AutoCloner

Multiple sequence alignment - TraesCS3D01G381900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3D01G381900	chr3D	100.000	3098	0	0	1	3098	497858248	497861345	0.000000e+00	5722
1	TraesCS3D01G381900	chr3D	87.429	883	81	12	895	1759	520610307	520609437	0.000000e+00	989
2	TraesCS3D01G381900	chr3B	91.834	2339	133	29	444	2764	658462138	658464436	0.000000e+00	3208
3	TraesCS3D01G381900	chr3B	94.423	789	33	3	2315	3098	35329203	35328421	0.000000e+00	1203
4	TraesCS3D01G381900	chr3B	86.952	889	86	17	895	1759	685639954	685639072	0.000000e+00	972
5	TraesCS3D01G381900	chr3B	86.952	889	85	18	895	1759	685668446	685667565	0.000000e+00	970
6	TraesCS3D01G381900	chr3B	93.072	433	21	4	2670	3098	658464424	658464851	2.620000e-175	625
7	TraesCS3D01G381900	chr3B	87.940	199	22	2	1	199	658461397	658461593	1.860000e-57	233
8	TraesCS3D01G381900	chr3B	87.701	187	21	2	265	449	658461608	658461794	1.870000e-52	217
9	TraesCS3D01G381900	chr3A	92.177	1879	123	11	1	1875	636573225	636571367	0.000000e+00	2634
10	TraesCS3D01G381900	chr3A	92.638	815	28	10	1871	2665	636566058	636565256	0.000000e+00	1144
11	TraesCS3D01G381900	chr3A	88.282	879	76	17	895	1759	655926438	655925573	0.000000e+00	1027
12	TraesCS3D01G381900	chr3A	87.430	891	74	20	895	1759	658195241	658196119	0.000000e+00	990
13	TraesCS3D01G381900	chr3A	95.968	372	15	0	2727	3098	636565256	636564885	3.420000e-169	604
14	TraesCS3D01G381900	chr6B	93.916	789	37	3	2315	3098	718808199	718808981	0.000000e+00	1181
15	TraesCS3D01G381900	chr6B	93.418	790	40	4	2315	3098	709227241	709226458	0.000000e+00	1160
16	TraesCS3D01G381900	chr5B	93.916	789	36	4	2315	3098	572031601	572032382	0.000000e+00	1181
17	TraesCS3D01G381900	chr2B	93.663	789	38	4	2315	3098	123553791	123554572	0.000000e+00	1170
18	TraesCS3D01G381900	chr7B	93.156	789	41	4	2315	3098	702920257	702921037	0.000000e+00	1146
19	TraesCS3D01G381900	chr1B	92.395	789	39	4	2315	3098	56051494	56050722	0.000000e+00	1105
20	TraesCS3D01G381900	chr4B	92.142	789	41	5	2315	3098	515705537	515704765	0.000000e+00	1094

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3D01G381900	chr3D	497858248	497861345	3097	False	5722.00	5722	100.00000	1	3098	1	chr3D.!!$F1	3097
1	TraesCS3D01G381900	chr3D	520609437	520610307	870	True	989.00	989	87.42900	895	1759	1	chr3D.!!$R1	864
2	TraesCS3D01G381900	chr3B	35328421	35329203	782	True	1203.00	1203	94.42300	2315	3098	1	chr3B.!!$R1	783
3	TraesCS3D01G381900	chr3B	658461397	658464851	3454	False	1070.75	3208	90.13675	1	3098	4	chr3B.!!$F1	3097
4	TraesCS3D01G381900	chr3B	685639072	685639954	882	True	972.00	972	86.95200	895	1759	1	chr3B.!!$R2	864
5	TraesCS3D01G381900	chr3B	685667565	685668446	881	True	970.00	970	86.95200	895	1759	1	chr3B.!!$R3	864
6	TraesCS3D01G381900	chr3A	636571367	636573225	1858	True	2634.00	2634	92.17700	1	1875	1	chr3A.!!$R1	1874
7	TraesCS3D01G381900	chr3A	655925573	655926438	865	True	1027.00	1027	88.28200	895	1759	1	chr3A.!!$R2	864
8	TraesCS3D01G381900	chr3A	658195241	658196119	878	False	990.00	990	87.43000	895	1759	1	chr3A.!!$F1	864
9	TraesCS3D01G381900	chr3A	636564885	636566058	1173	True	874.00	1144	94.30300	1871	3098	2	chr3A.!!$R3	1227
10	TraesCS3D01G381900	chr6B	718808199	718808981	782	False	1181.00	1181	93.91600	2315	3098	1	chr6B.!!$F1	783
11	TraesCS3D01G381900	chr6B	709226458	709227241	783	True	1160.00	1160	93.41800	2315	3098	1	chr6B.!!$R1	783
12	TraesCS3D01G381900	chr5B	572031601	572032382	781	False	1181.00	1181	93.91600	2315	3098	1	chr5B.!!$F1	783
13	TraesCS3D01G381900	chr2B	123553791	123554572	781	False	1170.00	1170	93.66300	2315	3098	1	chr2B.!!$F1	783
14	TraesCS3D01G381900	chr7B	702920257	702921037	780	False	1146.00	1146	93.15600	2315	3098	1	chr7B.!!$F1	783
15	TraesCS3D01G381900	chr1B	56050722	56051494	772	True	1105.00	1105	92.39500	2315	3098	1	chr1B.!!$R1	783
16	TraesCS3D01G381900	chr4B	515704765	515705537	772	True	1094.00	1094	92.14200	2315	3098	1	chr4B.!!$R1	783

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
675	1027	0.039256	GCACGGCAAAAGCTTCATCA	60.039	50.0	0.0	0.0	0.0	3.07	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2419	2859	1.628846	ACAGTGGAGGATTGGGTACAC	59.371	52.381	0.0	0.0	0.0	2.9	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
40	41	5.293643	TCCTCCTCTATTTATTGGGGTTCA	58.706	41.667	0.00	0.00	0.00	3.18
75	76	0.534412	AGGAGTGAGACAAGGATGCG	59.466	55.000	0.00	0.00	0.00	4.73
78	79	0.109086	AGTGAGACAAGGATGCGACG	60.109	55.000	0.00	0.00	0.00	5.12
79	80	0.109272	GTGAGACAAGGATGCGACGA	60.109	55.000	0.00	0.00	0.00	4.20
95	96	1.517913	CGAAGCTGCTGATCTCGCA	60.518	57.895	1.35	9.38	35.80	5.10
103	104	1.613437	TGCTGATCTCGCATATTCGGA	59.387	47.619	6.22	0.00	31.40	4.55
109	110	3.239587	TCTCGCATATTCGGACAACAA	57.760	42.857	0.00	0.00	0.00	2.83
111	112	2.670905	CTCGCATATTCGGACAACAACA	59.329	45.455	0.00	0.00	0.00	3.33
136	137	9.050601	CAATTTCTATCTCTAACCAGGATCAAC	57.949	37.037	0.00	0.00	0.00	3.18
165	166	0.481128	CCCTAGGTTGTTGTTGGGGT	59.519	55.000	8.29	0.00	0.00	4.95
178	179	3.735591	TGTTGGGGTTCTCTTAGTTTCG	58.264	45.455	0.00	0.00	0.00	3.46
180	181	4.344679	TGTTGGGGTTCTCTTAGTTTCGTA	59.655	41.667	0.00	0.00	0.00	3.43
183	184	4.142315	TGGGGTTCTCTTAGTTTCGTATCG	60.142	45.833	0.00	0.00	0.00	2.92
207	208	1.814169	GCGTAGGTAGTTGGCCTGC	60.814	63.158	3.32	0.00	37.54	4.85
208	209	4.515404	GTAGGTAGTTGGCCTGCG	57.485	61.111	3.32	0.00	37.54	5.18
209	210	1.595357	GTAGGTAGTTGGCCTGCGT	59.405	57.895	3.32	0.00	37.54	5.24
225	226	1.268113	GCGTGCCGTCAATTTGTGTG	61.268	55.000	0.00	0.00	0.00	3.82
229	230	1.335780	TGCCGTCAATTTGTGTGATGC	60.336	47.619	0.00	0.00	31.76	3.91
256	257	0.517316	GCAGCCTTTAACTGTCGTGG	59.483	55.000	0.00	0.00	37.47	4.94
266	267	6.395426	TTTAACTGTCGTGGACTCTTTCTA	57.605	37.500	0.00	0.00	33.15	2.10
270	271	4.523173	ACTGTCGTGGACTCTTTCTATTGA	59.477	41.667	0.00	0.00	33.15	2.57
274	275	5.927115	GTCGTGGACTCTTTCTATTGAGTTT	59.073	40.000	0.00	0.00	42.79	2.66
277	278	7.042051	TCGTGGACTCTTTCTATTGAGTTTTTG	60.042	37.037	0.00	0.00	42.79	2.44
302	303	1.549170	GGTTGTACCGGTCACTCTCAT	59.451	52.381	12.40	0.00	0.00	2.90
337	338	4.470602	TCTATAAAGCCGGTCTCTCATCA	58.529	43.478	1.90	0.00	0.00	3.07
346	348	4.558496	GCCGGTCTCTCATCATTTCTCTAG	60.558	50.000	1.90	0.00	0.00	2.43
351	353	7.761704	CGGTCTCTCATCATTTCTCTAGAAAAA	59.238	37.037	9.09	0.00	45.81	1.94
356	358	9.593134	TCTCATCATTTCTCTAGAAAAAGTAGC	57.407	33.333	9.09	0.00	45.81	3.58
478	829	2.071688	ACATCAGTGTTCTCAGCGAC	57.928	50.000	0.00	0.00	34.01	5.19
522	873	2.890474	GCCACCGATGCACTACCG	60.890	66.667	0.00	0.00	0.00	4.02
567	918	1.304713	CCTTGCAGCATGGGAGGTT	60.305	57.895	17.99	0.00	35.86	3.50
586	937	4.641989	AGGTTTCTTATGGCAAGCTACATG	59.358	41.667	8.30	0.00	0.00	3.21
641	993	1.455217	GCTCCCATTGCAGCTCCAT	60.455	57.895	0.00	0.00	32.48	3.41
642	994	1.735376	GCTCCCATTGCAGCTCCATG	61.735	60.000	0.00	0.00	32.48	3.66
675	1027	0.039256	GCACGGCAAAAGCTTCATCA	60.039	50.000	0.00	0.00	0.00	3.07
676	1028	1.602668	GCACGGCAAAAGCTTCATCAA	60.603	47.619	0.00	0.00	0.00	2.57
735	1088	0.250513	GTCCCAAGCTCAATCCGACT	59.749	55.000	0.00	0.00	0.00	4.18
736	1089	1.480954	GTCCCAAGCTCAATCCGACTA	59.519	52.381	0.00	0.00	0.00	2.59
737	1090	1.757118	TCCCAAGCTCAATCCGACTAG	59.243	52.381	0.00	0.00	0.00	2.57
744	1097	3.067461	AGCTCAATCCGACTAGTAGCAAG	59.933	47.826	12.73	0.00	0.00	4.01
828	1181	1.002201	TCGCTTCAAATCCGGTTACCA	59.998	47.619	0.00	0.00	0.00	3.25
924	1280	0.869730	GCGCGTCCTTAAAACTGGAA	59.130	50.000	8.43	0.00	33.72	3.53
977	1356	3.039526	CCCCTCCCCTCCTCCTCT	61.040	72.222	0.00	0.00	0.00	3.69
978	1357	2.652113	CCCCTCCCCTCCTCCTCTT	61.652	68.421	0.00	0.00	0.00	2.85
990	1369	2.112691	TCCTCCTCTTCTCCCTCAAACT	59.887	50.000	0.00	0.00	0.00	2.66
1053	1440	1.817357	TCTACTCAAGCGAGGACGAA	58.183	50.000	0.00	0.00	44.17	3.85
1061	1448	4.065281	CGAGGACGAACCCGCCTT	62.065	66.667	0.00	0.00	40.54	4.35
1074	1461	2.955881	CGCCTTCTTCCCGAACCCT	61.956	63.158	0.00	0.00	0.00	4.34
1200	1593	4.631740	TCACCCACCTCGCCTCCA	62.632	66.667	0.00	0.00	0.00	3.86
1764	2172	2.262915	CGCAAGAGGAAGACGCCT	59.737	61.111	0.00	0.00	42.17	5.52
1914	2322	4.675029	CCGTCGCCCGTCCTGTTT	62.675	66.667	0.00	0.00	33.66	2.83
1915	2323	3.411351	CGTCGCCCGTCCTGTTTG	61.411	66.667	0.00	0.00	0.00	2.93
1916	2324	3.723348	GTCGCCCGTCCTGTTTGC	61.723	66.667	0.00	0.00	0.00	3.68
2113	2521	3.932710	CGCCTAACAGAGTTCTTGCATAA	59.067	43.478	0.00	0.00	0.00	1.90
2146	2554	1.079127	AAGATGTTCACCTCCGGCG	60.079	57.895	0.00	0.00	0.00	6.46
2147	2555	3.195698	GATGTTCACCTCCGGCGC	61.196	66.667	0.00	0.00	0.00	6.53
2197	2624	8.768501	TCTCATCATACCACTAAACTAGTCAT	57.231	34.615	0.00	0.00	36.76	3.06
2198	2625	9.201989	TCTCATCATACCACTAAACTAGTCATT	57.798	33.333	0.00	0.00	36.76	2.57
2277	2712	7.986320	ACTCTATATCGTATACTCTACGGCATT	59.014	37.037	0.56	0.00	40.90	3.56
2278	2713	9.473640	CTCTATATCGTATACTCTACGGCATTA	57.526	37.037	0.56	0.00	40.90	1.90
2279	2714	9.993454	TCTATATCGTATACTCTACGGCATTAT	57.007	33.333	0.56	2.16	40.90	1.28
2347	2782	1.271856	TCTCACCCGATGGCAGTTAA	58.728	50.000	0.00	0.00	33.59	2.01
2419	2859	6.387041	TGGTATCTTAACTAGGACGTGATG	57.613	41.667	0.00	0.00	0.00	3.07
2581	3022	0.944311	CCGTGTCCTGTTGTTCTCCG	60.944	60.000	0.00	0.00	0.00	4.63
2628	3070	4.707448	TCTCTGTTCTAGGCTAGAAACAGG	59.293	45.833	35.00	29.74	45.56	4.00
2651	3093	1.286248	AGATTTGCTTACCGGGGTCT	58.714	50.000	6.32	0.00	0.00	3.85
2652	3094	1.065418	AGATTTGCTTACCGGGGTCTG	60.065	52.381	6.32	0.00	0.00	3.51
2860	3427	4.937620	TGAACTGAAGATGTGCTTGGTATC	59.062	41.667	0.00	0.00	36.83	2.24
2882	3449	7.602517	ATCTTACATGTGCTCAGAACTTAAC	57.397	36.000	9.11	0.00	0.00	2.01
3014	3581	2.790433	TGTTGTTTGGAGGATACAGGC	58.210	47.619	0.00	0.00	41.41	4.85
3038	3605	4.255833	TGTTCATTGTTGGATTTCTGGC	57.744	40.909	0.00	0.00	0.00	4.85

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
40	41	4.783227	TCACTCCTTAGGGCATTTCTAACT	59.217	41.667	0.00	0.00	0.00	2.24
75	76	1.478622	GCGAGATCAGCAGCTTCGTC	61.479	60.000	14.21	3.72	34.19	4.20
78	79	4.509756	TGCGAGATCAGCAGCTTC	57.490	55.556	11.17	0.00	40.01	3.86
95	96	9.396022	AGATAGAAATTGTTGTTGTCCGAATAT	57.604	29.630	0.00	0.00	0.00	1.28
103	104	8.918202	TGGTTAGAGATAGAAATTGTTGTTGT	57.082	30.769	0.00	0.00	0.00	3.32
109	110	8.324191	TGATCCTGGTTAGAGATAGAAATTGT	57.676	34.615	0.00	0.00	0.00	2.71
111	112	8.214364	GGTTGATCCTGGTTAGAGATAGAAATT	58.786	37.037	0.00	0.00	0.00	1.82
144	145	0.178975	CCCAACAACAACCTAGGGCA	60.179	55.000	14.81	0.00	0.00	5.36
165	166	6.129009	GCACAAACGATACGAAACTAAGAGAA	60.129	38.462	0.00	0.00	0.00	2.87
178	179	3.762779	ACTACCTACGCACAAACGATAC	58.237	45.455	0.00	0.00	36.70	2.24
180	181	2.991190	CAACTACCTACGCACAAACGAT	59.009	45.455	0.00	0.00	36.70	3.73
183	184	1.196127	GCCAACTACCTACGCACAAAC	59.804	52.381	0.00	0.00	0.00	2.93
208	209	2.318578	CATCACACAAATTGACGGCAC	58.681	47.619	0.00	0.00	0.00	5.01
209	210	1.335780	GCATCACACAAATTGACGGCA	60.336	47.619	0.00	0.00	30.64	5.69
256	257	7.511959	ACCCAAAAACTCAATAGAAAGAGTC	57.488	36.000	0.00	0.00	43.88	3.36
266	267	4.835284	ACAACCAACCCAAAAACTCAAT	57.165	36.364	0.00	0.00	0.00	2.57
270	271	2.427812	CGGTACAACCAACCCAAAAACT	59.572	45.455	0.00	0.00	38.47	2.66
274	275	0.258194	ACCGGTACAACCAACCCAAA	59.742	50.000	4.49	0.00	38.47	3.28
277	278	0.886043	GTGACCGGTACAACCAACCC	60.886	60.000	7.34	0.00	38.47	4.11
324	325	4.824537	TCTAGAGAAATGATGAGAGACCGG	59.175	45.833	0.00	0.00	0.00	5.28
325	326	6.384258	TTCTAGAGAAATGATGAGAGACCG	57.616	41.667	0.00	0.00	0.00	4.79
337	338	9.160496	CTGATGTGCTACTTTTTCTAGAGAAAT	57.840	33.333	8.75	3.32	42.83	2.17
346	348	2.509870	GCGCTGATGTGCTACTTTTTC	58.490	47.619	0.00	0.00	45.43	2.29
356	358	1.442526	GGATCAAGGGCGCTGATGTG	61.443	60.000	14.59	7.06	33.63	3.21
478	829	2.551270	GAAGTGTTGCGACGCAGG	59.449	61.111	23.18	0.00	40.61	4.85
563	914	4.301072	TGTAGCTTGCCATAAGAAACCT	57.699	40.909	0.00	0.00	0.00	3.50
567	918	2.951642	GCCATGTAGCTTGCCATAAGAA	59.048	45.455	0.00	0.00	0.00	2.52
586	937	3.138798	CTGCCATGGAGTGCTGCC	61.139	66.667	18.40	0.00	0.00	4.85
613	965	3.757248	AATGGGAGCATCGTCGGGC	62.757	63.158	0.00	0.00	34.37	6.13
735	1088	1.135228	TGCGCACGATTCTTGCTACTA	60.135	47.619	5.66	0.00	37.87	1.82
736	1089	0.389817	TGCGCACGATTCTTGCTACT	60.390	50.000	5.66	0.00	37.87	2.57
737	1090	0.247301	GTGCGCACGATTCTTGCTAC	60.247	55.000	26.77	8.17	37.87	3.58
744	1097	2.202349	GCCAAGTGCGCACGATTC	60.202	61.111	32.94	20.10	36.20	2.52
967	1346	0.633921	TGAGGGAGAAGAGGAGGAGG	59.366	60.000	0.00	0.00	0.00	4.30
968	1347	2.499693	GTTTGAGGGAGAAGAGGAGGAG	59.500	54.545	0.00	0.00	0.00	3.69
969	1348	2.112691	AGTTTGAGGGAGAAGAGGAGGA	59.887	50.000	0.00	0.00	0.00	3.71
970	1349	2.499693	GAGTTTGAGGGAGAAGAGGAGG	59.500	54.545	0.00	0.00	0.00	4.30
971	1350	3.440127	AGAGTTTGAGGGAGAAGAGGAG	58.560	50.000	0.00	0.00	0.00	3.69
977	1356	2.188817	GGGCTAGAGTTTGAGGGAGAA	58.811	52.381	0.00	0.00	0.00	2.87
978	1357	1.622725	GGGGCTAGAGTTTGAGGGAGA	60.623	57.143	0.00	0.00	0.00	3.71
1053	1440	2.926242	TTCGGGAAGAAGGCGGGT	60.926	61.111	0.00	0.00	34.26	5.28
1061	1448	2.547171	AACCAAGGGTTCGGGAAGA	58.453	52.632	0.00	0.00	43.05	2.87
1074	1461	0.618458	CTCCCTCCCATTCGAACCAA	59.382	55.000	0.00	0.00	0.00	3.67
1317	1722	3.537206	GAACTGGCTGGTGGCGTCT	62.537	63.158	0.00	0.00	42.94	4.18
1328	1733	2.035442	GCCTCGTGGAAGAACTGGC	61.035	63.158	7.92	0.00	34.57	4.85
1329	1734	0.671781	CTGCCTCGTGGAAGAACTGG	60.672	60.000	5.50	0.00	41.82	4.00
1910	2318	4.344865	GAGGGGGCGAGGCAAACA	62.345	66.667	0.00	0.00	0.00	2.83
1977	2385	1.860641	TCTCTGGGTCCGCAAGAATA	58.139	50.000	0.00	0.00	43.02	1.75
2146	2554	4.759782	TGAATAACTGAAGCAGTAGAGGC	58.240	43.478	0.00	0.00	44.62	4.70
2147	2555	6.634805	TCTTGAATAACTGAAGCAGTAGAGG	58.365	40.000	0.00	0.00	44.62	3.69
2197	2624	9.563748	ACAAAGTAAGCATAACAGTAAAGGTAA	57.436	29.630	0.00	0.00	0.00	2.85
2198	2625	9.563748	AACAAAGTAAGCATAACAGTAAAGGTA	57.436	29.630	0.00	0.00	0.00	3.08
2261	2696	7.595502	GCCATGATATAATGCCGTAGAGTATAC	59.404	40.741	0.00	0.00	0.00	1.47
2277	2712	5.624159	CTCCCAAAACTGAGCCATGATATA	58.376	41.667	0.00	0.00	0.00	0.86
2278	2713	4.467769	CTCCCAAAACTGAGCCATGATAT	58.532	43.478	0.00	0.00	0.00	1.63
2279	2714	3.889815	CTCCCAAAACTGAGCCATGATA	58.110	45.455	0.00	0.00	0.00	2.15
2280	2715	2.731572	CTCCCAAAACTGAGCCATGAT	58.268	47.619	0.00	0.00	0.00	2.45
2281	2716	1.887956	GCTCCCAAAACTGAGCCATGA	60.888	52.381	0.00	0.00	34.86	3.07
2347	2782	7.339466	ACACAACCAAGAGTCAAAAGTAATTCT	59.661	33.333	0.00	0.00	0.00	2.40
2419	2859	1.628846	ACAGTGGAGGATTGGGTACAC	59.371	52.381	0.00	0.00	0.00	2.90
2628	3070	3.349927	ACCCCGGTAAGCAAATCTAAAC	58.650	45.455	0.00	0.00	0.00	2.01
2651	3093	2.301583	TGCAGCATACAGTAGTTCCACA	59.698	45.455	0.00	0.00	0.00	4.17
2652	3094	2.932614	CTGCAGCATACAGTAGTTCCAC	59.067	50.000	0.00	0.00	0.00	4.02
2703	3186	0.881118	GTCCGGCTGCATTCAGAAAA	59.119	50.000	0.50	0.00	42.95	2.29
2704	3187	0.036732	AGTCCGGCTGCATTCAGAAA	59.963	50.000	0.50	0.00	42.95	2.52
2705	3188	0.036732	AAGTCCGGCTGCATTCAGAA	59.963	50.000	0.50	0.00	42.95	3.02
2706	3189	0.901827	TAAGTCCGGCTGCATTCAGA	59.098	50.000	0.50	0.00	42.95	3.27
2707	3190	1.600957	CATAAGTCCGGCTGCATTCAG	59.399	52.381	0.50	0.00	43.16	3.02
2815	3382	4.388773	CACTACAGCAATCGAGCTACAAAA	59.611	41.667	0.00	0.00	44.54	2.44
2860	3427	8.598924	CATAGTTAAGTTCTGAGCACATGTAAG	58.401	37.037	0.00	0.00	0.00	2.34
2899	3466	9.866936	CACAAATTGTGTCAGGATTTTTATTTG	57.133	29.630	17.29	0.00	43.08	2.32
3014	3581	4.681025	CCAGAAATCCAACAATGAACAACG	59.319	41.667	0.00	0.00	0.00	4.10
3038	3605	6.404342	CTGTAAGATCGTTGTGGAGTAACGG	61.404	48.000	9.91	0.00	43.45	4.44

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.