Multiple sequence alignment - TraesCS3D01G383400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G383400 chr3D 100.000 3623 0 0 4453 8075 498870590 498874212 0.000000e+00 6691.0
1 TraesCS3D01G383400 chr3D 100.000 2279 0 0 1 2279 498866138 498868416 0.000000e+00 4209.0
2 TraesCS3D01G383400 chr3D 100.000 1136 0 0 2467 3602 498868604 498869739 0.000000e+00 2098.0
3 TraesCS3D01G383400 chr3B 94.734 1975 62 15 5468 7437 659575579 659577516 0.000000e+00 3033.0
4 TraesCS3D01G383400 chr3B 95.493 1553 43 5 753 2279 659572394 659573945 0.000000e+00 2455.0
5 TraesCS3D01G383400 chr3B 95.200 1125 19 5 2478 3602 659574356 659575445 0.000000e+00 1746.0
6 TraesCS3D01G383400 chr3B 94.645 1027 42 4 4453 5467 759186264 759185239 0.000000e+00 1580.0
7 TraesCS3D01G383400 chr3B 94.547 1027 43 4 4453 5467 803058035 803057010 0.000000e+00 1574.0
8 TraesCS3D01G383400 chr3B 94.727 512 13 3 7431 7941 659582651 659583149 0.000000e+00 784.0
9 TraesCS3D01G383400 chr3B 93.028 502 24 8 1 499 659571906 659572399 0.000000e+00 723.0
10 TraesCS3D01G383400 chr3B 94.961 258 7 4 508 759 423737233 423737490 4.540000e-107 399.0
11 TraesCS3D01G383400 chr3B 95.294 85 4 0 7941 8025 659583179 659583263 1.410000e-27 135.0
12 TraesCS3D01G383400 chr3B 100.000 48 0 0 6447 6494 434708695 434708648 1.120000e-13 89.8
13 TraesCS3D01G383400 chr3A 92.629 1533 72 8 779 2279 638978329 638979852 0.000000e+00 2167.0
14 TraesCS3D01G383400 chr3A 95.048 1050 41 7 6492 7535 638982601 638983645 0.000000e+00 1640.0
15 TraesCS3D01G383400 chr3A 96.375 938 28 4 2467 3404 638979920 638980851 0.000000e+00 1539.0
16 TraesCS3D01G383400 chr3A 92.348 954 44 10 5473 6412 638981495 638982433 0.000000e+00 1330.0
17 TraesCS3D01G383400 chr3A 84.729 406 28 11 7701 8075 638984004 638984406 7.650000e-100 375.0
18 TraesCS3D01G383400 chr3A 86.957 92 3 5 757 848 638976194 638976276 2.400000e-15 95.3
19 TraesCS3D01G383400 chr3A 95.833 48 2 0 294 341 638976043 638976090 2.420000e-10 78.7
20 TraesCS3D01G383400 chr3A 100.000 28 0 0 6410 6437 638982536 638982563 1.500000e-02 52.8
21 TraesCS3D01G383400 chr7D 95.914 1028 28 6 4453 5468 498241044 498242069 0.000000e+00 1653.0
22 TraesCS3D01G383400 chr7D 95.285 1018 40 4 4453 5466 589882769 589883782 0.000000e+00 1607.0
23 TraesCS3D01G383400 chr7D 98.077 52 1 0 6442 6493 370726243 370726294 3.100000e-14 91.6
24 TraesCS3D01G383400 chr7A 94.927 1025 41 3 4453 5466 693801729 693800705 0.000000e+00 1594.0
25 TraesCS3D01G383400 chr7A 95.349 258 6 4 508 759 182858022 182858279 9.760000e-109 405.0
26 TraesCS3D01G383400 chr7A 94.961 258 7 4 508 759 627156453 627156710 4.540000e-107 399.0
27 TraesCS3D01G383400 chrUn 94.834 1026 40 4 4453 5466 47897961 47898985 0.000000e+00 1589.0
28 TraesCS3D01G383400 chr2B 94.732 1025 42 5 4453 5466 123192231 123191208 0.000000e+00 1583.0
29 TraesCS3D01G383400 chr4B 94.695 1018 49 3 4453 5466 382233272 382234288 0.000000e+00 1576.0
30 TraesCS3D01G383400 chr4B 94.961 258 7 4 508 759 662387032 662386775 4.540000e-107 399.0
31 TraesCS3D01G383400 chr4B 94.828 58 2 1 6447 6504 364042169 364042225 1.120000e-13 89.8
32 TraesCS3D01G383400 chr4B 92.063 63 2 3 6447 6507 21198696 21198635 1.440000e-12 86.1
33 TraesCS3D01G383400 chr5A 94.597 1018 46 6 4455 5468 456071024 456072036 0.000000e+00 1567.0
34 TraesCS3D01G383400 chr5A 95.331 257 6 4 508 758 534990708 534990452 3.510000e-108 403.0
35 TraesCS3D01G383400 chr5A 91.339 127 10 1 7577 7703 51689123 51688998 1.080000e-38 172.0
36 TraesCS3D01G383400 chr5D 96.016 251 8 2 508 756 428836356 428836106 2.710000e-109 407.0
37 TraesCS3D01G383400 chr5D 92.126 127 9 1 7577 7703 61714067 61713942 2.320000e-40 178.0
38 TraesCS3D01G383400 chr4A 95.385 260 5 5 508 761 656477820 656478078 2.710000e-109 407.0
39 TraesCS3D01G383400 chr4A 94.961 258 7 4 508 759 11322661 11322918 4.540000e-107 399.0
40 TraesCS3D01G383400 chr4A 92.857 126 8 1 7572 7697 565304094 565304218 1.790000e-41 182.0
41 TraesCS3D01G383400 chr5B 94.961 258 7 4 508 759 459570879 459571136 4.540000e-107 399.0
42 TraesCS3D01G383400 chr5B 92.126 127 9 1 7577 7703 68901215 68901340 2.320000e-40 178.0
43 TraesCS3D01G383400 chr5B 96.296 54 2 0 6447 6500 693583853 693583906 1.120000e-13 89.8
44 TraesCS3D01G383400 chr6D 93.388 121 7 1 7583 7703 221843135 221843016 2.320000e-40 178.0
45 TraesCS3D01G383400 chr6A 92.623 122 8 1 7582 7703 263887007 263886887 3.000000e-39 174.0
46 TraesCS3D01G383400 chr4D 90.299 134 10 3 7571 7703 354880645 354880776 1.080000e-38 172.0
47 TraesCS3D01G383400 chr4D 94.828 58 2 1 6447 6504 295575099 295575043 1.120000e-13 89.8
48 TraesCS3D01G383400 chr6B 89.394 132 12 2 7577 7708 519402813 519402942 1.800000e-36 165.0
49 TraesCS3D01G383400 chr2D 96.491 57 1 1 6447 6503 52051431 52051486 8.630000e-15 93.5
50 TraesCS3D01G383400 chr1D 89.333 75 4 4 6447 6517 414709737 414709663 3.100000e-14 91.6
51 TraesCS3D01G383400 chr1A 84.810 79 9 3 6447 6524 506548639 506548715 8.690000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G383400 chr3D 498866138 498874212 8074 False 4332.666667 6691 100.000000 1 8075 3 chr3D.!!$F1 8074
1 TraesCS3D01G383400 chr3B 659571906 659577516 5610 False 1989.250000 3033 94.613750 1 7437 4 chr3B.!!$F2 7436
2 TraesCS3D01G383400 chr3B 759185239 759186264 1025 True 1580.000000 1580 94.645000 4453 5467 1 chr3B.!!$R2 1014
3 TraesCS3D01G383400 chr3B 803057010 803058035 1025 True 1574.000000 1574 94.547000 4453 5467 1 chr3B.!!$R3 1014
4 TraesCS3D01G383400 chr3B 659582651 659583263 612 False 459.500000 784 95.010500 7431 8025 2 chr3B.!!$F3 594
5 TraesCS3D01G383400 chr3A 638976043 638984406 8363 False 909.725000 2167 92.989875 294 8075 8 chr3A.!!$F1 7781
6 TraesCS3D01G383400 chr7D 498241044 498242069 1025 False 1653.000000 1653 95.914000 4453 5468 1 chr7D.!!$F2 1015
7 TraesCS3D01G383400 chr7D 589882769 589883782 1013 False 1607.000000 1607 95.285000 4453 5466 1 chr7D.!!$F3 1013
8 TraesCS3D01G383400 chr7A 693800705 693801729 1024 True 1594.000000 1594 94.927000 4453 5466 1 chr7A.!!$R1 1013
9 TraesCS3D01G383400 chrUn 47897961 47898985 1024 False 1589.000000 1589 94.834000 4453 5466 1 chrUn.!!$F1 1013
10 TraesCS3D01G383400 chr2B 123191208 123192231 1023 True 1583.000000 1583 94.732000 4453 5466 1 chr2B.!!$R1 1013
11 TraesCS3D01G383400 chr4B 382233272 382234288 1016 False 1576.000000 1576 94.695000 4453 5466 1 chr4B.!!$F2 1013
12 TraesCS3D01G383400 chr5A 456071024 456072036 1012 False 1567.000000 1567 94.597000 4455 5468 1 chr5A.!!$F1 1013

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
511 532 0.107654 GGCATAAGGCTGGTCGAACT 60.108 55.000 0.33 0.0 44.01 3.01 F
757 778 0.323360 GCCCATTGTGACCAGCCTAA 60.323 55.000 0.00 0.0 0.00 2.69 F
1375 3535 0.737367 CTCTGGCGAATCGTGCTGAA 60.737 55.000 4.07 0.0 0.00 3.02 F
2247 4416 1.269309 CGGAGGCCTGATTTACTCTCG 60.269 57.143 12.00 0.0 0.00 4.04 F
3225 5624 1.673033 GCGAGTGGTACTGTCAATGCT 60.673 52.381 0.00 0.0 0.00 3.79 F
3589 5990 3.006940 ACGTGTGTGAATTTCTGTGTGT 58.993 40.909 0.00 0.0 0.00 3.72 F
4964 7443 1.869767 CTTGTTGTGCAGACCTCACTC 59.130 52.381 0.00 0.0 35.58 3.51 F
6439 9038 0.169894 GAGTAAGCAAGCCAGCAAGC 59.830 55.000 0.55 0.0 36.85 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1314 3472 1.106944 CACCCTCCCACGCAAAAAGT 61.107 55.000 0.00 0.0 0.00 2.66 R
2150 4319 1.649664 CTGGCAGATTTCAGGAGTCG 58.350 55.000 9.42 0.0 0.00 4.18 R
3108 5507 1.459592 CTTGGTTCTAAACTGCGACCG 59.540 52.381 0.00 0.0 33.07 4.79 R
3493 5892 3.134081 GCTGGTACCAAGTGCTTATAGGA 59.866 47.826 17.11 0.0 0.00 2.94 R
4937 7416 2.027192 GGTCTGCACAACAAGGGATAGA 60.027 50.000 0.00 0.0 0.00 1.98 R
5002 7481 2.048023 CCATCTTGCGCCACCATGT 61.048 57.895 4.18 0.0 0.00 3.21 R
6477 9076 0.896226 GCATATACTCCCTCCGTCCC 59.104 60.000 0.00 0.0 0.00 4.46 R
7291 9895 0.320421 CGAACTCTGCCCTTTCCGAA 60.320 55.000 0.00 0.0 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 90 0.671781 CCGAAGACCTTGCTCCACAG 60.672 60.000 0.00 0.00 0.00 3.66
125 127 5.937975 ATTTAAACACCCCATCCTTCATG 57.062 39.130 0.00 0.00 0.00 3.07
126 128 1.560505 AAACACCCCATCCTTCATGC 58.439 50.000 0.00 0.00 0.00 4.06
128 130 1.595311 ACACCCCATCCTTCATGCTA 58.405 50.000 0.00 0.00 0.00 3.49
139 141 3.641436 TCCTTCATGCTACACATATCCGT 59.359 43.478 0.00 0.00 36.64 4.69
179 181 8.045176 ACTTCTCATTAAGTTGTTTATCTGGC 57.955 34.615 0.00 0.00 36.26 4.85
184 186 7.915508 TCATTAAGTTGTTTATCTGGCATACG 58.084 34.615 0.00 0.00 0.00 3.06
187 189 6.657836 AAGTTGTTTATCTGGCATACGTAC 57.342 37.500 0.00 0.00 0.00 3.67
226 228 9.784531 ATATACCTCTTCATTGATGTTGTTAGG 57.215 33.333 0.08 0.00 0.00 2.69
237 239 3.412237 TGTTGTTAGGGCAACTCCTAC 57.588 47.619 9.80 0.00 46.33 3.18
244 246 0.611714 GGGCAACTCCTACGGAAGAA 59.388 55.000 0.00 0.00 34.39 2.52
245 247 1.002773 GGGCAACTCCTACGGAAGAAA 59.997 52.381 0.00 0.00 34.39 2.52
246 248 2.551504 GGGCAACTCCTACGGAAGAAAA 60.552 50.000 0.00 0.00 34.39 2.29
247 249 3.344515 GGCAACTCCTACGGAAGAAAAT 58.655 45.455 0.00 0.00 0.00 1.82
248 250 3.127030 GGCAACTCCTACGGAAGAAAATG 59.873 47.826 0.00 0.00 0.00 2.32
249 251 3.127030 GCAACTCCTACGGAAGAAAATGG 59.873 47.826 0.00 0.00 0.00 3.16
250 252 4.575885 CAACTCCTACGGAAGAAAATGGA 58.424 43.478 0.00 0.00 0.00 3.41
458 479 6.220726 ACAAATGAAAAAGGCAGTAGTTGT 57.779 33.333 0.00 0.00 0.00 3.32
501 522 1.672881 CAGTAGTTGCTGGCATAAGGC 59.327 52.381 0.00 0.00 43.74 4.35
502 523 1.561542 AGTAGTTGCTGGCATAAGGCT 59.438 47.619 0.00 0.00 44.01 4.58
503 524 1.672881 GTAGTTGCTGGCATAAGGCTG 59.327 52.381 0.00 0.00 44.01 4.85
504 525 0.682209 AGTTGCTGGCATAAGGCTGG 60.682 55.000 0.00 0.00 44.01 4.85
505 526 0.967380 GTTGCTGGCATAAGGCTGGT 60.967 55.000 0.00 0.00 44.01 4.00
506 527 0.680921 TTGCTGGCATAAGGCTGGTC 60.681 55.000 0.00 0.00 44.01 4.02
507 528 2.182842 GCTGGCATAAGGCTGGTCG 61.183 63.158 0.00 0.00 44.01 4.79
508 529 1.522092 CTGGCATAAGGCTGGTCGA 59.478 57.895 0.00 0.00 44.01 4.20
509 530 0.107703 CTGGCATAAGGCTGGTCGAA 60.108 55.000 0.00 0.00 44.01 3.71
510 531 0.392461 TGGCATAAGGCTGGTCGAAC 60.392 55.000 0.00 0.00 44.01 3.95
511 532 0.107654 GGCATAAGGCTGGTCGAACT 60.108 55.000 0.33 0.00 44.01 3.01
512 533 1.679032 GGCATAAGGCTGGTCGAACTT 60.679 52.381 0.33 0.00 44.01 2.66
513 534 2.419574 GGCATAAGGCTGGTCGAACTTA 60.420 50.000 0.33 0.00 44.01 2.24
514 535 2.866762 GCATAAGGCTGGTCGAACTTAG 59.133 50.000 0.33 0.00 40.25 2.18
515 536 3.458189 CATAAGGCTGGTCGAACTTAGG 58.542 50.000 0.33 0.00 0.00 2.69
516 537 1.640917 AAGGCTGGTCGAACTTAGGA 58.359 50.000 0.33 0.00 0.00 2.94
517 538 1.187087 AGGCTGGTCGAACTTAGGAG 58.813 55.000 0.33 0.00 0.00 3.69
518 539 0.896226 GGCTGGTCGAACTTAGGAGT 59.104 55.000 0.33 0.00 37.87 3.85
519 540 2.097825 GGCTGGTCGAACTTAGGAGTA 58.902 52.381 0.33 0.00 34.21 2.59
520 541 2.494870 GGCTGGTCGAACTTAGGAGTAA 59.505 50.000 0.33 0.00 34.21 2.24
521 542 3.509740 GCTGGTCGAACTTAGGAGTAAC 58.490 50.000 0.33 0.00 34.21 2.50
522 543 3.057033 GCTGGTCGAACTTAGGAGTAACA 60.057 47.826 0.33 0.00 34.21 2.41
523 544 4.381718 GCTGGTCGAACTTAGGAGTAACAT 60.382 45.833 0.33 0.00 34.21 2.71
524 545 5.320549 TGGTCGAACTTAGGAGTAACATC 57.679 43.478 0.33 0.00 34.21 3.06
525 546 4.768448 TGGTCGAACTTAGGAGTAACATCA 59.232 41.667 0.33 0.00 34.21 3.07
526 547 5.100943 GGTCGAACTTAGGAGTAACATCAC 58.899 45.833 0.00 0.00 34.21 3.06
527 548 5.336213 GGTCGAACTTAGGAGTAACATCACA 60.336 44.000 0.00 0.00 34.21 3.58
528 549 5.572126 GTCGAACTTAGGAGTAACATCACAC 59.428 44.000 0.00 0.00 34.21 3.82
529 550 5.242171 TCGAACTTAGGAGTAACATCACACA 59.758 40.000 0.00 0.00 34.21 3.72
530 551 5.345202 CGAACTTAGGAGTAACATCACACAC 59.655 44.000 0.00 0.00 34.21 3.82
531 552 6.420913 AACTTAGGAGTAACATCACACACT 57.579 37.500 0.00 0.00 34.21 3.55
532 553 6.420913 ACTTAGGAGTAACATCACACACTT 57.579 37.500 0.00 0.00 33.32 3.16
533 554 6.456501 ACTTAGGAGTAACATCACACACTTC 58.543 40.000 0.00 0.00 33.32 3.01
534 555 4.955811 AGGAGTAACATCACACACTTCA 57.044 40.909 0.00 0.00 0.00 3.02
535 556 5.290493 AGGAGTAACATCACACACTTCAA 57.710 39.130 0.00 0.00 0.00 2.69
536 557 5.869579 AGGAGTAACATCACACACTTCAAT 58.130 37.500 0.00 0.00 0.00 2.57
537 558 7.004555 AGGAGTAACATCACACACTTCAATA 57.995 36.000 0.00 0.00 0.00 1.90
538 559 6.874134 AGGAGTAACATCACACACTTCAATAC 59.126 38.462 0.00 0.00 0.00 1.89
539 560 6.649141 GGAGTAACATCACACACTTCAATACA 59.351 38.462 0.00 0.00 0.00 2.29
540 561 7.172532 GGAGTAACATCACACACTTCAATACAA 59.827 37.037 0.00 0.00 0.00 2.41
541 562 7.861630 AGTAACATCACACACTTCAATACAAC 58.138 34.615 0.00 0.00 0.00 3.32
542 563 6.942532 AACATCACACACTTCAATACAACT 57.057 33.333 0.00 0.00 0.00 3.16
543 564 6.942532 ACATCACACACTTCAATACAACTT 57.057 33.333 0.00 0.00 0.00 2.66
544 565 7.333528 ACATCACACACTTCAATACAACTTT 57.666 32.000 0.00 0.00 0.00 2.66
545 566 7.195646 ACATCACACACTTCAATACAACTTTG 58.804 34.615 0.00 0.00 0.00 2.77
546 567 5.577835 TCACACACTTCAATACAACTTTGC 58.422 37.500 0.00 0.00 0.00 3.68
547 568 5.356751 TCACACACTTCAATACAACTTTGCT 59.643 36.000 0.00 0.00 0.00 3.91
548 569 6.035843 CACACACTTCAATACAACTTTGCTT 58.964 36.000 0.00 0.00 0.00 3.91
549 570 7.066404 TCACACACTTCAATACAACTTTGCTTA 59.934 33.333 0.00 0.00 0.00 3.09
550 571 7.862372 CACACACTTCAATACAACTTTGCTTAT 59.138 33.333 0.00 0.00 0.00 1.73
551 572 7.862372 ACACACTTCAATACAACTTTGCTTATG 59.138 33.333 0.00 0.00 0.00 1.90
552 573 7.862372 CACACTTCAATACAACTTTGCTTATGT 59.138 33.333 0.00 0.00 0.00 2.29
553 574 9.062524 ACACTTCAATACAACTTTGCTTATGTA 57.937 29.630 0.00 0.00 33.24 2.29
554 575 9.546909 CACTTCAATACAACTTTGCTTATGTAG 57.453 33.333 0.00 0.00 32.31 2.74
576 597 9.755804 TGTAGCACATATTTAATGAAGAGAGAG 57.244 33.333 0.00 0.00 0.00 3.20
577 598 9.202273 GTAGCACATATTTAATGAAGAGAGAGG 57.798 37.037 0.00 0.00 0.00 3.69
578 599 7.800092 AGCACATATTTAATGAAGAGAGAGGT 58.200 34.615 0.00 0.00 0.00 3.85
579 600 7.714377 AGCACATATTTAATGAAGAGAGAGGTG 59.286 37.037 0.00 0.00 0.00 4.00
580 601 7.519649 GCACATATTTAATGAAGAGAGAGGTGC 60.520 40.741 0.00 0.00 37.76 5.01
581 602 7.714377 CACATATTTAATGAAGAGAGAGGTGCT 59.286 37.037 0.00 0.00 0.00 4.40
582 603 8.270744 ACATATTTAATGAAGAGAGAGGTGCTT 58.729 33.333 0.00 0.00 0.00 3.91
583 604 6.998968 ATTTAATGAAGAGAGAGGTGCTTG 57.001 37.500 0.00 0.00 0.00 4.01
584 605 5.489792 TTAATGAAGAGAGAGGTGCTTGT 57.510 39.130 0.00 0.00 0.00 3.16
585 606 2.827800 TGAAGAGAGAGGTGCTTGTG 57.172 50.000 0.00 0.00 0.00 3.33
586 607 1.345741 TGAAGAGAGAGGTGCTTGTGG 59.654 52.381 0.00 0.00 0.00 4.17
587 608 1.346068 GAAGAGAGAGGTGCTTGTGGT 59.654 52.381 0.00 0.00 0.00 4.16
588 609 2.310779 AGAGAGAGGTGCTTGTGGTA 57.689 50.000 0.00 0.00 0.00 3.25
589 610 2.609747 AGAGAGAGGTGCTTGTGGTAA 58.390 47.619 0.00 0.00 0.00 2.85
590 611 2.300437 AGAGAGAGGTGCTTGTGGTAAC 59.700 50.000 0.00 0.00 0.00 2.50
591 612 2.300437 GAGAGAGGTGCTTGTGGTAACT 59.700 50.000 0.00 0.00 37.61 2.24
592 613 3.507411 AGAGAGGTGCTTGTGGTAACTA 58.493 45.455 0.00 0.00 37.61 2.24
593 614 3.511934 AGAGAGGTGCTTGTGGTAACTAG 59.488 47.826 0.00 0.00 37.61 2.57
612 633 6.276832 ACTAGCTAAGTTACCGAAACATCA 57.723 37.500 0.00 0.00 40.83 3.07
613 634 6.098017 ACTAGCTAAGTTACCGAAACATCAC 58.902 40.000 0.00 0.00 40.83 3.06
614 635 4.890088 AGCTAAGTTACCGAAACATCACA 58.110 39.130 0.00 0.00 40.83 3.58
615 636 4.689345 AGCTAAGTTACCGAAACATCACAC 59.311 41.667 0.00 0.00 40.83 3.82
616 637 4.449743 GCTAAGTTACCGAAACATCACACA 59.550 41.667 3.87 0.00 40.83 3.72
617 638 4.806342 AAGTTACCGAAACATCACACAC 57.194 40.909 3.87 0.00 40.83 3.82
618 639 4.067972 AGTTACCGAAACATCACACACT 57.932 40.909 3.87 0.00 40.83 3.55
619 640 4.056050 AGTTACCGAAACATCACACACTC 58.944 43.478 3.87 0.00 40.83 3.51
620 641 1.878953 ACCGAAACATCACACACTCC 58.121 50.000 0.00 0.00 0.00 3.85
621 642 1.140052 ACCGAAACATCACACACTCCA 59.860 47.619 0.00 0.00 0.00 3.86
622 643 2.217750 CCGAAACATCACACACTCCAA 58.782 47.619 0.00 0.00 0.00 3.53
623 644 2.224079 CCGAAACATCACACACTCCAAG 59.776 50.000 0.00 0.00 0.00 3.61
624 645 3.130633 CGAAACATCACACACTCCAAGA 58.869 45.455 0.00 0.00 0.00 3.02
625 646 3.559655 CGAAACATCACACACTCCAAGAA 59.440 43.478 0.00 0.00 0.00 2.52
626 647 4.035091 CGAAACATCACACACTCCAAGAAA 59.965 41.667 0.00 0.00 0.00 2.52
627 648 4.900635 AACATCACACACTCCAAGAAAC 57.099 40.909 0.00 0.00 0.00 2.78
628 649 3.884895 ACATCACACACTCCAAGAAACA 58.115 40.909 0.00 0.00 0.00 2.83
629 650 4.269183 ACATCACACACTCCAAGAAACAA 58.731 39.130 0.00 0.00 0.00 2.83
630 651 4.889409 ACATCACACACTCCAAGAAACAAT 59.111 37.500 0.00 0.00 0.00 2.71
631 652 4.898829 TCACACACTCCAAGAAACAATG 57.101 40.909 0.00 0.00 0.00 2.82
632 653 4.522114 TCACACACTCCAAGAAACAATGA 58.478 39.130 0.00 0.00 0.00 2.57
633 654 4.576053 TCACACACTCCAAGAAACAATGAG 59.424 41.667 0.00 0.00 0.00 2.90
634 655 4.336433 CACACACTCCAAGAAACAATGAGT 59.664 41.667 0.00 0.00 36.77 3.41
635 656 4.576463 ACACACTCCAAGAAACAATGAGTC 59.424 41.667 0.00 0.00 34.21 3.36
636 657 4.818546 CACACTCCAAGAAACAATGAGTCT 59.181 41.667 0.00 0.00 34.21 3.24
637 658 5.991606 CACACTCCAAGAAACAATGAGTCTA 59.008 40.000 0.00 0.00 34.21 2.59
638 659 6.652481 CACACTCCAAGAAACAATGAGTCTAT 59.348 38.462 0.00 0.00 34.21 1.98
639 660 7.819415 CACACTCCAAGAAACAATGAGTCTATA 59.181 37.037 0.00 0.00 34.21 1.31
640 661 8.375506 ACACTCCAAGAAACAATGAGTCTATAA 58.624 33.333 0.00 0.00 34.21 0.98
641 662 8.660373 CACTCCAAGAAACAATGAGTCTATAAC 58.340 37.037 0.00 0.00 34.21 1.89
642 663 7.824779 ACTCCAAGAAACAATGAGTCTATAACC 59.175 37.037 0.00 0.00 30.81 2.85
643 664 7.918076 TCCAAGAAACAATGAGTCTATAACCT 58.082 34.615 0.00 0.00 0.00 3.50
644 665 9.042450 TCCAAGAAACAATGAGTCTATAACCTA 57.958 33.333 0.00 0.00 0.00 3.08
645 666 9.667107 CCAAGAAACAATGAGTCTATAACCTAA 57.333 33.333 0.00 0.00 0.00 2.69
666 687 9.607988 ACCTAATAAATACATCGTTGAATGACA 57.392 29.630 0.00 0.00 0.00 3.58
667 688 9.864034 CCTAATAAATACATCGTTGAATGACAC 57.136 33.333 0.00 0.00 0.00 3.67
671 692 7.899178 AAATACATCGTTGAATGACACTACA 57.101 32.000 0.00 0.00 0.00 2.74
672 693 8.492673 AAATACATCGTTGAATGACACTACAT 57.507 30.769 0.00 0.00 0.00 2.29
673 694 9.594478 AAATACATCGTTGAATGACACTACATA 57.406 29.630 0.00 0.00 0.00 2.29
674 695 8.803201 ATACATCGTTGAATGACACTACATAG 57.197 34.615 0.00 0.00 0.00 2.23
675 696 6.863275 ACATCGTTGAATGACACTACATAGA 58.137 36.000 0.00 0.00 0.00 1.98
676 697 7.492524 ACATCGTTGAATGACACTACATAGAT 58.507 34.615 0.00 0.00 0.00 1.98
677 698 7.436376 ACATCGTTGAATGACACTACATAGATG 59.564 37.037 0.00 0.00 36.35 2.90
678 699 6.863275 TCGTTGAATGACACTACATAGATGT 58.137 36.000 0.08 0.08 44.48 3.06
679 700 7.320399 TCGTTGAATGACACTACATAGATGTT 58.680 34.615 0.00 0.00 41.97 2.71
680 701 7.488150 TCGTTGAATGACACTACATAGATGTTC 59.512 37.037 0.00 0.00 41.97 3.18
681 702 7.254117 CGTTGAATGACACTACATAGATGTTCC 60.254 40.741 0.00 0.00 41.97 3.62
682 703 7.423844 TGAATGACACTACATAGATGTTCCT 57.576 36.000 0.00 0.00 41.97 3.36
683 704 8.533569 TGAATGACACTACATAGATGTTCCTA 57.466 34.615 0.00 0.00 41.97 2.94
684 705 8.414003 TGAATGACACTACATAGATGTTCCTAC 58.586 37.037 0.00 0.00 41.97 3.18
685 706 6.710597 TGACACTACATAGATGTTCCTACC 57.289 41.667 0.00 0.00 41.97 3.18
686 707 5.597182 TGACACTACATAGATGTTCCTACCC 59.403 44.000 0.00 0.00 41.97 3.69
687 708 5.525484 ACACTACATAGATGTTCCTACCCA 58.475 41.667 0.00 0.00 41.97 4.51
688 709 6.143915 ACACTACATAGATGTTCCTACCCAT 58.856 40.000 0.00 0.00 41.97 4.00
689 710 6.615726 ACACTACATAGATGTTCCTACCCATT 59.384 38.462 0.00 0.00 41.97 3.16
690 711 7.787904 ACACTACATAGATGTTCCTACCCATTA 59.212 37.037 0.00 0.00 41.97 1.90
691 712 8.816894 CACTACATAGATGTTCCTACCCATTAT 58.183 37.037 0.00 0.00 41.97 1.28
692 713 8.816894 ACTACATAGATGTTCCTACCCATTATG 58.183 37.037 0.00 0.00 41.97 1.90
693 714 7.872061 ACATAGATGTTCCTACCCATTATGA 57.128 36.000 0.00 0.00 37.90 2.15
694 715 8.275187 ACATAGATGTTCCTACCCATTATGAA 57.725 34.615 0.00 0.00 37.90 2.57
695 716 8.378565 ACATAGATGTTCCTACCCATTATGAAG 58.621 37.037 0.00 0.00 37.90 3.02
696 717 6.192970 AGATGTTCCTACCCATTATGAAGG 57.807 41.667 0.00 0.00 0.00 3.46
697 718 5.672194 AGATGTTCCTACCCATTATGAAGGT 59.328 40.000 0.00 0.00 37.69 3.50
698 719 6.849697 AGATGTTCCTACCCATTATGAAGGTA 59.150 38.462 0.00 0.00 35.02 3.08
708 729 8.562949 ACCCATTATGAAGGTAGTAACATAGT 57.437 34.615 0.00 0.00 30.13 2.12
709 730 8.648693 ACCCATTATGAAGGTAGTAACATAGTC 58.351 37.037 0.00 0.00 30.13 2.59
710 731 8.871125 CCCATTATGAAGGTAGTAACATAGTCT 58.129 37.037 0.00 0.00 0.00 3.24
716 737 9.710818 ATGAAGGTAGTAACATAGTCTAGGAAA 57.289 33.333 0.00 0.00 0.00 3.13
717 738 9.186837 TGAAGGTAGTAACATAGTCTAGGAAAG 57.813 37.037 0.00 0.00 0.00 2.62
718 739 9.187996 GAAGGTAGTAACATAGTCTAGGAAAGT 57.812 37.037 0.00 0.00 0.00 2.66
719 740 8.522542 AGGTAGTAACATAGTCTAGGAAAGTG 57.477 38.462 0.00 0.00 0.00 3.16
720 741 8.114743 AGGTAGTAACATAGTCTAGGAAAGTGT 58.885 37.037 0.00 0.00 0.00 3.55
721 742 8.189460 GGTAGTAACATAGTCTAGGAAAGTGTG 58.811 40.741 0.00 0.00 0.00 3.82
722 743 7.778185 AGTAACATAGTCTAGGAAAGTGTGT 57.222 36.000 0.00 0.00 0.00 3.72
723 744 8.874744 AGTAACATAGTCTAGGAAAGTGTGTA 57.125 34.615 0.00 0.00 0.00 2.90
724 745 9.305555 AGTAACATAGTCTAGGAAAGTGTGTAA 57.694 33.333 0.00 0.00 0.00 2.41
725 746 9.570488 GTAACATAGTCTAGGAAAGTGTGTAAG 57.430 37.037 0.00 0.00 0.00 2.34
726 747 7.778185 ACATAGTCTAGGAAAGTGTGTAAGT 57.222 36.000 0.00 0.00 0.00 2.24
727 748 8.191534 ACATAGTCTAGGAAAGTGTGTAAGTT 57.808 34.615 0.00 0.00 0.00 2.66
728 749 9.305555 ACATAGTCTAGGAAAGTGTGTAAGTTA 57.694 33.333 0.00 0.00 0.00 2.24
739 760 9.595357 GAAAGTGTGTAAGTTATTAGTTCTTGC 57.405 33.333 0.00 0.00 0.00 4.01
740 761 7.668525 AGTGTGTAAGTTATTAGTTCTTGCC 57.331 36.000 0.00 0.00 0.00 4.52
741 762 6.653740 AGTGTGTAAGTTATTAGTTCTTGCCC 59.346 38.462 0.00 0.00 0.00 5.36
742 763 6.428771 GTGTGTAAGTTATTAGTTCTTGCCCA 59.571 38.462 0.00 0.00 0.00 5.36
743 764 7.120726 GTGTGTAAGTTATTAGTTCTTGCCCAT 59.879 37.037 0.00 0.00 0.00 4.00
744 765 7.668052 TGTGTAAGTTATTAGTTCTTGCCCATT 59.332 33.333 0.00 0.00 0.00 3.16
745 766 7.968405 GTGTAAGTTATTAGTTCTTGCCCATTG 59.032 37.037 0.00 0.00 0.00 2.82
746 767 7.668052 TGTAAGTTATTAGTTCTTGCCCATTGT 59.332 33.333 0.00 0.00 0.00 2.71
747 768 6.515272 AGTTATTAGTTCTTGCCCATTGTG 57.485 37.500 0.00 0.00 0.00 3.33
748 769 6.245408 AGTTATTAGTTCTTGCCCATTGTGA 58.755 36.000 0.00 0.00 0.00 3.58
749 770 6.151144 AGTTATTAGTTCTTGCCCATTGTGAC 59.849 38.462 0.00 0.00 0.00 3.67
750 771 1.620822 AGTTCTTGCCCATTGTGACC 58.379 50.000 0.00 0.00 0.00 4.02
751 772 1.133513 AGTTCTTGCCCATTGTGACCA 60.134 47.619 0.00 0.00 0.00 4.02
752 773 1.270550 GTTCTTGCCCATTGTGACCAG 59.729 52.381 0.00 0.00 0.00 4.00
753 774 0.895100 TCTTGCCCATTGTGACCAGC 60.895 55.000 0.00 0.00 0.00 4.85
754 775 1.880819 CTTGCCCATTGTGACCAGCC 61.881 60.000 0.00 0.00 0.00 4.85
755 776 2.036256 GCCCATTGTGACCAGCCT 59.964 61.111 0.00 0.00 0.00 4.58
756 777 1.302949 GCCCATTGTGACCAGCCTA 59.697 57.895 0.00 0.00 0.00 3.93
757 778 0.323360 GCCCATTGTGACCAGCCTAA 60.323 55.000 0.00 0.00 0.00 2.69
758 779 1.755179 CCCATTGTGACCAGCCTAAG 58.245 55.000 0.00 0.00 0.00 2.18
1104 3240 2.092904 ATCACCCACCAACCCCCAAG 62.093 60.000 0.00 0.00 0.00 3.61
1305 3463 3.771577 GGTCATAACCCTAGGATGTGG 57.228 52.381 11.48 0.00 39.93 4.17
1311 3469 2.950990 ACCCTAGGATGTGGTCTCTT 57.049 50.000 11.48 0.00 0.00 2.85
1314 3472 4.695606 ACCCTAGGATGTGGTCTCTTTTA 58.304 43.478 11.48 0.00 0.00 1.52
1367 3527 3.486542 GCATTGAACTTCTCTGGCGAATC 60.487 47.826 0.00 0.00 0.00 2.52
1371 3531 0.737715 ACTTCTCTGGCGAATCGTGC 60.738 55.000 4.07 0.00 0.00 5.34
1375 3535 0.737367 CTCTGGCGAATCGTGCTGAA 60.737 55.000 4.07 0.00 0.00 3.02
1391 3551 1.938577 CTGAATTCAGCACGATCCCTG 59.061 52.381 21.96 0.00 37.15 4.45
1624 3792 3.863681 GCAAAAAGCATGACCACGA 57.136 47.368 0.00 0.00 44.79 4.35
1703 3871 7.035612 AGGAAAGTTTTCTGTTGTGAATTGAC 58.964 34.615 0.00 0.00 37.35 3.18
1816 3984 6.156256 TGTGAGTTATTAGTCCTAATGCCACT 59.844 38.462 9.33 8.29 36.52 4.00
1943 4112 1.537202 GCTTTGAGTGTAAGCTGGTGG 59.463 52.381 0.00 0.00 43.56 4.61
1958 4127 2.972021 CTGGTGGTTTGAAGGGGAATTT 59.028 45.455 0.00 0.00 0.00 1.82
2247 4416 1.269309 CGGAGGCCTGATTTACTCTCG 60.269 57.143 12.00 0.00 0.00 4.04
2712 5111 3.138304 TGTCACATGTCAGTGCCTAAAC 58.862 45.455 0.00 0.00 39.35 2.01
2933 5332 2.752030 TCAGTGGGGATCTAGAACTGG 58.248 52.381 17.44 4.13 38.97 4.00
3225 5624 1.673033 GCGAGTGGTACTGTCAATGCT 60.673 52.381 0.00 0.00 0.00 3.79
3589 5990 3.006940 ACGTGTGTGAATTTCTGTGTGT 58.993 40.909 0.00 0.00 0.00 3.72
4964 7443 1.869767 CTTGTTGTGCAGACCTCACTC 59.130 52.381 0.00 0.00 35.58 3.51
5002 7481 1.302511 GGCGTGGAGGCTTCTTGAA 60.303 57.895 0.00 0.00 42.90 2.69
5555 8035 7.633116 TCCAACTGGTTTTATGTGGTTTAAACC 60.633 37.037 27.42 27.42 46.12 3.27
5566 8046 3.062122 GGTTTAAACCGTGGATCCTGA 57.938 47.619 21.22 0.00 39.66 3.86
5616 8096 9.232473 GGTCTAGGAACTTCAATGAAATTTACT 57.768 33.333 6.87 6.87 41.75 2.24
6116 8607 6.177610 CCCTTTATACACTAAAGCAGGTGAA 58.822 40.000 0.00 0.00 37.22 3.18
6117 8608 6.828785 CCCTTTATACACTAAAGCAGGTGAAT 59.171 38.462 0.00 0.00 37.22 2.57
6185 8677 3.514706 TGACAAGTGCAAAATATGGGCAT 59.485 39.130 0.00 0.00 40.05 4.40
6200 8692 1.070601 GGGCATTGGAAAACAGCAACT 59.929 47.619 0.00 0.00 0.00 3.16
6206 8698 6.648725 GGCATTGGAAAACAGCAACTAAAATA 59.351 34.615 0.00 0.00 0.00 1.40
6207 8699 7.172361 GGCATTGGAAAACAGCAACTAAAATAA 59.828 33.333 0.00 0.00 0.00 1.40
6208 8700 8.720562 GCATTGGAAAACAGCAACTAAAATAAT 58.279 29.630 0.00 0.00 0.00 1.28
6437 9036 1.881973 CTTGAGTAAGCAAGCCAGCAA 59.118 47.619 0.55 0.00 38.85 3.91
6438 9037 1.527034 TGAGTAAGCAAGCCAGCAAG 58.473 50.000 0.55 0.00 36.85 4.01
6439 9038 0.169894 GAGTAAGCAAGCCAGCAAGC 59.830 55.000 0.55 0.00 36.85 4.01
6440 9039 1.213799 GTAAGCAAGCCAGCAAGCC 59.786 57.895 0.55 0.00 36.85 4.35
6441 9040 1.228521 TAAGCAAGCCAGCAAGCCA 60.229 52.632 0.55 0.00 36.85 4.75
6442 9041 1.246056 TAAGCAAGCCAGCAAGCCAG 61.246 55.000 0.55 0.00 36.85 4.85
6443 9042 4.736896 GCAAGCCAGCAAGCCAGC 62.737 66.667 0.00 0.00 0.00 4.85
6445 9044 2.989824 AAGCCAGCAAGCCAGCAG 60.990 61.111 6.67 0.00 36.85 4.24
6446 9045 3.502621 AAGCCAGCAAGCCAGCAGA 62.503 57.895 6.67 0.00 36.85 4.26
6447 9046 2.987547 GCCAGCAAGCCAGCAGAA 60.988 61.111 0.55 0.00 36.85 3.02
6448 9047 2.567497 GCCAGCAAGCCAGCAGAAA 61.567 57.895 0.55 0.00 36.85 2.52
6452 9051 0.672342 AGCAAGCCAGCAGAAAGTTG 59.328 50.000 0.55 0.00 36.85 3.16
6454 9053 1.608590 GCAAGCCAGCAGAAAGTTGTA 59.391 47.619 0.00 0.00 0.00 2.41
6455 9054 2.605580 GCAAGCCAGCAGAAAGTTGTAC 60.606 50.000 0.00 0.00 0.00 2.90
6457 9056 4.065088 CAAGCCAGCAGAAAGTTGTACTA 58.935 43.478 0.00 0.00 0.00 1.82
6458 9057 4.351874 AGCCAGCAGAAAGTTGTACTAA 57.648 40.909 0.00 0.00 0.00 2.24
6459 9058 4.319177 AGCCAGCAGAAAGTTGTACTAAG 58.681 43.478 0.00 0.00 0.00 2.18
6461 9060 4.319177 CCAGCAGAAAGTTGTACTAAGCT 58.681 43.478 0.00 0.00 0.00 3.74
6462 9061 4.757149 CCAGCAGAAAGTTGTACTAAGCTT 59.243 41.667 3.48 3.48 0.00 3.74
6464 9063 5.466728 CAGCAGAAAGTTGTACTAAGCTTGA 59.533 40.000 9.86 0.00 0.00 3.02
6465 9064 5.698545 AGCAGAAAGTTGTACTAAGCTTGAG 59.301 40.000 9.86 5.36 0.00 3.02
6466 9065 5.696724 GCAGAAAGTTGTACTAAGCTTGAGA 59.303 40.000 9.86 0.00 0.00 3.27
6467 9066 6.346999 GCAGAAAGTTGTACTAAGCTTGAGAC 60.347 42.308 9.86 4.39 0.00 3.36
6468 9067 6.701841 CAGAAAGTTGTACTAAGCTTGAGACA 59.298 38.462 9.86 7.12 0.00 3.41
6469 9068 6.702282 AGAAAGTTGTACTAAGCTTGAGACAC 59.298 38.462 9.86 7.18 0.00 3.67
6472 9071 7.286215 AGTTGTACTAAGCTTGAGACACTTA 57.714 36.000 9.86 0.00 0.00 2.24
6474 9073 8.368668 AGTTGTACTAAGCTTGAGACACTTATT 58.631 33.333 9.86 0.00 0.00 1.40
6475 9074 8.989980 GTTGTACTAAGCTTGAGACACTTATTT 58.010 33.333 9.86 0.00 0.00 1.40
6477 9076 8.988934 TGTACTAAGCTTGAGACACTTATTTTG 58.011 33.333 9.86 0.00 0.00 2.44
6478 9077 7.440523 ACTAAGCTTGAGACACTTATTTTGG 57.559 36.000 9.86 0.00 0.00 3.28
6479 9078 5.712152 AAGCTTGAGACACTTATTTTGGG 57.288 39.130 0.00 0.00 0.00 4.12
6480 9079 4.985538 AGCTTGAGACACTTATTTTGGGA 58.014 39.130 0.00 0.00 0.00 4.37
6481 9080 4.762251 AGCTTGAGACACTTATTTTGGGAC 59.238 41.667 0.00 0.00 0.00 4.46
6482 9081 4.378459 GCTTGAGACACTTATTTTGGGACG 60.378 45.833 0.00 0.00 0.00 4.79
6483 9082 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
6484 9083 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
6485 9084 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
6486 9085 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
6487 9086 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
6488 9087 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
6489 9088 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
6490 9089 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
6666 9268 5.070685 GGAACCCCCAATCATTATCTGTAC 58.929 45.833 0.00 0.00 34.14 2.90
6674 9276 7.037297 CCCCAATCATTATCTGTACTTCCCTAT 60.037 40.741 0.00 0.00 0.00 2.57
6790 9392 4.328536 TGAAACTGTGTATAAACGGGCAT 58.671 39.130 6.82 0.00 0.00 4.40
7280 9884 1.807142 GCTGTGCTGGTAGGTTTTCTC 59.193 52.381 0.00 0.00 0.00 2.87
7291 9895 0.322546 GGTTTTCTCTGGCCGGTCAT 60.323 55.000 10.40 0.00 0.00 3.06
7302 9906 3.497879 CGGTCATTCGGAAAGGGC 58.502 61.111 0.00 0.00 0.00 5.19
7309 9913 1.740025 CATTCGGAAAGGGCAGAGTTC 59.260 52.381 0.00 0.00 0.00 3.01
7357 9961 5.689383 CTGTAAGTTTGTAACAGGCATGT 57.311 39.130 0.00 0.00 43.15 3.21
7429 10034 6.044512 AGTTTTAGCTACAAACACAACTCG 57.955 37.500 22.31 0.00 36.71 4.18
7560 10281 5.409826 CACTTGAGAGTTTGTATGAGTTCCC 59.590 44.000 0.00 0.00 32.54 3.97
7589 10310 5.245977 CCCCACTATTTCCTTTGTTCACAAT 59.754 40.000 0.00 0.00 35.55 2.71
7667 10388 3.876914 TGTGTGTTCACTCATTTCAGTCC 59.123 43.478 4.59 0.00 44.14 3.85
7786 10589 9.219603 TCTGAGTTTTATACTGAACTGAAATGG 57.780 33.333 0.00 0.00 37.17 3.16
7787 10590 8.918202 TGAGTTTTATACTGAACTGAAATGGT 57.082 30.769 0.00 0.00 37.17 3.55
7788 10591 8.783093 TGAGTTTTATACTGAACTGAAATGGTG 58.217 33.333 0.00 0.00 37.17 4.17
7789 10592 8.691661 AGTTTTATACTGAACTGAAATGGTGT 57.308 30.769 0.00 0.00 34.96 4.16
7790 10593 8.567948 AGTTTTATACTGAACTGAAATGGTGTG 58.432 33.333 0.00 0.00 34.96 3.82
8034 10869 9.256477 TGAAATAGTCAACTACACAGTAAACAG 57.744 33.333 0.00 0.00 33.48 3.16
8072 10907 7.015226 TCAACTACACACATCAACAAGAAAG 57.985 36.000 0.00 0.00 0.00 2.62
8073 10908 5.424121 ACTACACACATCAACAAGAAAGC 57.576 39.130 0.00 0.00 0.00 3.51
8074 10909 4.881273 ACTACACACATCAACAAGAAAGCA 59.119 37.500 0.00 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 6.065976 TGTTGGGAGATGTGTCTTGATTAT 57.934 37.500 0.00 0.00 33.97 1.28
52 53 1.046472 CGGTGCTATAGGGTGGGTGA 61.046 60.000 1.04 0.00 0.00 4.02
60 61 2.803492 GCAAGGTCTTCGGTGCTATAGG 60.803 54.545 1.04 0.00 34.13 2.57
125 127 2.787601 TTCCGACGGATATGTGTAGC 57.212 50.000 19.12 0.00 0.00 3.58
126 128 2.987149 GCATTCCGACGGATATGTGTAG 59.013 50.000 25.92 11.69 0.00 2.74
128 130 1.540363 GGCATTCCGACGGATATGTGT 60.540 52.381 25.92 8.09 0.00 3.72
139 141 1.906574 AGAAGTACCTTGGCATTCCGA 59.093 47.619 0.00 0.00 34.14 4.55
200 202 9.784531 CCTAACAACATCAATGAAGAGGTATAT 57.215 33.333 0.00 0.00 31.49 0.86
237 239 2.789409 AGGTCCTCCATTTTCTTCCG 57.211 50.000 0.00 0.00 35.89 4.30
247 249 9.991011 AATGTATACATCGAGGAAGGTCCTCCA 62.991 44.444 18.52 6.41 46.66 3.86
248 250 7.700811 AATGTATACATCGAGGAAGGTCCTCC 61.701 46.154 18.52 2.30 46.66 4.30
249 251 5.244178 AATGTATACATCGAGGAAGGTCCTC 59.756 44.000 18.52 13.39 46.29 3.71
250 252 4.742012 ATGTATACATCGAGGAAGGTCCT 58.258 43.478 12.75 0.00 40.37 3.85
265 267 5.973565 GCAAATGCTTCAGGTCAATGTATAC 59.026 40.000 0.00 0.00 38.21 1.47
365 369 0.526524 TGTTTTCCAAAGCAACGCGG 60.527 50.000 12.47 0.00 0.00 6.46
499 520 0.896226 ACTCCTAAGTTCGACCAGCC 59.104 55.000 0.00 0.00 28.74 4.85
500 521 3.057033 TGTTACTCCTAAGTTCGACCAGC 60.057 47.826 0.00 0.00 36.92 4.85
501 522 4.778534 TGTTACTCCTAAGTTCGACCAG 57.221 45.455 0.00 0.00 36.92 4.00
502 523 4.768448 TGATGTTACTCCTAAGTTCGACCA 59.232 41.667 0.00 0.00 36.92 4.02
503 524 5.100943 GTGATGTTACTCCTAAGTTCGACC 58.899 45.833 0.00 0.00 36.92 4.79
504 525 5.572126 GTGTGATGTTACTCCTAAGTTCGAC 59.428 44.000 0.00 0.00 36.92 4.20
505 526 5.242171 TGTGTGATGTTACTCCTAAGTTCGA 59.758 40.000 0.00 0.00 36.92 3.71
506 527 5.345202 GTGTGTGATGTTACTCCTAAGTTCG 59.655 44.000 0.00 0.00 36.92 3.95
507 528 6.456501 AGTGTGTGATGTTACTCCTAAGTTC 58.543 40.000 0.00 0.00 36.92 3.01
508 529 6.420913 AGTGTGTGATGTTACTCCTAAGTT 57.579 37.500 0.00 0.00 36.92 2.66
509 530 6.041637 TGAAGTGTGTGATGTTACTCCTAAGT 59.958 38.462 0.00 0.00 39.66 2.24
510 531 6.455647 TGAAGTGTGTGATGTTACTCCTAAG 58.544 40.000 0.00 0.00 0.00 2.18
511 532 6.413783 TGAAGTGTGTGATGTTACTCCTAA 57.586 37.500 0.00 0.00 0.00 2.69
512 533 6.413783 TTGAAGTGTGTGATGTTACTCCTA 57.586 37.500 0.00 0.00 0.00 2.94
513 534 4.955811 TGAAGTGTGTGATGTTACTCCT 57.044 40.909 0.00 0.00 0.00 3.69
514 535 6.649141 TGTATTGAAGTGTGTGATGTTACTCC 59.351 38.462 0.00 0.00 0.00 3.85
515 536 7.652300 TGTATTGAAGTGTGTGATGTTACTC 57.348 36.000 0.00 0.00 0.00 2.59
516 537 7.715249 AGTTGTATTGAAGTGTGTGATGTTACT 59.285 33.333 0.00 0.00 0.00 2.24
517 538 7.861630 AGTTGTATTGAAGTGTGTGATGTTAC 58.138 34.615 0.00 0.00 0.00 2.50
518 539 8.445275 AAGTTGTATTGAAGTGTGTGATGTTA 57.555 30.769 0.00 0.00 0.00 2.41
519 540 6.942532 AGTTGTATTGAAGTGTGTGATGTT 57.057 33.333 0.00 0.00 0.00 2.71
520 541 6.942532 AAGTTGTATTGAAGTGTGTGATGT 57.057 33.333 0.00 0.00 0.00 3.06
521 542 6.142798 GCAAAGTTGTATTGAAGTGTGTGATG 59.857 38.462 0.00 0.00 0.00 3.07
522 543 6.039717 AGCAAAGTTGTATTGAAGTGTGTGAT 59.960 34.615 0.00 0.00 0.00 3.06
523 544 5.356751 AGCAAAGTTGTATTGAAGTGTGTGA 59.643 36.000 0.00 0.00 0.00 3.58
524 545 5.581605 AGCAAAGTTGTATTGAAGTGTGTG 58.418 37.500 0.00 0.00 0.00 3.82
525 546 5.835113 AGCAAAGTTGTATTGAAGTGTGT 57.165 34.783 0.00 0.00 0.00 3.72
526 547 7.862372 ACATAAGCAAAGTTGTATTGAAGTGTG 59.138 33.333 0.00 0.00 0.00 3.82
527 548 7.940850 ACATAAGCAAAGTTGTATTGAAGTGT 58.059 30.769 0.00 0.00 0.00 3.55
528 549 9.546909 CTACATAAGCAAAGTTGTATTGAAGTG 57.453 33.333 0.00 0.00 0.00 3.16
550 571 9.755804 CTCTCTCTTCATTAAATATGTGCTACA 57.244 33.333 0.00 0.00 0.00 2.74
551 572 9.202273 CCTCTCTCTTCATTAAATATGTGCTAC 57.798 37.037 0.00 0.00 0.00 3.58
552 573 8.928448 ACCTCTCTCTTCATTAAATATGTGCTA 58.072 33.333 0.00 0.00 0.00 3.49
553 574 7.714377 CACCTCTCTCTTCATTAAATATGTGCT 59.286 37.037 0.00 0.00 0.00 4.40
554 575 7.519649 GCACCTCTCTCTTCATTAAATATGTGC 60.520 40.741 0.00 0.00 35.67 4.57
555 576 7.714377 AGCACCTCTCTCTTCATTAAATATGTG 59.286 37.037 0.00 0.00 0.00 3.21
556 577 7.800092 AGCACCTCTCTCTTCATTAAATATGT 58.200 34.615 0.00 0.00 0.00 2.29
557 578 8.557864 CAAGCACCTCTCTCTTCATTAAATATG 58.442 37.037 0.00 0.00 0.00 1.78
558 579 8.270744 ACAAGCACCTCTCTCTTCATTAAATAT 58.729 33.333 0.00 0.00 0.00 1.28
559 580 7.550551 CACAAGCACCTCTCTCTTCATTAAATA 59.449 37.037 0.00 0.00 0.00 1.40
560 581 6.373774 CACAAGCACCTCTCTCTTCATTAAAT 59.626 38.462 0.00 0.00 0.00 1.40
561 582 5.702670 CACAAGCACCTCTCTCTTCATTAAA 59.297 40.000 0.00 0.00 0.00 1.52
562 583 5.240891 CACAAGCACCTCTCTCTTCATTAA 58.759 41.667 0.00 0.00 0.00 1.40
563 584 4.323028 CCACAAGCACCTCTCTCTTCATTA 60.323 45.833 0.00 0.00 0.00 1.90
564 585 3.558746 CCACAAGCACCTCTCTCTTCATT 60.559 47.826 0.00 0.00 0.00 2.57
565 586 2.027377 CCACAAGCACCTCTCTCTTCAT 60.027 50.000 0.00 0.00 0.00 2.57
566 587 1.345741 CCACAAGCACCTCTCTCTTCA 59.654 52.381 0.00 0.00 0.00 3.02
567 588 1.346068 ACCACAAGCACCTCTCTCTTC 59.654 52.381 0.00 0.00 0.00 2.87
568 589 1.428869 ACCACAAGCACCTCTCTCTT 58.571 50.000 0.00 0.00 0.00 2.85
569 590 2.300437 GTTACCACAAGCACCTCTCTCT 59.700 50.000 0.00 0.00 0.00 3.10
570 591 2.300437 AGTTACCACAAGCACCTCTCTC 59.700 50.000 0.00 0.00 0.00 3.20
571 592 2.330216 AGTTACCACAAGCACCTCTCT 58.670 47.619 0.00 0.00 0.00 3.10
572 593 2.841442 AGTTACCACAAGCACCTCTC 57.159 50.000 0.00 0.00 0.00 3.20
573 594 2.028020 GCTAGTTACCACAAGCACCTCT 60.028 50.000 0.00 0.00 35.05 3.69
574 595 2.028020 AGCTAGTTACCACAAGCACCTC 60.028 50.000 0.00 0.00 37.44 3.85
575 596 1.978580 AGCTAGTTACCACAAGCACCT 59.021 47.619 0.00 0.00 37.44 4.00
576 597 2.474410 AGCTAGTTACCACAAGCACC 57.526 50.000 0.00 0.00 37.44 5.01
577 598 4.566987 ACTTAGCTAGTTACCACAAGCAC 58.433 43.478 0.00 0.00 37.44 4.40
578 599 4.884668 ACTTAGCTAGTTACCACAAGCA 57.115 40.909 0.00 0.00 37.44 3.91
587 608 7.756722 GTGATGTTTCGGTAACTTAGCTAGTTA 59.243 37.037 10.09 10.09 45.22 2.24
589 610 6.098017 GTGATGTTTCGGTAACTTAGCTAGT 58.902 40.000 0.00 0.00 39.32 2.57
590 611 6.034683 GTGTGATGTTTCGGTAACTTAGCTAG 59.965 42.308 0.00 0.00 37.64 3.42
591 612 5.865552 GTGTGATGTTTCGGTAACTTAGCTA 59.134 40.000 0.00 0.00 37.64 3.32
592 613 4.689345 GTGTGATGTTTCGGTAACTTAGCT 59.311 41.667 0.00 0.00 37.64 3.32
593 614 4.449743 TGTGTGATGTTTCGGTAACTTAGC 59.550 41.667 0.00 0.00 37.64 3.09
594 615 5.694910 AGTGTGTGATGTTTCGGTAACTTAG 59.305 40.000 0.00 0.00 37.64 2.18
595 616 5.603596 AGTGTGTGATGTTTCGGTAACTTA 58.396 37.500 0.00 0.00 37.64 2.24
596 617 4.448210 AGTGTGTGATGTTTCGGTAACTT 58.552 39.130 0.00 0.00 37.64 2.66
597 618 4.056050 GAGTGTGTGATGTTTCGGTAACT 58.944 43.478 0.00 0.00 37.64 2.24
598 619 3.185797 GGAGTGTGTGATGTTTCGGTAAC 59.814 47.826 0.00 0.00 37.26 2.50
599 620 3.181464 TGGAGTGTGTGATGTTTCGGTAA 60.181 43.478 0.00 0.00 0.00 2.85
600 621 2.365941 TGGAGTGTGTGATGTTTCGGTA 59.634 45.455 0.00 0.00 0.00 4.02
601 622 1.140052 TGGAGTGTGTGATGTTTCGGT 59.860 47.619 0.00 0.00 0.00 4.69
602 623 1.877637 TGGAGTGTGTGATGTTTCGG 58.122 50.000 0.00 0.00 0.00 4.30
603 624 3.130633 TCTTGGAGTGTGTGATGTTTCG 58.869 45.455 0.00 0.00 0.00 3.46
604 625 5.163663 TGTTTCTTGGAGTGTGTGATGTTTC 60.164 40.000 0.00 0.00 0.00 2.78
605 626 4.704540 TGTTTCTTGGAGTGTGTGATGTTT 59.295 37.500 0.00 0.00 0.00 2.83
606 627 4.269183 TGTTTCTTGGAGTGTGTGATGTT 58.731 39.130 0.00 0.00 0.00 2.71
607 628 3.884895 TGTTTCTTGGAGTGTGTGATGT 58.115 40.909 0.00 0.00 0.00 3.06
608 629 4.898829 TTGTTTCTTGGAGTGTGTGATG 57.101 40.909 0.00 0.00 0.00 3.07
609 630 5.132502 TCATTGTTTCTTGGAGTGTGTGAT 58.867 37.500 0.00 0.00 0.00 3.06
610 631 4.522114 TCATTGTTTCTTGGAGTGTGTGA 58.478 39.130 0.00 0.00 0.00 3.58
611 632 4.336433 ACTCATTGTTTCTTGGAGTGTGTG 59.664 41.667 0.00 0.00 37.43 3.82
612 633 4.526970 ACTCATTGTTTCTTGGAGTGTGT 58.473 39.130 0.00 0.00 37.43 3.72
613 634 4.818546 AGACTCATTGTTTCTTGGAGTGTG 59.181 41.667 0.00 0.00 38.82 3.82
614 635 5.041191 AGACTCATTGTTTCTTGGAGTGT 57.959 39.130 0.00 0.00 38.82 3.55
615 636 8.660373 GTTATAGACTCATTGTTTCTTGGAGTG 58.340 37.037 0.00 0.00 38.82 3.51
616 637 7.824779 GGTTATAGACTCATTGTTTCTTGGAGT 59.175 37.037 0.00 0.00 41.22 3.85
617 638 8.043710 AGGTTATAGACTCATTGTTTCTTGGAG 58.956 37.037 0.00 0.00 0.00 3.86
618 639 7.918076 AGGTTATAGACTCATTGTTTCTTGGA 58.082 34.615 0.00 0.00 0.00 3.53
619 640 9.667107 TTAGGTTATAGACTCATTGTTTCTTGG 57.333 33.333 0.00 0.00 0.00 3.61
640 661 9.607988 TGTCATTCAACGATGTATTTATTAGGT 57.392 29.630 0.00 0.00 0.00 3.08
641 662 9.864034 GTGTCATTCAACGATGTATTTATTAGG 57.136 33.333 0.00 0.00 0.00 2.69
645 666 9.594478 TGTAGTGTCATTCAACGATGTATTTAT 57.406 29.630 0.00 0.00 0.00 1.40
646 667 8.989653 TGTAGTGTCATTCAACGATGTATTTA 57.010 30.769 0.00 0.00 0.00 1.40
647 668 7.899178 TGTAGTGTCATTCAACGATGTATTT 57.101 32.000 0.00 0.00 0.00 1.40
648 669 9.249457 CTATGTAGTGTCATTCAACGATGTATT 57.751 33.333 0.00 0.00 0.00 1.89
649 670 8.630037 TCTATGTAGTGTCATTCAACGATGTAT 58.370 33.333 0.00 0.00 0.00 2.29
650 671 7.992008 TCTATGTAGTGTCATTCAACGATGTA 58.008 34.615 0.00 0.00 0.00 2.29
651 672 6.863275 TCTATGTAGTGTCATTCAACGATGT 58.137 36.000 0.00 0.00 0.00 3.06
652 673 7.436376 ACATCTATGTAGTGTCATTCAACGATG 59.564 37.037 0.00 0.00 39.68 3.84
653 674 7.492524 ACATCTATGTAGTGTCATTCAACGAT 58.507 34.615 0.00 0.00 39.68 3.73
654 675 6.863275 ACATCTATGTAGTGTCATTCAACGA 58.137 36.000 0.00 0.00 39.68 3.85
655 676 7.254117 GGAACATCTATGTAGTGTCATTCAACG 60.254 40.741 0.00 0.00 40.80 4.10
656 677 7.766278 AGGAACATCTATGTAGTGTCATTCAAC 59.234 37.037 0.00 0.00 40.80 3.18
657 678 7.851228 AGGAACATCTATGTAGTGTCATTCAA 58.149 34.615 0.00 0.00 40.80 2.69
658 679 7.423844 AGGAACATCTATGTAGTGTCATTCA 57.576 36.000 0.00 0.00 40.80 2.57
659 680 7.868415 GGTAGGAACATCTATGTAGTGTCATTC 59.132 40.741 0.00 0.00 40.80 2.67
660 681 7.202011 GGGTAGGAACATCTATGTAGTGTCATT 60.202 40.741 0.00 0.00 40.80 2.57
661 682 6.267928 GGGTAGGAACATCTATGTAGTGTCAT 59.732 42.308 0.00 0.00 40.80 3.06
662 683 5.597182 GGGTAGGAACATCTATGTAGTGTCA 59.403 44.000 0.00 0.00 40.80 3.58
663 684 5.597182 TGGGTAGGAACATCTATGTAGTGTC 59.403 44.000 0.00 0.00 40.80 3.67
664 685 5.525484 TGGGTAGGAACATCTATGTAGTGT 58.475 41.667 0.00 0.00 40.80 3.55
665 686 6.672266 ATGGGTAGGAACATCTATGTAGTG 57.328 41.667 0.00 0.00 40.80 2.74
666 687 8.816894 CATAATGGGTAGGAACATCTATGTAGT 58.183 37.037 0.00 0.00 40.80 2.73
667 688 9.035890 TCATAATGGGTAGGAACATCTATGTAG 57.964 37.037 0.00 0.00 40.80 2.74
668 689 8.966155 TCATAATGGGTAGGAACATCTATGTA 57.034 34.615 0.00 0.00 40.80 2.29
669 690 7.872061 TCATAATGGGTAGGAACATCTATGT 57.128 36.000 0.00 0.00 44.20 2.29
670 691 7.826252 CCTTCATAATGGGTAGGAACATCTATG 59.174 40.741 0.00 0.00 29.71 2.23
671 692 7.517604 ACCTTCATAATGGGTAGGAACATCTAT 59.482 37.037 0.00 0.00 29.71 1.98
672 693 6.849697 ACCTTCATAATGGGTAGGAACATCTA 59.150 38.462 0.00 0.00 29.71 1.98
673 694 5.672194 ACCTTCATAATGGGTAGGAACATCT 59.328 40.000 0.00 0.00 29.71 2.90
674 695 5.941788 ACCTTCATAATGGGTAGGAACATC 58.058 41.667 0.00 0.00 29.71 3.06
675 696 5.994416 ACCTTCATAATGGGTAGGAACAT 57.006 39.130 0.00 0.00 29.71 2.71
676 697 6.494666 CTACCTTCATAATGGGTAGGAACA 57.505 41.667 9.71 0.00 45.09 3.18
682 703 9.664777 ACTATGTTACTACCTTCATAATGGGTA 57.335 33.333 0.00 0.00 34.86 3.69
683 704 8.562949 ACTATGTTACTACCTTCATAATGGGT 57.437 34.615 0.00 0.00 37.16 4.51
684 705 8.871125 AGACTATGTTACTACCTTCATAATGGG 58.129 37.037 0.00 0.00 0.00 4.00
690 711 9.710818 TTTCCTAGACTATGTTACTACCTTCAT 57.289 33.333 0.00 0.00 0.00 2.57
691 712 9.186837 CTTTCCTAGACTATGTTACTACCTTCA 57.813 37.037 0.00 0.00 0.00 3.02
692 713 9.187996 ACTTTCCTAGACTATGTTACTACCTTC 57.812 37.037 0.00 0.00 0.00 3.46
693 714 8.968969 CACTTTCCTAGACTATGTTACTACCTT 58.031 37.037 0.00 0.00 0.00 3.50
694 715 8.114743 ACACTTTCCTAGACTATGTTACTACCT 58.885 37.037 0.00 0.00 0.00 3.08
695 716 8.189460 CACACTTTCCTAGACTATGTTACTACC 58.811 40.741 0.00 0.00 0.00 3.18
696 717 8.738106 ACACACTTTCCTAGACTATGTTACTAC 58.262 37.037 0.00 0.00 0.00 2.73
697 718 8.874744 ACACACTTTCCTAGACTATGTTACTA 57.125 34.615 0.00 0.00 0.00 1.82
698 719 7.778185 ACACACTTTCCTAGACTATGTTACT 57.222 36.000 0.00 0.00 0.00 2.24
699 720 9.570488 CTTACACACTTTCCTAGACTATGTTAC 57.430 37.037 0.00 0.00 0.00 2.50
700 721 9.305555 ACTTACACACTTTCCTAGACTATGTTA 57.694 33.333 0.00 0.00 0.00 2.41
701 722 8.191534 ACTTACACACTTTCCTAGACTATGTT 57.808 34.615 0.00 0.00 0.00 2.71
702 723 7.778185 ACTTACACACTTTCCTAGACTATGT 57.222 36.000 0.00 0.00 0.00 2.29
713 734 9.595357 GCAAGAACTAATAACTTACACACTTTC 57.405 33.333 0.00 0.00 0.00 2.62
714 735 8.565416 GGCAAGAACTAATAACTTACACACTTT 58.435 33.333 0.00 0.00 0.00 2.66
715 736 7.174426 GGGCAAGAACTAATAACTTACACACTT 59.826 37.037 0.00 0.00 0.00 3.16
716 737 6.653740 GGGCAAGAACTAATAACTTACACACT 59.346 38.462 0.00 0.00 0.00 3.55
717 738 6.428771 TGGGCAAGAACTAATAACTTACACAC 59.571 38.462 0.00 0.00 0.00 3.82
718 739 6.535540 TGGGCAAGAACTAATAACTTACACA 58.464 36.000 0.00 0.00 0.00 3.72
719 740 7.625828 ATGGGCAAGAACTAATAACTTACAC 57.374 36.000 0.00 0.00 0.00 2.90
720 741 7.668052 ACAATGGGCAAGAACTAATAACTTACA 59.332 33.333 0.00 0.00 0.00 2.41
721 742 7.968405 CACAATGGGCAAGAACTAATAACTTAC 59.032 37.037 0.00 0.00 0.00 2.34
722 743 7.885922 TCACAATGGGCAAGAACTAATAACTTA 59.114 33.333 0.00 0.00 0.00 2.24
723 744 6.719370 TCACAATGGGCAAGAACTAATAACTT 59.281 34.615 0.00 0.00 0.00 2.66
724 745 6.151144 GTCACAATGGGCAAGAACTAATAACT 59.849 38.462 0.00 0.00 0.00 2.24
725 746 6.322491 GTCACAATGGGCAAGAACTAATAAC 58.678 40.000 0.00 0.00 0.00 1.89
726 747 5.417580 GGTCACAATGGGCAAGAACTAATAA 59.582 40.000 0.00 0.00 0.00 1.40
727 748 4.947388 GGTCACAATGGGCAAGAACTAATA 59.053 41.667 0.00 0.00 0.00 0.98
728 749 3.763897 GGTCACAATGGGCAAGAACTAAT 59.236 43.478 0.00 0.00 0.00 1.73
729 750 3.153919 GGTCACAATGGGCAAGAACTAA 58.846 45.455 0.00 0.00 0.00 2.24
730 751 2.107378 TGGTCACAATGGGCAAGAACTA 59.893 45.455 0.00 0.00 0.00 2.24
731 752 1.133513 TGGTCACAATGGGCAAGAACT 60.134 47.619 0.00 0.00 0.00 3.01
732 753 1.270550 CTGGTCACAATGGGCAAGAAC 59.729 52.381 0.00 0.00 0.00 3.01
733 754 1.619654 CTGGTCACAATGGGCAAGAA 58.380 50.000 0.00 0.00 0.00 2.52
734 755 0.895100 GCTGGTCACAATGGGCAAGA 60.895 55.000 0.00 0.00 0.00 3.02
735 756 1.588082 GCTGGTCACAATGGGCAAG 59.412 57.895 0.00 0.00 0.00 4.01
736 757 1.907807 GGCTGGTCACAATGGGCAA 60.908 57.895 0.00 0.00 0.00 4.52
737 758 1.496444 TAGGCTGGTCACAATGGGCA 61.496 55.000 0.00 0.00 0.00 5.36
738 759 0.323360 TTAGGCTGGTCACAATGGGC 60.323 55.000 0.00 0.00 0.00 5.36
739 760 1.281867 TCTTAGGCTGGTCACAATGGG 59.718 52.381 0.00 0.00 0.00 4.00
740 761 2.787473 TCTTAGGCTGGTCACAATGG 57.213 50.000 0.00 0.00 0.00 3.16
741 762 3.209410 GGATCTTAGGCTGGTCACAATG 58.791 50.000 0.00 0.00 0.00 2.82
742 763 2.846206 TGGATCTTAGGCTGGTCACAAT 59.154 45.455 0.00 0.00 0.00 2.71
743 764 2.265367 TGGATCTTAGGCTGGTCACAA 58.735 47.619 0.00 0.00 0.00 3.33
744 765 1.951209 TGGATCTTAGGCTGGTCACA 58.049 50.000 0.00 0.00 0.00 3.58
745 766 3.471680 GAATGGATCTTAGGCTGGTCAC 58.528 50.000 0.00 0.00 0.00 3.67
746 767 2.103094 CGAATGGATCTTAGGCTGGTCA 59.897 50.000 0.00 0.00 0.00 4.02
747 768 2.760374 CGAATGGATCTTAGGCTGGTC 58.240 52.381 0.00 0.00 0.00 4.02
748 769 1.202698 GCGAATGGATCTTAGGCTGGT 60.203 52.381 0.00 0.00 0.00 4.00
749 770 1.517242 GCGAATGGATCTTAGGCTGG 58.483 55.000 0.00 0.00 0.00 4.85
750 771 1.517242 GGCGAATGGATCTTAGGCTG 58.483 55.000 0.00 0.00 0.00 4.85
751 772 0.398318 GGGCGAATGGATCTTAGGCT 59.602 55.000 0.00 0.00 0.00 4.58
752 773 0.108585 TGGGCGAATGGATCTTAGGC 59.891 55.000 0.00 0.00 0.00 3.93
753 774 2.430465 CATGGGCGAATGGATCTTAGG 58.570 52.381 0.00 0.00 0.00 2.69
754 775 1.808945 GCATGGGCGAATGGATCTTAG 59.191 52.381 0.00 0.00 0.00 2.18
755 776 1.545428 GGCATGGGCGAATGGATCTTA 60.545 52.381 0.00 0.00 42.47 2.10
756 777 0.825010 GGCATGGGCGAATGGATCTT 60.825 55.000 0.00 0.00 42.47 2.40
757 778 1.228367 GGCATGGGCGAATGGATCT 60.228 57.895 0.00 0.00 42.47 2.75
758 779 3.359002 GGCATGGGCGAATGGATC 58.641 61.111 0.00 0.00 42.47 3.36
932 3068 2.488355 GCTGCCGCGTACAGTAGA 59.512 61.111 22.54 0.00 37.47 2.59
1305 3463 4.035909 TCCCACGCAAAAAGTAAAAGAGAC 59.964 41.667 0.00 0.00 0.00 3.36
1311 3469 1.957877 CCCTCCCACGCAAAAAGTAAA 59.042 47.619 0.00 0.00 0.00 2.01
1314 3472 1.106944 CACCCTCCCACGCAAAAAGT 61.107 55.000 0.00 0.00 0.00 2.66
1371 3531 1.938577 CAGGGATCGTGCTGAATTCAG 59.061 52.381 27.82 27.82 46.40 3.02
1375 3535 1.831106 TGTACAGGGATCGTGCTGAAT 59.169 47.619 0.00 0.00 0.00 2.57
1391 3551 5.463724 GCAGTAAATCTAGCAGTCCATGTAC 59.536 44.000 0.00 0.00 0.00 2.90
1593 3761 2.364002 GCTTTTTGCCAAACTACCCTCA 59.636 45.455 0.00 0.00 35.15 3.86
1616 3784 2.649034 GCTCCTTCGTCGTGGTCA 59.351 61.111 6.86 0.00 0.00 4.02
1624 3792 1.853963 ACAGTATCAGGCTCCTTCGT 58.146 50.000 0.00 0.00 0.00 3.85
1816 3984 4.433615 GAACTACGAATGCTCATTCTCCA 58.566 43.478 17.41 4.90 43.71 3.86
1943 4112 7.227049 TCATACTGAAAATTCCCCTTCAAAC 57.773 36.000 0.00 0.00 31.41 2.93
2136 4305 4.520874 TCAGGAGTCGATTAAGCTCTATGG 59.479 45.833 0.00 0.00 0.00 2.74
2150 4319 1.649664 CTGGCAGATTTCAGGAGTCG 58.350 55.000 9.42 0.00 0.00 4.18
2474 4643 7.600960 TGCAAAATACACTGCATGAGAAATAA 58.399 30.769 0.00 0.00 43.44 1.40
2712 5111 8.792830 TCAGGTAGTATTCCAAGAAATTTCTG 57.207 34.615 21.15 14.27 37.65 3.02
2899 5298 9.887862 AGATCCCCACTGAAAATTGATAAATAT 57.112 29.630 0.00 0.00 0.00 1.28
2933 5332 3.805971 AGCTCTTGAAAGCATTTTGTTGC 59.194 39.130 0.00 0.00 45.00 4.17
3108 5507 1.459592 CTTGGTTCTAAACTGCGACCG 59.540 52.381 0.00 0.00 33.07 4.79
3115 5514 8.540388 TGATACAGATTAGCTTGGTTCTAAACT 58.460 33.333 0.00 0.00 31.88 2.66
3116 5515 8.718102 TGATACAGATTAGCTTGGTTCTAAAC 57.282 34.615 0.00 0.00 30.76 2.01
3225 5624 4.471025 TCTTTCTGATGCAGATAAGACCCA 59.529 41.667 13.19 0.00 40.39 4.51
3492 5891 4.202367 GCTGGTACCAAGTGCTTATAGGAT 60.202 45.833 17.11 0.00 0.00 3.24
3493 5892 3.134081 GCTGGTACCAAGTGCTTATAGGA 59.866 47.826 17.11 0.00 0.00 2.94
3548 5949 4.680110 ACGTAAAAGAGACAAGACACATCG 59.320 41.667 0.00 0.00 0.00 3.84
4937 7416 2.027192 GGTCTGCACAACAAGGGATAGA 60.027 50.000 0.00 0.00 0.00 1.98
5002 7481 2.048023 CCATCTTGCGCCACCATGT 61.048 57.895 4.18 0.00 0.00 3.21
5155 7635 3.532155 CGAGGCGAGAGGAAGGGG 61.532 72.222 0.00 0.00 0.00 4.79
5555 8035 3.119137 TGATAACACAGTCAGGATCCACG 60.119 47.826 15.82 4.51 0.00 4.94
5616 8096 8.243426 GGACAAGCATGTTTCAACTTGAATATA 58.757 33.333 13.35 0.00 41.59 0.86
5632 8112 1.608055 TTGACTGGTGGACAAGCATG 58.392 50.000 0.00 0.00 35.27 4.06
5811 8302 1.403780 GCTGCCTGCAAAGAATGGAAG 60.404 52.381 0.00 0.00 42.31 3.46
6093 8584 7.865706 ATTCACCTGCTTTAGTGTATAAAGG 57.134 36.000 8.89 0.00 35.64 3.11
6116 8607 4.558496 CGTGGTGGTGATAGTTTGCAAAAT 60.558 41.667 17.11 17.11 0.00 1.82
6117 8608 3.243234 CGTGGTGGTGATAGTTTGCAAAA 60.243 43.478 14.67 0.00 0.00 2.44
6437 9036 2.938956 AGTACAACTTTCTGCTGGCT 57.061 45.000 0.00 0.00 0.00 4.75
6438 9037 3.120165 GCTTAGTACAACTTTCTGCTGGC 60.120 47.826 0.00 0.00 0.00 4.85
6439 9038 4.319177 AGCTTAGTACAACTTTCTGCTGG 58.681 43.478 0.00 0.00 0.00 4.85
6440 9039 5.466728 TCAAGCTTAGTACAACTTTCTGCTG 59.533 40.000 0.00 0.00 0.00 4.41
6441 9040 5.611374 TCAAGCTTAGTACAACTTTCTGCT 58.389 37.500 0.00 0.00 0.00 4.24
6442 9041 5.696724 TCTCAAGCTTAGTACAACTTTCTGC 59.303 40.000 0.00 0.00 0.00 4.26
6443 9042 6.701841 TGTCTCAAGCTTAGTACAACTTTCTG 59.298 38.462 0.00 0.00 0.00 3.02
6445 9044 6.702282 AGTGTCTCAAGCTTAGTACAACTTTC 59.298 38.462 0.00 0.00 0.00 2.62
6446 9045 6.583562 AGTGTCTCAAGCTTAGTACAACTTT 58.416 36.000 0.00 0.00 0.00 2.66
6447 9046 6.163135 AGTGTCTCAAGCTTAGTACAACTT 57.837 37.500 0.00 0.00 0.00 2.66
6448 9047 5.793030 AGTGTCTCAAGCTTAGTACAACT 57.207 39.130 0.00 0.00 0.00 3.16
6452 9051 8.443937 CCAAAATAAGTGTCTCAAGCTTAGTAC 58.556 37.037 0.00 0.00 0.00 2.73
6454 9053 6.431234 CCCAAAATAAGTGTCTCAAGCTTAGT 59.569 38.462 0.00 0.00 0.00 2.24
6455 9054 6.655003 TCCCAAAATAAGTGTCTCAAGCTTAG 59.345 38.462 0.00 0.00 0.00 2.18
6457 9056 5.241728 GTCCCAAAATAAGTGTCTCAAGCTT 59.758 40.000 0.00 0.00 0.00 3.74
6458 9057 4.762251 GTCCCAAAATAAGTGTCTCAAGCT 59.238 41.667 0.00 0.00 0.00 3.74
6459 9058 4.378459 CGTCCCAAAATAAGTGTCTCAAGC 60.378 45.833 0.00 0.00 0.00 4.01
6461 9060 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
6462 9061 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
6464 9063 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
6465 9064 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
6466 9065 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
6467 9066 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
6468 9067 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
6469 9068 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
6472 9071 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
6474 9073 2.852714 TATACTCCCTCCGTCCCAAA 57.147 50.000 0.00 0.00 0.00 3.28
6475 9074 2.605257 CATATACTCCCTCCGTCCCAA 58.395 52.381 0.00 0.00 0.00 4.12
6477 9076 0.896226 GCATATACTCCCTCCGTCCC 59.104 60.000 0.00 0.00 0.00 4.46
6478 9077 1.926108 AGCATATACTCCCTCCGTCC 58.074 55.000 0.00 0.00 0.00 4.79
6479 9078 5.464030 TTTAAGCATATACTCCCTCCGTC 57.536 43.478 0.00 0.00 0.00 4.79
6480 9079 5.881923 TTTTAAGCATATACTCCCTCCGT 57.118 39.130 0.00 0.00 0.00 4.69
6632 9234 1.641714 TGGGGGTTCCGGTAAATCAAT 59.358 47.619 0.00 0.00 38.76 2.57
6716 9318 2.949177 ACCTGTGTAAACAGCCATCA 57.051 45.000 7.61 0.00 36.46 3.07
6790 9392 1.409064 CTGGCTGGACGATAGCACTAA 59.591 52.381 11.16 0.00 42.88 2.24
7291 9895 0.320421 CGAACTCTGCCCTTTCCGAA 60.320 55.000 0.00 0.00 0.00 4.30
7302 9906 5.233988 ACTCCAGAATTTCTTCGAACTCTG 58.766 41.667 0.00 2.04 36.45 3.35
7357 9961 3.727726 ACAGTCGTTCATGTTCATGTCA 58.272 40.909 11.73 0.00 0.00 3.58
7641 10362 3.376859 TGAAATGAGTGAACACACACACC 59.623 43.478 7.16 1.59 42.45 4.16
7667 10388 9.923143 TGGATATTTCAATAAGGACTACATACG 57.077 33.333 0.00 0.00 0.00 3.06
7807 10610 7.394359 ACATGGCTAAAATAGTGTGAAGTCAAT 59.606 33.333 0.00 0.00 0.00 2.57
8034 10869 4.390297 GTGTAGTTGATGCAGAGGAGAAAC 59.610 45.833 0.00 0.00 0.00 2.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.