58
2613 6104 2.140717 ACGTTCGTTCCATTTCACTCC 58.859 47.619 0.00 0.00 0.00 3.85
2699 6352 1.892209 TCCCTCCTTTTGCTTTCGAC 58.108 50.000 0.00 0.00 0.00 4.20
2871 7258 5.751243 ATTATTAATCTGTTGCACCGGTC 57.249 39.130 2.59 0.00 0.00 4.79
3683 8073 0.599204 CAACTTCGGTGCGTACCTGT 60.599 55.000 20.87 13.10 45.22 4.00
3709 8099 2.736081 CGCACGGTGGTATAGCTACAAA 60.736 50.000 10.60 0.00 0.00 2.83
3731 8121 0.951040 GACCGCTGACTGAACCTTGG 60.951 60.000 0.00 0.00 0.00 3.61
3732 8122 1.371183 CCGCTGACTGAACCTTGGA 59.629 57.895 0.00 0.00 0.00 3.53
3733 8123 0.671781 CCGCTGACTGAACCTTGGAG 60.672 60.000 0.00 0.00 0.00 3.86
3734 8124 0.318441 CGCTGACTGAACCTTGGAGA 59.682 55.000 0.00 0.00 0.00 3.71
3735 8125 1.066573 CGCTGACTGAACCTTGGAGAT 60.067 52.381 0.00 0.00 0.00 2.75
3736 8126 2.626840 GCTGACTGAACCTTGGAGATC 58.373 52.381 0.00 0.00 0.00 2.75
3738 8128 1.066858 TGACTGAACCTTGGAGATCGC 60.067 52.381 0.00 0.00 0.00 4.58
3744 8156 0.899720 ACCTTGGAGATCGCCGTAAA 59.100 50.000 11.16 0.00 0.00 2.01
3754 8166 2.979401 TCGCCGTAAAGTAACGTACA 57.021 45.000 0.00 0.00 41.27 2.90
3770 8182 2.035576 CGTACATGCTAGGGGTACTTCC 59.964 54.545 0.00 0.00 36.20 3.46
3791 8203 8.520351 ACTTCCCTAATGCAATAAAGTTGTAAC 58.480 33.333 0.00 0.00 0.00 2.50
3808 8220 2.174685 AACTGGGAAAGCCACCTTTT 57.825 45.000 0.00 0.00 41.22 2.27
3809 8221 2.174685 ACTGGGAAAGCCACCTTTTT 57.825 45.000 0.00 0.00 41.22 1.94
3832 8244 5.756950 TTTTAACGATAACACGAGAGCTG 57.243 39.130 0.00 0.00 37.03 4.24
3833 8245 4.430137 TTAACGATAACACGAGAGCTGT 57.570 40.909 0.00 0.00 37.03 4.40
3834 8246 3.299340 AACGATAACACGAGAGCTGTT 57.701 42.857 0.00 0.00 38.34 3.16
3835 8247 4.430137 AACGATAACACGAGAGCTGTTA 57.570 40.909 0.00 0.00 39.77 2.41
3836 8248 4.634184 ACGATAACACGAGAGCTGTTAT 57.366 40.909 7.74 7.74 43.83 1.89
3837 8249 5.746307 ACGATAACACGAGAGCTGTTATA 57.254 39.130 7.94 0.00 42.58 0.98
3838 8250 6.315091 ACGATAACACGAGAGCTGTTATAT 57.685 37.500 7.94 0.00 42.58 0.86
3839 8251 6.736123 ACGATAACACGAGAGCTGTTATATT 58.264 36.000 7.94 0.00 42.58 1.28
3840 8252 6.856938 ACGATAACACGAGAGCTGTTATATTC 59.143 38.462 7.94 0.00 42.58 1.75
3841 8253 6.856426 CGATAACACGAGAGCTGTTATATTCA 59.144 38.462 7.94 0.00 42.58 2.57
3842 8254 7.539022 CGATAACACGAGAGCTGTTATATTCAT 59.461 37.037 7.94 0.00 42.58 2.57
3843 8255 9.197694 GATAACACGAGAGCTGTTATATTCATT 57.802 33.333 7.94 0.00 42.58 2.57
3844 8256 6.834959 ACACGAGAGCTGTTATATTCATTG 57.165 37.500 0.00 0.00 0.00 2.82
3845 8257 6.573434 ACACGAGAGCTGTTATATTCATTGA 58.427 36.000 0.00 0.00 0.00 2.57
3846 8258 7.212976 ACACGAGAGCTGTTATATTCATTGAT 58.787 34.615 0.00 0.00 0.00 2.57
3847 8259 7.170489 ACACGAGAGCTGTTATATTCATTGATG 59.830 37.037 0.00 0.00 0.00 3.07
3848 8260 7.383300 CACGAGAGCTGTTATATTCATTGATGA 59.617 37.037 0.00 0.00 34.44 2.92
3849 8261 7.598118 ACGAGAGCTGTTATATTCATTGATGAG 59.402 37.037 0.00 0.00 38.19 2.90
3850 8262 7.811713 CGAGAGCTGTTATATTCATTGATGAGA 59.188 37.037 0.00 0.00 38.19 3.27
3851 8263 9.486497 GAGAGCTGTTATATTCATTGATGAGAA 57.514 33.333 0.00 0.00 38.19 2.87
3852 8264 9.491675 AGAGCTGTTATATTCATTGATGAGAAG 57.508 33.333 0.00 0.00 38.19 2.85
3853 8265 9.486497 GAGCTGTTATATTCATTGATGAGAAGA 57.514 33.333 0.00 0.00 38.19 2.87
3854 8266 9.842775 AGCTGTTATATTCATTGATGAGAAGAA 57.157 29.630 0.00 0.00 38.19 2.52
3860 8272 6.900568 ATTCATTGATGAGAAGAAGACGAC 57.099 37.500 0.00 0.00 38.19 4.34
3861 8273 5.391312 TCATTGATGAGAAGAAGACGACA 57.609 39.130 0.00 0.00 32.11 4.35
3862 8274 5.164233 TCATTGATGAGAAGAAGACGACAC 58.836 41.667 0.00 0.00 32.11 3.67
3863 8275 3.203161 TGATGAGAAGAAGACGACACG 57.797 47.619 0.00 0.00 0.00 4.49
3864 8276 2.812011 TGATGAGAAGAAGACGACACGA 59.188 45.455 0.00 0.00 0.00 4.35
3865 8277 2.971430 TGAGAAGAAGACGACACGAG 57.029 50.000 0.00 0.00 0.00 4.18
3866 8278 1.535896 TGAGAAGAAGACGACACGAGG 59.464 52.381 0.00 0.00 0.00 4.63
3867 8279 1.805345 GAGAAGAAGACGACACGAGGA 59.195 52.381 0.00 0.00 0.00 3.71
3868 8280 1.536331 AGAAGAAGACGACACGAGGAC 59.464 52.381 0.00 0.00 0.00 3.85
3869 8281 0.597072 AAGAAGACGACACGAGGACC 59.403 55.000 0.00 0.00 0.00 4.46
3870 8282 1.212229 GAAGACGACACGAGGACCC 59.788 63.158 0.00 0.00 0.00 4.46
3871 8283 2.524636 GAAGACGACACGAGGACCCG 62.525 65.000 0.00 1.36 0.00 5.28
3872 8284 3.052082 GACGACACGAGGACCCGA 61.052 66.667 9.04 0.00 0.00 5.14
3873 8285 2.595463 ACGACACGAGGACCCGAA 60.595 61.111 9.04 0.00 0.00 4.30
3874 8286 2.126580 CGACACGAGGACCCGAAC 60.127 66.667 9.04 0.78 0.00 3.95
3875 8287 2.623915 CGACACGAGGACCCGAACT 61.624 63.158 9.04 0.00 0.00 3.01
3876 8288 1.080705 GACACGAGGACCCGAACTG 60.081 63.158 9.04 0.96 0.00 3.16
3877 8289 2.432628 CACGAGGACCCGAACTGC 60.433 66.667 9.04 0.00 0.00 4.40
3878 8290 2.600769 ACGAGGACCCGAACTGCT 60.601 61.111 9.04 0.00 0.00 4.24
3879 8291 2.182030 CGAGGACCCGAACTGCTC 59.818 66.667 0.00 0.00 0.00 4.26
3892 8304 4.893795 CGAACTGCTCGGTTTATTAAAGG 58.106 43.478 0.00 0.00 44.20 3.11
3893 8305 4.628333 CGAACTGCTCGGTTTATTAAAGGA 59.372 41.667 0.00 0.00 44.20 3.36
3894 8306 5.121142 CGAACTGCTCGGTTTATTAAAGGAA 59.879 40.000 0.00 0.00 44.20 3.36
3895 8307 6.347888 CGAACTGCTCGGTTTATTAAAGGAAA 60.348 38.462 0.00 0.00 44.20 3.13
3896 8308 6.887626 ACTGCTCGGTTTATTAAAGGAAAA 57.112 33.333 0.00 0.00 0.00 2.29
3897 8309 6.675026 ACTGCTCGGTTTATTAAAGGAAAAC 58.325 36.000 0.00 0.00 33.37 2.43
3898 8310 6.016213 TGCTCGGTTTATTAAAGGAAAACC 57.984 37.500 6.20 6.20 45.64 3.27
3902 8314 4.497300 GGTTTATTAAAGGAAAACCGGGC 58.503 43.478 6.32 0.00 41.84 6.13
3903 8315 4.168014 GTTTATTAAAGGAAAACCGGGCG 58.832 43.478 6.32 0.00 0.00 6.13
3904 8316 2.203470 ATTAAAGGAAAACCGGGCGA 57.797 45.000 6.32 0.00 0.00 5.54
3905 8317 1.978454 TTAAAGGAAAACCGGGCGAA 58.022 45.000 6.32 0.00 0.00 4.70
3906 8318 1.978454 TAAAGGAAAACCGGGCGAAA 58.022 45.000 6.32 0.00 0.00 3.46
3907 8319 1.112950 AAAGGAAAACCGGGCGAAAA 58.887 45.000 6.32 0.00 0.00 2.29
3908 8320 0.386476 AAGGAAAACCGGGCGAAAAC 59.614 50.000 6.32 0.00 0.00 2.43
3909 8321 1.007038 GGAAAACCGGGCGAAAACC 60.007 57.895 6.32 0.00 0.00 3.27
3910 8322 1.457823 GGAAAACCGGGCGAAAACCT 61.458 55.000 6.32 0.00 0.00 3.50
3911 8323 0.318360 GAAAACCGGGCGAAAACCTG 60.318 55.000 6.32 0.00 35.68 4.00
3912 8324 0.752376 AAAACCGGGCGAAAACCTGA 60.752 50.000 6.32 0.00 38.48 3.86
3913 8325 0.752376 AAACCGGGCGAAAACCTGAA 60.752 50.000 6.32 0.00 38.48 3.02
3914 8326 1.449726 AACCGGGCGAAAACCTGAAC 61.450 55.000 6.32 0.00 38.48 3.18
3915 8327 1.894756 CCGGGCGAAAACCTGAACA 60.895 57.895 0.00 0.00 38.48 3.18
3916 8328 1.448922 CCGGGCGAAAACCTGAACAA 61.449 55.000 0.00 0.00 38.48 2.83
3917 8329 0.317519 CGGGCGAAAACCTGAACAAC 60.318 55.000 0.00 0.00 38.48 3.32
3918 8330 0.317519 GGGCGAAAACCTGAACAACG 60.318 55.000 0.00 0.00 0.00 4.10
3919 8331 0.317519 GGCGAAAACCTGAACAACGG 60.318 55.000 0.00 0.00 0.00 4.44
3920 8332 0.933047 GCGAAAACCTGAACAACGGC 60.933 55.000 0.00 0.00 0.00 5.68
3921 8333 0.378962 CGAAAACCTGAACAACGGCA 59.621 50.000 0.00 0.00 0.00 5.69
3922 8334 1.202200 CGAAAACCTGAACAACGGCAA 60.202 47.619 0.00 0.00 0.00 4.52
3923 8335 2.459934 GAAAACCTGAACAACGGCAAG 58.540 47.619 0.00 0.00 0.00 4.01
3924 8336 1.470051 AAACCTGAACAACGGCAAGT 58.530 45.000 0.00 0.00 0.00 3.16
3925 8337 1.021968 AACCTGAACAACGGCAAGTC 58.978 50.000 0.00 0.00 0.00 3.01
3926 8338 0.107410 ACCTGAACAACGGCAAGTCA 60.107 50.000 0.00 0.00 0.00 3.41
3927 8339 0.588252 CCTGAACAACGGCAAGTCAG 59.412 55.000 0.00 0.00 0.00 3.51
3928 8340 1.581934 CTGAACAACGGCAAGTCAGA 58.418 50.000 0.00 0.00 0.00 3.27
3929 8341 2.146342 CTGAACAACGGCAAGTCAGAT 58.854 47.619 0.00 0.00 0.00 2.90
3930 8342 2.143122 TGAACAACGGCAAGTCAGATC 58.857 47.619 0.00 0.00 0.00 2.75
3931 8343 2.224281 TGAACAACGGCAAGTCAGATCT 60.224 45.455 0.00 0.00 0.00 2.75
3932 8344 3.006430 TGAACAACGGCAAGTCAGATCTA 59.994 43.478 0.00 0.00 0.00 1.98
3933 8345 3.678056 ACAACGGCAAGTCAGATCTAA 57.322 42.857 0.00 0.00 0.00 2.10
3934 8346 4.207891 ACAACGGCAAGTCAGATCTAAT 57.792 40.909 0.00 0.00 0.00 1.73
3935 8347 5.339008 ACAACGGCAAGTCAGATCTAATA 57.661 39.130 0.00 0.00 0.00 0.98
3936 8348 5.730550 ACAACGGCAAGTCAGATCTAATAA 58.269 37.500 0.00 0.00 0.00 1.40
3937 8349 5.581085 ACAACGGCAAGTCAGATCTAATAAC 59.419 40.000 0.00 0.00 0.00 1.89
3938 8350 4.694339 ACGGCAAGTCAGATCTAATAACC 58.306 43.478 0.00 0.00 0.00 2.85
3939 8351 4.406003 ACGGCAAGTCAGATCTAATAACCT 59.594 41.667 0.00 0.00 0.00 3.50
3940 8352 5.597182 ACGGCAAGTCAGATCTAATAACCTA 59.403 40.000 0.00 0.00 0.00 3.08
3941 8353 6.153067 CGGCAAGTCAGATCTAATAACCTAG 58.847 44.000 0.00 0.00 0.00 3.02
3942 8354 6.459923 GGCAAGTCAGATCTAATAACCTAGG 58.540 44.000 7.41 7.41 0.00 3.02
3943 8355 5.929415 GCAAGTCAGATCTAATAACCTAGGC 59.071 44.000 9.30 0.00 0.00 3.93
3944 8356 6.459923 CAAGTCAGATCTAATAACCTAGGCC 58.540 44.000 9.30 0.00 0.00 5.19
3945 8357 5.971493 AGTCAGATCTAATAACCTAGGCCT 58.029 41.667 11.78 11.78 0.00 5.19
3946 8358 7.104974 AGTCAGATCTAATAACCTAGGCCTA 57.895 40.000 13.09 13.09 0.00 3.93
3947 8359 7.536625 AGTCAGATCTAATAACCTAGGCCTAA 58.463 38.462 14.85 0.00 0.00 2.69
3948 8360 8.011290 AGTCAGATCTAATAACCTAGGCCTAAA 58.989 37.037 14.85 0.00 0.00 1.85
3949 8361 8.648693 GTCAGATCTAATAACCTAGGCCTAAAA 58.351 37.037 14.85 0.00 0.00 1.52
3950 8362 8.648693 TCAGATCTAATAACCTAGGCCTAAAAC 58.351 37.037 14.85 0.00 0.00 2.43
3951 8363 8.429641 CAGATCTAATAACCTAGGCCTAAAACA 58.570 37.037 14.85 0.00 0.00 2.83
3952 8364 8.430431 AGATCTAATAACCTAGGCCTAAAACAC 58.570 37.037 14.85 0.00 0.00 3.32
3953 8365 6.892485 TCTAATAACCTAGGCCTAAAACACC 58.108 40.000 14.85 0.00 0.00 4.16
3954 8366 5.523883 AATAACCTAGGCCTAAAACACCA 57.476 39.130 14.85 0.00 0.00 4.17
3961 8373 6.126409 CCTAGGCCTAAAACACCATAATTGA 58.874 40.000 14.85 0.00 0.00 2.57
4010 8422 4.657824 ACGAAGGTGGCCACGTCG 62.658 66.667 38.49 38.49 41.93 5.12
4057 8472 0.963355 GCCACCGCCTGTAAATTCCA 60.963 55.000 0.00 0.00 0.00 3.53
4089 8504 5.263185 CGAGGGCATTTTAGTAATTTCACG 58.737 41.667 0.00 0.00 0.00 4.35
4093 8508 6.655848 AGGGCATTTTAGTAATTTCACGTACA 59.344 34.615 0.00 0.00 0.00 2.90
4095 8510 6.964934 GGCATTTTAGTAATTTCACGTACAGG 59.035 38.462 0.00 0.00 0.00 4.00
4097 8512 7.480542 GCATTTTAGTAATTTCACGTACAGGTG 59.519 37.037 0.00 0.00 39.29 4.00
4106 8521 7.966246 ATTTCACGTACAGGTGTATAAAACA 57.034 32.000 0.00 0.00 39.00 2.83
4220 8638 2.418910 CCATCACCCTCTCGCTCGT 61.419 63.158 0.00 0.00 0.00 4.18
4223 8641 4.838486 CACCCTCTCGCTCGTCGC 62.838 72.222 0.00 0.00 38.27 5.19
4371 8790 3.418047 TCCTCGTTTCCTCCAAATTTCC 58.582 45.455 0.00 0.00 0.00 3.13
4372 8791 3.073946 TCCTCGTTTCCTCCAAATTTCCT 59.926 43.478 0.00 0.00 0.00 3.36
4569 9006 4.620723 TCTCTCTCTCTCTCTCAGGTACT 58.379 47.826 0.00 0.00 43.88 2.73
4588 9025 4.559229 TCTCCTGCATCTCGCGCG 62.559 66.667 26.76 26.76 46.97 6.86
4696 9133 4.341783 GTGCAGGAGCCTGGCAGT 62.342 66.667 22.65 0.00 43.77 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.461327 CCCCTACACCCTCTATAAACAGTA 58.539 45.833 0.00 0.00 0.00 2.74
2 3 4.296056 CCCCTACACCCTCTATAAACAGT 58.704 47.826 0.00 0.00 0.00 3.55
3 4 3.071167 GCCCCTACACCCTCTATAAACAG 59.929 52.174 0.00 0.00 0.00 3.16
4 5 3.043418 GCCCCTACACCCTCTATAAACA 58.957 50.000 0.00 0.00 0.00 2.83
5 6 2.036862 CGCCCCTACACCCTCTATAAAC 59.963 54.545 0.00 0.00 0.00 2.01
6 7 2.091166 TCGCCCCTACACCCTCTATAAA 60.091 50.000 0.00 0.00 0.00 1.40
7 8 1.500303 TCGCCCCTACACCCTCTATAA 59.500 52.381 0.00 0.00 0.00 0.98
8 9 1.151760 TCGCCCCTACACCCTCTATA 58.848 55.000 0.00 0.00 0.00 1.31
9 10 0.263765 TTCGCCCCTACACCCTCTAT 59.736 55.000 0.00 0.00 0.00 1.98
10 11 0.263765 ATTCGCCCCTACACCCTCTA 59.736 55.000 0.00 0.00 0.00 2.43
11 12 1.003051 ATTCGCCCCTACACCCTCT 59.997 57.895 0.00 0.00 0.00 3.69
12 13 1.446366 GATTCGCCCCTACACCCTC 59.554 63.158 0.00 0.00 0.00 4.30
13 14 2.070650 GGATTCGCCCCTACACCCT 61.071 63.158 0.00 0.00 0.00 4.34
14 15 2.070650 AGGATTCGCCCCTACACCC 61.071 63.158 0.00 0.00 37.37 4.61
15 16 1.146263 CAGGATTCGCCCCTACACC 59.854 63.158 0.00 0.00 37.37 4.16
16 17 0.252197 AACAGGATTCGCCCCTACAC 59.748 55.000 0.00 0.00 37.37 2.90
17 18 0.251916 CAACAGGATTCGCCCCTACA 59.748 55.000 0.00 0.00 37.37 2.74
18 19 0.252197 ACAACAGGATTCGCCCCTAC 59.748 55.000 0.00 0.00 37.37 3.18
19 20 0.988832 AACAACAGGATTCGCCCCTA 59.011 50.000 0.00 0.00 37.37 3.53
20 21 0.322546 GAACAACAGGATTCGCCCCT 60.323 55.000 0.00 0.00 37.37 4.79
21 22 0.322546 AGAACAACAGGATTCGCCCC 60.323 55.000 0.00 0.00 37.37 5.80
22 23 1.534729 AAGAACAACAGGATTCGCCC 58.465 50.000 0.00 0.00 37.37 6.13
23 24 2.922335 GCAAAGAACAACAGGATTCGCC 60.922 50.000 0.00 0.00 0.00 5.54
24 25 2.319472 GCAAAGAACAACAGGATTCGC 58.681 47.619 0.00 0.00 0.00 4.70
25 26 2.293122 TGGCAAAGAACAACAGGATTCG 59.707 45.455 0.00 0.00 0.00 3.34
26 27 3.068024 TGTGGCAAAGAACAACAGGATTC 59.932 43.478 0.00 0.00 0.00 2.52
27 28 3.030291 TGTGGCAAAGAACAACAGGATT 58.970 40.909 0.00 0.00 0.00 3.01
28 29 2.665165 TGTGGCAAAGAACAACAGGAT 58.335 42.857 0.00 0.00 0.00 3.24
29 30 2.136298 TGTGGCAAAGAACAACAGGA 57.864 45.000 0.00 0.00 0.00 3.86
30 31 3.457610 AATGTGGCAAAGAACAACAGG 57.542 42.857 0.00 0.00 0.00 4.00
31 32 5.799681 AAAAATGTGGCAAAGAACAACAG 57.200 34.783 0.00 0.00 0.00 3.16
52 53 4.869861 GCCAACTTCTGCAAAGAAGAAAAA 59.130 37.500 19.42 0.00 45.93 1.94
53 54 4.081752 TGCCAACTTCTGCAAAGAAGAAAA 60.082 37.500 19.42 1.64 45.93 2.29
54 55 3.446873 TGCCAACTTCTGCAAAGAAGAAA 59.553 39.130 19.42 1.35 45.93 2.52
55 56 3.023119 TGCCAACTTCTGCAAAGAAGAA 58.977 40.909 19.42 4.19 45.93 2.52
56 57 2.653726 TGCCAACTTCTGCAAAGAAGA 58.346 42.857 19.42 0.00 45.93 2.87
58 59 2.546373 GCATGCCAACTTCTGCAAAGAA 60.546 45.455 6.36 2.51 41.50 2.52
59 60 1.000060 GCATGCCAACTTCTGCAAAGA 60.000 47.619 6.36 0.00 41.50 2.52
60 61 1.425412 GCATGCCAACTTCTGCAAAG 58.575 50.000 6.36 6.98 41.50 2.77
61 62 0.318869 CGCATGCCAACTTCTGCAAA 60.319 50.000 13.15 0.00 41.50 3.68
62 63 1.286570 CGCATGCCAACTTCTGCAA 59.713 52.632 13.15 0.00 41.50 4.08
63 64 1.454572 AACGCATGCCAACTTCTGCA 61.455 50.000 13.15 0.00 42.52 4.41
64 65 0.318955 AAACGCATGCCAACTTCTGC 60.319 50.000 13.15 0.00 0.00 4.26
65 66 1.267806 AGAAACGCATGCCAACTTCTG 59.732 47.619 13.15 0.00 0.00 3.02
66 67 1.267806 CAGAAACGCATGCCAACTTCT 59.732 47.619 13.15 11.63 0.00 2.85
67 68 1.266718 TCAGAAACGCATGCCAACTTC 59.733 47.619 13.15 9.55 0.00 3.01
68 69 1.317613 TCAGAAACGCATGCCAACTT 58.682 45.000 13.15 0.00 0.00 2.66
69 70 1.317613 TTCAGAAACGCATGCCAACT 58.682 45.000 13.15 3.83 0.00 3.16
70 71 1.786579 GTTTCAGAAACGCATGCCAAC 59.213 47.619 13.15 1.35 0.00 3.77
71 72 1.680735 AGTTTCAGAAACGCATGCCAA 59.319 42.857 18.43 0.00 45.88 4.52
72 73 1.001487 CAGTTTCAGAAACGCATGCCA 60.001 47.619 18.43 0.00 45.88 4.92
73 74 1.001378 ACAGTTTCAGAAACGCATGCC 60.001 47.619 18.43 0.00 45.88 4.40
74 75 2.046313 CACAGTTTCAGAAACGCATGC 58.954 47.619 18.43 7.91 45.88 4.06
75 76 3.607422 TCACAGTTTCAGAAACGCATG 57.393 42.857 18.43 16.87 45.88 4.06
76 77 3.243068 GGTTCACAGTTTCAGAAACGCAT 60.243 43.478 18.43 7.06 45.88 4.73
77 78 2.096819 GGTTCACAGTTTCAGAAACGCA 59.903 45.455 18.43 3.39 45.88 5.24
78 79 2.540973 GGGTTCACAGTTTCAGAAACGC 60.541 50.000 18.43 7.49 45.88 4.84
79 80 2.032924 GGGGTTCACAGTTTCAGAAACG 59.967 50.000 18.43 15.48 45.88 3.60
80 81 2.032924 CGGGGTTCACAGTTTCAGAAAC 59.967 50.000 17.11 17.11 41.69 2.78
81 82 2.294074 CGGGGTTCACAGTTTCAGAAA 58.706 47.619 0.00 0.00 0.00 2.52
82 83 1.210967 ACGGGGTTCACAGTTTCAGAA 59.789 47.619 0.00 0.00 0.00 3.02
83 84 0.834612 ACGGGGTTCACAGTTTCAGA 59.165 50.000 0.00 0.00 0.00 3.27
84 85 0.944386 CACGGGGTTCACAGTTTCAG 59.056 55.000 0.00 0.00 0.00 3.02
85 86 1.098712 GCACGGGGTTCACAGTTTCA 61.099 55.000 0.00 0.00 0.00 2.69
92 93 0.533308 TAGTGTTGCACGGGGTTCAC 60.533 55.000 0.00 0.00 39.64 3.18
103 104 3.923017 AGATGGCAAGTTTAGTGTTGC 57.077 42.857 0.00 0.00 46.88 4.17
119 120 1.250476 GCACTTGCGCGTTTTAGATG 58.750 50.000 8.43 0.00 0.00 2.90
135 138 2.352323 CGTTTATTGGAGGGTTTGGCAC 60.352 50.000 0.00 0.00 0.00 5.01
152 155 3.118519 ACCCTAATATCTGGCGAACGTTT 60.119 43.478 0.46 0.00 0.00 3.60
272 277 1.905637 TTGTCTCAGCCGACTACTCA 58.094 50.000 0.00 0.00 35.00 3.41
282 287 1.538047 TGGAATGCCTTTGTCTCAGC 58.462 50.000 0.00 0.00 34.31 4.26
342 347 4.806342 ACACGTAACAGTCAAATTGGAC 57.194 40.909 4.66 4.66 38.08 4.02
343 348 6.282167 TCTTACACGTAACAGTCAAATTGGA 58.718 36.000 0.00 0.00 0.00 3.53
347 352 5.121768 GGCATCTTACACGTAACAGTCAAAT 59.878 40.000 0.00 0.00 0.00 2.32
352 357 3.671008 TGGCATCTTACACGTAACAGT 57.329 42.857 0.00 0.00 0.00 3.55
421 426 3.275143 CGTGTATAAGGGTGCCAATTGA 58.725 45.455 7.12 0.00 0.00 2.57
439 444 3.554324 CGGGATAGGTTTACAATGACGTG 59.446 47.826 0.00 0.00 0.00 4.49
499 552 6.636454 ACCTCCTTAACTGTTTGATATGGA 57.364 37.500 0.00 0.00 0.00 3.41
535 588 0.886563 CCGACCAACTCCGTTAGTCT 59.113 55.000 4.37 0.00 37.50 3.24
574 627 2.788786 CGGTCACACAACTTGCATTTTC 59.211 45.455 0.00 0.00 0.00 2.29
657 717 2.355756 CGTCATGAGTAAATGGCCTTGG 59.644 50.000 3.32 0.00 0.00 3.61
707 767 3.963428 CCGGCTGGCTAGAGTAATAAT 57.037 47.619 0.00 0.00 0.00 1.28
725 785 2.372264 TGGTACAGTCTAACTAGGCCG 58.628 52.381 0.00 0.00 0.00 6.13
738 798 7.388712 CAAAGACGTCGTATATTTTGGTACAG 58.611 38.462 10.46 0.00 42.39 2.74
792 864 5.533903 TGTACTCCCTCTGTACCGAAATATC 59.466 44.000 0.00 0.00 39.42 1.63
805 877 3.643792 GGCATCTTACATGTACTCCCTCT 59.356 47.826 4.68 0.00 0.00 3.69
888 960 4.992951 GGTTTACACTGGCGTATATAAGGG 59.007 45.833 0.00 0.00 0.00 3.95
903 978 1.208776 ACAGCGGGGATAGGTTTACAC 59.791 52.381 0.00 0.00 0.00 2.90
905 980 1.537562 CGACAGCGGGGATAGGTTTAC 60.538 57.143 0.00 0.00 0.00 2.01
910 985 1.254026 TAATCGACAGCGGGGATAGG 58.746 55.000 0.00 0.00 38.28 2.57
911 986 3.254060 CAATAATCGACAGCGGGGATAG 58.746 50.000 0.00 0.00 38.28 2.08
912 987 2.631062 ACAATAATCGACAGCGGGGATA 59.369 45.455 0.00 0.00 38.28 2.59
914 989 0.828022 ACAATAATCGACAGCGGGGA 59.172 50.000 0.00 0.00 38.28 4.81
918 996 3.000322 GGACTGAACAATAATCGACAGCG 60.000 47.826 0.00 0.00 39.35 5.18
925 1003 5.067805 GTGGAATGGGGACTGAACAATAATC 59.932 44.000 0.00 0.00 0.00 1.75
938 1016 1.303898 TGCTAATGGTGGAATGGGGA 58.696 50.000 0.00 0.00 0.00 4.81
1062 1167 2.074547 TGCAGCTACACCTTACGTTC 57.925 50.000 0.00 0.00 0.00 3.95
1072 1177 1.608025 CGACCTTCCTTTGCAGCTACA 60.608 52.381 0.00 0.00 0.00 2.74
1082 1187 1.874562 CTCGTCGACGACCTTCCTT 59.125 57.895 34.97 0.00 44.22 3.36
1100 1205 1.524165 CCTCTGCCTGCTGATCTGC 60.524 63.158 16.98 16.98 0.00 4.26
1108 1213 0.519077 CGACTTTTTCCTCTGCCTGC 59.481 55.000 0.00 0.00 0.00 4.85
1352 1496 1.606531 GAGAAGAGTGCAGCCCCAT 59.393 57.895 0.00 0.00 0.00 4.00
1362 1506 0.810016 GCGTTACCGAGGAGAAGAGT 59.190 55.000 0.00 0.00 35.63 3.24
1435 1632 4.094848 GTTAATTAACAGGCCCACCGGC 62.095 54.545 20.95 0.00 43.97 6.13
1436 1633 1.746787 GTTAATTAACAGGCCCACCGG 59.253 52.381 20.95 0.00 42.76 5.28
1437 1634 1.399089 CGTTAATTAACAGGCCCACCG 59.601 52.381 24.27 6.86 42.76 4.94
1745 2171 1.743995 GCCCCGCGTAGAACAACAT 60.744 57.895 4.92 0.00 0.00 2.71
2294 3294 2.528041 AACTTCACTTGACGGAGACC 57.472 50.000 0.00 0.00 0.00 3.85
2318 3318 8.384607 AGAATTTCTACGCTTCTTCTTTTCTT 57.615 30.769 0.00 0.00 0.00 2.52
2345 3475 1.068748 GCATGGCTCAATCATAAGCGG 60.069 52.381 0.00 0.00 39.47 5.52
2398 3545 2.814336 CAGGCACTCCAAAGAAAGGTAC 59.186 50.000 0.00 0.00 34.60 3.34
2399 3546 2.224769 CCAGGCACTCCAAAGAAAGGTA 60.225 50.000 0.00 0.00 34.60 3.08
2400 3547 1.479389 CCAGGCACTCCAAAGAAAGGT 60.479 52.381 0.00 0.00 34.60 3.50
2401 3548 1.202927 TCCAGGCACTCCAAAGAAAGG 60.203 52.381 0.00 0.00 34.60 3.11
2423 3574 2.952978 CAGATTAGCTACGTCTGGTCCT 59.047 50.000 20.32 0.00 36.57 3.85
2424 3575 2.688958 ACAGATTAGCTACGTCTGGTCC 59.311 50.000 26.85 0.00 42.75 4.46
2425 3576 4.815308 TCTACAGATTAGCTACGTCTGGTC 59.185 45.833 26.85 6.81 42.75 4.02
2427 3578 5.239744 ACATCTACAGATTAGCTACGTCTGG 59.760 44.000 26.85 16.51 42.75 3.86
2585 5244 0.452618 TGGAACGAACGTACGTAGCG 60.453 55.000 29.81 29.81 45.83 4.26
2586 5245 1.900237 ATGGAACGAACGTACGTAGC 58.100 50.000 23.12 15.60 45.83 3.58
2587 5246 3.913763 TGAAATGGAACGAACGTACGTAG 59.086 43.478 23.12 20.29 45.83 3.51
2588 5247 3.668191 GTGAAATGGAACGAACGTACGTA 59.332 43.478 23.12 4.01 45.83 3.57
2590 5249 2.727798 AGTGAAATGGAACGAACGTACG 59.272 45.455 15.01 15.01 39.31 3.67
2613 6104 9.760660 CTTTTCTTTCCAGTACAATTATCTTCG 57.239 33.333 0.00 0.00 0.00 3.79
2699 6352 0.527817 GCGTCCTGATAGAACCACGG 60.528 60.000 0.00 0.00 0.00 4.94
2871 7258 2.126071 ATCGACAGCAACCGACCG 60.126 61.111 0.00 0.00 37.64 4.79
3421 7811 0.708370 CGATGAACGTGAACACCTCG 59.292 55.000 0.00 0.00 37.22 4.63
3601 7991 2.442188 GCCGTCGTTGATGTCGTCC 61.442 63.158 0.00 0.00 0.00 4.79
3683 8073 0.099259 CTATACCACCGTGCGACGAA 59.901 55.000 0.00 0.00 46.05 3.85
3709 8099 0.759346 AGGTTCAGTCAGCGGTCTTT 59.241 50.000 0.00 0.00 0.00 2.52
3731 8121 2.790387 ACGTTACTTTACGGCGATCTC 58.210 47.619 16.62 0.00 45.44 2.75
3732 8122 2.927553 ACGTTACTTTACGGCGATCT 57.072 45.000 16.62 0.00 45.44 2.75
3733 8123 3.425404 TGTACGTTACTTTACGGCGATC 58.575 45.455 16.62 0.00 45.44 3.69
3734 8124 3.485947 TGTACGTTACTTTACGGCGAT 57.514 42.857 16.62 0.00 45.44 4.58
3735 8125 2.979401 TGTACGTTACTTTACGGCGA 57.021 45.000 16.62 0.00 45.44 5.54
3736 8126 2.284627 GCATGTACGTTACTTTACGGCG 60.285 50.000 4.80 4.80 45.44 6.46
3738 8128 4.736793 CCTAGCATGTACGTTACTTTACGG 59.263 45.833 0.00 0.00 45.44 4.02
3744 8156 2.743553 ACCCCTAGCATGTACGTTACT 58.256 47.619 0.00 0.00 0.00 2.24
3770 8182 7.122055 TCCCAGTTACAACTTTATTGCATTAGG 59.878 37.037 0.00 0.00 37.08 2.69
3809 8221 5.693104 ACAGCTCTCGTGTTATCGTTAAAAA 59.307 36.000 0.00 0.00 0.00 1.94
3810 8222 5.224888 ACAGCTCTCGTGTTATCGTTAAAA 58.775 37.500 0.00 0.00 0.00 1.52
3811 8223 4.801891 ACAGCTCTCGTGTTATCGTTAAA 58.198 39.130 0.00 0.00 0.00 1.52
3812 8224 4.430137 ACAGCTCTCGTGTTATCGTTAA 57.570 40.909 0.00 0.00 0.00 2.01
3813 8225 4.430137 AACAGCTCTCGTGTTATCGTTA 57.570 40.909 0.00 0.00 36.35 3.18
3814 8226 3.299340 AACAGCTCTCGTGTTATCGTT 57.701 42.857 0.00 0.00 36.35 3.85
3815 8227 4.634184 ATAACAGCTCTCGTGTTATCGT 57.366 40.909 3.20 0.00 44.27 3.73
3816 8228 6.856426 TGAATATAACAGCTCTCGTGTTATCG 59.144 38.462 10.55 0.00 44.27 2.92
3817 8229 8.749841 ATGAATATAACAGCTCTCGTGTTATC 57.250 34.615 10.55 1.40 44.27 1.75
3819 8231 8.194769 TCAATGAATATAACAGCTCTCGTGTTA 58.805 33.333 0.00 0.00 42.92 2.41
3820 8232 7.041721 TCAATGAATATAACAGCTCTCGTGTT 58.958 34.615 0.00 0.00 41.11 3.32
3821 8233 6.573434 TCAATGAATATAACAGCTCTCGTGT 58.427 36.000 0.00 0.00 0.00 4.49
3822 8234 7.383300 TCATCAATGAATATAACAGCTCTCGTG 59.617 37.037 0.00 0.00 33.08 4.35
3823 8235 7.436933 TCATCAATGAATATAACAGCTCTCGT 58.563 34.615 0.00 0.00 33.08 4.18
3824 8236 7.811713 TCTCATCAATGAATATAACAGCTCTCG 59.188 37.037 0.00 0.00 36.18 4.04
3825 8237 9.486497 TTCTCATCAATGAATATAACAGCTCTC 57.514 33.333 0.00 0.00 36.18 3.20
3826 8238 9.491675 CTTCTCATCAATGAATATAACAGCTCT 57.508 33.333 0.00 0.00 36.18 4.09
3827 8239 9.486497 TCTTCTCATCAATGAATATAACAGCTC 57.514 33.333 0.00 0.00 36.18 4.09
3828 8240 9.842775 TTCTTCTCATCAATGAATATAACAGCT 57.157 29.630 0.00 0.00 36.18 4.24
3834 8246 9.684448 GTCGTCTTCTTCTCATCAATGAATATA 57.316 33.333 0.00 0.00 36.18 0.86
3835 8247 8.200120 TGTCGTCTTCTTCTCATCAATGAATAT 58.800 33.333 0.00 0.00 36.18 1.28
3836 8248 7.489435 GTGTCGTCTTCTTCTCATCAATGAATA 59.511 37.037 0.00 0.00 36.18 1.75
3837 8249 6.312426 GTGTCGTCTTCTTCTCATCAATGAAT 59.688 38.462 0.00 0.00 36.18 2.57
3838 8250 5.635280 GTGTCGTCTTCTTCTCATCAATGAA 59.365 40.000 0.00 0.00 36.18 2.57
3839 8251 5.164233 GTGTCGTCTTCTTCTCATCAATGA 58.836 41.667 0.00 0.00 35.16 2.57
3840 8252 4.031089 CGTGTCGTCTTCTTCTCATCAATG 59.969 45.833 0.00 0.00 0.00 2.82
3841 8253 4.082733 TCGTGTCGTCTTCTTCTCATCAAT 60.083 41.667 0.00 0.00 0.00 2.57
3842 8254 3.252458 TCGTGTCGTCTTCTTCTCATCAA 59.748 43.478 0.00 0.00 0.00 2.57
3843 8255 2.812011 TCGTGTCGTCTTCTTCTCATCA 59.188 45.455 0.00 0.00 0.00 3.07
3844 8256 3.421741 CTCGTGTCGTCTTCTTCTCATC 58.578 50.000 0.00 0.00 0.00 2.92
3845 8257 2.162608 CCTCGTGTCGTCTTCTTCTCAT 59.837 50.000 0.00 0.00 0.00 2.90
3846 8258 1.535896 CCTCGTGTCGTCTTCTTCTCA 59.464 52.381 0.00 0.00 0.00 3.27
3847 8259 1.805345 TCCTCGTGTCGTCTTCTTCTC 59.195 52.381 0.00 0.00 0.00 2.87
3848 8260 1.536331 GTCCTCGTGTCGTCTTCTTCT 59.464 52.381 0.00 0.00 0.00 2.85
3849 8261 1.401278 GGTCCTCGTGTCGTCTTCTTC 60.401 57.143 0.00 0.00 0.00 2.87
3850 8262 0.597072 GGTCCTCGTGTCGTCTTCTT 59.403 55.000 0.00 0.00 0.00 2.52
3851 8263 1.242665 GGGTCCTCGTGTCGTCTTCT 61.243 60.000 0.00 0.00 0.00 2.85
3852 8264 1.212229 GGGTCCTCGTGTCGTCTTC 59.788 63.158 0.00 0.00 0.00 2.87
3853 8265 2.623915 CGGGTCCTCGTGTCGTCTT 61.624 63.158 0.00 0.00 0.00 3.01
3854 8266 3.054503 CGGGTCCTCGTGTCGTCT 61.055 66.667 0.00 0.00 0.00 4.18
3855 8267 2.620112 TTCGGGTCCTCGTGTCGTC 61.620 63.158 0.00 0.00 0.00 4.20
3856 8268 2.595463 TTCGGGTCCTCGTGTCGT 60.595 61.111 0.00 0.00 0.00 4.34
3857 8269 2.126580 GTTCGGGTCCTCGTGTCG 60.127 66.667 0.00 0.00 0.00 4.35
3858 8270 1.080705 CAGTTCGGGTCCTCGTGTC 60.081 63.158 0.00 0.00 0.00 3.67
3859 8271 3.048602 CAGTTCGGGTCCTCGTGT 58.951 61.111 0.00 0.00 0.00 4.49
3860 8272 2.432628 GCAGTTCGGGTCCTCGTG 60.433 66.667 0.00 0.00 0.00 4.35
3861 8273 2.600769 AGCAGTTCGGGTCCTCGT 60.601 61.111 0.00 0.00 0.00 4.18
3862 8274 2.182030 GAGCAGTTCGGGTCCTCG 59.818 66.667 0.00 0.00 0.00 4.63
3863 8275 2.182030 CGAGCAGTTCGGGTCCTC 59.818 66.667 0.00 0.00 45.54 3.71
3871 8283 6.490566 TTCCTTTAATAAACCGAGCAGTTC 57.509 37.500 0.00 0.00 0.00 3.01
3872 8284 6.887626 TTTCCTTTAATAAACCGAGCAGTT 57.112 33.333 0.00 0.00 0.00 3.16
3873 8285 6.294342 GGTTTTCCTTTAATAAACCGAGCAGT 60.294 38.462 0.00 0.00 40.78 4.40
3874 8286 6.090783 GGTTTTCCTTTAATAAACCGAGCAG 58.909 40.000 0.00 0.00 40.78 4.24
3875 8287 6.016213 GGTTTTCCTTTAATAAACCGAGCA 57.984 37.500 0.00 0.00 40.78 4.26
3880 8292 4.497300 GCCCGGTTTTCCTTTAATAAACC 58.503 43.478 0.00 0.00 44.60 3.27
3881 8293 4.082841 TCGCCCGGTTTTCCTTTAATAAAC 60.083 41.667 0.00 0.00 37.95 2.01
3882 8294 4.077822 TCGCCCGGTTTTCCTTTAATAAA 58.922 39.130 0.00 0.00 37.95 1.40
3883 8295 3.683802 TCGCCCGGTTTTCCTTTAATAA 58.316 40.909 0.00 0.00 37.95 1.40
3884 8296 3.347077 TCGCCCGGTTTTCCTTTAATA 57.653 42.857 0.00 0.00 37.95 0.98
3885 8297 2.203470 TCGCCCGGTTTTCCTTTAAT 57.797 45.000 0.00 0.00 37.95 1.40
3886 8298 1.978454 TTCGCCCGGTTTTCCTTTAA 58.022 45.000 0.00 0.00 37.95 1.52
3887 8299 1.978454 TTTCGCCCGGTTTTCCTTTA 58.022 45.000 0.00 0.00 37.95 1.85
3888 8300 1.112950 TTTTCGCCCGGTTTTCCTTT 58.887 45.000 0.00 0.00 37.95 3.11
3889 8301 0.386476 GTTTTCGCCCGGTTTTCCTT 59.614 50.000 0.00 0.00 37.95 3.36
3890 8302 1.457823 GGTTTTCGCCCGGTTTTCCT 61.458 55.000 0.00 0.00 37.95 3.36
3891 8303 1.007038 GGTTTTCGCCCGGTTTTCC 60.007 57.895 0.00 0.00 0.00 3.13
3892 8304 0.318360 CAGGTTTTCGCCCGGTTTTC 60.318 55.000 0.00 0.00 0.00 2.29
3893 8305 0.752376 TCAGGTTTTCGCCCGGTTTT 60.752 50.000 0.00 0.00 0.00 2.43
3894 8306 0.752376 TTCAGGTTTTCGCCCGGTTT 60.752 50.000 0.00 0.00 0.00 3.27
3895 8307 1.152922 TTCAGGTTTTCGCCCGGTT 60.153 52.632 0.00 0.00 0.00 4.44
3896 8308 1.895231 GTTCAGGTTTTCGCCCGGT 60.895 57.895 0.00 0.00 0.00 5.28
3897 8309 1.448922 TTGTTCAGGTTTTCGCCCGG 61.449 55.000 0.00 0.00 0.00 5.73
3898 8310 0.317519 GTTGTTCAGGTTTTCGCCCG 60.318 55.000 0.00 0.00 0.00 6.13
3899 8311 0.317519 CGTTGTTCAGGTTTTCGCCC 60.318 55.000 0.00 0.00 0.00 6.13
3900 8312 0.317519 CCGTTGTTCAGGTTTTCGCC 60.318 55.000 0.00 0.00 0.00 5.54
3901 8313 0.933047 GCCGTTGTTCAGGTTTTCGC 60.933 55.000 0.00 0.00 0.00 4.70
3902 8314 0.378962 TGCCGTTGTTCAGGTTTTCG 59.621 50.000 0.00 0.00 0.00 3.46
3903 8315 2.159296 ACTTGCCGTTGTTCAGGTTTTC 60.159 45.455 0.00 0.00 0.00 2.29
3904 8316 1.822371 ACTTGCCGTTGTTCAGGTTTT 59.178 42.857 0.00 0.00 0.00 2.43
3905 8317 1.404035 GACTTGCCGTTGTTCAGGTTT 59.596 47.619 0.00 0.00 0.00 3.27
3906 8318 1.021968 GACTTGCCGTTGTTCAGGTT 58.978 50.000 0.00 0.00 0.00 3.50
3907 8319 0.107410 TGACTTGCCGTTGTTCAGGT 60.107 50.000 0.00 0.00 0.00 4.00
3908 8320 0.588252 CTGACTTGCCGTTGTTCAGG 59.412 55.000 0.00 0.00 0.00 3.86
3909 8321 1.581934 TCTGACTTGCCGTTGTTCAG 58.418 50.000 0.00 0.00 0.00 3.02
3910 8322 2.143122 GATCTGACTTGCCGTTGTTCA 58.857 47.619 0.00 0.00 0.00 3.18
3911 8323 2.417719 AGATCTGACTTGCCGTTGTTC 58.582 47.619 0.00 0.00 0.00 3.18
3912 8324 2.550830 AGATCTGACTTGCCGTTGTT 57.449 45.000 0.00 0.00 0.00 2.83
3913 8325 3.678056 TTAGATCTGACTTGCCGTTGT 57.322 42.857 5.18 0.00 0.00 3.32
3914 8326 5.006746 GGTTATTAGATCTGACTTGCCGTTG 59.993 44.000 5.18 0.00 0.00 4.10
3915 8327 5.104900 AGGTTATTAGATCTGACTTGCCGTT 60.105 40.000 5.18 0.00 0.00 4.44
3916 8328 4.406003 AGGTTATTAGATCTGACTTGCCGT 59.594 41.667 5.18 0.00 0.00 5.68
3917 8329 4.950050 AGGTTATTAGATCTGACTTGCCG 58.050 43.478 5.18 0.00 0.00 5.69
3918 8330 6.459923 CCTAGGTTATTAGATCTGACTTGCC 58.540 44.000 5.18 0.90 0.00 4.52
3919 8331 5.929415 GCCTAGGTTATTAGATCTGACTTGC 59.071 44.000 11.31 0.00 0.00 4.01
3920 8332 6.268847 AGGCCTAGGTTATTAGATCTGACTTG 59.731 42.308 1.29 0.00 0.00 3.16
3921 8333 6.386284 AGGCCTAGGTTATTAGATCTGACTT 58.614 40.000 1.29 0.00 0.00 3.01
3922 8334 5.971493 AGGCCTAGGTTATTAGATCTGACT 58.029 41.667 1.29 0.00 0.00 3.41
3923 8335 7.778185 TTAGGCCTAGGTTATTAGATCTGAC 57.222 40.000 13.36 0.00 0.00 3.51
3924 8336 8.648693 GTTTTAGGCCTAGGTTATTAGATCTGA 58.351 37.037 13.36 0.00 0.00 3.27
3925 8337 8.429641 TGTTTTAGGCCTAGGTTATTAGATCTG 58.570 37.037 13.36 0.00 0.00 2.90
3926 8338 8.430431 GTGTTTTAGGCCTAGGTTATTAGATCT 58.570 37.037 13.36 0.00 0.00 2.75
3927 8339 7.660617 GGTGTTTTAGGCCTAGGTTATTAGATC 59.339 40.741 13.36 0.00 0.00 2.75
3928 8340 7.128263 TGGTGTTTTAGGCCTAGGTTATTAGAT 59.872 37.037 13.36 0.00 0.00 1.98
3929 8341 6.444493 TGGTGTTTTAGGCCTAGGTTATTAGA 59.556 38.462 13.36 0.00 0.00 2.10
3930 8342 6.655930 TGGTGTTTTAGGCCTAGGTTATTAG 58.344 40.000 13.36 0.00 0.00 1.73
3931 8343 6.639590 TGGTGTTTTAGGCCTAGGTTATTA 57.360 37.500 13.36 0.00 0.00 0.98
3932 8344 5.523883 TGGTGTTTTAGGCCTAGGTTATT 57.476 39.130 13.36 0.00 0.00 1.40
3933 8345 5.727243 ATGGTGTTTTAGGCCTAGGTTAT 57.273 39.130 13.36 0.00 0.00 1.89
3934 8346 6.639590 TTATGGTGTTTTAGGCCTAGGTTA 57.360 37.500 13.36 0.62 0.00 2.85
3935 8347 5.523883 TTATGGTGTTTTAGGCCTAGGTT 57.476 39.130 13.36 1.68 0.00 3.50
3936 8348 5.727243 ATTATGGTGTTTTAGGCCTAGGT 57.273 39.130 13.36 0.00 0.00 3.08
3937 8349 6.126409 TCAATTATGGTGTTTTAGGCCTAGG 58.874 40.000 13.36 3.67 0.00 3.02
3938 8350 7.122055 TGTTCAATTATGGTGTTTTAGGCCTAG 59.878 37.037 13.36 0.00 0.00 3.02
3939 8351 6.948886 TGTTCAATTATGGTGTTTTAGGCCTA 59.051 34.615 8.91 8.91 0.00 3.93
3940 8352 5.777732 TGTTCAATTATGGTGTTTTAGGCCT 59.222 36.000 11.78 11.78 0.00 5.19
3941 8353 6.031751 TGTTCAATTATGGTGTTTTAGGCC 57.968 37.500 0.00 0.00 0.00 5.19
3948 8360 9.487442 AGGGTTTATATGTTCAATTATGGTGTT 57.513 29.630 0.00 0.00 0.00 3.32
3949 8361 9.131791 GAGGGTTTATATGTTCAATTATGGTGT 57.868 33.333 0.00 0.00 0.00 4.16
3950 8362 9.130661 TGAGGGTTTATATGTTCAATTATGGTG 57.869 33.333 0.00 0.00 0.00 4.17
3951 8363 9.707957 TTGAGGGTTTATATGTTCAATTATGGT 57.292 29.630 0.00 0.00 0.00 3.55
3961 8373 6.790319 ACCACTTCTTGAGGGTTTATATGTT 58.210 36.000 0.00 0.00 0.00 2.71
4010 8422 7.587757 CGAATACTGTTCATAGCATTTAAAGCC 59.412 37.037 0.00 0.00 0.00 4.35
4011 8423 8.122952 ACGAATACTGTTCATAGCATTTAAAGC 58.877 33.333 0.00 0.00 0.00 3.51
4097 8512 3.546002 TTGCAGCGGTGTGTTTTATAC 57.454 42.857 17.07 0.00 0.00 1.47
4106 8521 0.537143 TTTCTCCATTGCAGCGGTGT 60.537 50.000 17.07 0.00 0.00 4.16
4249 8667 1.182385 CCGGAGTAGGGGAGATGAGC 61.182 65.000 0.00 0.00 0.00 4.26
4296 8715 1.728490 GCCGAAATCCATGGGCTGAC 61.728 60.000 13.02 0.00 42.29 3.51
4371 8790 1.138661 GCCTCTCCAACTCCAGATCAG 59.861 57.143 0.00 0.00 0.00 2.90
4372 8791 1.198713 GCCTCTCCAACTCCAGATCA 58.801 55.000 0.00 0.00 0.00 2.92
4412 8831 2.068821 GCAGCCTCCTCCATCTCCA 61.069 63.158 0.00 0.00 0.00 3.86
4458 8877 1.133294 CCTACTCCCTTCCTCCTCTCC 60.133 61.905 0.00 0.00 0.00 3.71
4533 8956 1.202580 AGAGAGAGAGAGAGAGAGCGC 60.203 57.143 0.00 0.00 0.00 5.92
4535 8958 3.640967 AGAGAGAGAGAGAGAGAGAGAGC 59.359 52.174 0.00 0.00 0.00 4.09
4569 9006 3.114650 CGCGAGATGCAGGAGAGA 58.885 61.111 0.00 0.00 46.97 3.10
4588 9025 2.743928 CACCAGCAGGACGGCTTC 60.744 66.667 0.35 0.00 42.71 3.86
4626 9063 4.731612 CACTCACTGGCGCTCGCT 62.732 66.667 7.64 0.00 41.60 4.93
4627 9064 3.626680 TACACTCACTGGCGCTCGC 62.627 63.158 7.64 5.60 41.06 5.03
4677 9114 3.972971 CTGCCAGGCTCCTGCACTC 62.973 68.421 14.15 0.67 42.35 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.