Multiple sequence alignment - TraesCS3D01G382200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G382200 chr3D 100.000 4860 0 0 1 4860 497909991 497905132 0.000000e+00 8975.0
1 TraesCS3D01G382200 chr3D 96.792 1434 23 2 1322 2735 497962098 497960668 0.000000e+00 2372.0
2 TraesCS3D01G382200 chr3D 98.336 721 11 1 2843 3562 497960667 497959947 0.000000e+00 1264.0
3 TraesCS3D01G382200 chr3D 88.877 962 54 31 3560 4486 497959815 497958872 0.000000e+00 1134.0
4 TraesCS3D01G382200 chr3D 91.562 640 43 9 3560 4191 498097126 498096490 0.000000e+00 872.0
5 TraesCS3D01G382200 chr3D 89.392 707 54 10 815 1505 497872603 497871902 0.000000e+00 870.0
6 TraesCS3D01G382200 chr3D 88.728 621 46 13 737 1340 497968021 497967408 0.000000e+00 737.0
7 TraesCS3D01G382200 chr3D 87.520 633 47 21 737 1354 498113677 498113062 0.000000e+00 702.0
8 TraesCS3D01G382200 chr3D 89.869 306 29 1 3560 3863 497870446 497870141 4.560000e-105 392.0
9 TraesCS3D01G382200 chr3D 84.029 407 43 17 2490 2887 570805635 570805242 5.940000e-99 372.0
10 TraesCS3D01G382200 chr3D 83.988 331 35 13 1617 1942 520222379 520222062 7.910000e-78 302.0
11 TraesCS3D01G382200 chr3D 96.667 180 5 1 4681 4860 392970203 392970025 1.020000e-76 298.0
12 TraesCS3D01G382200 chr3D 87.984 258 21 5 3865 4116 497870086 497869833 3.680000e-76 296.0
13 TraesCS3D01G382200 chr3D 85.252 278 29 7 2547 2818 520220953 520220682 4.790000e-70 276.0
14 TraesCS3D01G382200 chr3D 88.034 234 20 3 1323 1548 520222622 520222389 2.230000e-68 270.0
15 TraesCS3D01G382200 chr3D 84.074 270 18 10 3923 4185 520219407 520219156 2.260000e-58 237.0
16 TraesCS3D01G382200 chr3D 82.946 258 42 2 3301 3557 498097503 498097247 1.050000e-56 231.0
17 TraesCS3D01G382200 chr3D 85.253 217 18 7 2583 2785 498099607 498099391 1.370000e-50 211.0
18 TraesCS3D01G382200 chr3D 84.483 116 11 3 2047 2162 520221171 520221063 1.850000e-19 108.0
19 TraesCS3D01G382200 chr3D 83.186 113 16 3 3452 3562 520220504 520220393 3.100000e-17 100.0
20 TraesCS3D01G382200 chr3B 90.509 1296 65 22 1608 2878 658497830 658496568 0.000000e+00 1659.0
21 TraesCS3D01G382200 chr3B 92.943 836 31 10 2045 2878 658606978 658606169 0.000000e+00 1192.0
22 TraesCS3D01G382200 chr3B 85.836 1059 86 20 544 1547 658608288 658607239 0.000000e+00 1066.0
23 TraesCS3D01G382200 chr3B 89.233 743 46 18 3560 4292 659001789 659001071 0.000000e+00 898.0
24 TraesCS3D01G382200 chr3B 89.067 686 53 13 807 1479 658498797 658498121 0.000000e+00 832.0
25 TraesCS3D01G382200 chr3B 86.490 755 76 18 773 1509 685064634 685063888 0.000000e+00 806.0
26 TraesCS3D01G382200 chr3B 84.407 776 82 25 807 1548 658938714 658937944 0.000000e+00 726.0
27 TraesCS3D01G382200 chr3B 87.179 663 46 10 3560 4188 658936041 658935384 0.000000e+00 717.0
28 TraesCS3D01G382200 chr3B 82.311 848 81 41 737 1548 659071657 659070843 0.000000e+00 671.0
29 TraesCS3D01G382200 chr3B 91.395 430 26 7 3560 3984 659069001 659068578 3.260000e-161 579.0
30 TraesCS3D01G382200 chr3B 86.796 515 64 4 1 513 658902078 658901566 5.460000e-159 571.0
31 TraesCS3D01G382200 chr3B 94.118 306 16 1 3560 3863 658494598 658494293 9.530000e-127 464.0
32 TraesCS3D01G382200 chr3B 86.850 327 33 7 811 1131 659015055 659014733 1.660000e-94 357.0
33 TraesCS3D01G382200 chr3B 96.618 207 7 0 2881 3087 658606087 658605881 1.300000e-90 344.0
34 TraesCS3D01G382200 chr3B 87.580 314 17 11 3981 4292 659068498 659068205 1.300000e-90 344.0
35 TraesCS3D01G382200 chr3B 83.378 373 34 15 4304 4661 658935304 658934945 2.180000e-83 320.0
36 TraesCS3D01G382200 chr3B 88.593 263 25 3 3304 3562 658605124 658604863 1.020000e-81 315.0
37 TraesCS3D01G382200 chr3B 87.452 263 28 3 3304 3562 658494973 658494712 1.020000e-76 298.0
38 TraesCS3D01G382200 chr3B 83.333 348 32 12 2547 2882 659008303 659007970 1.020000e-76 298.0
39 TraesCS3D01G382200 chr3B 82.808 349 31 13 2547 2882 659070215 659069883 7.960000e-73 285.0
40 TraesCS3D01G382200 chr3B 87.826 230 19 6 3341 3562 659002148 659001920 1.340000e-65 261.0
41 TraesCS3D01G382200 chr3B 80.563 355 47 14 1615 1955 757925437 757925091 2.250000e-63 254.0
42 TraesCS3D01G382200 chr3B 80.620 258 45 4 3301 3553 659007585 659007328 1.380000e-45 195.0
43 TraesCS3D01G382200 chr3B 83.408 223 24 9 1746 1958 757924939 757924720 1.380000e-45 195.0
44 TraesCS3D01G382200 chr3B 87.582 153 14 4 4306 4454 659068163 659068012 6.470000e-39 172.0
45 TraesCS3D01G382200 chr3B 89.256 121 12 1 2042 2162 659008469 659008350 3.030000e-32 150.0
46 TraesCS3D01G382200 chr3B 80.928 194 31 5 4306 4496 658603915 658603725 1.090000e-31 148.0
47 TraesCS3D01G382200 chr3B 84.211 114 15 3 3450 3562 685063020 685062909 1.850000e-19 108.0
48 TraesCS3D01G382200 chr3B 100.000 48 0 0 2837 2884 658606150 658606103 6.700000e-14 89.8
49 TraesCS3D01G382200 chr3B 91.525 59 3 1 2348 2404 483362495 483362553 4.030000e-11 80.5
50 TraesCS3D01G382200 chr3B 97.059 34 1 0 2042 2075 659070466 659070433 1.890000e-04 58.4
51 TraesCS3D01G382200 chr3A 88.860 1167 72 12 807 1952 636389457 636390586 0.000000e+00 1382.0
52 TraesCS3D01G382200 chr3A 87.317 954 69 30 3560 4488 636392867 636393793 0.000000e+00 1044.0
53 TraesCS3D01G382200 chr3A 91.499 694 46 6 2881 3562 636157294 636157986 0.000000e+00 942.0
54 TraesCS3D01G382200 chr3A 89.300 757 46 17 3560 4292 636158117 636158862 0.000000e+00 917.0
55 TraesCS3D01G382200 chr3A 91.331 646 37 9 3560 4198 636400014 636400647 0.000000e+00 865.0
56 TraesCS3D01G382200 chr3A 89.118 680 61 6 2882 3550 636392069 636392746 0.000000e+00 833.0
57 TraesCS3D01G382200 chr3A 82.241 839 83 38 753 1548 636154807 636155622 0.000000e+00 664.0
58 TraesCS3D01G382200 chr3A 82.876 765 74 18 807 1548 636397647 636398377 6.860000e-178 634.0
59 TraesCS3D01G382200 chr3A 88.158 532 45 9 797 1316 636526286 636526811 6.910000e-173 617.0
60 TraesCS3D01G382200 chr3A 92.484 306 21 1 3560 3863 636535352 636535657 2.080000e-118 436.0
61 TraesCS3D01G382200 chr3A 91.724 290 15 2 2439 2727 636391329 636391610 1.270000e-105 394.0
62 TraesCS3D01G382200 chr3A 95.775 213 7 2 2676 2887 636156999 636157210 4.660000e-90 342.0
63 TraesCS3D01G382200 chr3A 87.770 278 23 7 2547 2818 655648699 655648427 1.020000e-81 315.0
64 TraesCS3D01G382200 chr3A 81.220 410 47 18 2487 2887 703900432 703900820 2.200000e-78 303.0
65 TraesCS3D01G382200 chr3A 81.006 358 56 8 3212 3562 636534869 636535221 1.720000e-69 274.0
66 TraesCS3D01G382200 chr3A 83.660 306 32 12 1642 1942 655650104 655649812 6.200000e-69 272.0
67 TraesCS3D01G382200 chr3A 95.679 162 5 1 2042 2201 636390613 636390774 4.830000e-65 259.0
68 TraesCS3D01G382200 chr3A 87.892 223 19 3 1323 1537 655650339 655650117 6.240000e-64 255.0
69 TraesCS3D01G382200 chr3A 89.418 189 16 3 4304 4488 636400773 636400961 8.130000e-58 235.0
70 TraesCS3D01G382200 chr3A 87.701 187 23 0 1319 1505 636533541 636533727 8.190000e-53 219.0
71 TraesCS3D01G382200 chr3A 93.793 145 6 3 2745 2887 636391882 636392025 1.060000e-51 215.0
72 TraesCS3D01G382200 chr3A 86.188 181 25 0 4306 4486 636158904 636159084 3.840000e-46 196.0
73 TraesCS3D01G382200 chr3A 85.027 187 24 3 3865 4050 636535712 636535895 2.310000e-43 187.0
74 TraesCS3D01G382200 chr3A 85.635 181 20 5 4305 4479 636536160 636536340 8.310000e-43 185.0
75 TraesCS3D01G382200 chr3A 82.328 232 24 7 3923 4151 655647215 655646998 8.310000e-43 185.0
76 TraesCS3D01G382200 chr3A 84.946 186 23 5 4304 4488 655646821 655646640 2.990000e-42 183.0
77 TraesCS3D01G382200 chr3A 90.517 116 10 1 2047 2162 636398739 636398853 8.430000e-33 152.0
78 TraesCS3D01G382200 chr3A 87.179 117 8 3 2046 2162 655648917 655648808 5.110000e-25 126.0
79 TraesCS3D01G382200 chr3A 100.000 33 0 0 4153 4185 655646913 655646881 1.460000e-05 62.1
80 TraesCS3D01G382200 chr7D 96.045 177 5 2 4681 4856 378908740 378908915 2.210000e-73 287.0
81 TraesCS3D01G382200 chr7D 84.916 179 27 0 4682 4860 571080363 571080185 1.070000e-41 182.0
82 TraesCS3D01G382200 chr2B 91.860 172 11 3 4690 4860 654352365 654352196 2.260000e-58 237.0
83 TraesCS3D01G382200 chr6A 90.698 172 13 3 4690 4860 17588932 17588763 4.890000e-55 226.0
84 TraesCS3D01G382200 chr4D 86.592 179 24 0 4682 4860 207706655 207706477 1.070000e-46 198.0
85 TraesCS3D01G382200 chr4D 92.079 101 8 0 1954 2054 252173704 252173804 5.070000e-30 143.0
86 TraesCS3D01G382200 chr1D 86.592 179 24 0 4681 4859 316339435 316339257 1.070000e-46 198.0
87 TraesCS3D01G382200 chr6D 85.876 177 23 2 4681 4856 87274954 87274779 2.310000e-43 187.0
88 TraesCS3D01G382200 chr5D 84.239 184 27 2 4678 4860 462797995 462798177 1.390000e-40 178.0
89 TraesCS3D01G382200 chr5D 92.000 100 8 0 1954 2053 331119029 331118930 1.820000e-29 141.0
90 TraesCS3D01G382200 chr2A 96.842 95 3 0 1950 2044 39327417 39327511 5.030000e-35 159.0
91 TraesCS3D01G382200 chr2A 96.739 92 3 0 1954 2045 632952993 632952902 2.340000e-33 154.0
92 TraesCS3D01G382200 chr6B 98.864 88 1 0 1951 2038 713833465 713833552 1.810000e-34 158.0
93 TraesCS3D01G382200 chr5A 98.851 87 1 0 1954 2040 393474466 393474380 6.510000e-34 156.0
94 TraesCS3D01G382200 chr7B 94.000 100 5 1 1947 2046 740996246 740996148 3.030000e-32 150.0
95 TraesCS3D01G382200 chr7B 91.525 59 3 1 2348 2404 716820442 716820500 4.030000e-11 80.5
96 TraesCS3D01G382200 chr5B 91.525 59 3 1 2348 2404 533049758 533049816 4.030000e-11 80.5
97 TraesCS3D01G382200 chr1B 91.525 59 3 1 2348 2404 672518119 672518061 4.030000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G382200 chr3D 497905132 497909991 4859 True 8975.000000 8975 100.000000 1 4860 1 chr3D.!!$R2 4859
1 TraesCS3D01G382200 chr3D 497958872 497962098 3226 True 1590.000000 2372 94.668333 1322 4486 3 chr3D.!!$R7 3164
2 TraesCS3D01G382200 chr3D 497967408 497968021 613 True 737.000000 737 88.728000 737 1340 1 chr3D.!!$R3 603
3 TraesCS3D01G382200 chr3D 498113062 498113677 615 True 702.000000 702 87.520000 737 1354 1 chr3D.!!$R4 617
4 TraesCS3D01G382200 chr3D 497869833 497872603 2770 True 519.333333 870 89.081667 815 4116 3 chr3D.!!$R6 3301
5 TraesCS3D01G382200 chr3D 498096490 498099607 3117 True 438.000000 872 86.587000 2583 4191 3 chr3D.!!$R8 1608
6 TraesCS3D01G382200 chr3D 520219156 520222622 3466 True 215.500000 302 84.836167 1323 4185 6 chr3D.!!$R9 2862
7 TraesCS3D01G382200 chr3B 658494293 658498797 4504 True 813.250000 1659 90.286500 807 3863 4 chr3B.!!$R3 3056
8 TraesCS3D01G382200 chr3B 658934945 658938714 3769 True 587.666667 726 84.988000 807 4661 3 chr3B.!!$R5 3854
9 TraesCS3D01G382200 chr3B 659001071 659002148 1077 True 579.500000 898 88.529500 3341 4292 2 chr3B.!!$R6 951
10 TraesCS3D01G382200 chr3B 658901566 658902078 512 True 571.000000 571 86.796000 1 513 1 chr3B.!!$R1 512
11 TraesCS3D01G382200 chr3B 658603725 658608288 4563 True 525.800000 1192 90.819667 544 4496 6 chr3B.!!$R4 3952
12 TraesCS3D01G382200 chr3B 685062909 685064634 1725 True 457.000000 806 85.350500 773 3562 2 chr3B.!!$R9 2789
13 TraesCS3D01G382200 chr3B 659068012 659071657 3645 True 351.566667 671 88.122500 737 4454 6 chr3B.!!$R8 3717
14 TraesCS3D01G382200 chr3B 757924720 757925437 717 True 224.500000 254 81.985500 1615 1958 2 chr3B.!!$R10 343
15 TraesCS3D01G382200 chr3B 659007328 659008469 1141 True 214.333333 298 84.403000 2042 3553 3 chr3B.!!$R7 1511
16 TraesCS3D01G382200 chr3A 636526286 636526811 525 False 617.000000 617 88.158000 797 1316 1 chr3A.!!$F1 519
17 TraesCS3D01G382200 chr3A 636154807 636159084 4277 False 612.200000 942 89.000600 753 4486 5 chr3A.!!$F3 3733
18 TraesCS3D01G382200 chr3A 636389457 636400961 11504 False 601.300000 1382 90.063300 807 4488 10 chr3A.!!$F4 3681
19 TraesCS3D01G382200 chr3A 636533541 636536340 2799 False 260.200000 436 86.370600 1319 4479 5 chr3A.!!$F5 3160

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
242 244 0.034198 GAGATTTAGGCCCTCCGAGC 59.966 60.0 0.00 0.00 37.47 5.03 F
325 327 0.037303 TGAGCTGGCCAAAGAGAAGG 59.963 55.0 7.01 0.00 0.00 3.46 F
463 465 0.038892 ATTGAGCTTGGCGTGCAAAG 60.039 50.0 4.56 4.56 0.00 2.77 F
509 511 0.108424 CGCTAGGAGCTTCAGCAAGT 60.108 55.0 14.36 0.00 45.16 3.16 F
530 532 0.176910 AAACAACCAAAAGGCCACGG 59.823 50.0 5.01 1.16 0.00 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2112 10960 1.112113 TCTCGGCACTCCCTGATTAC 58.888 55.000 0.00 0.00 0.00 1.89 R
2246 11102 4.020928 TCGTGGGAGCAGTAACAATCTAAA 60.021 41.667 0.00 0.00 0.00 1.85 R
2741 12328 3.088532 TGTTTCCAGTTGCAACAGAAGT 58.911 40.909 30.11 7.43 0.00 3.01 R
3557 17939 0.749454 GGCAGCCGGATCTTGTTCAT 60.749 55.000 5.05 0.00 0.00 2.57 R
3863 18551 4.314440 AACAAGCAGGCTCGCGGA 62.314 61.111 6.13 0.00 36.85 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 0.615331 CCAAGGAGTTGGCAGAGCTA 59.385 55.000 0.00 0.00 46.99 3.32
60 61 2.481289 AGGAGTTGGCAGAGCTAAAC 57.519 50.000 0.00 0.00 29.49 2.01
67 68 0.523519 GGCAGAGCTAAACCACAAGC 59.476 55.000 0.00 0.00 39.08 4.01
79 80 2.972505 ACAAGCTTGTGCGGTCCG 60.973 61.111 30.66 6.99 45.42 4.79
106 107 3.760684 GGACATGGATCTGCTGAAAAAGT 59.239 43.478 0.00 0.00 0.00 2.66
108 109 5.415701 GGACATGGATCTGCTGAAAAAGTAA 59.584 40.000 0.00 0.00 0.00 2.24
116 117 7.148018 GGATCTGCTGAAAAAGTAAATGGATCA 60.148 37.037 0.00 0.00 0.00 2.92
155 156 1.954927 GCTAGTGCCCGAGCTTAAAT 58.045 50.000 0.00 0.00 40.80 1.40
165 167 4.814771 GCCCGAGCTTAAATATGTTGTAGT 59.185 41.667 0.00 0.00 35.50 2.73
166 168 5.050295 GCCCGAGCTTAAATATGTTGTAGTC 60.050 44.000 0.00 0.00 35.50 2.59
204 206 6.403866 TTTAACAGAGGTGCATTTGATTGT 57.596 33.333 0.00 0.00 0.00 2.71
205 207 4.942761 AACAGAGGTGCATTTGATTGTT 57.057 36.364 0.00 0.00 0.00 2.83
223 225 1.956043 TTTTTAGCTGCTGCCACGG 59.044 52.632 13.43 0.00 40.80 4.94
224 226 0.536233 TTTTTAGCTGCTGCCACGGA 60.536 50.000 13.43 0.00 40.80 4.69
225 227 0.955428 TTTTAGCTGCTGCCACGGAG 60.955 55.000 13.43 0.00 40.80 4.63
226 228 1.826340 TTTAGCTGCTGCCACGGAGA 61.826 55.000 13.43 0.00 40.80 3.71
227 229 1.617018 TTAGCTGCTGCCACGGAGAT 61.617 55.000 13.43 0.00 40.80 2.75
228 230 1.617018 TAGCTGCTGCCACGGAGATT 61.617 55.000 13.43 0.00 40.80 2.40
229 231 2.042831 GCTGCTGCCACGGAGATTT 61.043 57.895 3.85 0.00 0.00 2.17
230 232 0.744414 GCTGCTGCCACGGAGATTTA 60.744 55.000 3.85 0.00 0.00 1.40
231 233 1.293924 CTGCTGCCACGGAGATTTAG 58.706 55.000 0.00 0.00 0.00 1.85
232 234 0.107703 TGCTGCCACGGAGATTTAGG 60.108 55.000 0.00 0.00 0.00 2.69
233 235 1.440145 GCTGCCACGGAGATTTAGGC 61.440 60.000 0.00 0.00 45.41 3.93
234 236 0.815615 CTGCCACGGAGATTTAGGCC 60.816 60.000 0.00 0.00 44.60 5.19
235 237 1.526225 GCCACGGAGATTTAGGCCC 60.526 63.158 0.00 0.00 39.42 5.80
236 238 1.984288 GCCACGGAGATTTAGGCCCT 61.984 60.000 0.00 0.00 39.42 5.19
237 239 0.106894 CCACGGAGATTTAGGCCCTC 59.893 60.000 0.00 0.00 0.00 4.30
238 240 0.106894 CACGGAGATTTAGGCCCTCC 59.893 60.000 13.50 13.50 42.24 4.30
240 242 2.836020 GGAGATTTAGGCCCTCCGA 58.164 57.895 8.99 0.00 37.35 4.55
241 243 0.682292 GGAGATTTAGGCCCTCCGAG 59.318 60.000 8.99 0.00 37.35 4.63
242 244 0.034198 GAGATTTAGGCCCTCCGAGC 59.966 60.000 0.00 0.00 37.47 5.03
243 245 0.399233 AGATTTAGGCCCTCCGAGCT 60.399 55.000 0.00 0.00 37.47 4.09
244 246 1.133136 AGATTTAGGCCCTCCGAGCTA 60.133 52.381 0.00 0.00 37.47 3.32
245 247 1.692519 GATTTAGGCCCTCCGAGCTAA 59.307 52.381 0.00 0.00 37.47 3.09
246 248 1.120530 TTTAGGCCCTCCGAGCTAAG 58.879 55.000 0.00 0.00 37.47 2.18
247 249 1.400530 TTAGGCCCTCCGAGCTAAGC 61.401 60.000 0.00 0.00 37.47 3.09
248 250 2.299727 TAGGCCCTCCGAGCTAAGCT 62.300 60.000 0.00 0.00 43.88 3.74
249 251 2.736826 GGCCCTCCGAGCTAAGCTT 61.737 63.158 3.48 3.48 39.88 3.74
250 252 1.400530 GGCCCTCCGAGCTAAGCTTA 61.401 60.000 5.94 5.94 39.88 3.09
251 253 0.464452 GCCCTCCGAGCTAAGCTTAA 59.536 55.000 7.74 0.00 39.88 1.85
252 254 1.134491 GCCCTCCGAGCTAAGCTTAAA 60.134 52.381 7.74 0.00 39.88 1.52
253 255 2.679930 GCCCTCCGAGCTAAGCTTAAAA 60.680 50.000 7.74 0.00 39.88 1.52
254 256 3.606687 CCCTCCGAGCTAAGCTTAAAAA 58.393 45.455 7.74 0.00 39.88 1.94
282 284 4.619931 GCAAGAAGCGAACATCAAAAAG 57.380 40.909 0.00 0.00 0.00 2.27
283 285 3.426525 GCAAGAAGCGAACATCAAAAAGG 59.573 43.478 0.00 0.00 0.00 3.11
284 286 4.610945 CAAGAAGCGAACATCAAAAAGGT 58.389 39.130 0.00 0.00 0.00 3.50
285 287 4.918810 AGAAGCGAACATCAAAAAGGTT 57.081 36.364 0.00 0.00 0.00 3.50
286 288 6.205784 CAAGAAGCGAACATCAAAAAGGTTA 58.794 36.000 0.00 0.00 0.00 2.85
287 289 5.758924 AGAAGCGAACATCAAAAAGGTTAC 58.241 37.500 0.00 0.00 0.00 2.50
288 290 5.298276 AGAAGCGAACATCAAAAAGGTTACA 59.702 36.000 0.00 0.00 0.00 2.41
289 291 5.508200 AGCGAACATCAAAAAGGTTACAA 57.492 34.783 0.00 0.00 0.00 2.41
290 292 5.278604 AGCGAACATCAAAAAGGTTACAAC 58.721 37.500 0.00 0.00 0.00 3.32
291 293 4.145756 GCGAACATCAAAAAGGTTACAACG 59.854 41.667 0.00 0.00 0.00 4.10
292 294 5.503498 CGAACATCAAAAAGGTTACAACGA 58.497 37.500 0.00 0.00 0.00 3.85
293 295 5.966503 CGAACATCAAAAAGGTTACAACGAA 59.033 36.000 0.00 0.00 0.00 3.85
294 296 6.140108 CGAACATCAAAAAGGTTACAACGAAG 59.860 38.462 0.00 0.00 0.00 3.79
295 297 6.687081 ACATCAAAAAGGTTACAACGAAGA 57.313 33.333 0.00 0.00 0.00 2.87
296 298 7.090953 ACATCAAAAAGGTTACAACGAAGAA 57.909 32.000 0.00 0.00 0.00 2.52
297 299 7.193595 ACATCAAAAAGGTTACAACGAAGAAG 58.806 34.615 0.00 0.00 0.00 2.85
298 300 6.126568 TCAAAAAGGTTACAACGAAGAAGG 57.873 37.500 0.00 0.00 0.00 3.46
299 301 4.563337 AAAAGGTTACAACGAAGAAGGC 57.437 40.909 0.00 0.00 0.00 4.35
300 302 2.180432 AGGTTACAACGAAGAAGGCC 57.820 50.000 0.00 0.00 0.00 5.19
301 303 1.418637 AGGTTACAACGAAGAAGGCCA 59.581 47.619 5.01 0.00 0.00 5.36
302 304 2.039879 AGGTTACAACGAAGAAGGCCAT 59.960 45.455 5.01 0.00 0.00 4.40
303 305 2.418976 GGTTACAACGAAGAAGGCCATC 59.581 50.000 5.01 1.19 0.00 3.51
304 306 2.004583 TACAACGAAGAAGGCCATCG 57.995 50.000 5.01 12.09 42.05 3.84
305 307 0.320374 ACAACGAAGAAGGCCATCGA 59.680 50.000 21.78 0.00 39.73 3.59
306 308 1.066143 ACAACGAAGAAGGCCATCGAT 60.066 47.619 21.78 11.00 39.73 3.59
307 309 1.328680 CAACGAAGAAGGCCATCGATG 59.671 52.381 18.76 18.76 39.73 3.84
308 310 0.824109 ACGAAGAAGGCCATCGATGA 59.176 50.000 26.86 0.00 39.73 2.92
309 311 1.202463 ACGAAGAAGGCCATCGATGAG 60.202 52.381 26.86 16.85 39.73 2.90
310 312 1.224965 GAAGAAGGCCATCGATGAGC 58.775 55.000 26.86 24.53 0.00 4.26
311 313 0.835941 AAGAAGGCCATCGATGAGCT 59.164 50.000 26.86 12.61 0.00 4.09
312 314 0.106335 AGAAGGCCATCGATGAGCTG 59.894 55.000 26.86 10.82 0.00 4.24
313 315 0.883814 GAAGGCCATCGATGAGCTGG 60.884 60.000 26.86 12.41 39.09 4.85
316 318 2.507452 CCATCGATGAGCTGGCCA 59.493 61.111 26.86 4.71 28.37 5.36
317 319 1.153107 CCATCGATGAGCTGGCCAA 60.153 57.895 26.86 0.00 28.37 4.52
318 320 0.749091 CCATCGATGAGCTGGCCAAA 60.749 55.000 26.86 0.00 28.37 3.28
319 321 0.661552 CATCGATGAGCTGGCCAAAG 59.338 55.000 21.02 0.00 0.00 2.77
320 322 0.543277 ATCGATGAGCTGGCCAAAGA 59.457 50.000 7.01 0.00 0.00 2.52
321 323 0.107993 TCGATGAGCTGGCCAAAGAG 60.108 55.000 7.01 0.00 0.00 2.85
322 324 0.107993 CGATGAGCTGGCCAAAGAGA 60.108 55.000 7.01 0.00 0.00 3.10
323 325 1.676916 CGATGAGCTGGCCAAAGAGAA 60.677 52.381 7.01 0.00 0.00 2.87
324 326 2.015587 GATGAGCTGGCCAAAGAGAAG 58.984 52.381 7.01 0.00 0.00 2.85
325 327 0.037303 TGAGCTGGCCAAAGAGAAGG 59.963 55.000 7.01 0.00 0.00 3.46
333 335 1.884235 CCAAAGAGAAGGCAAGTCGT 58.116 50.000 0.00 0.00 0.00 4.34
334 336 1.532868 CCAAAGAGAAGGCAAGTCGTG 59.467 52.381 0.00 0.00 0.00 4.35
335 337 1.532868 CAAAGAGAAGGCAAGTCGTGG 59.467 52.381 0.00 0.00 0.00 4.94
342 344 2.946762 GCAAGTCGTGGCAAGGAC 59.053 61.111 5.77 5.77 40.72 3.85
343 345 2.617274 GCAAGTCGTGGCAAGGACC 61.617 63.158 10.32 0.00 41.21 4.46
344 346 1.227823 CAAGTCGTGGCAAGGACCA 60.228 57.895 10.32 0.00 41.21 4.02
345 347 1.071471 AAGTCGTGGCAAGGACCAG 59.929 57.895 10.32 0.00 41.46 4.00
346 348 2.358737 GTCGTGGCAAGGACCAGG 60.359 66.667 2.29 0.00 45.05 4.45
347 349 4.329545 TCGTGGCAAGGACCAGGC 62.330 66.667 0.00 0.00 43.70 4.85
360 362 4.087892 CAGGCCCGGGTCACTGAG 62.088 72.222 30.48 7.54 32.86 3.35
363 365 4.083862 GCCCGGGTCACTGAGGTC 62.084 72.222 24.63 0.00 0.00 3.85
364 366 3.760035 CCCGGGTCACTGAGGTCG 61.760 72.222 14.18 0.00 0.00 4.79
365 367 2.675423 CCGGGTCACTGAGGTCGA 60.675 66.667 0.00 0.00 0.00 4.20
366 368 2.701780 CCGGGTCACTGAGGTCGAG 61.702 68.421 0.00 0.00 0.00 4.04
367 369 1.674651 CGGGTCACTGAGGTCGAGA 60.675 63.158 0.00 0.00 0.00 4.04
368 370 1.241990 CGGGTCACTGAGGTCGAGAA 61.242 60.000 0.00 0.00 0.00 2.87
369 371 0.966920 GGGTCACTGAGGTCGAGAAA 59.033 55.000 0.00 0.00 0.00 2.52
370 372 1.067495 GGGTCACTGAGGTCGAGAAAG 60.067 57.143 0.00 0.00 0.00 2.62
371 373 1.887198 GGTCACTGAGGTCGAGAAAGA 59.113 52.381 0.00 0.00 0.00 2.52
372 374 2.351932 GGTCACTGAGGTCGAGAAAGAC 60.352 54.545 0.00 0.00 40.25 3.01
380 382 2.371910 GTCGAGAAAGACCTGAAGGG 57.628 55.000 0.56 0.00 40.27 3.95
390 392 3.867723 CCTGAAGGGTCTATACGCG 57.132 57.895 3.53 3.53 43.08 6.01
391 393 0.318784 CCTGAAGGGTCTATACGCGC 60.319 60.000 5.73 0.00 43.08 6.86
392 394 0.384309 CTGAAGGGTCTATACGCGCA 59.616 55.000 5.73 0.00 43.08 6.09
393 395 0.818938 TGAAGGGTCTATACGCGCAA 59.181 50.000 5.73 0.00 43.08 4.85
394 396 1.206523 GAAGGGTCTATACGCGCAAC 58.793 55.000 5.73 0.00 43.08 4.17
405 407 3.276846 GCGCAACGTGACACCCTT 61.277 61.111 0.30 0.00 0.00 3.95
406 408 2.935955 CGCAACGTGACACCCTTC 59.064 61.111 0.00 0.00 0.00 3.46
407 409 1.885388 CGCAACGTGACACCCTTCA 60.885 57.895 0.00 0.00 0.00 3.02
408 410 1.433053 CGCAACGTGACACCCTTCAA 61.433 55.000 0.00 0.00 0.00 2.69
409 411 0.307760 GCAACGTGACACCCTTCAAG 59.692 55.000 0.00 0.00 0.00 3.02
410 412 1.948104 CAACGTGACACCCTTCAAGA 58.052 50.000 0.00 0.00 0.00 3.02
411 413 1.867233 CAACGTGACACCCTTCAAGAG 59.133 52.381 0.00 0.00 0.00 2.85
412 414 0.393077 ACGTGACACCCTTCAAGAGG 59.607 55.000 0.00 0.00 45.86 3.69
426 428 6.311055 CTTCAAGAGGACCAGAAAAAGAAG 57.689 41.667 0.00 0.00 0.00 2.85
427 429 4.718961 TCAAGAGGACCAGAAAAAGAAGG 58.281 43.478 0.00 0.00 0.00 3.46
428 430 4.166144 TCAAGAGGACCAGAAAAAGAAGGT 59.834 41.667 0.00 0.00 37.00 3.50
433 435 3.463944 GACCAGAAAAAGAAGGTCGTCA 58.536 45.455 0.00 0.00 40.89 4.35
434 436 3.875134 GACCAGAAAAAGAAGGTCGTCAA 59.125 43.478 0.00 0.00 40.89 3.18
435 437 3.877508 ACCAGAAAAAGAAGGTCGTCAAG 59.122 43.478 0.00 0.00 0.00 3.02
436 438 3.304057 CCAGAAAAAGAAGGTCGTCAAGC 60.304 47.826 0.00 0.00 0.00 4.01
437 439 3.561725 CAGAAAAAGAAGGTCGTCAAGCT 59.438 43.478 0.00 0.00 37.29 3.74
438 440 3.810386 AGAAAAAGAAGGTCGTCAAGCTC 59.190 43.478 0.00 0.00 33.60 4.09
439 441 1.784525 AAAGAAGGTCGTCAAGCTCG 58.215 50.000 0.00 0.00 33.60 5.03
440 442 0.959553 AAGAAGGTCGTCAAGCTCGA 59.040 50.000 0.00 0.00 33.60 4.04
441 443 0.523966 AGAAGGTCGTCAAGCTCGAG 59.476 55.000 8.45 8.45 37.99 4.04
442 444 0.522180 GAAGGTCGTCAAGCTCGAGA 59.478 55.000 18.75 0.00 37.99 4.04
443 445 0.959553 AAGGTCGTCAAGCTCGAGAA 59.040 50.000 18.75 0.00 37.99 2.87
444 446 0.959553 AGGTCGTCAAGCTCGAGAAA 59.040 50.000 18.75 0.00 37.99 2.52
445 447 1.546476 AGGTCGTCAAGCTCGAGAAAT 59.454 47.619 18.75 0.00 37.99 2.17
446 448 2.028930 AGGTCGTCAAGCTCGAGAAATT 60.029 45.455 18.75 4.26 37.99 1.82
447 449 2.092838 GGTCGTCAAGCTCGAGAAATTG 59.907 50.000 18.75 16.64 37.99 2.32
448 450 2.987149 GTCGTCAAGCTCGAGAAATTGA 59.013 45.455 18.75 18.61 37.99 2.57
449 451 3.060098 GTCGTCAAGCTCGAGAAATTGAG 59.940 47.826 18.75 14.65 37.99 3.02
455 457 2.821307 CTCGAGAAATTGAGCTTGGC 57.179 50.000 6.58 0.00 0.00 4.52
456 458 1.061711 CTCGAGAAATTGAGCTTGGCG 59.938 52.381 6.58 0.00 0.00 5.69
457 459 0.798776 CGAGAAATTGAGCTTGGCGT 59.201 50.000 0.00 0.00 0.00 5.68
458 460 1.464687 CGAGAAATTGAGCTTGGCGTG 60.465 52.381 0.00 0.00 0.00 5.34
459 461 0.242017 AGAAATTGAGCTTGGCGTGC 59.758 50.000 0.00 0.00 0.00 5.34
460 462 0.039256 GAAATTGAGCTTGGCGTGCA 60.039 50.000 4.46 0.00 0.00 4.57
461 463 0.388659 AAATTGAGCTTGGCGTGCAA 59.611 45.000 0.00 0.00 0.00 4.08
462 464 0.388659 AATTGAGCTTGGCGTGCAAA 59.611 45.000 0.00 0.00 0.00 3.68
463 465 0.038892 ATTGAGCTTGGCGTGCAAAG 60.039 50.000 4.56 4.56 0.00 2.77
464 466 1.100463 TTGAGCTTGGCGTGCAAAGA 61.100 50.000 13.10 0.00 0.00 2.52
465 467 1.208614 GAGCTTGGCGTGCAAAGAG 59.791 57.895 13.10 0.00 0.00 2.85
466 468 2.192608 GAGCTTGGCGTGCAAAGAGG 62.193 60.000 13.10 0.00 0.00 3.69
467 469 2.256461 CTTGGCGTGCAAAGAGGC 59.744 61.111 2.71 0.00 0.00 4.70
468 470 3.273080 CTTGGCGTGCAAAGAGGCC 62.273 63.158 2.71 0.00 45.42 5.19
471 473 3.741476 GCGTGCAAAGAGGCCCAG 61.741 66.667 0.00 0.00 0.00 4.45
472 474 2.032528 CGTGCAAAGAGGCCCAGA 59.967 61.111 0.00 0.00 0.00 3.86
473 475 2.328099 CGTGCAAAGAGGCCCAGAC 61.328 63.158 0.00 0.00 0.00 3.51
474 476 1.973812 GTGCAAAGAGGCCCAGACC 60.974 63.158 0.00 0.00 0.00 3.85
475 477 2.361737 GCAAAGAGGCCCAGACCC 60.362 66.667 0.00 0.00 0.00 4.46
476 478 3.170362 CAAAGAGGCCCAGACCCA 58.830 61.111 0.00 0.00 0.00 4.51
477 479 1.001641 CAAAGAGGCCCAGACCCAG 60.002 63.158 0.00 0.00 0.00 4.45
478 480 2.234296 AAAGAGGCCCAGACCCAGG 61.234 63.158 0.00 0.00 0.00 4.45
486 488 4.704833 CAGACCCAGGCCACGGTG 62.705 72.222 17.92 0.00 30.56 4.94
500 502 2.760385 GGTGGACCGCTAGGAGCT 60.760 66.667 4.75 0.00 39.60 4.09
501 503 2.359967 GGTGGACCGCTAGGAGCTT 61.360 63.158 4.75 0.00 39.60 3.74
502 504 1.142097 GTGGACCGCTAGGAGCTTC 59.858 63.158 0.00 0.00 39.60 3.86
503 505 1.304962 TGGACCGCTAGGAGCTTCA 60.305 57.895 0.00 0.00 39.60 3.02
504 506 1.323271 TGGACCGCTAGGAGCTTCAG 61.323 60.000 0.00 0.00 39.60 3.02
505 507 1.227118 GACCGCTAGGAGCTTCAGC 60.227 63.158 0.00 0.22 39.60 4.26
506 508 1.949847 GACCGCTAGGAGCTTCAGCA 61.950 60.000 14.36 0.00 41.84 4.41
507 509 1.219124 CCGCTAGGAGCTTCAGCAA 59.781 57.895 14.36 0.00 45.16 3.91
508 510 0.809241 CCGCTAGGAGCTTCAGCAAG 60.809 60.000 14.36 4.07 45.16 4.01
509 511 0.108424 CGCTAGGAGCTTCAGCAAGT 60.108 55.000 14.36 0.00 45.16 3.16
510 512 1.367659 GCTAGGAGCTTCAGCAAGTG 58.632 55.000 10.51 0.00 45.16 3.16
511 513 1.066573 GCTAGGAGCTTCAGCAAGTGA 60.067 52.381 10.51 0.00 45.16 3.41
512 514 2.613977 GCTAGGAGCTTCAGCAAGTGAA 60.614 50.000 10.51 0.00 43.26 3.18
513 515 2.645838 AGGAGCTTCAGCAAGTGAAA 57.354 45.000 0.75 0.00 44.83 2.69
514 516 2.225467 AGGAGCTTCAGCAAGTGAAAC 58.775 47.619 0.75 0.00 44.83 2.78
515 517 1.949525 GGAGCTTCAGCAAGTGAAACA 59.050 47.619 0.75 0.00 44.83 2.83
516 518 2.358898 GGAGCTTCAGCAAGTGAAACAA 59.641 45.455 0.75 0.00 44.83 2.83
517 519 3.366719 GAGCTTCAGCAAGTGAAACAAC 58.633 45.455 0.75 0.00 44.83 3.32
518 520 2.099756 AGCTTCAGCAAGTGAAACAACC 59.900 45.455 0.75 0.00 44.83 3.77
519 521 2.159254 GCTTCAGCAAGTGAAACAACCA 60.159 45.455 0.00 0.00 44.83 3.67
520 522 3.675775 GCTTCAGCAAGTGAAACAACCAA 60.676 43.478 0.00 0.00 44.83 3.67
521 523 4.493547 CTTCAGCAAGTGAAACAACCAAA 58.506 39.130 0.00 0.00 44.83 3.28
522 524 4.527509 TCAGCAAGTGAAACAACCAAAA 57.472 36.364 0.00 0.00 41.43 2.44
523 525 4.493547 TCAGCAAGTGAAACAACCAAAAG 58.506 39.130 0.00 0.00 41.43 2.27
524 526 3.618150 CAGCAAGTGAAACAACCAAAAGG 59.382 43.478 0.00 0.00 41.43 3.11
525 527 2.351418 GCAAGTGAAACAACCAAAAGGC 59.649 45.455 0.00 0.00 41.43 4.35
526 528 2.935849 CAAGTGAAACAACCAAAAGGCC 59.064 45.455 0.00 0.00 41.43 5.19
527 529 2.183679 AGTGAAACAACCAAAAGGCCA 58.816 42.857 5.01 0.00 41.43 5.36
528 530 2.093711 AGTGAAACAACCAAAAGGCCAC 60.094 45.455 5.01 0.00 41.43 5.01
529 531 1.134965 TGAAACAACCAAAAGGCCACG 60.135 47.619 5.01 0.00 0.00 4.94
530 532 0.176910 AAACAACCAAAAGGCCACGG 59.823 50.000 5.01 1.16 0.00 4.94
531 533 0.973496 AACAACCAAAAGGCCACGGT 60.973 50.000 5.01 1.93 0.00 4.83
532 534 1.067250 CAACCAAAAGGCCACGGTG 59.933 57.895 5.01 0.00 0.00 4.94
533 535 2.131067 AACCAAAAGGCCACGGTGG 61.131 57.895 22.87 22.87 41.55 4.61
534 536 2.203422 CCAAAAGGCCACGGTGGA 60.203 61.111 30.65 0.00 40.96 4.02
558 560 2.119847 TAGGAGCCCCCAAGTCCACT 62.120 60.000 0.00 0.00 37.41 4.00
561 563 3.971702 GCCCCCAAGTCCACTGCT 61.972 66.667 0.00 0.00 0.00 4.24
563 565 2.674380 CCCCAAGTCCACTGCTGC 60.674 66.667 0.00 0.00 0.00 5.25
580 582 3.884693 TGCTGCAGAGAGAAAAATGACAA 59.115 39.130 20.43 0.00 0.00 3.18
581 583 4.225208 GCTGCAGAGAGAAAAATGACAAC 58.775 43.478 20.43 0.00 0.00 3.32
587 589 4.214332 AGAGAGAAAAATGACAACGGCTTC 59.786 41.667 0.00 0.00 0.00 3.86
595 597 3.624326 TGACAACGGCTTCAATCTTTG 57.376 42.857 0.00 0.00 0.00 2.77
611 613 8.763049 TCAATCTTTGACGCCTGATTATATAG 57.237 34.615 0.00 0.00 34.08 1.31
621 623 8.912787 ACGCCTGATTATATAGAAATAAGACG 57.087 34.615 3.51 3.51 0.00 4.18
622 624 8.521176 ACGCCTGATTATATAGAAATAAGACGT 58.479 33.333 0.00 0.00 0.00 4.34
680 696 2.883386 GGAGCATGGAGAAATAAGCCAG 59.117 50.000 0.00 0.00 34.74 4.85
794 832 6.867662 AATGGAGTAGAATGAAATAAGGCG 57.132 37.500 0.00 0.00 0.00 5.52
824 878 4.916099 ACTAAAAATAACGACGCCTGAC 57.084 40.909 0.00 0.00 0.00 3.51
885 939 0.319211 CACACGCCTTAACCACTCGA 60.319 55.000 0.00 0.00 0.00 4.04
891 945 2.223745 GCCTTAACCACTCGACCAAAA 58.776 47.619 0.00 0.00 0.00 2.44
903 957 4.136517 TCGACCAAAACGTCTTTTATGC 57.863 40.909 0.00 0.00 0.00 3.14
914 969 4.202111 ACGTCTTTTATGCTTTTGGTGCTT 60.202 37.500 0.00 0.00 0.00 3.91
921 976 3.177997 TGCTTTTGGTGCTTCTTTTCC 57.822 42.857 0.00 0.00 0.00 3.13
934 992 4.275196 GCTTCTTTTCCTCTTGTAAACGGT 59.725 41.667 0.00 0.00 0.00 4.83
943 1002 4.159879 CCTCTTGTAAACGGTAGGACATCT 59.840 45.833 0.00 0.00 0.00 2.90
949 1008 2.537633 ACGGTAGGACATCTAACCCA 57.462 50.000 0.00 0.00 32.03 4.51
978 1059 1.151908 CGAAACCTTCCCCCACCAA 59.848 57.895 0.00 0.00 0.00 3.67
984 1065 1.228862 CTTCCCCCACCAACCAAGG 60.229 63.158 0.00 0.00 0.00 3.61
988 1069 3.294493 CCCACCAACCAAGGCACG 61.294 66.667 0.00 0.00 0.00 5.34
1003 1084 1.308069 GCACGGCAATCAGACCATGT 61.308 55.000 0.00 0.00 0.00 3.21
1337 9673 5.003804 AGCACGACCAATCTCAGTAAAAAT 58.996 37.500 0.00 0.00 0.00 1.82
1762 10377 7.698506 ACACATCAATCAAAGATTCAGACAT 57.301 32.000 0.00 0.00 0.00 3.06
1763 10378 7.535997 ACACATCAATCAAAGATTCAGACATG 58.464 34.615 0.00 0.00 0.00 3.21
1764 10379 6.972901 CACATCAATCAAAGATTCAGACATGG 59.027 38.462 0.00 0.00 0.00 3.66
2112 10960 1.142667 ACTTTTGCCAATTTGGTGGGG 59.857 47.619 16.62 6.64 40.46 4.96
2240 11096 7.337184 TGAAATCCATGCGTACTGGTTTATTTA 59.663 33.333 0.01 0.00 35.19 1.40
2241 11097 7.633193 AATCCATGCGTACTGGTTTATTTAA 57.367 32.000 0.01 0.00 35.19 1.52
2242 11098 7.817418 ATCCATGCGTACTGGTTTATTTAAT 57.183 32.000 0.01 0.00 35.19 1.40
2243 11099 7.633193 TCCATGCGTACTGGTTTATTTAATT 57.367 32.000 0.01 0.00 35.19 1.40
2244 11100 8.734218 TCCATGCGTACTGGTTTATTTAATTA 57.266 30.769 0.01 0.00 35.19 1.40
2245 11101 9.344772 TCCATGCGTACTGGTTTATTTAATTAT 57.655 29.630 0.01 0.00 35.19 1.28
2246 11102 9.959749 CCATGCGTACTGGTTTATTTAATTATT 57.040 29.630 0.00 0.00 0.00 1.40
2784 12380 9.729281 AAACAAGAATACTCGGTTTCCTTATTA 57.271 29.630 0.00 0.00 32.23 0.98
3400 17664 2.239402 TGTATGAGGCTGGCATCTGAAA 59.761 45.455 8.63 0.00 0.00 2.69
3403 17669 3.650281 TGAGGCTGGCATCTGAAAATA 57.350 42.857 8.63 0.00 0.00 1.40
3553 17935 4.331168 GCTATGAACAACTCTTGTGGCTAG 59.669 45.833 0.00 0.00 44.59 3.42
3557 17939 2.257207 ACAACTCTTGTGGCTAGGCTA 58.743 47.619 18.18 3.75 43.48 3.93
3863 18551 3.190079 CGTCCTCGTGACAATTGATCAT 58.810 45.455 13.59 0.00 44.71 2.45
3879 18620 4.087892 ATCCGCGAGCCTGCTTGT 62.088 61.111 8.23 0.00 0.00 3.16
4100 18943 3.423123 CCGTCGTTGTTTCTGAATGCTAC 60.423 47.826 0.00 0.00 0.00 3.58
4118 18961 3.002348 GCTACATCGGTGTTTCTATTGCC 59.998 47.826 6.64 0.00 39.77 4.52
4129 18972 3.500448 TTCTATTGCCACTGTGTTCCA 57.500 42.857 7.08 0.00 0.00 3.53
4220 19087 6.955851 ACACCCCTACTAAGTGTACAATAGAA 59.044 38.462 18.86 0.00 42.71 2.10
4293 19183 8.671921 CACTGTCTTTGTCATTTTATATCAGCT 58.328 33.333 0.00 0.00 0.00 4.24
4295 19185 9.499585 CTGTCTTTGTCATTTTATATCAGCTTG 57.500 33.333 0.00 0.00 0.00 4.01
4297 19187 9.495754 GTCTTTGTCATTTTATATCAGCTTGTC 57.504 33.333 0.00 0.00 0.00 3.18
4298 19188 9.230122 TCTTTGTCATTTTATATCAGCTTGTCA 57.770 29.630 0.00 0.00 0.00 3.58
4323 19243 0.882927 TACCTTCTGTGCGTGTTGCC 60.883 55.000 0.00 0.00 45.60 4.52
4339 19259 4.072131 TGTTGCCTGGAAGAGTTATTGAC 58.928 43.478 0.00 0.00 34.07 3.18
4441 19362 2.686816 CCACGGTGGGCGACATTTC 61.687 63.158 19.63 0.00 32.67 2.17
4442 19363 1.671054 CACGGTGGGCGACATTTCT 60.671 57.895 1.14 0.00 0.00 2.52
4444 19365 2.106683 CGGTGGGCGACATTTCTCC 61.107 63.158 1.14 0.00 0.00 3.71
4497 19456 1.898094 TGCAATGCACGCAGGAACT 60.898 52.632 2.72 0.00 32.58 3.01
4499 19458 0.730494 GCAATGCACGCAGGAACTTC 60.730 55.000 0.00 0.00 34.60 3.01
4500 19459 0.109597 CAATGCACGCAGGAACTTCC 60.110 55.000 0.00 0.00 34.60 3.46
4503 19462 1.600916 GCACGCAGGAACTTCCCTT 60.601 57.895 4.01 0.00 37.19 3.95
4508 19467 1.266989 CGCAGGAACTTCCCTTTGTTC 59.733 52.381 4.01 0.00 37.19 3.18
4509 19468 2.306847 GCAGGAACTTCCCTTTGTTCA 58.693 47.619 4.01 0.00 42.91 3.18
4510 19469 2.294512 GCAGGAACTTCCCTTTGTTCAG 59.705 50.000 4.01 2.03 42.91 3.02
4511 19470 2.887152 CAGGAACTTCCCTTTGTTCAGG 59.113 50.000 4.01 0.00 42.91 3.86
4512 19471 1.613925 GGAACTTCCCTTTGTTCAGGC 59.386 52.381 7.91 0.00 42.91 4.85
4513 19472 2.587522 GAACTTCCCTTTGTTCAGGCT 58.412 47.619 0.00 0.00 41.35 4.58
4514 19473 1.986882 ACTTCCCTTTGTTCAGGCTG 58.013 50.000 8.58 8.58 31.69 4.85
4515 19474 1.215423 ACTTCCCTTTGTTCAGGCTGT 59.785 47.619 15.27 0.00 31.69 4.40
4516 19475 2.441750 ACTTCCCTTTGTTCAGGCTGTA 59.558 45.455 15.27 1.01 31.69 2.74
4517 19476 3.074538 ACTTCCCTTTGTTCAGGCTGTAT 59.925 43.478 15.27 0.00 31.69 2.29
4518 19477 3.806949 TCCCTTTGTTCAGGCTGTATT 57.193 42.857 15.27 0.00 31.69 1.89
4519 19478 3.686016 TCCCTTTGTTCAGGCTGTATTC 58.314 45.455 15.27 4.45 31.69 1.75
4520 19479 3.073798 TCCCTTTGTTCAGGCTGTATTCA 59.926 43.478 15.27 6.95 31.69 2.57
4521 19480 3.826157 CCCTTTGTTCAGGCTGTATTCAA 59.174 43.478 15.27 12.16 31.69 2.69
4522 19481 4.280677 CCCTTTGTTCAGGCTGTATTCAAA 59.719 41.667 15.27 17.64 31.69 2.69
4523 19482 5.047092 CCCTTTGTTCAGGCTGTATTCAAAT 60.047 40.000 15.27 0.00 31.69 2.32
4524 19483 6.152661 CCCTTTGTTCAGGCTGTATTCAAATA 59.847 38.462 15.27 0.00 31.69 1.40
4525 19484 7.253422 CCTTTGTTCAGGCTGTATTCAAATAG 58.747 38.462 15.27 10.11 0.00 1.73
4526 19485 7.094205 CCTTTGTTCAGGCTGTATTCAAATAGT 60.094 37.037 15.27 0.00 0.00 2.12
4527 19486 7.759489 TTGTTCAGGCTGTATTCAAATAGTT 57.241 32.000 15.27 0.00 0.00 2.24
4567 19526 8.954950 AGTTCTTGTATTACTCAATCATCAGG 57.045 34.615 0.00 0.00 0.00 3.86
4568 19527 7.989741 AGTTCTTGTATTACTCAATCATCAGGG 59.010 37.037 0.00 0.00 0.00 4.45
4570 19529 8.089625 TCTTGTATTACTCAATCATCAGGGAA 57.910 34.615 0.00 0.00 0.00 3.97
4571 19530 8.717717 TCTTGTATTACTCAATCATCAGGGAAT 58.282 33.333 0.00 0.00 0.00 3.01
4572 19531 8.681486 TTGTATTACTCAATCATCAGGGAATG 57.319 34.615 0.00 0.00 0.00 2.67
4573 19532 6.712095 TGTATTACTCAATCATCAGGGAATGC 59.288 38.462 0.00 0.00 0.00 3.56
4575 19534 6.499106 TTACTCAATCATCAGGGAATGCTA 57.501 37.500 0.00 0.00 0.00 3.49
4576 19535 5.579753 ACTCAATCATCAGGGAATGCTAT 57.420 39.130 0.00 0.00 0.00 2.97
4577 19536 5.558818 ACTCAATCATCAGGGAATGCTATC 58.441 41.667 0.00 0.00 0.00 2.08
4592 19551 1.922570 CTATCACGTTCCGAACCTGG 58.077 55.000 5.67 0.00 0.00 4.45
4620 19579 2.480073 CCACACAGCAGTTTGAACTTGG 60.480 50.000 0.00 0.00 37.08 3.61
4627 19586 4.154918 CAGCAGTTTGAACTTGGGATCTAC 59.845 45.833 0.00 0.00 37.08 2.59
4651 19610 6.875195 ACCAAAATTTGCCAAATCATGACTAG 59.125 34.615 2.61 0.00 0.00 2.57
4657 19616 9.729281 AATTTGCCAAATCATGACTAGAAAAAT 57.271 25.926 2.61 0.00 0.00 1.82
4661 19620 9.241919 TGCCAAATCATGACTAGAAAAATTCTA 57.758 29.630 0.00 0.37 41.14 2.10
4687 19646 9.642343 AAGTACAGTGTATATGAGTAATCCTGA 57.358 33.333 6.21 0.00 0.00 3.86
4688 19647 9.815306 AGTACAGTGTATATGAGTAATCCTGAT 57.185 33.333 6.21 0.00 0.00 2.90
4707 19666 9.930158 ATCCTGATATAAGTATCTAGGGAGAAC 57.070 37.037 0.00 0.00 38.03 3.01
4708 19667 8.901841 TCCTGATATAAGTATCTAGGGAGAACA 58.098 37.037 0.00 0.00 38.03 3.18
4709 19668 9.707957 CCTGATATAAGTATCTAGGGAGAACAT 57.292 37.037 0.00 0.00 38.03 2.71
4713 19672 9.707957 ATATAAGTATCTAGGGAGAACATGAGG 57.292 37.037 0.00 0.00 34.61 3.86
4714 19673 4.156477 AGTATCTAGGGAGAACATGAGGC 58.844 47.826 0.00 0.00 34.61 4.70
4715 19674 2.856760 TCTAGGGAGAACATGAGGCT 57.143 50.000 0.00 0.00 0.00 4.58
4716 19675 3.121929 TCTAGGGAGAACATGAGGCTT 57.878 47.619 0.00 0.00 0.00 4.35
4717 19676 3.034635 TCTAGGGAGAACATGAGGCTTC 58.965 50.000 0.00 0.00 0.00 3.86
4718 19677 1.963985 AGGGAGAACATGAGGCTTCT 58.036 50.000 0.00 0.00 0.00 2.85
4719 19678 1.836802 AGGGAGAACATGAGGCTTCTC 59.163 52.381 12.98 12.98 41.15 2.87
4720 19679 8.804892 ATCTAGGGAGAACATGAGGCTTCTCA 62.805 46.154 19.66 4.58 42.90 3.27
4729 19688 1.480137 TGAGGCTTCTCAGAGCTTAGC 59.520 52.381 0.00 0.00 42.13 3.09
4730 19689 3.377933 GGCTTCTCAGAGCTTAGCC 57.622 57.895 17.26 17.26 43.96 3.93
4732 19691 1.650825 GCTTCTCAGAGCTTAGCCAC 58.349 55.000 0.00 0.00 39.57 5.01
4733 19692 1.206849 GCTTCTCAGAGCTTAGCCACT 59.793 52.381 0.00 0.00 39.57 4.00
4734 19693 2.738321 GCTTCTCAGAGCTTAGCCACTC 60.738 54.545 0.00 0.00 39.57 3.51
4735 19694 2.523325 TCTCAGAGCTTAGCCACTCT 57.477 50.000 0.00 0.00 44.06 3.24
4736 19695 2.374184 TCTCAGAGCTTAGCCACTCTC 58.626 52.381 0.00 0.00 41.31 3.20
4737 19696 1.065401 CTCAGAGCTTAGCCACTCTCG 59.935 57.143 0.00 0.00 41.31 4.04
4738 19697 0.102120 CAGAGCTTAGCCACTCTCGG 59.898 60.000 0.00 0.00 41.31 4.63
4746 19705 3.691342 CCACTCTCGGCCGTTGGA 61.691 66.667 27.15 19.63 0.00 3.53
4747 19706 2.579201 CACTCTCGGCCGTTGGAT 59.421 61.111 27.15 5.38 0.00 3.41
4748 19707 1.519455 CACTCTCGGCCGTTGGATC 60.519 63.158 27.15 0.00 0.00 3.36
4749 19708 2.278857 CTCTCGGCCGTTGGATCG 60.279 66.667 27.15 7.58 0.00 3.69
4750 19709 2.752640 TCTCGGCCGTTGGATCGA 60.753 61.111 27.15 8.41 0.00 3.59
4751 19710 2.076622 CTCTCGGCCGTTGGATCGAT 62.077 60.000 27.15 0.00 32.01 3.59
4752 19711 1.227263 CTCGGCCGTTGGATCGATT 60.227 57.895 27.15 0.00 32.01 3.34
4753 19712 0.810031 CTCGGCCGTTGGATCGATTT 60.810 55.000 27.15 0.00 32.01 2.17
4754 19713 0.391927 TCGGCCGTTGGATCGATTTT 60.392 50.000 27.15 0.00 0.00 1.82
4755 19714 0.450184 CGGCCGTTGGATCGATTTTT 59.550 50.000 19.50 0.00 0.00 1.94
4771 19730 2.961522 TTTTTGATGCGACTTCGTCC 57.038 45.000 0.00 0.00 42.22 4.79
4772 19731 0.787787 TTTTGATGCGACTTCGTCCG 59.212 50.000 0.00 0.00 42.22 4.79
4773 19732 0.319211 TTTGATGCGACTTCGTCCGT 60.319 50.000 0.00 0.00 42.22 4.69
4774 19733 0.731514 TTGATGCGACTTCGTCCGTC 60.732 55.000 0.00 0.00 42.22 4.79
4775 19734 1.872679 GATGCGACTTCGTCCGTCC 60.873 63.158 0.00 0.00 42.22 4.79
4776 19735 3.678717 ATGCGACTTCGTCCGTCCG 62.679 63.158 0.00 0.00 42.22 4.79
4777 19736 4.093952 GCGACTTCGTCCGTCCGA 62.094 66.667 0.00 0.00 42.22 4.55
4778 19737 2.789917 CGACTTCGTCCGTCCGAT 59.210 61.111 0.00 0.00 36.62 4.18
4779 19738 1.297451 CGACTTCGTCCGTCCGATC 60.297 63.158 0.00 0.00 36.62 3.69
4780 19739 1.703438 CGACTTCGTCCGTCCGATCT 61.703 60.000 0.00 0.00 36.62 2.75
4781 19740 0.027848 GACTTCGTCCGTCCGATCTC 59.972 60.000 0.00 0.00 36.62 2.75
4782 19741 1.011019 CTTCGTCCGTCCGATCTCG 60.011 63.158 0.00 0.00 36.62 4.04
4783 19742 2.968330 CTTCGTCCGTCCGATCTCGC 62.968 65.000 0.00 0.00 36.62 5.03
4784 19743 3.574445 CGTCCGTCCGATCTCGCT 61.574 66.667 0.00 0.00 38.18 4.93
4785 19744 2.024871 GTCCGTCCGATCTCGCTG 59.975 66.667 0.00 0.00 38.18 5.18
4786 19745 3.889044 TCCGTCCGATCTCGCTGC 61.889 66.667 0.00 0.00 38.18 5.25
4787 19746 3.893763 CCGTCCGATCTCGCTGCT 61.894 66.667 0.00 0.00 38.18 4.24
4788 19747 2.653448 CGTCCGATCTCGCTGCTG 60.653 66.667 0.00 0.00 38.18 4.41
4789 19748 2.279120 GTCCGATCTCGCTGCTGG 60.279 66.667 0.00 0.00 38.18 4.85
4790 19749 2.440247 TCCGATCTCGCTGCTGGA 60.440 61.111 0.00 0.00 38.18 3.86
4791 19750 2.279120 CCGATCTCGCTGCTGGAC 60.279 66.667 0.00 0.00 38.18 4.02
4792 19751 2.653448 CGATCTCGCTGCTGGACG 60.653 66.667 0.00 0.00 0.00 4.79
4793 19752 2.801421 GATCTCGCTGCTGGACGA 59.199 61.111 0.00 0.00 36.73 4.20
4794 19753 1.361993 GATCTCGCTGCTGGACGAT 59.638 57.895 0.00 0.00 37.72 3.73
4795 19754 0.662970 GATCTCGCTGCTGGACGATC 60.663 60.000 0.00 0.00 37.72 3.69
4796 19755 2.081425 ATCTCGCTGCTGGACGATCC 62.081 60.000 0.00 0.00 37.72 3.36
4797 19756 2.755876 TCGCTGCTGGACGATCCT 60.756 61.111 0.00 0.00 37.46 3.24
4798 19757 2.584418 CGCTGCTGGACGATCCTG 60.584 66.667 0.00 0.00 37.46 3.86
4799 19758 2.202987 GCTGCTGGACGATCCTGG 60.203 66.667 11.04 0.00 37.46 4.45
4800 19759 2.202987 CTGCTGGACGATCCTGGC 60.203 66.667 11.04 11.51 37.46 4.85
4801 19760 3.746949 CTGCTGGACGATCCTGGCC 62.747 68.421 0.00 0.00 37.46 5.36
4802 19761 4.899239 GCTGGACGATCCTGGCCG 62.899 72.222 0.00 6.75 37.46 6.13
4803 19762 3.461773 CTGGACGATCCTGGCCGT 61.462 66.667 12.46 12.46 42.17 5.68
4804 19763 3.000819 TGGACGATCCTGGCCGTT 61.001 61.111 13.51 0.95 39.30 4.44
4805 19764 2.511600 GGACGATCCTGGCCGTTG 60.512 66.667 13.51 0.00 39.30 4.10
4806 19765 2.511600 GACGATCCTGGCCGTTGG 60.512 66.667 13.51 0.00 39.30 3.77
4807 19766 3.000819 ACGATCCTGGCCGTTGGA 61.001 61.111 13.26 13.26 35.21 3.53
4808 19767 2.311688 GACGATCCTGGCCGTTGGAT 62.312 60.000 20.34 20.34 44.91 3.41
4810 19769 3.739922 ATCCTGGCCGTTGGATCA 58.260 55.556 16.19 0.00 38.60 2.92
4811 19770 1.998530 ATCCTGGCCGTTGGATCAA 59.001 52.632 16.19 0.00 38.60 2.57
4812 19771 0.331278 ATCCTGGCCGTTGGATCAAA 59.669 50.000 16.19 0.00 38.60 2.69
4813 19772 0.111446 TCCTGGCCGTTGGATCAAAA 59.889 50.000 7.73 0.00 0.00 2.44
4814 19773 0.965439 CCTGGCCGTTGGATCAAAAA 59.035 50.000 0.00 0.00 0.00 1.94
4837 19796 6.824305 AAAAGCACTGCTACAATGAATAGT 57.176 33.333 3.33 0.00 38.25 2.12
4838 19797 6.824305 AAAGCACTGCTACAATGAATAGTT 57.176 33.333 3.33 0.00 38.25 2.24
4839 19798 7.921786 AAAGCACTGCTACAATGAATAGTTA 57.078 32.000 3.33 0.00 38.25 2.24
4840 19799 7.545362 AAGCACTGCTACAATGAATAGTTAG 57.455 36.000 3.33 0.00 38.25 2.34
4841 19800 5.525378 AGCACTGCTACAATGAATAGTTAGC 59.475 40.000 0.21 0.00 36.99 3.09
4842 19801 5.525378 GCACTGCTACAATGAATAGTTAGCT 59.475 40.000 0.00 0.00 0.00 3.32
4843 19802 6.292596 GCACTGCTACAATGAATAGTTAGCTC 60.293 42.308 0.00 0.00 0.00 4.09
4844 19803 6.983307 CACTGCTACAATGAATAGTTAGCTCT 59.017 38.462 0.00 0.00 0.00 4.09
4845 19804 7.168972 CACTGCTACAATGAATAGTTAGCTCTC 59.831 40.741 0.00 0.00 0.00 3.20
4846 19805 6.209361 TGCTACAATGAATAGTTAGCTCTCG 58.791 40.000 0.00 0.00 0.00 4.04
4847 19806 5.117897 GCTACAATGAATAGTTAGCTCTCGC 59.882 44.000 0.00 0.00 0.00 5.03
4849 19808 5.285651 ACAATGAATAGTTAGCTCTCGCTC 58.714 41.667 0.00 0.00 45.15 5.03
4850 19809 3.610786 TGAATAGTTAGCTCTCGCTCG 57.389 47.619 0.00 0.00 45.15 5.03
4851 19810 2.943690 TGAATAGTTAGCTCTCGCTCGT 59.056 45.455 0.00 0.00 45.15 4.18
4852 19811 3.242772 TGAATAGTTAGCTCTCGCTCGTG 60.243 47.826 0.00 0.00 45.15 4.35
4853 19812 0.377554 TAGTTAGCTCTCGCTCGTGC 59.622 55.000 0.00 0.00 45.15 5.34
4854 19813 1.874466 GTTAGCTCTCGCTCGTGCC 60.874 63.158 3.52 0.00 45.15 5.01
4855 19814 2.340328 TTAGCTCTCGCTCGTGCCA 61.340 57.895 3.52 0.00 45.15 4.92
4856 19815 1.667154 TTAGCTCTCGCTCGTGCCAT 61.667 55.000 3.52 0.00 45.15 4.40
4857 19816 2.064723 TAGCTCTCGCTCGTGCCATC 62.065 60.000 3.52 0.00 45.15 3.51
4858 19817 2.653448 CTCTCGCTCGTGCCATCG 60.653 66.667 3.52 0.00 35.36 3.84
4859 19818 4.854784 TCTCGCTCGTGCCATCGC 62.855 66.667 3.52 0.00 35.36 4.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 3.723348 AAAAGCCGAAGCCGACGC 61.723 61.111 0.00 0.00 41.25 5.19
15 16 1.153765 GGATGCAAAAGCCGAAGCC 60.154 57.895 0.00 0.00 41.25 4.35
26 27 1.425066 ACTCCTTGGAGTTGGATGCAA 59.575 47.619 15.93 0.00 29.93 4.08
50 51 2.880890 ACAAGCTTGTGGTTTAGCTCTG 59.119 45.455 30.66 0.56 46.53 3.35
51 52 3.214696 ACAAGCTTGTGGTTTAGCTCT 57.785 42.857 30.66 1.36 46.53 4.09
67 68 1.738099 CCTCTTCGGACCGCACAAG 60.738 63.158 9.66 8.28 33.16 3.16
79 80 2.433604 TCAGCAGATCCATGTCCTCTTC 59.566 50.000 0.00 0.00 0.00 2.87
106 107 2.722094 ACCTTGCGCTTGATCCATTTA 58.278 42.857 9.73 0.00 0.00 1.40
108 109 2.017049 GTACCTTGCGCTTGATCCATT 58.983 47.619 9.73 0.00 0.00 3.16
116 117 1.359848 CTTCATCGTACCTTGCGCTT 58.640 50.000 9.73 0.00 0.00 4.68
147 148 6.978343 TTGCGACTACAACATATTTAAGCT 57.022 33.333 0.00 0.00 0.00 3.74
165 167 9.781834 CCTCTGTTAAAATAATTTATGTTGCGA 57.218 29.630 2.60 0.00 31.33 5.10
166 168 9.567848 ACCTCTGTTAAAATAATTTATGTTGCG 57.432 29.630 2.60 0.00 31.33 4.85
184 186 4.942761 AACAATCAAATGCACCTCTGTT 57.057 36.364 0.00 0.00 0.00 3.16
205 207 0.536233 TCCGTGGCAGCAGCTAAAAA 60.536 50.000 0.00 0.00 41.70 1.94
209 211 1.617018 AATCTCCGTGGCAGCAGCTA 61.617 55.000 0.00 0.00 41.70 3.32
216 218 1.223487 GGCCTAAATCTCCGTGGCA 59.777 57.895 0.00 0.00 44.85 4.92
219 221 0.106894 GGAGGGCCTAAATCTCCGTG 59.893 60.000 5.73 0.00 37.85 4.94
220 222 2.529312 GGAGGGCCTAAATCTCCGT 58.471 57.895 5.73 0.00 37.85 4.69
222 224 0.682292 CTCGGAGGGCCTAAATCTCC 59.318 60.000 5.73 13.50 42.60 3.71
223 225 0.034198 GCTCGGAGGGCCTAAATCTC 59.966 60.000 5.73 0.00 0.00 2.75
224 226 0.399233 AGCTCGGAGGGCCTAAATCT 60.399 55.000 5.73 0.00 0.00 2.40
225 227 1.339097 TAGCTCGGAGGGCCTAAATC 58.661 55.000 5.73 0.00 0.00 2.17
226 228 1.694696 CTTAGCTCGGAGGGCCTAAAT 59.305 52.381 5.73 0.00 0.00 1.40
227 229 1.120530 CTTAGCTCGGAGGGCCTAAA 58.879 55.000 5.73 0.00 0.00 1.85
228 230 1.400530 GCTTAGCTCGGAGGGCCTAA 61.401 60.000 5.73 5.45 0.00 2.69
229 231 1.833049 GCTTAGCTCGGAGGGCCTA 60.833 63.158 5.73 0.00 0.00 3.93
230 232 3.157949 GCTTAGCTCGGAGGGCCT 61.158 66.667 5.25 5.25 0.00 5.19
231 233 1.400530 TAAGCTTAGCTCGGAGGGCC 61.401 60.000 7.36 0.00 38.25 5.80
232 234 0.464452 TTAAGCTTAGCTCGGAGGGC 59.536 55.000 7.36 0.00 38.25 5.19
233 235 2.981859 TTTAAGCTTAGCTCGGAGGG 57.018 50.000 7.36 0.00 38.25 4.30
251 253 1.949525 TCGCTTCTTGCTGAGCTTTTT 59.050 42.857 5.83 0.00 40.11 1.94
252 254 1.597742 TCGCTTCTTGCTGAGCTTTT 58.402 45.000 5.83 0.00 40.11 2.27
253 255 1.265365 GTTCGCTTCTTGCTGAGCTTT 59.735 47.619 5.83 0.00 40.11 3.51
254 256 0.871057 GTTCGCTTCTTGCTGAGCTT 59.129 50.000 5.83 0.00 40.11 3.74
255 257 0.250038 TGTTCGCTTCTTGCTGAGCT 60.250 50.000 5.83 0.00 40.11 4.09
256 258 0.801251 ATGTTCGCTTCTTGCTGAGC 59.199 50.000 0.00 0.00 40.11 4.26
257 259 2.071540 TGATGTTCGCTTCTTGCTGAG 58.928 47.619 0.00 0.00 40.11 3.35
258 260 2.168326 TGATGTTCGCTTCTTGCTGA 57.832 45.000 0.00 0.00 40.11 4.26
259 261 2.975410 TTGATGTTCGCTTCTTGCTG 57.025 45.000 0.00 0.00 40.11 4.41
260 262 3.988379 TTTTGATGTTCGCTTCTTGCT 57.012 38.095 0.00 0.00 40.11 3.91
261 263 3.426525 CCTTTTTGATGTTCGCTTCTTGC 59.573 43.478 0.00 0.00 38.57 4.01
262 264 4.610945 ACCTTTTTGATGTTCGCTTCTTG 58.389 39.130 0.00 0.00 0.00 3.02
263 265 4.918810 ACCTTTTTGATGTTCGCTTCTT 57.081 36.364 0.00 0.00 0.00 2.52
264 266 4.918810 AACCTTTTTGATGTTCGCTTCT 57.081 36.364 0.00 0.00 0.00 2.85
265 267 5.516090 TGTAACCTTTTTGATGTTCGCTTC 58.484 37.500 0.00 0.00 0.00 3.86
266 268 5.508200 TGTAACCTTTTTGATGTTCGCTT 57.492 34.783 0.00 0.00 0.00 4.68
267 269 5.278604 GTTGTAACCTTTTTGATGTTCGCT 58.721 37.500 0.00 0.00 0.00 4.93
268 270 4.145756 CGTTGTAACCTTTTTGATGTTCGC 59.854 41.667 0.00 0.00 0.00 4.70
269 271 5.503498 TCGTTGTAACCTTTTTGATGTTCG 58.497 37.500 0.00 0.00 0.00 3.95
270 272 7.190871 TCTTCGTTGTAACCTTTTTGATGTTC 58.809 34.615 0.00 0.00 0.00 3.18
271 273 7.090953 TCTTCGTTGTAACCTTTTTGATGTT 57.909 32.000 0.00 0.00 0.00 2.71
272 274 6.687081 TCTTCGTTGTAACCTTTTTGATGT 57.313 33.333 0.00 0.00 0.00 3.06
273 275 6.636850 CCTTCTTCGTTGTAACCTTTTTGATG 59.363 38.462 0.00 0.00 0.00 3.07
274 276 6.734871 GCCTTCTTCGTTGTAACCTTTTTGAT 60.735 38.462 0.00 0.00 0.00 2.57
275 277 5.449451 GCCTTCTTCGTTGTAACCTTTTTGA 60.449 40.000 0.00 0.00 0.00 2.69
276 278 4.738252 GCCTTCTTCGTTGTAACCTTTTTG 59.262 41.667 0.00 0.00 0.00 2.44
277 279 4.202080 GGCCTTCTTCGTTGTAACCTTTTT 60.202 41.667 0.00 0.00 0.00 1.94
278 280 3.317149 GGCCTTCTTCGTTGTAACCTTTT 59.683 43.478 0.00 0.00 0.00 2.27
279 281 2.882761 GGCCTTCTTCGTTGTAACCTTT 59.117 45.455 0.00 0.00 0.00 3.11
280 282 2.158726 TGGCCTTCTTCGTTGTAACCTT 60.159 45.455 3.32 0.00 0.00 3.50
281 283 1.418637 TGGCCTTCTTCGTTGTAACCT 59.581 47.619 3.32 0.00 0.00 3.50
282 284 1.886886 TGGCCTTCTTCGTTGTAACC 58.113 50.000 3.32 0.00 0.00 2.85
283 285 2.093783 CGATGGCCTTCTTCGTTGTAAC 59.906 50.000 16.03 0.00 37.98 2.50
284 286 2.028839 TCGATGGCCTTCTTCGTTGTAA 60.029 45.455 16.03 0.00 41.79 2.41
285 287 1.546923 TCGATGGCCTTCTTCGTTGTA 59.453 47.619 16.03 0.00 41.79 2.41
286 288 0.320374 TCGATGGCCTTCTTCGTTGT 59.680 50.000 16.03 0.00 41.79 3.32
287 289 1.328680 CATCGATGGCCTTCTTCGTTG 59.671 52.381 17.96 13.45 41.79 4.10
288 290 1.207089 TCATCGATGGCCTTCTTCGTT 59.793 47.619 24.61 6.43 41.79 3.85
289 291 0.824109 TCATCGATGGCCTTCTTCGT 59.176 50.000 24.61 3.16 41.79 3.85
290 292 1.495878 CTCATCGATGGCCTTCTTCG 58.504 55.000 24.61 12.98 42.26 3.79
291 293 1.202627 AGCTCATCGATGGCCTTCTTC 60.203 52.381 24.61 5.94 0.00 2.87
292 294 0.835941 AGCTCATCGATGGCCTTCTT 59.164 50.000 24.61 8.32 0.00 2.52
293 295 0.106335 CAGCTCATCGATGGCCTTCT 59.894 55.000 24.61 11.64 0.00 2.85
294 296 0.883814 CCAGCTCATCGATGGCCTTC 60.884 60.000 24.61 6.40 43.15 3.46
295 297 1.147824 CCAGCTCATCGATGGCCTT 59.852 57.895 24.61 9.61 43.15 4.35
296 298 2.827423 CCAGCTCATCGATGGCCT 59.173 61.111 24.61 17.26 43.15 5.19
300 302 0.661552 CTTTGGCCAGCTCATCGATG 59.338 55.000 19.61 19.61 0.00 3.84
301 303 0.543277 TCTTTGGCCAGCTCATCGAT 59.457 50.000 5.11 0.00 0.00 3.59
302 304 0.107993 CTCTTTGGCCAGCTCATCGA 60.108 55.000 5.11 0.00 0.00 3.59
303 305 0.107993 TCTCTTTGGCCAGCTCATCG 60.108 55.000 5.11 0.00 0.00 3.84
304 306 2.015587 CTTCTCTTTGGCCAGCTCATC 58.984 52.381 5.11 0.00 0.00 2.92
305 307 1.340795 CCTTCTCTTTGGCCAGCTCAT 60.341 52.381 5.11 0.00 0.00 2.90
306 308 0.037303 CCTTCTCTTTGGCCAGCTCA 59.963 55.000 5.11 0.00 0.00 4.26
307 309 1.311651 GCCTTCTCTTTGGCCAGCTC 61.312 60.000 5.11 0.00 43.11 4.09
308 310 1.303970 GCCTTCTCTTTGGCCAGCT 60.304 57.895 5.11 0.00 43.11 4.24
309 311 3.282271 GCCTTCTCTTTGGCCAGC 58.718 61.111 5.11 0.00 43.11 4.85
314 316 1.532868 CACGACTTGCCTTCTCTTTGG 59.467 52.381 0.00 0.00 0.00 3.28
315 317 1.532868 CCACGACTTGCCTTCTCTTTG 59.467 52.381 0.00 0.00 0.00 2.77
316 318 1.884235 CCACGACTTGCCTTCTCTTT 58.116 50.000 0.00 0.00 0.00 2.52
317 319 0.603975 GCCACGACTTGCCTTCTCTT 60.604 55.000 0.00 0.00 0.00 2.85
318 320 1.004440 GCCACGACTTGCCTTCTCT 60.004 57.895 0.00 0.00 0.00 3.10
319 321 0.884704 TTGCCACGACTTGCCTTCTC 60.885 55.000 0.00 0.00 0.00 2.87
320 322 0.886490 CTTGCCACGACTTGCCTTCT 60.886 55.000 0.00 0.00 0.00 2.85
321 323 1.576421 CTTGCCACGACTTGCCTTC 59.424 57.895 0.00 0.00 0.00 3.46
322 324 1.898574 CCTTGCCACGACTTGCCTT 60.899 57.895 0.00 0.00 0.00 4.35
323 325 2.281761 CCTTGCCACGACTTGCCT 60.282 61.111 0.00 0.00 0.00 4.75
324 326 2.281484 TCCTTGCCACGACTTGCC 60.281 61.111 0.00 0.00 0.00 4.52
325 327 2.617274 GGTCCTTGCCACGACTTGC 61.617 63.158 0.00 0.00 0.00 4.01
326 328 1.227823 TGGTCCTTGCCACGACTTG 60.228 57.895 0.00 0.00 32.81 3.16
327 329 1.071471 CTGGTCCTTGCCACGACTT 59.929 57.895 0.00 0.00 34.36 3.01
328 330 2.743718 CTGGTCCTTGCCACGACT 59.256 61.111 0.00 0.00 34.36 4.18
329 331 2.358737 CCTGGTCCTTGCCACGAC 60.359 66.667 0.00 0.00 34.36 4.34
330 332 4.329545 GCCTGGTCCTTGCCACGA 62.330 66.667 0.00 0.00 34.36 4.35
343 345 4.087892 CTCAGTGACCCGGGCCTG 62.088 72.222 24.08 23.44 0.00 4.85
346 348 4.083862 GACCTCAGTGACCCGGGC 62.084 72.222 24.08 14.70 0.00 6.13
347 349 3.760035 CGACCTCAGTGACCCGGG 61.760 72.222 22.25 22.25 0.00 5.73
348 350 2.675423 TCGACCTCAGTGACCCGG 60.675 66.667 0.00 0.00 0.00 5.73
349 351 1.241990 TTCTCGACCTCAGTGACCCG 61.242 60.000 0.00 0.00 0.00 5.28
350 352 0.966920 TTTCTCGACCTCAGTGACCC 59.033 55.000 0.00 0.00 0.00 4.46
351 353 1.887198 TCTTTCTCGACCTCAGTGACC 59.113 52.381 0.00 0.00 0.00 4.02
352 354 2.936316 GTCTTTCTCGACCTCAGTGAC 58.064 52.381 0.00 0.00 0.00 3.67
361 363 2.371910 CCCTTCAGGTCTTTCTCGAC 57.628 55.000 0.00 0.00 0.00 4.20
372 374 0.318784 GCGCGTATAGACCCTTCAGG 60.319 60.000 8.43 0.00 43.78 3.86
373 375 0.384309 TGCGCGTATAGACCCTTCAG 59.616 55.000 8.43 0.00 0.00 3.02
374 376 0.818938 TTGCGCGTATAGACCCTTCA 59.181 50.000 8.43 0.00 0.00 3.02
375 377 1.206523 GTTGCGCGTATAGACCCTTC 58.793 55.000 8.43 0.00 0.00 3.46
376 378 0.526954 CGTTGCGCGTATAGACCCTT 60.527 55.000 8.43 0.00 35.54 3.95
377 379 1.065273 CGTTGCGCGTATAGACCCT 59.935 57.895 8.43 0.00 35.54 4.34
378 380 3.609258 CGTTGCGCGTATAGACCC 58.391 61.111 8.43 0.00 35.54 4.46
388 390 3.236618 GAAGGGTGTCACGTTGCGC 62.237 63.158 0.00 0.00 0.00 6.09
389 391 1.433053 TTGAAGGGTGTCACGTTGCG 61.433 55.000 0.00 0.00 0.00 4.85
390 392 0.307760 CTTGAAGGGTGTCACGTTGC 59.692 55.000 0.00 0.00 0.00 4.17
391 393 1.867233 CTCTTGAAGGGTGTCACGTTG 59.133 52.381 0.00 0.00 0.00 4.10
392 394 1.202651 CCTCTTGAAGGGTGTCACGTT 60.203 52.381 0.00 0.00 42.03 3.99
393 395 0.393077 CCTCTTGAAGGGTGTCACGT 59.607 55.000 0.00 0.00 42.03 4.49
394 396 0.679505 TCCTCTTGAAGGGTGTCACG 59.320 55.000 0.00 0.00 46.23 4.35
395 397 1.270893 GGTCCTCTTGAAGGGTGTCAC 60.271 57.143 0.00 0.00 46.23 3.67
396 398 1.056660 GGTCCTCTTGAAGGGTGTCA 58.943 55.000 0.00 0.00 46.23 3.58
397 399 1.002544 CTGGTCCTCTTGAAGGGTGTC 59.997 57.143 0.00 0.00 46.23 3.67
398 400 1.059913 CTGGTCCTCTTGAAGGGTGT 58.940 55.000 0.00 0.00 46.23 4.16
399 401 1.352083 TCTGGTCCTCTTGAAGGGTG 58.648 55.000 0.00 0.00 46.23 4.61
400 402 2.118403 TTCTGGTCCTCTTGAAGGGT 57.882 50.000 0.00 0.00 46.23 4.34
401 403 3.508845 TTTTCTGGTCCTCTTGAAGGG 57.491 47.619 0.00 0.00 46.23 3.95
402 404 9.969074 ACCTTCTTTTTCTGGTCCTCTTGAAGG 62.969 44.444 0.57 0.57 46.99 3.46
403 405 5.240403 CCTTCTTTTTCTGGTCCTCTTGAAG 59.760 44.000 0.00 0.00 0.00 3.02
404 406 5.133221 CCTTCTTTTTCTGGTCCTCTTGAA 58.867 41.667 0.00 0.00 0.00 2.69
405 407 4.166144 ACCTTCTTTTTCTGGTCCTCTTGA 59.834 41.667 0.00 0.00 0.00 3.02
406 408 4.464947 ACCTTCTTTTTCTGGTCCTCTTG 58.535 43.478 0.00 0.00 0.00 3.02
407 409 4.720046 GACCTTCTTTTTCTGGTCCTCTT 58.280 43.478 0.00 0.00 42.11 2.85
408 410 3.244249 CGACCTTCTTTTTCTGGTCCTCT 60.244 47.826 0.00 0.00 44.29 3.69
409 411 3.067833 CGACCTTCTTTTTCTGGTCCTC 58.932 50.000 0.00 0.00 44.29 3.71
410 412 2.438392 ACGACCTTCTTTTTCTGGTCCT 59.562 45.455 0.00 0.00 44.29 3.85
411 413 2.806818 GACGACCTTCTTTTTCTGGTCC 59.193 50.000 0.00 0.00 44.29 4.46
412 414 3.463944 TGACGACCTTCTTTTTCTGGTC 58.536 45.455 0.00 0.00 43.86 4.02
413 415 3.553828 TGACGACCTTCTTTTTCTGGT 57.446 42.857 0.00 0.00 35.23 4.00
414 416 3.304057 GCTTGACGACCTTCTTTTTCTGG 60.304 47.826 0.00 0.00 0.00 3.86
415 417 3.561725 AGCTTGACGACCTTCTTTTTCTG 59.438 43.478 0.00 0.00 0.00 3.02
416 418 3.809905 AGCTTGACGACCTTCTTTTTCT 58.190 40.909 0.00 0.00 0.00 2.52
417 419 3.363084 CGAGCTTGACGACCTTCTTTTTC 60.363 47.826 0.00 0.00 0.00 2.29
418 420 2.544267 CGAGCTTGACGACCTTCTTTTT 59.456 45.455 0.00 0.00 0.00 1.94
419 421 2.135933 CGAGCTTGACGACCTTCTTTT 58.864 47.619 0.00 0.00 0.00 2.27
420 422 1.340248 TCGAGCTTGACGACCTTCTTT 59.660 47.619 0.00 0.00 34.85 2.52
421 423 0.959553 TCGAGCTTGACGACCTTCTT 59.040 50.000 0.00 0.00 34.85 2.52
422 424 0.523966 CTCGAGCTTGACGACCTTCT 59.476 55.000 0.00 0.00 35.88 2.85
423 425 0.522180 TCTCGAGCTTGACGACCTTC 59.478 55.000 7.81 0.00 35.88 3.46
424 426 0.959553 TTCTCGAGCTTGACGACCTT 59.040 50.000 7.81 0.00 35.88 3.50
425 427 0.959553 TTTCTCGAGCTTGACGACCT 59.040 50.000 7.81 0.00 35.88 3.85
426 428 1.997669 ATTTCTCGAGCTTGACGACC 58.002 50.000 7.81 0.00 35.88 4.79
427 429 2.987149 TCAATTTCTCGAGCTTGACGAC 59.013 45.455 7.81 0.00 35.88 4.34
428 430 3.245797 CTCAATTTCTCGAGCTTGACGA 58.754 45.455 7.81 0.00 38.11 4.20
429 431 3.631388 CTCAATTTCTCGAGCTTGACG 57.369 47.619 7.81 7.22 0.00 4.35
436 438 1.061711 CGCCAAGCTCAATTTCTCGAG 59.938 52.381 5.93 5.93 0.00 4.04
437 439 1.078709 CGCCAAGCTCAATTTCTCGA 58.921 50.000 0.00 0.00 0.00 4.04
438 440 0.798776 ACGCCAAGCTCAATTTCTCG 59.201 50.000 0.00 0.00 0.00 4.04
439 441 1.730446 GCACGCCAAGCTCAATTTCTC 60.730 52.381 0.00 0.00 0.00 2.87
440 442 0.242017 GCACGCCAAGCTCAATTTCT 59.758 50.000 0.00 0.00 0.00 2.52
441 443 0.039256 TGCACGCCAAGCTCAATTTC 60.039 50.000 0.00 0.00 0.00 2.17
442 444 0.388659 TTGCACGCCAAGCTCAATTT 59.611 45.000 0.00 0.00 0.00 1.82
443 445 0.388659 TTTGCACGCCAAGCTCAATT 59.611 45.000 0.00 0.00 34.34 2.32
444 446 0.038892 CTTTGCACGCCAAGCTCAAT 60.039 50.000 0.00 0.00 34.34 2.57
445 447 1.100463 TCTTTGCACGCCAAGCTCAA 61.100 50.000 0.00 0.00 34.34 3.02
446 448 1.509644 CTCTTTGCACGCCAAGCTCA 61.510 55.000 0.00 0.00 34.34 4.26
447 449 1.208614 CTCTTTGCACGCCAAGCTC 59.791 57.895 0.00 0.00 34.34 4.09
448 450 2.263741 CCTCTTTGCACGCCAAGCT 61.264 57.895 0.00 0.00 34.34 3.74
449 451 2.256461 CCTCTTTGCACGCCAAGC 59.744 61.111 0.00 0.00 34.34 4.01
450 452 2.256461 GCCTCTTTGCACGCCAAG 59.744 61.111 0.00 0.00 34.34 3.61
451 453 3.294493 GGCCTCTTTGCACGCCAA 61.294 61.111 0.00 0.00 41.25 4.52
454 456 3.741476 CTGGGCCTCTTTGCACGC 61.741 66.667 4.53 0.00 37.52 5.34
455 457 2.032528 TCTGGGCCTCTTTGCACG 59.967 61.111 4.53 0.00 37.52 5.34
456 458 1.973812 GGTCTGGGCCTCTTTGCAC 60.974 63.158 4.53 0.00 34.38 4.57
457 459 2.436109 GGTCTGGGCCTCTTTGCA 59.564 61.111 4.53 0.00 0.00 4.08
458 460 2.361737 GGGTCTGGGCCTCTTTGC 60.362 66.667 4.53 0.00 0.00 3.68
459 461 1.001641 CTGGGTCTGGGCCTCTTTG 60.002 63.158 4.53 0.00 0.00 2.77
460 462 2.234296 CCTGGGTCTGGGCCTCTTT 61.234 63.158 4.53 0.00 0.00 2.52
461 463 2.612115 CCTGGGTCTGGGCCTCTT 60.612 66.667 4.53 0.00 0.00 2.85
469 471 4.704833 CACCGTGGCCTGGGTCTG 62.705 72.222 14.47 2.85 33.23 3.51
491 493 1.066573 TCACTTGCTGAAGCTCCTAGC 60.067 52.381 3.61 9.21 42.84 3.42
492 494 3.325293 TTCACTTGCTGAAGCTCCTAG 57.675 47.619 3.61 0.00 42.66 3.02
493 495 3.181455 TGTTTCACTTGCTGAAGCTCCTA 60.181 43.478 3.61 0.00 40.12 2.94
494 496 2.225467 GTTTCACTTGCTGAAGCTCCT 58.775 47.619 3.61 0.00 40.12 3.69
495 497 1.949525 TGTTTCACTTGCTGAAGCTCC 59.050 47.619 3.61 0.00 40.12 4.70
496 498 3.366719 GTTGTTTCACTTGCTGAAGCTC 58.633 45.455 3.61 0.00 40.12 4.09
497 499 2.099756 GGTTGTTTCACTTGCTGAAGCT 59.900 45.455 3.61 0.00 40.12 3.74
498 500 2.159254 TGGTTGTTTCACTTGCTGAAGC 60.159 45.455 0.00 0.00 40.12 3.86
499 501 3.781079 TGGTTGTTTCACTTGCTGAAG 57.219 42.857 0.00 0.00 40.12 3.02
500 502 4.527509 TTTGGTTGTTTCACTTGCTGAA 57.472 36.364 0.00 0.00 37.08 3.02
501 503 4.493547 CTTTTGGTTGTTTCACTTGCTGA 58.506 39.130 0.00 0.00 0.00 4.26
502 504 3.618150 CCTTTTGGTTGTTTCACTTGCTG 59.382 43.478 0.00 0.00 34.07 4.41
503 505 3.860641 CCTTTTGGTTGTTTCACTTGCT 58.139 40.909 0.00 0.00 34.07 3.91
504 506 2.351418 GCCTTTTGGTTGTTTCACTTGC 59.649 45.455 0.00 0.00 42.99 4.01
505 507 2.935849 GGCCTTTTGGTTGTTTCACTTG 59.064 45.455 0.00 0.00 42.99 3.16
506 508 2.569404 TGGCCTTTTGGTTGTTTCACTT 59.431 40.909 3.32 0.00 42.99 3.16
507 509 2.093711 GTGGCCTTTTGGTTGTTTCACT 60.094 45.455 3.32 0.00 42.99 3.41
508 510 2.276201 GTGGCCTTTTGGTTGTTTCAC 58.724 47.619 3.32 0.00 42.99 3.18
509 511 1.134965 CGTGGCCTTTTGGTTGTTTCA 60.135 47.619 3.32 0.00 42.99 2.69
510 512 1.566404 CGTGGCCTTTTGGTTGTTTC 58.434 50.000 3.32 0.00 42.99 2.78
511 513 0.176910 CCGTGGCCTTTTGGTTGTTT 59.823 50.000 3.32 0.00 42.99 2.83
512 514 0.973496 ACCGTGGCCTTTTGGTTGTT 60.973 50.000 3.32 0.00 42.99 2.83
513 515 1.380650 ACCGTGGCCTTTTGGTTGT 60.381 52.632 3.32 0.00 42.99 3.32
514 516 1.067250 CACCGTGGCCTTTTGGTTG 59.933 57.895 3.32 0.00 42.99 3.77
515 517 2.131067 CCACCGTGGCCTTTTGGTT 61.131 57.895 4.16 0.00 42.99 3.67
516 518 2.520741 CCACCGTGGCCTTTTGGT 60.521 61.111 4.16 3.36 42.99 3.67
517 519 2.203422 TCCACCGTGGCCTTTTGG 60.203 61.111 13.19 5.57 37.47 3.28
518 520 2.561037 GGTCCACCGTGGCCTTTTG 61.561 63.158 13.19 0.00 37.47 2.44
519 521 2.203437 GGTCCACCGTGGCCTTTT 60.203 61.111 13.19 0.00 37.47 2.27
529 531 3.851128 GGCTCCTAGCGGTCCACC 61.851 72.222 0.00 0.00 43.62 4.61
530 532 3.851128 GGGCTCCTAGCGGTCCAC 61.851 72.222 0.00 0.00 43.62 4.02
534 536 4.733725 TTGGGGGCTCCTAGCGGT 62.734 66.667 4.32 0.00 43.62 5.68
535 537 3.866582 CTTGGGGGCTCCTAGCGG 61.867 72.222 4.32 0.00 43.62 5.52
536 538 3.083997 ACTTGGGGGCTCCTAGCG 61.084 66.667 15.16 0.00 43.62 4.26
537 539 2.747443 GGACTTGGGGGCTCCTAGC 61.747 68.421 15.16 7.67 41.23 3.42
538 540 1.306997 TGGACTTGGGGGCTCCTAG 60.307 63.158 13.64 13.64 42.83 3.02
539 541 1.615424 GTGGACTTGGGGGCTCCTA 60.615 63.158 4.32 0.00 36.20 2.94
540 542 2.936032 GTGGACTTGGGGGCTCCT 60.936 66.667 4.32 0.00 36.20 3.69
541 543 2.936032 AGTGGACTTGGGGGCTCC 60.936 66.667 0.00 0.00 0.00 4.70
542 544 2.352805 CAGTGGACTTGGGGGCTC 59.647 66.667 0.00 0.00 0.00 4.70
558 560 3.479489 TGTCATTTTTCTCTCTGCAGCA 58.521 40.909 9.47 0.00 0.00 4.41
561 563 3.250762 CCGTTGTCATTTTTCTCTCTGCA 59.749 43.478 0.00 0.00 0.00 4.41
563 565 3.499918 AGCCGTTGTCATTTTTCTCTCTG 59.500 43.478 0.00 0.00 0.00 3.35
587 589 8.763049 TCTATATAATCAGGCGTCAAAGATTG 57.237 34.615 11.15 0.00 33.22 2.67
595 597 9.011407 CGTCTTATTTCTATATAATCAGGCGTC 57.989 37.037 7.32 0.00 32.58 5.19
656 672 3.893813 GGCTTATTTCTCCATGCTCCATT 59.106 43.478 0.00 0.00 0.00 3.16
692 708 5.541484 AGTCTTTTTCTCCAAGGCATCAATT 59.459 36.000 0.00 0.00 0.00 2.32
693 709 5.082425 AGTCTTTTTCTCCAAGGCATCAAT 58.918 37.500 0.00 0.00 0.00 2.57
701 717 8.532977 TTTTTGTGAAAGTCTTTTTCTCCAAG 57.467 30.769 0.00 0.00 0.00 3.61
736 752 8.750298 TGTCTCTATTTTCTCTCCGTCTTATTT 58.250 33.333 0.00 0.00 0.00 1.40
740 756 5.946972 TCTGTCTCTATTTTCTCTCCGTCTT 59.053 40.000 0.00 0.00 0.00 3.01
742 758 5.587043 TCTCTGTCTCTATTTTCTCTCCGTC 59.413 44.000 0.00 0.00 0.00 4.79
743 759 5.355910 GTCTCTGTCTCTATTTTCTCTCCGT 59.644 44.000 0.00 0.00 0.00 4.69
744 760 5.355630 TGTCTCTGTCTCTATTTTCTCTCCG 59.644 44.000 0.00 0.00 0.00 4.63
745 761 6.767524 TGTCTCTGTCTCTATTTTCTCTCC 57.232 41.667 0.00 0.00 0.00 3.71
749 765 9.007901 CCATTTTTGTCTCTGTCTCTATTTTCT 57.992 33.333 0.00 0.00 0.00 2.52
752 768 8.160106 ACTCCATTTTTGTCTCTGTCTCTATTT 58.840 33.333 0.00 0.00 0.00 1.40
754 770 7.251321 ACTCCATTTTTGTCTCTGTCTCTAT 57.749 36.000 0.00 0.00 0.00 1.98
755 771 6.672266 ACTCCATTTTTGTCTCTGTCTCTA 57.328 37.500 0.00 0.00 0.00 2.43
757 773 6.692486 TCTACTCCATTTTTGTCTCTGTCTC 58.308 40.000 0.00 0.00 0.00 3.36
885 939 5.522097 CCAAAAGCATAAAAGACGTTTTGGT 59.478 36.000 13.75 0.00 44.55 3.67
891 945 3.317993 AGCACCAAAAGCATAAAAGACGT 59.682 39.130 0.00 0.00 0.00 4.34
903 957 4.926140 AGAGGAAAAGAAGCACCAAAAG 57.074 40.909 0.00 0.00 0.00 2.27
914 969 5.305128 TCCTACCGTTTACAAGAGGAAAAGA 59.695 40.000 0.00 0.00 30.16 2.52
921 976 5.326200 AGATGTCCTACCGTTTACAAGAG 57.674 43.478 0.00 0.00 0.00 2.85
934 992 5.395990 GGAACGAATTGGGTTAGATGTCCTA 60.396 44.000 0.00 0.00 0.00 2.94
965 1024 1.228862 CTTGGTTGGTGGGGGAAGG 60.229 63.158 0.00 0.00 0.00 3.46
966 1025 1.228862 CCTTGGTTGGTGGGGGAAG 60.229 63.158 0.00 0.00 0.00 3.46
967 1026 2.939298 CCTTGGTTGGTGGGGGAA 59.061 61.111 0.00 0.00 0.00 3.97
968 1027 3.909651 GCCTTGGTTGGTGGGGGA 61.910 66.667 0.00 0.00 0.00 4.81
978 1059 1.973281 CTGATTGCCGTGCCTTGGT 60.973 57.895 0.00 0.00 0.00 3.67
984 1065 1.308069 ACATGGTCTGATTGCCGTGC 61.308 55.000 0.00 0.00 43.60 5.34
988 1069 1.672881 GCTGTACATGGTCTGATTGCC 59.327 52.381 0.00 0.00 0.00 4.52
1140 1251 3.161557 AGGAACTGGTGCAGGACC 58.838 61.111 3.58 3.58 46.37 4.46
1337 9673 9.368674 CGAATCTAACGAAGATATACTCTAGGA 57.631 37.037 5.65 0.00 44.56 2.94
1429 9818 1.858372 GCCGGTCCTCGATCTAGAGC 61.858 65.000 1.90 0.00 42.43 4.09
1762 10377 1.975660 GTGGCTTCTAAACACCACCA 58.024 50.000 0.00 0.00 45.56 4.17
2027 10767 4.387211 GGTCCTAATGTACTACTCCCTCCA 60.387 50.000 0.00 0.00 0.00 3.86
2112 10960 1.112113 TCTCGGCACTCCCTGATTAC 58.888 55.000 0.00 0.00 0.00 1.89
2240 11096 9.474313 TGGGAGCAGTAACAATCTAAAATAATT 57.526 29.630 0.00 0.00 0.00 1.40
2241 11097 8.903820 GTGGGAGCAGTAACAATCTAAAATAAT 58.096 33.333 0.00 0.00 0.00 1.28
2242 11098 7.065324 CGTGGGAGCAGTAACAATCTAAAATAA 59.935 37.037 0.00 0.00 0.00 1.40
2243 11099 6.537301 CGTGGGAGCAGTAACAATCTAAAATA 59.463 38.462 0.00 0.00 0.00 1.40
2244 11100 5.354234 CGTGGGAGCAGTAACAATCTAAAAT 59.646 40.000 0.00 0.00 0.00 1.82
2245 11101 4.693566 CGTGGGAGCAGTAACAATCTAAAA 59.306 41.667 0.00 0.00 0.00 1.52
2246 11102 4.020928 TCGTGGGAGCAGTAACAATCTAAA 60.021 41.667 0.00 0.00 0.00 1.85
2741 12328 3.088532 TGTTTCCAGTTGCAACAGAAGT 58.911 40.909 30.11 7.43 0.00 3.01
3553 17935 1.202698 AGCCGGATCTTGTTCATAGCC 60.203 52.381 5.05 0.00 0.00 3.93
3557 17939 0.749454 GGCAGCCGGATCTTGTTCAT 60.749 55.000 5.05 0.00 0.00 2.57
3863 18551 4.314440 AACAAGCAGGCTCGCGGA 62.314 61.111 6.13 0.00 36.85 5.54
4054 18893 5.078411 ACAGCTCAAGTTCGACAAGATAT 57.922 39.130 0.00 0.00 0.00 1.63
4055 18894 4.486090 GACAGCTCAAGTTCGACAAGATA 58.514 43.478 0.00 0.00 0.00 1.98
4056 18895 3.321497 GACAGCTCAAGTTCGACAAGAT 58.679 45.455 0.00 0.00 0.00 2.40
4057 18896 2.545952 GGACAGCTCAAGTTCGACAAGA 60.546 50.000 0.00 0.00 0.00 3.02
4058 18897 1.795286 GGACAGCTCAAGTTCGACAAG 59.205 52.381 0.00 0.00 0.00 3.16
4100 18943 3.009723 AGTGGCAATAGAAACACCGATG 58.990 45.455 0.00 0.00 34.50 3.84
4118 18961 6.456447 CAAAAGCATAATTGGAACACAGTG 57.544 37.500 0.00 0.00 39.29 3.66
4257 19124 5.592054 TGACAAAGACAGTGAACTACAGAG 58.408 41.667 0.00 0.00 0.00 3.35
4271 19138 9.495754 GACAAGCTGATATAAAATGACAAAGAC 57.504 33.333 0.00 0.00 0.00 3.01
4293 19183 4.154015 CGCACAGAAGGTATGAAATGACAA 59.846 41.667 0.00 0.00 0.00 3.18
4295 19185 3.684788 ACGCACAGAAGGTATGAAATGAC 59.315 43.478 0.00 0.00 0.00 3.06
4297 19187 3.436704 ACACGCACAGAAGGTATGAAATG 59.563 43.478 0.00 0.00 0.00 2.32
4298 19188 3.674997 ACACGCACAGAAGGTATGAAAT 58.325 40.909 0.00 0.00 0.00 2.17
4302 19192 1.135972 GCAACACGCACAGAAGGTATG 60.136 52.381 0.00 0.00 41.79 2.39
4323 19243 9.918630 ATTTTGATTTGTCAATAACTCTTCCAG 57.081 29.630 0.00 0.00 0.00 3.86
4339 19259 7.201548 GGGCTGTGCTGTTTATATTTTGATTTG 60.202 37.037 0.00 0.00 0.00 2.32
4453 19385 3.968265 GAAATCAATTCCTGGGGAGTGA 58.032 45.455 0.31 0.31 33.94 3.41
4497 19456 3.806949 ATACAGCCTGAACAAAGGGAA 57.193 42.857 0.00 0.00 37.84 3.97
4499 19458 3.420893 TGAATACAGCCTGAACAAAGGG 58.579 45.455 0.00 0.00 37.84 3.95
4500 19459 5.452078 TTTGAATACAGCCTGAACAAAGG 57.548 39.130 0.00 0.00 40.63 3.11
4503 19462 7.759489 AACTATTTGAATACAGCCTGAACAA 57.241 32.000 0.00 0.00 0.00 2.83
4543 19502 7.987458 TCCCTGATGATTGAGTAATACAAGAAC 59.013 37.037 0.00 0.00 0.00 3.01
4563 19522 2.158957 GGAACGTGATAGCATTCCCTGA 60.159 50.000 2.48 0.00 35.54 3.86
4564 19523 2.213499 GGAACGTGATAGCATTCCCTG 58.787 52.381 2.48 0.00 35.54 4.45
4565 19524 2.622064 GGAACGTGATAGCATTCCCT 57.378 50.000 2.48 0.00 35.54 4.20
4592 19551 3.677648 CTGCTGTGTGGCTTGGGC 61.678 66.667 0.00 0.00 37.82 5.36
4606 19565 3.440522 GGTAGATCCCAAGTTCAAACTGC 59.559 47.826 0.00 0.00 39.66 4.40
4620 19579 6.405538 TGATTTGGCAAATTTTGGTAGATCC 58.594 36.000 25.02 9.40 0.00 3.36
4627 19586 7.098477 TCTAGTCATGATTTGGCAAATTTTGG 58.902 34.615 25.02 15.23 29.99 3.28
4661 19620 9.642343 TCAGGATTACTCATATACACTGTACTT 57.358 33.333 0.00 0.00 0.00 2.24
4662 19621 9.815306 ATCAGGATTACTCATATACACTGTACT 57.185 33.333 0.00 0.00 0.00 2.73
4681 19640 9.930158 GTTCTCCCTAGATACTTATATCAGGAT 57.070 37.037 0.00 0.00 39.91 3.24
4682 19641 8.901841 TGTTCTCCCTAGATACTTATATCAGGA 58.098 37.037 0.00 7.15 39.91 3.86
4683 19642 9.707957 ATGTTCTCCCTAGATACTTATATCAGG 57.292 37.037 0.00 2.74 39.91 3.86
4687 19646 9.707957 CCTCATGTTCTCCCTAGATACTTATAT 57.292 37.037 0.00 0.00 0.00 0.86
4688 19647 7.616150 GCCTCATGTTCTCCCTAGATACTTATA 59.384 40.741 0.00 0.00 0.00 0.98
4689 19648 6.439058 GCCTCATGTTCTCCCTAGATACTTAT 59.561 42.308 0.00 0.00 0.00 1.73
4690 19649 5.775701 GCCTCATGTTCTCCCTAGATACTTA 59.224 44.000 0.00 0.00 0.00 2.24
4691 19650 4.591072 GCCTCATGTTCTCCCTAGATACTT 59.409 45.833 0.00 0.00 0.00 2.24
4692 19651 4.140805 AGCCTCATGTTCTCCCTAGATACT 60.141 45.833 0.00 0.00 0.00 2.12
4693 19652 4.156477 AGCCTCATGTTCTCCCTAGATAC 58.844 47.826 0.00 0.00 0.00 2.24
4694 19653 4.477536 AGCCTCATGTTCTCCCTAGATA 57.522 45.455 0.00 0.00 0.00 1.98
4695 19654 3.342926 AGCCTCATGTTCTCCCTAGAT 57.657 47.619 0.00 0.00 0.00 1.98
4696 19655 2.856760 AGCCTCATGTTCTCCCTAGA 57.143 50.000 0.00 0.00 0.00 2.43
4697 19656 3.037549 AGAAGCCTCATGTTCTCCCTAG 58.962 50.000 0.00 0.00 0.00 3.02
4698 19657 3.034635 GAGAAGCCTCATGTTCTCCCTA 58.965 50.000 11.07 0.00 41.93 3.53
4699 19658 1.836802 GAGAAGCCTCATGTTCTCCCT 59.163 52.381 11.07 0.00 41.93 4.20
4700 19659 1.556911 TGAGAAGCCTCATGTTCTCCC 59.443 52.381 16.81 0.46 45.53 4.30
4709 19668 1.480137 GCTAAGCTCTGAGAAGCCTCA 59.520 52.381 9.28 0.00 46.48 3.86
4710 19669 2.223537 GCTAAGCTCTGAGAAGCCTC 57.776 55.000 9.28 0.00 43.56 4.70
4712 19671 3.377933 GGCTAAGCTCTGAGAAGCC 57.622 57.895 22.15 22.15 45.37 4.35
4713 19672 1.206849 AGTGGCTAAGCTCTGAGAAGC 59.793 52.381 9.28 12.81 42.82 3.86
4714 19673 2.760092 AGAGTGGCTAAGCTCTGAGAAG 59.240 50.000 9.28 3.47 40.24 2.85
4715 19674 2.757868 GAGAGTGGCTAAGCTCTGAGAA 59.242 50.000 9.28 0.00 41.63 2.87
4716 19675 2.374184 GAGAGTGGCTAAGCTCTGAGA 58.626 52.381 9.28 0.00 41.63 3.27
4717 19676 1.065401 CGAGAGTGGCTAAGCTCTGAG 59.935 57.143 0.00 0.00 41.63 3.35
4718 19677 1.098869 CGAGAGTGGCTAAGCTCTGA 58.901 55.000 0.00 0.00 41.63 3.27
4719 19678 0.102120 CCGAGAGTGGCTAAGCTCTG 59.898 60.000 0.00 0.00 41.63 3.35
4720 19679 2.499214 CCGAGAGTGGCTAAGCTCT 58.501 57.895 0.00 0.00 43.95 4.09
4729 19688 2.907897 GATCCAACGGCCGAGAGTGG 62.908 65.000 35.90 29.35 0.00 4.00
4730 19689 1.519455 GATCCAACGGCCGAGAGTG 60.519 63.158 35.90 22.18 0.00 3.51
4731 19690 2.893398 GATCCAACGGCCGAGAGT 59.107 61.111 35.90 13.55 0.00 3.24
4732 19691 2.076622 ATCGATCCAACGGCCGAGAG 62.077 60.000 35.90 20.18 33.09 3.20
4733 19692 1.672854 AATCGATCCAACGGCCGAGA 61.673 55.000 35.90 24.79 33.09 4.04
4734 19693 0.810031 AAATCGATCCAACGGCCGAG 60.810 55.000 35.90 23.30 33.09 4.63
4735 19694 0.391927 AAAATCGATCCAACGGCCGA 60.392 50.000 35.90 10.13 33.77 5.54
4736 19695 0.450184 AAAAATCGATCCAACGGCCG 59.550 50.000 26.86 26.86 0.00 6.13
4762 19721 3.550749 CGAGATCGGACGGACGAAGTC 62.551 61.905 7.76 6.80 46.92 3.01
4763 19722 1.703438 CGAGATCGGACGGACGAAGT 61.703 60.000 7.76 0.00 46.92 3.01
4764 19723 1.011019 CGAGATCGGACGGACGAAG 60.011 63.158 7.76 0.00 46.92 3.79
4765 19724 3.095911 CGAGATCGGACGGACGAA 58.904 61.111 7.76 0.00 46.92 3.85
4767 19726 3.574445 AGCGAGATCGGACGGACG 61.574 66.667 4.18 0.00 40.23 4.79
4768 19727 2.024871 CAGCGAGATCGGACGGAC 59.975 66.667 4.18 0.00 40.23 4.79
4769 19728 3.889044 GCAGCGAGATCGGACGGA 61.889 66.667 4.18 0.00 40.23 4.69
4770 19729 3.893763 AGCAGCGAGATCGGACGG 61.894 66.667 4.18 0.00 40.23 4.79
4771 19730 2.653448 CAGCAGCGAGATCGGACG 60.653 66.667 4.18 5.83 40.23 4.79
4772 19731 2.279120 CCAGCAGCGAGATCGGAC 60.279 66.667 4.18 0.00 40.23 4.79
4773 19732 2.440247 TCCAGCAGCGAGATCGGA 60.440 61.111 4.18 0.00 40.23 4.55
4774 19733 2.279120 GTCCAGCAGCGAGATCGG 60.279 66.667 4.18 0.00 40.23 4.18
4775 19734 2.399511 ATCGTCCAGCAGCGAGATCG 62.400 60.000 0.00 0.00 40.56 3.69
4776 19735 0.662970 GATCGTCCAGCAGCGAGATC 60.663 60.000 0.00 0.00 40.56 2.75
4777 19736 1.361993 GATCGTCCAGCAGCGAGAT 59.638 57.895 0.00 0.00 40.56 2.75
4778 19737 2.775856 GGATCGTCCAGCAGCGAGA 61.776 63.158 0.00 0.00 40.56 4.04
4779 19738 2.279120 GGATCGTCCAGCAGCGAG 60.279 66.667 0.00 0.00 40.56 5.03
4780 19739 2.755876 AGGATCGTCCAGCAGCGA 60.756 61.111 6.78 0.00 39.61 4.93
4781 19740 2.584418 CAGGATCGTCCAGCAGCG 60.584 66.667 6.78 0.00 39.61 5.18
4782 19741 2.202987 CCAGGATCGTCCAGCAGC 60.203 66.667 6.78 0.00 39.61 5.25
4783 19742 2.202987 GCCAGGATCGTCCAGCAG 60.203 66.667 0.00 0.00 39.61 4.24
4784 19743 3.785859 GGCCAGGATCGTCCAGCA 61.786 66.667 0.00 0.00 39.61 4.41
4785 19744 4.899239 CGGCCAGGATCGTCCAGC 62.899 72.222 2.24 8.13 39.61 4.85
4786 19745 3.019003 AACGGCCAGGATCGTCCAG 62.019 63.158 2.24 0.00 39.61 3.86
4787 19746 3.000819 AACGGCCAGGATCGTCCA 61.001 61.111 2.24 0.00 39.61 4.02
4788 19747 2.511600 CAACGGCCAGGATCGTCC 60.512 66.667 2.24 0.00 38.78 4.79
4789 19748 2.311688 ATCCAACGGCCAGGATCGTC 62.312 60.000 14.02 0.00 40.57 4.20
4790 19749 2.367202 ATCCAACGGCCAGGATCGT 61.367 57.895 14.02 2.81 40.57 3.73
4791 19750 2.505982 ATCCAACGGCCAGGATCG 59.494 61.111 14.02 0.00 40.57 3.69
4793 19752 0.331278 TTTGATCCAACGGCCAGGAT 59.669 50.000 18.46 18.46 46.98 3.24
4794 19753 0.111446 TTTTGATCCAACGGCCAGGA 59.889 50.000 10.66 10.66 38.50 3.86
4795 19754 0.965439 TTTTTGATCCAACGGCCAGG 59.035 50.000 2.24 0.60 0.00 4.45
4813 19772 7.219484 ACTATTCATTGTAGCAGTGCTTTTT 57.781 32.000 25.23 0.44 40.44 1.94
4814 19773 6.824305 ACTATTCATTGTAGCAGTGCTTTT 57.176 33.333 25.23 0.88 40.44 2.27
4815 19774 6.824305 AACTATTCATTGTAGCAGTGCTTT 57.176 33.333 25.23 3.51 40.44 3.51
4816 19775 6.037610 GCTAACTATTCATTGTAGCAGTGCTT 59.962 38.462 25.23 7.65 40.44 3.91
4817 19776 5.525378 GCTAACTATTCATTGTAGCAGTGCT 59.475 40.000 23.44 23.44 43.41 4.40
4818 19777 5.525378 AGCTAACTATTCATTGTAGCAGTGC 59.475 40.000 7.13 7.13 0.00 4.40
4819 19778 6.983307 AGAGCTAACTATTCATTGTAGCAGTG 59.017 38.462 4.03 0.00 0.00 3.66
4820 19779 7.118496 AGAGCTAACTATTCATTGTAGCAGT 57.882 36.000 4.03 0.00 0.00 4.40
4821 19780 6.362016 CGAGAGCTAACTATTCATTGTAGCAG 59.638 42.308 4.03 0.00 0.00 4.24
4822 19781 6.209361 CGAGAGCTAACTATTCATTGTAGCA 58.791 40.000 4.03 0.00 0.00 3.49
4823 19782 6.683090 CGAGAGCTAACTATTCATTGTAGC 57.317 41.667 0.00 0.00 0.00 3.58
4841 19800 2.653448 CGATGGCACGAGCGAGAG 60.653 66.667 0.00 0.00 43.41 3.20
4842 19801 4.854784 GCGATGGCACGAGCGAGA 62.855 66.667 12.46 0.00 43.41 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.