Multiple sequence alignment - TraesCS3D01G381700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G381700 chr3D 100.000 3014 0 0 1 3014 497821425 497818412 0.000000e+00 5566.0
1 TraesCS3D01G381700 chr3D 84.032 739 99 14 998 1722 497809794 497809061 0.000000e+00 693.0
2 TraesCS3D01G381700 chr3D 87.071 379 47 2 1331 1708 497825873 497825496 7.720000e-116 427.0
3 TraesCS3D01G381700 chr3D 88.525 244 24 3 998 1239 497827918 497827677 2.940000e-75 292.0
4 TraesCS3D01G381700 chr3D 84.030 263 38 3 1810 2069 497808997 497808736 1.790000e-62 250.0
5 TraesCS3D01G381700 chr3D 88.235 187 22 0 998 1184 518754224 518754410 1.090000e-54 224.0
6 TraesCS3D01G381700 chr3D 87.879 66 7 1 192 256 540109166 540109101 3.220000e-10 76.8
7 TraesCS3D01G381700 chr3A 90.619 1631 91 32 607 2204 636693583 636695184 0.000000e+00 2108.0
8 TraesCS3D01G381700 chr3A 91.340 612 44 7 1 609 636692946 636693551 0.000000e+00 828.0
9 TraesCS3D01G381700 chr3A 86.311 431 51 7 1298 1722 636698246 636698674 2.120000e-126 462.0
10 TraesCS3D01G381700 chr3A 87.302 378 46 2 1331 1707 636690395 636690771 5.970000e-117 431.0
11 TraesCS3D01G381700 chr3A 89.167 240 26 0 998 1237 636697926 636698165 1.760000e-77 300.0
12 TraesCS3D01G381700 chr3A 88.750 240 27 0 1804 2043 636698732 636698971 8.170000e-76 294.0
13 TraesCS3D01G381700 chr3A 88.115 244 25 3 998 1239 636687003 636687244 1.370000e-73 287.0
14 TraesCS3D01G381700 chr3A 86.842 76 6 2 184 258 487477785 487477713 6.930000e-12 82.4
15 TraesCS3D01G381700 chr3A 86.111 72 9 1 188 258 60660731 60660802 3.220000e-10 76.8
16 TraesCS3D01G381700 chr3B 90.248 1651 92 30 607 2206 658060565 658058933 0.000000e+00 2093.0
17 TraesCS3D01G381700 chr3B 89.936 626 49 6 1 612 658061226 658060601 0.000000e+00 795.0
18 TraesCS3D01G381700 chr3B 84.711 726 90 10 998 1722 657954307 657953602 0.000000e+00 706.0
19 TraesCS3D01G381700 chr3B 89.376 433 23 9 2399 2816 658058502 658058078 9.570000e-145 523.0
20 TraesCS3D01G381700 chr3B 84.958 472 48 11 998 1468 658019692 658019243 9.850000e-125 457.0
21 TraesCS3D01G381700 chr3B 85.488 379 51 4 1331 1707 658063215 658062839 2.820000e-105 392.0
22 TraesCS3D01G381700 chr3B 87.295 244 27 3 998 1239 658065132 658064891 2.960000e-70 276.0
23 TraesCS3D01G381700 chr3B 86.522 230 29 2 1810 2038 657953538 657953310 4.990000e-63 252.0
24 TraesCS3D01G381700 chr3B 95.349 43 2 0 2365 2407 658058937 658058895 5.390000e-08 69.4
25 TraesCS3D01G381700 chr6B 90.031 321 29 2 1297 1617 11573036 11572719 2.160000e-111 412.0
26 TraesCS3D01G381700 chr5B 93.064 173 8 1 2196 2368 607453230 607453398 1.790000e-62 250.0
27 TraesCS3D01G381700 chr5B 88.158 76 5 4 186 257 636990804 636990729 1.490000e-13 87.9
28 TraesCS3D01G381700 chr7B 90.964 166 13 2 2205 2369 10573390 10573226 3.910000e-54 222.0
29 TraesCS3D01G381700 chr2D 91.892 148 12 0 2222 2369 77420297 77420444 1.100000e-49 207.0
30 TraesCS3D01G381700 chr2D 89.222 167 12 5 2205 2366 606132256 606132091 1.420000e-48 204.0
31 TraesCS3D01G381700 chr2D 86.452 155 20 1 2205 2359 353029418 353029571 5.170000e-38 169.0
32 TraesCS3D01G381700 chr2D 89.474 76 5 3 184 257 632441177 632441251 3.200000e-15 93.5
33 TraesCS3D01G381700 chr2A 89.172 157 17 0 2210 2366 189942372 189942216 2.370000e-46 196.0
34 TraesCS3D01G381700 chr6A 88.485 165 13 3 2210 2369 46938495 46938658 8.530000e-46 195.0
35 TraesCS3D01G381700 chr4A 86.709 158 20 1 2205 2362 586680332 586680176 1.110000e-39 174.0
36 TraesCS3D01G381700 chr2B 84.940 166 22 3 2195 2359 748590367 748590204 6.680000e-37 165.0
37 TraesCS3D01G381700 chr1A 91.803 61 4 1 199 258 344467090 344467030 1.930000e-12 84.2
38 TraesCS3D01G381700 chr1A 85.484 62 8 1 195 256 2489866 2489806 2.510000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G381700 chr3D 497818412 497821425 3013 True 5566.000000 5566 100.000000 1 3014 1 chr3D.!!$R1 3013
1 TraesCS3D01G381700 chr3D 497808736 497809794 1058 True 471.500000 693 84.031000 998 2069 2 chr3D.!!$R3 1071
2 TraesCS3D01G381700 chr3D 497825496 497827918 2422 True 359.500000 427 87.798000 998 1708 2 chr3D.!!$R4 710
3 TraesCS3D01G381700 chr3A 636687003 636698971 11968 False 672.857143 2108 88.800571 1 2204 7 chr3A.!!$F2 2203
4 TraesCS3D01G381700 chr3B 658058078 658065132 7054 True 691.400000 2093 89.615333 1 2816 6 chr3B.!!$R3 2815
5 TraesCS3D01G381700 chr3B 657953310 657954307 997 True 479.000000 706 85.616500 998 2038 2 chr3B.!!$R2 1040

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
987 8086 0.391395 TACCATACCAAACACCGCCG 60.391 55.0 0.0 0.0 0.0 6.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2235 11085 0.03601 ACCATTTCAGCTCCACGGAG 60.036 55.0 8.84 8.84 44.56 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
121 7137 1.066002 GATGCCCACATACATGCACAC 59.934 52.381 0.00 0.00 36.35 3.82
137 7153 3.049912 GCACACGCATATTCATAGTCGA 58.950 45.455 0.00 0.00 38.36 4.20
139 7155 3.117994 CACACGCATATTCATAGTCGACG 59.882 47.826 10.46 0.00 0.00 5.12
144 7160 4.495422 GCATATTCATAGTCGACGGGAAT 58.505 43.478 24.88 24.88 33.22 3.01
208 7224 2.158143 AGTCTAGGACTTGAACCCTGGT 60.158 50.000 0.00 0.00 40.28 4.00
225 7241 2.515398 TGGCTGGTTCCACCACAG 59.485 61.111 8.36 0.00 44.79 3.66
261 7277 1.805945 GCTACGCTCAGTTCGGTGG 60.806 63.158 0.00 0.00 0.00 4.61
266 7282 1.079336 GCTCAGTTCGGTGGTACCC 60.079 63.158 10.07 0.11 33.75 3.69
269 7285 1.071071 CTCAGTTCGGTGGTACCCAAA 59.929 52.381 10.07 0.00 34.18 3.28
270 7286 1.071071 TCAGTTCGGTGGTACCCAAAG 59.929 52.381 10.07 0.00 34.18 2.77
271 7287 1.071071 CAGTTCGGTGGTACCCAAAGA 59.929 52.381 10.07 0.71 34.18 2.52
415 7440 7.103641 CCACTAGCCATTAAGTTAGACTGAAA 58.896 38.462 0.00 0.00 0.00 2.69
460 7486 8.424918 ACTAGCCATATTAGTCATGTATATGCC 58.575 37.037 0.00 0.00 33.12 4.40
486 7512 7.009357 CGGTAAGCAGACTAACTTGATAAAGAC 59.991 40.741 0.00 0.00 0.00 3.01
536 7563 7.745620 TGATCACCCTTTAGTTCTCTTTTTC 57.254 36.000 0.00 0.00 0.00 2.29
565 7592 1.420138 TGGCCTTATAGGTTAGCTGCC 59.580 52.381 3.32 0.00 37.80 4.85
575 7602 1.066787 GGTTAGCTGCCGAGTTCTTCT 60.067 52.381 0.00 0.00 0.00 2.85
598 7628 4.069304 CAACGAAGTAATCAAGGGGTCAA 58.931 43.478 0.00 0.00 45.00 3.18
601 7631 4.517832 ACGAAGTAATCAAGGGGTCAAAAC 59.482 41.667 0.00 0.00 41.94 2.43
668 7739 2.774687 AGGGGTCACGTGTTCAATTAC 58.225 47.619 16.51 3.99 0.00 1.89
699 7770 3.435105 GAGATCAACTCTCGACTGCAT 57.565 47.619 0.00 0.00 41.07 3.96
701 7772 4.926244 GAGATCAACTCTCGACTGCATTA 58.074 43.478 0.00 0.00 41.07 1.90
702 7773 4.930963 AGATCAACTCTCGACTGCATTAG 58.069 43.478 0.00 0.00 0.00 1.73
703 7774 4.400884 AGATCAACTCTCGACTGCATTAGT 59.599 41.667 0.00 0.00 44.02 2.24
705 7776 5.236655 TCAACTCTCGACTGCATTAGTAG 57.763 43.478 0.00 0.00 40.53 2.57
714 7785 3.775202 ACTGCATTAGTAGTCTTGCGAG 58.225 45.455 0.00 0.00 35.69 5.03
715 7786 3.193691 ACTGCATTAGTAGTCTTGCGAGT 59.806 43.478 0.00 0.00 35.69 4.18
716 7787 3.511699 TGCATTAGTAGTCTTGCGAGTG 58.488 45.455 0.00 0.00 37.92 3.51
718 7789 4.157105 TGCATTAGTAGTCTTGCGAGTGTA 59.843 41.667 0.00 0.00 37.92 2.90
720 7791 5.637809 CATTAGTAGTCTTGCGAGTGTACA 58.362 41.667 14.24 0.00 0.00 2.90
722 7793 3.147629 AGTAGTCTTGCGAGTGTACACT 58.852 45.455 28.27 28.27 45.84 3.55
738 7809 7.970102 AGTGTACACTCCTGGAGTAATTTTTA 58.030 34.615 27.91 10.32 41.37 1.52
739 7810 8.603304 AGTGTACACTCCTGGAGTAATTTTTAT 58.397 33.333 27.91 8.59 41.37 1.40
740 7811 8.665685 GTGTACACTCCTGGAGTAATTTTTATG 58.334 37.037 27.91 14.99 41.37 1.90
742 7813 7.923414 ACACTCCTGGAGTAATTTTTATGTC 57.077 36.000 27.91 0.00 41.37 3.06
743 7814 7.690256 ACACTCCTGGAGTAATTTTTATGTCT 58.310 34.615 27.91 0.00 41.37 3.41
792 7887 8.087750 CCTTTCCTTGCAACTGTATTTTATTCA 58.912 33.333 0.00 0.00 0.00 2.57
817 7912 5.491982 ACAGATTATGTCAAGGACTCCAAC 58.508 41.667 0.00 0.00 37.75 3.77
818 7913 4.878397 CAGATTATGTCAAGGACTCCAACC 59.122 45.833 0.00 0.00 33.15 3.77
819 7914 3.713826 TTATGTCAAGGACTCCAACCC 57.286 47.619 0.00 0.00 33.15 4.11
826 7921 0.923358 AGGACTCCAACCCAACACAA 59.077 50.000 0.00 0.00 0.00 3.33
913 8012 3.202001 GCTCGCAGCGCCCATAAA 61.202 61.111 10.87 0.00 28.33 1.40
921 8020 1.347707 CAGCGCCCATAAATAGAGGGA 59.652 52.381 2.29 0.00 45.80 4.20
937 8036 1.227674 GGACTGCCGGTGATGGATC 60.228 63.158 1.90 0.00 0.00 3.36
951 8050 4.116878 GATCGGACAGAGCCAAGC 57.883 61.111 0.00 0.00 0.00 4.01
965 8064 1.368579 CAAGCCAAGCCCAAACCAG 59.631 57.895 0.00 0.00 0.00 4.00
970 8069 1.534729 CCAAGCCCAAACCAGAGTAC 58.465 55.000 0.00 0.00 0.00 2.73
973 8072 1.372501 AGCCCAAACCAGAGTACCAT 58.627 50.000 0.00 0.00 0.00 3.55
976 8075 2.682858 GCCCAAACCAGAGTACCATACC 60.683 54.545 0.00 0.00 0.00 2.73
977 8076 2.574369 CCCAAACCAGAGTACCATACCA 59.426 50.000 0.00 0.00 0.00 3.25
978 8077 3.009695 CCCAAACCAGAGTACCATACCAA 59.990 47.826 0.00 0.00 0.00 3.67
981 8080 4.986054 AACCAGAGTACCATACCAAACA 57.014 40.909 0.00 0.00 0.00 2.83
982 8081 4.281898 ACCAGAGTACCATACCAAACAC 57.718 45.455 0.00 0.00 0.00 3.32
984 8083 3.259064 CAGAGTACCATACCAAACACCG 58.741 50.000 0.00 0.00 0.00 4.94
985 8084 2.004733 GAGTACCATACCAAACACCGC 58.995 52.381 0.00 0.00 0.00 5.68
986 8085 1.089112 GTACCATACCAAACACCGCC 58.911 55.000 0.00 0.00 0.00 6.13
987 8086 0.391395 TACCATACCAAACACCGCCG 60.391 55.000 0.00 0.00 0.00 6.46
988 8087 1.673009 CCATACCAAACACCGCCGT 60.673 57.895 0.00 0.00 0.00 5.68
989 8088 1.641123 CCATACCAAACACCGCCGTC 61.641 60.000 0.00 0.00 0.00 4.79
990 8089 1.738830 ATACCAAACACCGCCGTCG 60.739 57.895 0.00 0.00 0.00 5.12
991 8090 2.438951 ATACCAAACACCGCCGTCGT 62.439 55.000 0.00 0.00 0.00 4.34
1515 10326 2.644212 CCAGCTCTCCGTGCAGACT 61.644 63.158 0.00 0.00 0.00 3.24
1729 10540 1.888215 ATTGACCATGGCTATGAGCG 58.112 50.000 13.04 0.00 43.62 5.03
1730 10541 0.829990 TTGACCATGGCTATGAGCGA 59.170 50.000 13.04 0.00 43.62 4.93
1732 10543 0.948141 GACCATGGCTATGAGCGAGC 60.948 60.000 13.04 0.00 43.62 5.03
1760 10571 5.030874 ACGAACTTGATTGGAAATTCGAC 57.969 39.130 10.78 0.00 40.96 4.20
1984 10808 1.645034 CAACACCAGCATCTCCTACG 58.355 55.000 0.00 0.00 0.00 3.51
2022 10846 2.800544 CACGAAGATATAACGGCCTTGG 59.199 50.000 0.00 0.00 0.00 3.61
2069 10896 2.303022 TGAGACCATGAGGAACTGAACC 59.697 50.000 0.00 0.00 41.55 3.62
2070 10897 2.569404 GAGACCATGAGGAACTGAACCT 59.431 50.000 0.00 0.00 41.55 3.50
2150 11000 4.686839 TGTCTATGTTCTCACGACTCTG 57.313 45.455 0.00 0.00 32.33 3.35
2151 11001 3.119814 TGTCTATGTTCTCACGACTCTGC 60.120 47.826 0.00 0.00 32.33 4.26
2154 11004 2.423926 TGTTCTCACGACTCTGCTTC 57.576 50.000 0.00 0.00 0.00 3.86
2201 11051 8.958506 TGAAAGTTAGGAATCTAGAGTAGACAC 58.041 37.037 0.00 0.00 37.69 3.67
2202 11052 9.181061 GAAAGTTAGGAATCTAGAGTAGACACT 57.819 37.037 0.00 0.00 37.69 3.55
2203 11053 9.536510 AAAGTTAGGAATCTAGAGTAGACACTT 57.463 33.333 0.00 0.52 37.69 3.16
2205 11055 9.841295 AGTTAGGAATCTAGAGTAGACACTTAG 57.159 37.037 0.00 0.00 37.69 2.18
2206 11056 9.059260 GTTAGGAATCTAGAGTAGACACTTAGG 57.941 40.741 0.00 0.00 37.69 2.69
2207 11057 6.607019 AGGAATCTAGAGTAGACACTTAGGG 58.393 44.000 0.00 0.00 37.69 3.53
2208 11058 6.160814 AGGAATCTAGAGTAGACACTTAGGGT 59.839 42.308 0.00 0.00 37.69 4.34
2209 11059 6.487668 GGAATCTAGAGTAGACACTTAGGGTC 59.512 46.154 6.50 6.50 37.69 4.46
2210 11060 5.370875 TCTAGAGTAGACACTTAGGGTCC 57.629 47.826 11.43 0.00 34.21 4.46
2211 11061 3.002038 AGAGTAGACACTTAGGGTCCG 57.998 52.381 11.43 0.00 34.21 4.79
2212 11062 2.308275 AGAGTAGACACTTAGGGTCCGT 59.692 50.000 11.43 0.00 34.21 4.69
2213 11063 3.087781 GAGTAGACACTTAGGGTCCGTT 58.912 50.000 11.43 0.00 34.21 4.44
2214 11064 3.087781 AGTAGACACTTAGGGTCCGTTC 58.912 50.000 11.43 0.00 35.89 3.95
2215 11065 0.886563 AGACACTTAGGGTCCGTTCG 59.113 55.000 11.43 0.00 35.89 3.95
2216 11066 0.108945 GACACTTAGGGTCCGTTCGG 60.109 60.000 2.67 4.74 0.00 4.30
2217 11067 1.217244 CACTTAGGGTCCGTTCGGG 59.783 63.158 11.37 0.00 37.02 5.14
2218 11068 1.077265 ACTTAGGGTCCGTTCGGGA 59.923 57.895 11.37 0.00 44.68 5.14
2225 11075 3.053828 TCCGTTCGGGAACACTCC 58.946 61.111 11.37 0.00 43.62 3.85
2226 11076 2.922950 TCCGTTCGGGAACACTCCG 61.923 63.158 11.37 0.00 43.62 4.63
2227 11077 2.431942 CGTTCGGGAACACTCCGG 60.432 66.667 11.69 0.00 46.78 5.14
2228 11078 2.741211 GTTCGGGAACACTCCGGC 60.741 66.667 0.00 0.00 46.78 6.13
2229 11079 2.920912 TTCGGGAACACTCCGGCT 60.921 61.111 0.00 0.00 46.78 5.52
2230 11080 2.939261 TTCGGGAACACTCCGGCTC 61.939 63.158 0.00 0.00 46.78 4.70
2231 11081 4.452733 CGGGAACACTCCGGCTCC 62.453 72.222 0.00 0.00 43.51 4.70
2232 11082 4.097361 GGGAACACTCCGGCTCCC 62.097 72.222 0.00 2.93 43.51 4.30
2233 11083 3.319198 GGAACACTCCGGCTCCCA 61.319 66.667 0.00 0.00 30.03 4.37
2234 11084 2.747686 GAACACTCCGGCTCCCAA 59.252 61.111 0.00 0.00 0.00 4.12
2235 11085 1.671379 GAACACTCCGGCTCCCAAC 60.671 63.158 0.00 0.00 0.00 3.77
2236 11086 2.113243 GAACACTCCGGCTCCCAACT 62.113 60.000 0.00 0.00 0.00 3.16
2237 11087 2.113243 AACACTCCGGCTCCCAACTC 62.113 60.000 0.00 0.00 0.00 3.01
2238 11088 3.003763 ACTCCGGCTCCCAACTCC 61.004 66.667 0.00 0.00 0.00 3.85
2239 11089 4.148825 CTCCGGCTCCCAACTCCG 62.149 72.222 0.00 0.00 42.58 4.63
2241 11091 4.760047 CCGGCTCCCAACTCCGTG 62.760 72.222 0.00 0.00 41.46 4.94
2242 11092 4.760047 CGGCTCCCAACTCCGTGG 62.760 72.222 0.00 0.00 38.47 4.94
2243 11093 3.319198 GGCTCCCAACTCCGTGGA 61.319 66.667 0.00 0.00 41.65 4.02
2244 11094 2.266055 GCTCCCAACTCCGTGGAG 59.734 66.667 14.35 14.35 46.87 3.86
2245 11095 2.266055 CTCCCAACTCCGTGGAGC 59.734 66.667 15.80 0.00 45.54 4.70
2246 11096 2.203788 TCCCAACTCCGTGGAGCT 60.204 61.111 15.80 0.28 45.54 4.09
2247 11097 2.046892 CCCAACTCCGTGGAGCTG 60.047 66.667 15.80 13.51 45.54 4.24
2248 11098 2.583441 CCCAACTCCGTGGAGCTGA 61.583 63.158 18.56 0.00 45.54 4.26
2249 11099 1.371183 CCAACTCCGTGGAGCTGAA 59.629 57.895 18.56 0.00 45.54 3.02
2250 11100 0.250295 CCAACTCCGTGGAGCTGAAA 60.250 55.000 18.56 0.00 45.54 2.69
2251 11101 1.611673 CCAACTCCGTGGAGCTGAAAT 60.612 52.381 18.56 0.00 45.54 2.17
2252 11102 1.466167 CAACTCCGTGGAGCTGAAATG 59.534 52.381 15.80 2.63 45.54 2.32
2253 11103 0.036010 ACTCCGTGGAGCTGAAATGG 60.036 55.000 15.80 0.00 45.54 3.16
2254 11104 0.036010 CTCCGTGGAGCTGAAATGGT 60.036 55.000 2.38 0.00 35.31 3.55
2255 11105 0.321564 TCCGTGGAGCTGAAATGGTG 60.322 55.000 0.00 0.00 0.00 4.17
2256 11106 1.308069 CCGTGGAGCTGAAATGGTGG 61.308 60.000 0.00 0.00 0.00 4.61
2257 11107 0.321564 CGTGGAGCTGAAATGGTGGA 60.322 55.000 0.00 0.00 0.00 4.02
2258 11108 1.457346 GTGGAGCTGAAATGGTGGAG 58.543 55.000 0.00 0.00 0.00 3.86
2259 11109 0.322816 TGGAGCTGAAATGGTGGAGC 60.323 55.000 0.00 0.00 0.00 4.70
2260 11110 1.372087 GGAGCTGAAATGGTGGAGCG 61.372 60.000 0.00 0.00 36.52 5.03
2261 11111 1.372087 GAGCTGAAATGGTGGAGCGG 61.372 60.000 0.00 0.00 36.52 5.52
2262 11112 1.377202 GCTGAAATGGTGGAGCGGA 60.377 57.895 0.00 0.00 0.00 5.54
2263 11113 1.372087 GCTGAAATGGTGGAGCGGAG 61.372 60.000 0.00 0.00 0.00 4.63
2281 11131 3.765972 CGGCGCGCAATTCATTTT 58.234 50.000 34.42 0.00 0.00 1.82
2282 11132 2.069237 CGGCGCGCAATTCATTTTT 58.931 47.368 34.42 0.00 0.00 1.94
2283 11133 0.246834 CGGCGCGCAATTCATTTTTG 60.247 50.000 34.42 2.99 0.00 2.44
2284 11134 0.789601 GGCGCGCAATTCATTTTTGT 59.210 45.000 34.42 0.00 0.00 2.83
2285 11135 1.462214 GGCGCGCAATTCATTTTTGTG 60.462 47.619 34.42 0.00 37.58 3.33
2286 11136 1.462214 GCGCGCAATTCATTTTTGTGG 60.462 47.619 29.10 0.00 35.61 4.17
2287 11137 2.057316 CGCGCAATTCATTTTTGTGGA 58.943 42.857 8.75 0.00 35.61 4.02
2288 11138 2.090967 CGCGCAATTCATTTTTGTGGAG 59.909 45.455 8.75 0.00 35.61 3.86
2289 11139 2.159801 GCGCAATTCATTTTTGTGGAGC 60.160 45.455 0.30 0.00 35.61 4.70
2290 11140 3.058450 CGCAATTCATTTTTGTGGAGCA 58.942 40.909 0.00 0.00 32.32 4.26
2291 11141 3.122278 CGCAATTCATTTTTGTGGAGCAG 59.878 43.478 0.00 0.00 32.32 4.24
2292 11142 3.120442 GCAATTCATTTTTGTGGAGCAGC 60.120 43.478 0.00 0.00 0.00 5.25
2293 11143 4.312443 CAATTCATTTTTGTGGAGCAGCT 58.688 39.130 0.00 0.00 0.00 4.24
2294 11144 5.472148 CAATTCATTTTTGTGGAGCAGCTA 58.528 37.500 0.00 0.00 0.00 3.32
2295 11145 5.927281 ATTCATTTTTGTGGAGCAGCTAT 57.073 34.783 0.00 0.00 0.00 2.97
2296 11146 5.726980 TTCATTTTTGTGGAGCAGCTATT 57.273 34.783 0.00 0.00 0.00 1.73
2297 11147 5.314923 TCATTTTTGTGGAGCAGCTATTC 57.685 39.130 0.00 0.00 0.00 1.75
2298 11148 5.012239 TCATTTTTGTGGAGCAGCTATTCT 58.988 37.500 0.00 0.00 0.00 2.40
2299 11149 4.771590 TTTTTGTGGAGCAGCTATTCTG 57.228 40.909 0.00 0.00 45.62 3.02
2300 11150 3.423539 TTTGTGGAGCAGCTATTCTGT 57.576 42.857 0.00 0.00 44.66 3.41
2301 11151 2.680312 TGTGGAGCAGCTATTCTGTC 57.320 50.000 0.00 0.00 44.66 3.51
2302 11152 1.134995 TGTGGAGCAGCTATTCTGTCG 60.135 52.381 0.00 0.00 44.66 4.35
2303 11153 0.179100 TGGAGCAGCTATTCTGTCGC 60.179 55.000 0.00 0.00 44.66 5.19
2304 11154 0.103937 GGAGCAGCTATTCTGTCGCT 59.896 55.000 0.00 0.00 44.66 4.93
2305 11155 1.486439 GAGCAGCTATTCTGTCGCTC 58.514 55.000 0.00 3.05 44.66 5.03
2306 11156 0.103937 AGCAGCTATTCTGTCGCTCC 59.896 55.000 0.00 0.00 44.66 4.70
2307 11157 0.103937 GCAGCTATTCTGTCGCTCCT 59.896 55.000 0.00 0.00 44.66 3.69
2308 11158 1.867698 GCAGCTATTCTGTCGCTCCTC 60.868 57.143 0.00 0.00 44.66 3.71
2309 11159 0.665835 AGCTATTCTGTCGCTCCTCG 59.334 55.000 0.00 0.00 40.15 4.63
2310 11160 0.382515 GCTATTCTGTCGCTCCTCGT 59.617 55.000 0.00 0.00 39.67 4.18
2311 11161 1.202313 GCTATTCTGTCGCTCCTCGTT 60.202 52.381 0.00 0.00 39.67 3.85
2312 11162 2.735762 GCTATTCTGTCGCTCCTCGTTT 60.736 50.000 0.00 0.00 39.67 3.60
2313 11163 1.997669 ATTCTGTCGCTCCTCGTTTC 58.002 50.000 0.00 0.00 39.67 2.78
2314 11164 0.038526 TTCTGTCGCTCCTCGTTTCC 60.039 55.000 0.00 0.00 39.67 3.13
2315 11165 1.176619 TCTGTCGCTCCTCGTTTCCA 61.177 55.000 0.00 0.00 39.67 3.53
2316 11166 0.734253 CTGTCGCTCCTCGTTTCCAG 60.734 60.000 0.00 0.00 39.67 3.86
2317 11167 2.095252 GTCGCTCCTCGTTTCCAGC 61.095 63.158 0.00 0.00 39.67 4.85
2318 11168 2.048222 CGCTCCTCGTTTCCAGCA 60.048 61.111 0.00 0.00 0.00 4.41
2319 11169 2.383527 CGCTCCTCGTTTCCAGCAC 61.384 63.158 0.00 0.00 0.00 4.40
2320 11170 2.035442 GCTCCTCGTTTCCAGCACC 61.035 63.158 0.00 0.00 0.00 5.01
2321 11171 1.738099 CTCCTCGTTTCCAGCACCG 60.738 63.158 0.00 0.00 0.00 4.94
2322 11172 2.154798 CTCCTCGTTTCCAGCACCGA 62.155 60.000 0.00 0.00 0.00 4.69
2323 11173 1.738099 CCTCGTTTCCAGCACCGAG 60.738 63.158 0.00 0.00 44.72 4.63
2324 11174 2.357034 TCGTTTCCAGCACCGAGC 60.357 61.111 0.00 0.00 46.19 5.03
2347 11197 4.459089 GGAGCTGCGGGAGTGGTC 62.459 72.222 0.00 0.00 34.22 4.02
2348 11198 4.459089 GAGCTGCGGGAGTGGTCC 62.459 72.222 0.00 0.00 43.05 4.46
2354 11204 4.078516 CGGGAGTGGTCCGTTCCC 62.079 72.222 17.06 17.06 45.05 3.97
2355 11205 4.078516 GGGAGTGGTCCGTTCCCG 62.079 72.222 13.27 0.00 45.05 5.14
2356 11206 2.993264 GGAGTGGTCCGTTCCCGA 60.993 66.667 0.84 0.00 35.63 5.14
2357 11207 2.576832 GGAGTGGTCCGTTCCCGAA 61.577 63.158 0.84 0.00 35.63 4.30
2358 11208 1.373873 GAGTGGTCCGTTCCCGAAC 60.374 63.158 0.00 0.00 37.92 3.95
2422 12752 1.081509 CATGTTTGACAACGCCCCG 60.082 57.895 0.00 0.00 35.40 5.73
2423 12753 1.228003 ATGTTTGACAACGCCCCGA 60.228 52.632 0.00 0.00 35.40 5.14
2480 12810 1.344226 CGAGCTGAATTCGTGACGCA 61.344 55.000 0.00 0.00 33.57 5.24
2481 12811 1.002366 GAGCTGAATTCGTGACGCAT 58.998 50.000 0.00 0.00 0.00 4.73
2482 12812 1.394917 GAGCTGAATTCGTGACGCATT 59.605 47.619 1.92 1.92 0.00 3.56
2483 12813 1.806542 AGCTGAATTCGTGACGCATTT 59.193 42.857 4.14 0.00 0.00 2.32
2485 12815 1.906966 CTGAATTCGTGACGCATTTGC 59.093 47.619 4.14 0.00 37.78 3.68
2491 12828 0.722469 CGTGACGCATTTGCAGTGTC 60.722 55.000 10.33 10.33 44.53 3.67
2521 12858 6.405176 CCTGAAGGTAGGCATTTGAGAATTTC 60.405 42.308 0.00 0.00 0.00 2.17
2529 12866 5.067023 AGGCATTTGAGAATTTCGAGGATTC 59.933 40.000 12.96 12.96 34.48 2.52
2530 12867 5.163622 GGCATTTGAGAATTTCGAGGATTCA 60.164 40.000 19.46 5.77 36.26 2.57
2531 12868 5.970023 GCATTTGAGAATTTCGAGGATTCAG 59.030 40.000 19.46 8.10 36.26 3.02
2532 12869 5.551760 TTTGAGAATTTCGAGGATTCAGC 57.448 39.130 19.46 13.58 36.26 4.26
2533 12870 4.206477 TGAGAATTTCGAGGATTCAGCA 57.794 40.909 19.46 15.23 36.26 4.41
2539 12876 2.226896 CGAGGATTCAGCAGACGCG 61.227 63.158 3.53 3.53 45.49 6.01
2578 12915 1.513158 CCACTCTGCCACGTCCTAG 59.487 63.158 0.00 0.00 0.00 3.02
2597 12934 9.448294 CGTCCTAGTAAAGTTTTAGCATACTAG 57.552 37.037 11.58 11.58 42.63 2.57
2627 12964 4.339814 TCGATAGGCTTTCTCTTTCTCCTC 59.660 45.833 0.00 0.00 0.00 3.71
2647 12984 2.447429 TCGATTATCACTCTCTCCCCCT 59.553 50.000 0.00 0.00 0.00 4.79
2652 12989 1.614824 CACTCTCTCCCCCTGGCTT 60.615 63.158 0.00 0.00 0.00 4.35
2705 13042 1.462238 ACACCCTCTCAACCAGGCT 60.462 57.895 0.00 0.00 0.00 4.58
2713 13050 0.622665 CTCAACCAGGCTCCTCCATT 59.377 55.000 0.00 0.00 37.29 3.16
2715 13052 1.000396 AACCAGGCTCCTCCATTGC 60.000 57.895 0.00 0.00 37.29 3.56
2716 13053 1.504275 AACCAGGCTCCTCCATTGCT 61.504 55.000 0.00 0.00 37.29 3.91
2717 13054 1.153005 CCAGGCTCCTCCATTGCTC 60.153 63.158 0.00 0.00 37.29 4.26
2718 13055 1.153005 CAGGCTCCTCCATTGCTCC 60.153 63.158 0.00 0.00 37.29 4.70
2719 13056 1.617536 AGGCTCCTCCATTGCTCCA 60.618 57.895 0.00 0.00 37.29 3.86
2720 13057 0.992431 AGGCTCCTCCATTGCTCCAT 60.992 55.000 0.00 0.00 37.29 3.41
2730 13067 1.938577 CATTGCTCCATCTCCAACTCG 59.061 52.381 0.00 0.00 0.00 4.18
2747 13084 3.257393 ACTCGCACTTGATCTCATTGAC 58.743 45.455 0.00 0.00 0.00 3.18
2817 13162 2.739943 TGAGTCTGAGGTAGTCCATGG 58.260 52.381 4.97 4.97 35.89 3.66
2819 13164 3.100671 GAGTCTGAGGTAGTCCATGGTT 58.899 50.000 12.58 4.13 35.89 3.67
2820 13165 4.264217 TGAGTCTGAGGTAGTCCATGGTTA 60.264 45.833 12.58 3.07 35.89 2.85
2821 13166 4.282496 AGTCTGAGGTAGTCCATGGTTAG 58.718 47.826 12.58 0.00 35.89 2.34
2823 13168 5.044328 AGTCTGAGGTAGTCCATGGTTAGTA 60.044 44.000 12.58 0.00 35.89 1.82
2824 13169 5.299782 GTCTGAGGTAGTCCATGGTTAGTAG 59.700 48.000 12.58 2.09 35.89 2.57
2826 13171 4.216708 GAGGTAGTCCATGGTTAGTAGCT 58.783 47.826 16.13 16.13 33.26 3.32
2829 13174 4.650131 GGTAGTCCATGGTTAGTAGCTCTT 59.350 45.833 12.58 0.00 0.00 2.85
2830 13175 4.744795 AGTCCATGGTTAGTAGCTCTTG 57.255 45.455 12.58 0.00 0.00 3.02
2831 13176 3.452627 AGTCCATGGTTAGTAGCTCTTGG 59.547 47.826 12.58 0.00 0.00 3.61
2841 13186 3.882025 GCTCTTGGCGTTGGAGAG 58.118 61.111 0.00 0.00 39.86 3.20
2842 13187 1.004440 GCTCTTGGCGTTGGAGAGT 60.004 57.895 0.00 0.00 39.24 3.24
2844 13189 1.433534 CTCTTGGCGTTGGAGAGTTC 58.566 55.000 0.00 0.00 33.81 3.01
2845 13190 0.756294 TCTTGGCGTTGGAGAGTTCA 59.244 50.000 0.00 0.00 0.00 3.18
2847 13192 1.532868 CTTGGCGTTGGAGAGTTCAAG 59.467 52.381 0.00 0.00 0.00 3.02
2848 13193 0.250295 TGGCGTTGGAGAGTTCAAGG 60.250 55.000 0.00 0.00 34.35 3.61
2849 13194 1.869690 GCGTTGGAGAGTTCAAGGC 59.130 57.895 5.89 5.89 44.68 4.35
2850 13195 0.603975 GCGTTGGAGAGTTCAAGGCT 60.604 55.000 12.33 0.00 46.25 4.58
2851 13196 1.337823 GCGTTGGAGAGTTCAAGGCTA 60.338 52.381 12.33 0.00 46.25 3.93
2852 13197 2.678190 GCGTTGGAGAGTTCAAGGCTAT 60.678 50.000 12.33 0.00 46.25 2.97
2853 13198 3.190874 CGTTGGAGAGTTCAAGGCTATC 58.809 50.000 0.00 0.00 0.00 2.08
2854 13199 3.536570 GTTGGAGAGTTCAAGGCTATCC 58.463 50.000 0.00 0.00 42.82 2.59
2856 13201 2.501723 TGGAGAGTTCAAGGCTATCCAC 59.498 50.000 4.76 0.00 45.88 4.02
2859 13204 2.166664 AGAGTTCAAGGCTATCCACGTC 59.833 50.000 0.00 0.00 33.74 4.34
2860 13205 1.207329 AGTTCAAGGCTATCCACGTCC 59.793 52.381 0.00 0.00 33.74 4.79
2861 13206 1.066430 GTTCAAGGCTATCCACGTCCA 60.066 52.381 0.00 0.00 33.74 4.02
2862 13207 1.271856 TCAAGGCTATCCACGTCCAA 58.728 50.000 0.00 0.00 33.74 3.53
2864 13209 1.207089 CAAGGCTATCCACGTCCAAGA 59.793 52.381 0.00 0.00 33.74 3.02
2865 13210 1.115467 AGGCTATCCACGTCCAAGAG 58.885 55.000 0.00 0.00 33.74 2.85
2866 13211 0.105039 GGCTATCCACGTCCAAGAGG 59.895 60.000 0.00 0.00 0.00 3.69
2867 13212 0.824759 GCTATCCACGTCCAAGAGGT 59.175 55.000 0.00 0.00 35.89 3.85
2868 13213 1.471676 GCTATCCACGTCCAAGAGGTG 60.472 57.143 9.81 9.81 44.71 4.00
2880 13225 3.338249 CCAAGAGGTGATGTTGGTAGTG 58.662 50.000 0.00 0.00 45.29 2.74
2881 13226 2.744202 CAAGAGGTGATGTTGGTAGTGC 59.256 50.000 0.00 0.00 0.00 4.40
2884 13229 1.066858 AGGTGATGTTGGTAGTGCGAG 60.067 52.381 0.00 0.00 0.00 5.03
2886 13231 1.726791 GTGATGTTGGTAGTGCGAGTG 59.273 52.381 0.00 0.00 0.00 3.51
2887 13232 0.721718 GATGTTGGTAGTGCGAGTGC 59.278 55.000 0.00 0.00 43.20 4.40
2921 13266 4.704103 AGAGCAGGCCCTCGTCCA 62.704 66.667 0.00 0.00 36.95 4.02
2922 13267 3.474570 GAGCAGGCCCTCGTCCAT 61.475 66.667 0.00 0.00 0.00 3.41
2924 13269 4.864334 GCAGGCCCTCGTCCATGG 62.864 72.222 4.97 4.97 0.00 3.66
2925 13270 3.402681 CAGGCCCTCGTCCATGGT 61.403 66.667 12.58 0.00 0.00 3.55
2926 13271 3.083997 AGGCCCTCGTCCATGGTC 61.084 66.667 12.58 5.07 0.00 4.02
2927 13272 3.399181 GGCCCTCGTCCATGGTCA 61.399 66.667 12.58 0.00 0.00 4.02
2928 13273 2.125106 GCCCTCGTCCATGGTCAC 60.125 66.667 12.58 2.13 0.00 3.67
2930 13275 2.290287 CCCTCGTCCATGGTCACCA 61.290 63.158 12.58 0.00 38.19 4.17
2931 13276 1.079127 CCTCGTCCATGGTCACCAC 60.079 63.158 12.58 0.47 35.80 4.16
2941 13286 2.183409 GGTCACCACCATGATGTGC 58.817 57.895 0.00 0.00 43.17 4.57
2943 13288 1.538047 GTCACCACCATGATGTGCTT 58.462 50.000 0.00 0.00 34.85 3.91
2944 13289 1.470098 GTCACCACCATGATGTGCTTC 59.530 52.381 0.00 0.00 34.85 3.86
2945 13290 1.073603 TCACCACCATGATGTGCTTCA 59.926 47.619 0.00 0.00 34.85 3.02
2947 13292 0.813184 CCACCATGATGTGCTTCACC 59.187 55.000 0.00 0.00 34.85 4.02
2949 13294 2.097036 CACCATGATGTGCTTCACCAT 58.903 47.619 0.00 0.00 32.73 3.55
2950 13295 2.097036 ACCATGATGTGCTTCACCATG 58.903 47.619 9.00 9.00 35.41 3.66
2951 13296 2.097036 CCATGATGTGCTTCACCATGT 58.903 47.619 13.09 0.00 34.54 3.21
2952 13297 2.159296 CCATGATGTGCTTCACCATGTG 60.159 50.000 13.09 4.51 34.54 3.21
2953 13298 0.883153 TGATGTGCTTCACCATGTGC 59.117 50.000 0.00 0.00 32.73 4.57
2955 13300 0.606130 ATGTGCTTCACCATGTGCGA 60.606 50.000 0.00 0.00 32.73 5.10
2956 13301 1.229975 TGTGCTTCACCATGTGCGAG 61.230 55.000 0.00 0.00 32.73 5.03
2958 13303 0.036105 TGCTTCACCATGTGCGAGAT 60.036 50.000 0.00 0.00 32.98 2.75
2959 13304 0.376152 GCTTCACCATGTGCGAGATG 59.624 55.000 0.00 0.00 32.98 2.90
2960 13305 1.730501 CTTCACCATGTGCGAGATGT 58.269 50.000 0.00 0.00 32.98 3.06
2961 13306 2.079158 CTTCACCATGTGCGAGATGTT 58.921 47.619 0.00 0.00 32.98 2.71
2962 13307 1.441738 TCACCATGTGCGAGATGTTG 58.558 50.000 0.00 0.00 32.98 3.33
2965 13310 0.376152 CCATGTGCGAGATGTTGAGC 59.624 55.000 0.00 0.00 0.00 4.26
2966 13311 0.376152 CATGTGCGAGATGTTGAGCC 59.624 55.000 0.00 0.00 0.00 4.70
2967 13312 0.251354 ATGTGCGAGATGTTGAGCCT 59.749 50.000 0.00 0.00 0.00 4.58
2968 13313 0.671472 TGTGCGAGATGTTGAGCCTG 60.671 55.000 0.00 0.00 0.00 4.85
2969 13314 0.390340 GTGCGAGATGTTGAGCCTGA 60.390 55.000 0.00 0.00 0.00 3.86
2970 13315 0.390340 TGCGAGATGTTGAGCCTGAC 60.390 55.000 0.00 0.00 0.00 3.51
2971 13316 1.416813 GCGAGATGTTGAGCCTGACG 61.417 60.000 0.00 0.00 0.00 4.35
2972 13317 1.416813 CGAGATGTTGAGCCTGACGC 61.417 60.000 0.00 0.00 37.98 5.19
2973 13318 1.416813 GAGATGTTGAGCCTGACGCG 61.417 60.000 3.53 3.53 44.76 6.01
2974 13319 2.434884 ATGTTGAGCCTGACGCGG 60.435 61.111 12.47 0.00 44.76 6.46
2975 13320 3.958147 ATGTTGAGCCTGACGCGGG 62.958 63.158 12.47 2.62 44.76 6.13
2977 13322 4.069232 TTGAGCCTGACGCGGGAG 62.069 66.667 12.47 5.22 44.76 4.30
2989 13334 2.802106 CGGGAGCTCTCGAGGAAC 59.198 66.667 32.33 1.41 0.00 3.62
2991 13336 1.595993 CGGGAGCTCTCGAGGAACAA 61.596 60.000 32.33 0.00 0.00 2.83
2992 13337 0.174617 GGGAGCTCTCGAGGAACAAG 59.825 60.000 14.64 2.92 0.00 3.16
2993 13338 1.178276 GGAGCTCTCGAGGAACAAGA 58.822 55.000 14.64 0.00 0.00 3.02
2994 13339 1.135228 GGAGCTCTCGAGGAACAAGAC 60.135 57.143 14.64 0.57 0.00 3.01
2995 13340 1.542030 GAGCTCTCGAGGAACAAGACA 59.458 52.381 13.56 0.00 0.00 3.41
2996 13341 1.964223 AGCTCTCGAGGAACAAGACAA 59.036 47.619 13.56 0.00 0.00 3.18
2997 13342 2.029470 AGCTCTCGAGGAACAAGACAAG 60.029 50.000 13.56 0.00 0.00 3.16
2998 13343 2.333014 CTCTCGAGGAACAAGACAAGC 58.667 52.381 13.56 0.00 0.00 4.01
2999 13344 1.686587 TCTCGAGGAACAAGACAAGCA 59.313 47.619 13.56 0.00 0.00 3.91
3000 13345 2.102420 TCTCGAGGAACAAGACAAGCAA 59.898 45.455 13.56 0.00 0.00 3.91
3002 13347 1.070577 CGAGGAACAAGACAAGCAACG 60.071 52.381 0.00 0.00 0.00 4.10
3003 13348 2.210116 GAGGAACAAGACAAGCAACGA 58.790 47.619 0.00 0.00 0.00 3.85
3004 13349 1.940613 AGGAACAAGACAAGCAACGAC 59.059 47.619 0.00 0.00 0.00 4.34
3005 13350 1.002792 GGAACAAGACAAGCAACGACC 60.003 52.381 0.00 0.00 0.00 4.79
3006 13351 1.002792 GAACAAGACAAGCAACGACCC 60.003 52.381 0.00 0.00 0.00 4.46
3007 13352 0.180406 ACAAGACAAGCAACGACCCT 59.820 50.000 0.00 0.00 0.00 4.34
3008 13353 1.414919 ACAAGACAAGCAACGACCCTA 59.585 47.619 0.00 0.00 0.00 3.53
3010 13355 2.165319 AGACAAGCAACGACCCTAAC 57.835 50.000 0.00 0.00 0.00 2.34
3011 13356 1.414919 AGACAAGCAACGACCCTAACA 59.585 47.619 0.00 0.00 0.00 2.41
3012 13357 1.529865 GACAAGCAACGACCCTAACAC 59.470 52.381 0.00 0.00 0.00 3.32
3013 13358 1.134340 ACAAGCAACGACCCTAACACA 60.134 47.619 0.00 0.00 0.00 3.72
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.553602 TGTGCTGCCAAGTCAAGTAATG 59.446 45.455 0.00 0.00 0.00 1.90
1 2 2.862541 TGTGCTGCCAAGTCAAGTAAT 58.137 42.857 0.00 0.00 0.00 1.89
2 3 2.340210 TGTGCTGCCAAGTCAAGTAA 57.660 45.000 0.00 0.00 0.00 2.24
3 4 1.946768 GTTGTGCTGCCAAGTCAAGTA 59.053 47.619 0.00 0.00 0.00 2.24
4 5 0.740737 GTTGTGCTGCCAAGTCAAGT 59.259 50.000 0.00 0.00 0.00 3.16
47 7062 3.626028 AGCCGACTCACACAAATTTTC 57.374 42.857 0.00 0.00 0.00 2.29
85 7100 1.065358 CATCTTCGTTGTACCGCGTT 58.935 50.000 4.92 0.00 0.00 4.84
87 7102 1.343821 GCATCTTCGTTGTACCGCG 59.656 57.895 0.00 0.00 0.00 6.46
88 7103 1.702491 GGGCATCTTCGTTGTACCGC 61.702 60.000 0.00 0.00 0.00 5.68
89 7104 0.390603 TGGGCATCTTCGTTGTACCG 60.391 55.000 0.00 0.00 0.00 4.02
90 7105 1.084289 GTGGGCATCTTCGTTGTACC 58.916 55.000 0.00 0.00 0.00 3.34
121 7137 2.095415 TCCCGTCGACTATGAATATGCG 60.095 50.000 14.70 0.00 0.00 4.73
125 7141 7.610692 AGAAGATATTCCCGTCGACTATGAATA 59.389 37.037 22.35 22.35 33.75 1.75
130 7146 4.701171 GGAGAAGATATTCCCGTCGACTAT 59.299 45.833 14.70 3.92 0.00 2.12
144 7160 3.830178 TGTTCGTTCACTGGGAGAAGATA 59.170 43.478 0.00 0.00 0.00 1.98
225 7241 4.559704 CGTAGCTCAGATGGTTAGATTCCC 60.560 50.000 0.00 0.00 0.00 3.97
289 7314 7.917597 TGTTACTGATAACTGTTGCGTTTAAA 58.082 30.769 2.69 0.00 41.24 1.52
356 7381 6.024552 TGTTGTTGCTTTTGTTCTTCTTCT 57.975 33.333 0.00 0.00 0.00 2.85
460 7486 7.009357 GTCTTTATCAAGTTAGTCTGCTTACCG 59.991 40.741 0.00 0.00 0.00 4.02
486 7512 6.982141 TGGTGTCTAATAAGTAAGCATAACCG 59.018 38.462 0.00 0.00 0.00 4.44
536 7563 1.210478 CCTATAAGGCCATCCATCGGG 59.790 57.143 5.01 0.00 33.74 5.14
575 7602 3.325425 TGACCCCTTGATTACTTCGTTGA 59.675 43.478 0.00 0.00 0.00 3.18
589 7616 5.454966 ACTTTGTAGATGTTTTGACCCCTT 58.545 37.500 0.00 0.00 0.00 3.95
598 7628 7.156673 TCGCTAGGTTTACTTTGTAGATGTTT 58.843 34.615 0.00 0.00 0.00 2.83
601 7631 7.042658 GGAATCGCTAGGTTTACTTTGTAGATG 60.043 40.741 0.00 0.00 0.00 2.90
690 7761 3.730963 CGCAAGACTACTAATGCAGTCGA 60.731 47.826 0.00 0.00 44.77 4.20
691 7762 2.531912 CGCAAGACTACTAATGCAGTCG 59.468 50.000 0.00 0.00 44.77 4.18
692 7763 3.770666 TCGCAAGACTACTAATGCAGTC 58.229 45.455 0.00 0.00 45.01 3.51
693 7764 3.193691 ACTCGCAAGACTACTAATGCAGT 59.806 43.478 0.00 0.00 45.01 4.40
696 7767 3.512680 ACACTCGCAAGACTACTAATGC 58.487 45.455 0.00 0.00 45.01 3.56
697 7768 5.512082 GTGTACACTCGCAAGACTACTAATG 59.488 44.000 18.92 0.00 45.01 1.90
699 7770 4.758674 AGTGTACACTCGCAAGACTACTAA 59.241 41.667 22.95 0.00 45.01 2.24
701 7772 3.147629 AGTGTACACTCGCAAGACTACT 58.852 45.455 22.95 0.00 45.01 2.57
702 7773 3.490399 GAGTGTACACTCGCAAGACTAC 58.510 50.000 33.82 13.14 46.93 2.73
703 7774 3.826236 GAGTGTACACTCGCAAGACTA 57.174 47.619 33.82 0.00 46.93 2.59
714 7785 8.665685 CATAAAAATTACTCCAGGAGTGTACAC 58.334 37.037 29.93 18.56 43.30 2.90
715 7786 8.380099 ACATAAAAATTACTCCAGGAGTGTACA 58.620 33.333 29.93 9.05 43.30 2.90
716 7787 8.788325 ACATAAAAATTACTCCAGGAGTGTAC 57.212 34.615 29.93 0.00 43.30 2.90
718 7789 7.690256 AGACATAAAAATTACTCCAGGAGTGT 58.310 34.615 29.93 16.45 43.30 3.55
720 7791 7.824779 GTGAGACATAAAAATTACTCCAGGAGT 59.175 37.037 25.92 25.92 45.54 3.85
722 7793 7.685481 TGTGAGACATAAAAATTACTCCAGGA 58.315 34.615 0.00 0.00 0.00 3.86
723 7794 7.921786 TGTGAGACATAAAAATTACTCCAGG 57.078 36.000 0.00 0.00 0.00 4.45
738 7809 8.922237 AGTCAATAGATTCACTATGTGAGACAT 58.078 33.333 12.83 0.00 43.69 3.06
739 7810 8.298729 AGTCAATAGATTCACTATGTGAGACA 57.701 34.615 12.83 0.00 43.69 3.41
740 7811 9.243637 GAAGTCAATAGATTCACTATGTGAGAC 57.756 37.037 0.66 3.90 43.69 3.36
742 7813 8.420222 AGGAAGTCAATAGATTCACTATGTGAG 58.580 37.037 0.66 0.00 43.69 3.51
743 7814 8.311395 AGGAAGTCAATAGATTCACTATGTGA 57.689 34.615 0.00 0.00 41.10 3.58
802 7897 1.133915 GTTGGGTTGGAGTCCTTGACA 60.134 52.381 11.33 1.95 34.60 3.58
809 7904 1.404035 GTGTTGTGTTGGGTTGGAGTC 59.596 52.381 0.00 0.00 0.00 3.36
814 7909 0.805614 TCGTGTGTTGTGTTGGGTTG 59.194 50.000 0.00 0.00 0.00 3.77
817 7912 1.374560 TTCTCGTGTGTTGTGTTGGG 58.625 50.000 0.00 0.00 0.00 4.12
818 7913 2.354510 ACATTCTCGTGTGTTGTGTTGG 59.645 45.455 0.00 0.00 0.00 3.77
819 7914 3.063316 TGACATTCTCGTGTGTTGTGTTG 59.937 43.478 0.00 0.00 31.16 3.33
826 7921 3.804036 TCCTTTTGACATTCTCGTGTGT 58.196 40.909 0.00 0.00 31.16 3.72
913 8012 0.105453 ATCACCGGCAGTCCCTCTAT 60.105 55.000 0.00 0.00 0.00 1.98
921 8020 2.501128 CGATCCATCACCGGCAGT 59.499 61.111 0.00 0.00 0.00 4.40
937 8036 2.032528 TTGGCTTGGCTCTGTCCG 59.967 61.111 0.00 0.00 0.00 4.79
951 8050 1.534729 GTACTCTGGTTTGGGCTTGG 58.465 55.000 0.00 0.00 0.00 3.61
965 8064 2.004733 GCGGTGTTTGGTATGGTACTC 58.995 52.381 0.00 0.00 0.00 2.59
970 8069 1.641123 GACGGCGGTGTTTGGTATGG 61.641 60.000 13.24 0.00 0.00 2.74
973 8072 1.800283 TACGACGGCGGTGTTTGGTA 61.800 55.000 18.49 0.00 43.17 3.25
976 8075 2.377310 CCTACGACGGCGGTGTTTG 61.377 63.158 18.49 5.77 43.17 2.93
977 8076 2.048877 CCTACGACGGCGGTGTTT 60.049 61.111 18.49 0.00 43.17 2.83
978 8077 2.859981 AACCTACGACGGCGGTGTT 61.860 57.895 18.49 12.57 43.17 3.32
981 8080 4.729856 GCAACCTACGACGGCGGT 62.730 66.667 18.49 0.00 43.17 5.68
984 8083 2.125269 ATGGCAACCTACGACGGC 60.125 61.111 0.00 0.00 0.00 5.68
985 8084 1.813753 CCATGGCAACCTACGACGG 60.814 63.158 0.00 0.00 0.00 4.79
986 8085 1.082117 GTCCATGGCAACCTACGACG 61.082 60.000 6.96 0.00 0.00 5.12
987 8086 0.036765 TGTCCATGGCAACCTACGAC 60.037 55.000 6.96 0.00 0.00 4.34
988 8087 0.036765 GTGTCCATGGCAACCTACGA 60.037 55.000 6.96 0.00 0.00 3.43
989 8088 1.024579 GGTGTCCATGGCAACCTACG 61.025 60.000 22.15 0.00 0.00 3.51
990 8089 0.328258 AGGTGTCCATGGCAACCTAC 59.672 55.000 27.77 12.95 0.00 3.18
991 8090 1.004277 GAAGGTGTCCATGGCAACCTA 59.996 52.381 28.61 1.73 0.00 3.08
1488 10299 4.008933 GAGAGCTGGCACACCGGT 62.009 66.667 0.00 0.00 45.10 5.28
1515 10326 1.681327 GTAGGTGCCGTCCCTCTCA 60.681 63.158 0.00 0.00 33.35 3.27
1729 10540 2.663826 ATCAAGTTCGTCAGAGGCTC 57.336 50.000 6.34 6.34 0.00 4.70
1730 10541 2.613977 CCAATCAAGTTCGTCAGAGGCT 60.614 50.000 0.00 0.00 0.00 4.58
1732 10543 3.319137 TCCAATCAAGTTCGTCAGAGG 57.681 47.619 0.00 0.00 0.00 3.69
1733 10544 5.869753 ATTTCCAATCAAGTTCGTCAGAG 57.130 39.130 0.00 0.00 0.00 3.35
1734 10545 5.107104 CGAATTTCCAATCAAGTTCGTCAGA 60.107 40.000 3.48 0.00 39.40 3.27
1735 10546 5.082059 CGAATTTCCAATCAAGTTCGTCAG 58.918 41.667 3.48 0.00 39.40 3.51
1984 10808 1.127951 CGTGGTGAAACGGTATGAAGC 59.872 52.381 0.00 0.00 39.89 3.86
2052 10879 3.884037 AAAGGTTCAGTTCCTCATGGT 57.116 42.857 0.00 0.00 33.76 3.55
2124 10974 7.116948 CAGAGTCGTGAGAACATAGACATTTTT 59.883 37.037 0.00 0.00 45.01 1.94
2136 10986 1.069159 TCGAAGCAGAGTCGTGAGAAC 60.069 52.381 0.00 0.00 45.01 3.01
2150 11000 4.489679 ACAAATCCTCAAGTTTCGAAGC 57.510 40.909 3.49 3.49 0.00 3.86
2151 11001 6.787085 ACTACAAATCCTCAAGTTTCGAAG 57.213 37.500 0.00 0.00 0.00 3.79
2154 11004 6.539649 TCAACTACAAATCCTCAAGTTTCG 57.460 37.500 0.00 0.00 0.00 3.46
2201 11051 0.108472 GTTCCCGAACGGACCCTAAG 60.108 60.000 15.07 0.00 41.83 2.18
2202 11052 0.831288 TGTTCCCGAACGGACCCTAA 60.831 55.000 15.07 0.00 41.83 2.69
2203 11053 1.228831 TGTTCCCGAACGGACCCTA 60.229 57.895 15.07 0.00 41.83 3.53
2204 11054 2.524887 TGTTCCCGAACGGACCCT 60.525 61.111 15.07 0.00 41.83 4.34
2205 11055 2.357881 GTGTTCCCGAACGGACCC 60.358 66.667 15.07 2.41 41.83 4.46
2206 11056 1.373873 GAGTGTTCCCGAACGGACC 60.374 63.158 15.07 2.75 41.83 4.46
2207 11057 1.373873 GGAGTGTTCCCGAACGGAC 60.374 63.158 15.07 6.49 41.83 4.79
2208 11058 3.053828 GGAGTGTTCCCGAACGGA 58.946 61.111 15.07 0.00 43.94 4.69
2214 11064 4.452733 GGAGCCGGAGTGTTCCCG 62.453 72.222 5.05 0.00 46.10 5.14
2215 11065 4.097361 GGGAGCCGGAGTGTTCCC 62.097 72.222 5.05 9.20 42.30 3.97
2216 11066 2.890766 TTGGGAGCCGGAGTGTTCC 61.891 63.158 5.05 3.02 40.33 3.62
2217 11067 1.671379 GTTGGGAGCCGGAGTGTTC 60.671 63.158 5.05 0.00 0.00 3.18
2218 11068 2.113243 GAGTTGGGAGCCGGAGTGTT 62.113 60.000 5.05 0.00 0.00 3.32
2219 11069 2.526873 AGTTGGGAGCCGGAGTGT 60.527 61.111 5.05 0.00 0.00 3.55
2220 11070 2.266055 GAGTTGGGAGCCGGAGTG 59.734 66.667 5.05 0.00 0.00 3.51
2221 11071 3.003763 GGAGTTGGGAGCCGGAGT 61.004 66.667 5.05 0.00 0.00 3.85
2222 11072 4.148825 CGGAGTTGGGAGCCGGAG 62.149 72.222 5.05 0.00 41.29 4.63
2226 11076 3.316573 CTCCACGGAGTTGGGAGCC 62.317 68.421 4.83 0.00 42.46 4.70
2227 11077 2.266055 CTCCACGGAGTTGGGAGC 59.734 66.667 4.83 0.00 42.46 4.70
2229 11079 2.203788 AGCTCCACGGAGTTGGGA 60.204 61.111 14.48 0.00 41.61 4.37
2230 11080 2.046892 CAGCTCCACGGAGTTGGG 60.047 66.667 19.19 0.00 45.56 4.12
2233 11083 1.611673 CCATTTCAGCTCCACGGAGTT 60.612 52.381 14.48 5.76 41.61 3.01
2235 11085 0.036010 ACCATTTCAGCTCCACGGAG 60.036 55.000 8.84 8.84 44.56 4.63
2236 11086 0.321564 CACCATTTCAGCTCCACGGA 60.322 55.000 0.00 0.00 0.00 4.69
2237 11087 1.308069 CCACCATTTCAGCTCCACGG 61.308 60.000 0.00 0.00 0.00 4.94
2238 11088 0.321564 TCCACCATTTCAGCTCCACG 60.322 55.000 0.00 0.00 0.00 4.94
2239 11089 1.457346 CTCCACCATTTCAGCTCCAC 58.543 55.000 0.00 0.00 0.00 4.02
2240 11090 0.322816 GCTCCACCATTTCAGCTCCA 60.323 55.000 0.00 0.00 0.00 3.86
2241 11091 1.372087 CGCTCCACCATTTCAGCTCC 61.372 60.000 0.00 0.00 0.00 4.70
2242 11092 1.372087 CCGCTCCACCATTTCAGCTC 61.372 60.000 0.00 0.00 0.00 4.09
2243 11093 1.377725 CCGCTCCACCATTTCAGCT 60.378 57.895 0.00 0.00 0.00 4.24
2244 11094 1.372087 CTCCGCTCCACCATTTCAGC 61.372 60.000 0.00 0.00 0.00 4.26
2245 11095 1.372087 GCTCCGCTCCACCATTTCAG 61.372 60.000 0.00 0.00 0.00 3.02
2246 11096 1.377202 GCTCCGCTCCACCATTTCA 60.377 57.895 0.00 0.00 0.00 2.69
2247 11097 2.464459 CGCTCCGCTCCACCATTTC 61.464 63.158 0.00 0.00 0.00 2.17
2248 11098 2.436646 CGCTCCGCTCCACCATTT 60.437 61.111 0.00 0.00 0.00 2.32
2249 11099 4.473520 CCGCTCCGCTCCACCATT 62.474 66.667 0.00 0.00 0.00 3.16
2264 11114 0.246834 CAAAAATGAATTGCGCGCCG 60.247 50.000 30.77 0.00 0.00 6.46
2265 11115 0.789601 ACAAAAATGAATTGCGCGCC 59.210 45.000 30.77 13.91 0.00 6.53
2266 11116 1.462214 CCACAAAAATGAATTGCGCGC 60.462 47.619 27.26 27.26 0.00 6.86
2267 11117 2.057316 TCCACAAAAATGAATTGCGCG 58.943 42.857 0.00 0.00 0.00 6.86
2268 11118 2.159801 GCTCCACAAAAATGAATTGCGC 60.160 45.455 0.00 0.00 0.00 6.09
2269 11119 3.058450 TGCTCCACAAAAATGAATTGCG 58.942 40.909 0.00 0.00 0.00 4.85
2270 11120 3.120442 GCTGCTCCACAAAAATGAATTGC 60.120 43.478 0.00 0.00 0.00 3.56
2271 11121 4.312443 AGCTGCTCCACAAAAATGAATTG 58.688 39.130 0.00 0.00 0.00 2.32
2272 11122 4.612264 AGCTGCTCCACAAAAATGAATT 57.388 36.364 0.00 0.00 0.00 2.17
2273 11123 5.927281 ATAGCTGCTCCACAAAAATGAAT 57.073 34.783 4.91 0.00 0.00 2.57
2274 11124 5.477984 AGAATAGCTGCTCCACAAAAATGAA 59.522 36.000 4.91 0.00 0.00 2.57
2275 11125 5.012239 AGAATAGCTGCTCCACAAAAATGA 58.988 37.500 4.91 0.00 0.00 2.57
2276 11126 5.100259 CAGAATAGCTGCTCCACAAAAATG 58.900 41.667 4.91 0.00 37.90 2.32
2277 11127 5.320549 CAGAATAGCTGCTCCACAAAAAT 57.679 39.130 4.91 0.00 37.90 1.82
2278 11128 4.771590 CAGAATAGCTGCTCCACAAAAA 57.228 40.909 4.91 0.00 37.90 1.94
2289 11139 4.147204 ACGAGGAGCGACAGAATAGCTG 62.147 54.545 0.00 0.00 46.29 4.24
2290 11140 0.665835 CGAGGAGCGACAGAATAGCT 59.334 55.000 0.00 0.00 44.57 3.32
2291 11141 0.382515 ACGAGGAGCGACAGAATAGC 59.617 55.000 0.00 0.00 44.57 2.97
2292 11142 2.853731 AACGAGGAGCGACAGAATAG 57.146 50.000 0.00 0.00 44.57 1.73
2293 11143 2.159282 GGAAACGAGGAGCGACAGAATA 60.159 50.000 0.00 0.00 44.57 1.75
2294 11144 1.404315 GGAAACGAGGAGCGACAGAAT 60.404 52.381 0.00 0.00 44.57 2.40
2295 11145 0.038526 GGAAACGAGGAGCGACAGAA 60.039 55.000 0.00 0.00 44.57 3.02
2296 11146 1.176619 TGGAAACGAGGAGCGACAGA 61.177 55.000 0.00 0.00 44.57 3.41
2297 11147 0.734253 CTGGAAACGAGGAGCGACAG 60.734 60.000 0.00 0.00 44.57 3.51
2298 11148 1.289066 CTGGAAACGAGGAGCGACA 59.711 57.895 0.00 0.00 44.57 4.35
2299 11149 2.095252 GCTGGAAACGAGGAGCGAC 61.095 63.158 0.00 0.00 44.57 5.19
2300 11150 2.261671 GCTGGAAACGAGGAGCGA 59.738 61.111 0.00 0.00 44.57 4.93
2302 11152 2.035442 GGTGCTGGAAACGAGGAGC 61.035 63.158 0.00 0.00 0.00 4.70
2303 11153 1.738099 CGGTGCTGGAAACGAGGAG 60.738 63.158 0.00 0.00 0.00 3.69
2304 11154 2.154798 CTCGGTGCTGGAAACGAGGA 62.155 60.000 8.07 0.00 46.44 3.71
2305 11155 1.738099 CTCGGTGCTGGAAACGAGG 60.738 63.158 8.07 0.00 46.44 4.63
2306 11156 3.862124 CTCGGTGCTGGAAACGAG 58.138 61.111 1.38 1.38 45.34 4.18
2307 11157 2.357034 GCTCGGTGCTGGAAACGA 60.357 61.111 0.00 0.00 38.95 3.85
2308 11158 3.777925 CGCTCGGTGCTGGAAACG 61.778 66.667 0.23 0.00 40.11 3.60
2309 11159 3.423154 CCGCTCGGTGCTGGAAAC 61.423 66.667 0.00 0.00 40.11 2.78
2310 11160 3.589654 CTCCGCTCGGTGCTGGAAA 62.590 63.158 8.28 0.00 41.28 3.13
2311 11161 4.069232 CTCCGCTCGGTGCTGGAA 62.069 66.667 8.28 0.00 41.28 3.53
2330 11180 4.459089 GACCACTCCCGCAGCTCC 62.459 72.222 0.00 0.00 0.00 4.70
2331 11181 4.459089 GGACCACTCCCGCAGCTC 62.459 72.222 0.00 0.00 0.00 4.09
2353 11203 0.754472 TAATCTAAGGCCCCGTTCGG 59.246 55.000 0.00 4.08 0.00 4.30
2354 11204 2.833631 ATAATCTAAGGCCCCGTTCG 57.166 50.000 0.00 0.00 0.00 3.95
2355 11205 5.801380 TCATAATAATCTAAGGCCCCGTTC 58.199 41.667 0.00 0.00 0.00 3.95
2356 11206 5.836024 TCATAATAATCTAAGGCCCCGTT 57.164 39.130 0.00 0.00 0.00 4.44
2357 11207 7.182206 ACTTATCATAATAATCTAAGGCCCCGT 59.818 37.037 0.00 0.00 0.00 5.28
2358 11208 7.565680 ACTTATCATAATAATCTAAGGCCCCG 58.434 38.462 0.00 0.00 0.00 5.73
2359 11209 9.178758 CAACTTATCATAATAATCTAAGGCCCC 57.821 37.037 0.00 0.00 0.00 5.80
2360 11210 9.959721 TCAACTTATCATAATAATCTAAGGCCC 57.040 33.333 0.00 0.00 0.00 5.80
2432 12762 1.318158 CCAATTCAGCCTGGCTCCAC 61.318 60.000 20.49 0.00 36.40 4.02
2480 12810 4.441913 CCTTCAGGTTTTGACACTGCAAAT 60.442 41.667 0.00 0.00 37.57 2.32
2481 12811 3.119173 CCTTCAGGTTTTGACACTGCAAA 60.119 43.478 0.00 0.00 34.94 3.68
2482 12812 2.426738 CCTTCAGGTTTTGACACTGCAA 59.573 45.455 0.00 0.00 34.94 4.08
2483 12813 2.023673 CCTTCAGGTTTTGACACTGCA 58.976 47.619 0.00 0.00 34.94 4.41
2521 12858 2.226896 CGCGTCTGCTGAATCCTCG 61.227 63.158 0.00 0.00 39.65 4.63
2539 12876 0.616371 GGCAAATTTACCCCAACCCC 59.384 55.000 0.00 0.00 0.00 4.95
2597 12934 4.688021 AGAGAAAGCCTATCGACATGAAC 58.312 43.478 0.00 0.00 0.00 3.18
2601 12938 5.452636 GGAGAAAGAGAAAGCCTATCGACAT 60.453 44.000 0.00 0.00 0.00 3.06
2627 12964 2.560542 CAGGGGGAGAGAGTGATAATCG 59.439 54.545 0.00 0.00 0.00 3.34
2652 12989 2.106511 GCCTATGGCTTGGAGAATGGTA 59.893 50.000 0.73 0.00 46.69 3.25
2705 13042 1.135094 GGAGATGGAGCAATGGAGGA 58.865 55.000 0.00 0.00 0.00 3.71
2713 13050 1.219124 GCGAGTTGGAGATGGAGCA 59.781 57.895 0.00 0.00 0.00 4.26
2715 13052 0.534412 AGTGCGAGTTGGAGATGGAG 59.466 55.000 0.00 0.00 0.00 3.86
2716 13053 0.976641 AAGTGCGAGTTGGAGATGGA 59.023 50.000 0.00 0.00 0.00 3.41
2717 13054 1.081892 CAAGTGCGAGTTGGAGATGG 58.918 55.000 0.00 0.00 0.00 3.51
2718 13055 2.084610 TCAAGTGCGAGTTGGAGATG 57.915 50.000 0.00 0.00 0.00 2.90
2719 13056 2.499289 AGATCAAGTGCGAGTTGGAGAT 59.501 45.455 0.00 0.00 0.00 2.75
2720 13057 1.895798 AGATCAAGTGCGAGTTGGAGA 59.104 47.619 0.00 0.00 0.00 3.71
2730 13067 3.867493 TCATCGTCAATGAGATCAAGTGC 59.133 43.478 0.00 0.00 39.52 4.40
2747 13084 4.998788 TCAGAACCATGACTAGTTCATCG 58.001 43.478 13.00 0.00 43.68 3.84
2801 13146 4.332683 ACTAACCATGGACTACCTCAGA 57.667 45.455 21.47 0.00 37.04 3.27
2817 13162 2.000447 CCAACGCCAAGAGCTACTAAC 59.000 52.381 0.00 0.00 40.39 2.34
2819 13164 1.476891 CTCCAACGCCAAGAGCTACTA 59.523 52.381 0.00 0.00 40.39 1.82
2820 13165 0.247736 CTCCAACGCCAAGAGCTACT 59.752 55.000 0.00 0.00 40.39 2.57
2821 13166 0.246635 TCTCCAACGCCAAGAGCTAC 59.753 55.000 0.00 0.00 40.39 3.58
2823 13168 1.294780 CTCTCCAACGCCAAGAGCT 59.705 57.895 0.00 0.00 40.39 4.09
2824 13169 0.603975 AACTCTCCAACGCCAAGAGC 60.604 55.000 5.03 0.00 40.15 4.09
2826 13171 0.756294 TGAACTCTCCAACGCCAAGA 59.244 50.000 0.00 0.00 0.00 3.02
2829 13174 0.250295 CCTTGAACTCTCCAACGCCA 60.250 55.000 0.00 0.00 0.00 5.69
2830 13175 1.578206 GCCTTGAACTCTCCAACGCC 61.578 60.000 0.00 0.00 0.00 5.68
2831 13176 0.603975 AGCCTTGAACTCTCCAACGC 60.604 55.000 0.00 0.00 0.00 4.84
2833 13178 3.055094 TGGATAGCCTTGAACTCTCCAAC 60.055 47.826 0.00 0.00 37.44 3.77
2834 13179 3.055094 GTGGATAGCCTTGAACTCTCCAA 60.055 47.826 0.00 0.00 40.77 3.53
2835 13180 2.501723 GTGGATAGCCTTGAACTCTCCA 59.498 50.000 0.00 0.00 37.89 3.86
2836 13181 2.482142 CGTGGATAGCCTTGAACTCTCC 60.482 54.545 0.00 0.00 32.46 3.71
2837 13182 2.166664 ACGTGGATAGCCTTGAACTCTC 59.833 50.000 0.00 0.00 34.31 3.20
2838 13183 2.166664 GACGTGGATAGCCTTGAACTCT 59.833 50.000 0.00 0.00 34.31 3.24
2839 13184 2.541556 GACGTGGATAGCCTTGAACTC 58.458 52.381 0.00 0.00 34.31 3.01
2840 13185 1.207329 GGACGTGGATAGCCTTGAACT 59.793 52.381 0.00 0.00 34.31 3.01
2841 13186 1.066430 TGGACGTGGATAGCCTTGAAC 60.066 52.381 0.00 0.00 34.31 3.18
2842 13187 1.271856 TGGACGTGGATAGCCTTGAA 58.728 50.000 0.00 0.00 34.31 2.69
2844 13189 1.207089 TCTTGGACGTGGATAGCCTTG 59.793 52.381 0.00 0.00 34.31 3.61
2845 13190 1.482593 CTCTTGGACGTGGATAGCCTT 59.517 52.381 0.00 0.00 34.31 4.35
2847 13192 0.105039 CCTCTTGGACGTGGATAGCC 59.895 60.000 0.00 0.00 34.57 3.93
2848 13193 0.824759 ACCTCTTGGACGTGGATAGC 59.175 55.000 0.00 0.00 37.04 2.97
2849 13194 2.100197 TCACCTCTTGGACGTGGATAG 58.900 52.381 0.00 0.00 37.04 2.08
2850 13195 2.225382 TCACCTCTTGGACGTGGATA 57.775 50.000 0.00 0.00 37.04 2.59
2851 13196 1.208052 CATCACCTCTTGGACGTGGAT 59.792 52.381 0.00 0.00 37.04 3.41
2852 13197 0.608130 CATCACCTCTTGGACGTGGA 59.392 55.000 0.00 0.00 37.04 4.02
2853 13198 0.321671 ACATCACCTCTTGGACGTGG 59.678 55.000 0.00 0.00 37.04 4.94
2854 13199 1.800586 CAACATCACCTCTTGGACGTG 59.199 52.381 0.00 0.00 37.04 4.49
2855 13200 1.270839 CCAACATCACCTCTTGGACGT 60.271 52.381 0.00 0.00 37.25 4.34
2856 13201 1.270839 ACCAACATCACCTCTTGGACG 60.271 52.381 2.69 0.00 38.29 4.79
2859 13204 3.338249 CACTACCAACATCACCTCTTGG 58.662 50.000 0.00 0.00 40.40 3.61
2860 13205 2.744202 GCACTACCAACATCACCTCTTG 59.256 50.000 0.00 0.00 0.00 3.02
2861 13206 2.612972 CGCACTACCAACATCACCTCTT 60.613 50.000 0.00 0.00 0.00 2.85
2862 13207 1.066858 CGCACTACCAACATCACCTCT 60.067 52.381 0.00 0.00 0.00 3.69
2864 13209 0.973632 TCGCACTACCAACATCACCT 59.026 50.000 0.00 0.00 0.00 4.00
2865 13210 1.337823 ACTCGCACTACCAACATCACC 60.338 52.381 0.00 0.00 0.00 4.02
2866 13211 1.726791 CACTCGCACTACCAACATCAC 59.273 52.381 0.00 0.00 0.00 3.06
2867 13212 1.939381 GCACTCGCACTACCAACATCA 60.939 52.381 0.00 0.00 38.36 3.07
2868 13213 0.721718 GCACTCGCACTACCAACATC 59.278 55.000 0.00 0.00 38.36 3.06
2870 13215 1.443828 TGCACTCGCACTACCAACA 59.556 52.632 0.00 0.00 45.36 3.33
2902 13247 4.154347 GACGAGGGCCTGCTCTGG 62.154 72.222 12.95 0.00 0.00 3.86
2903 13248 4.154347 GGACGAGGGCCTGCTCTG 62.154 72.222 12.95 0.00 0.00 3.35
2905 13250 3.474570 ATGGACGAGGGCCTGCTC 61.475 66.667 12.95 4.36 0.00 4.26
2907 13252 4.864334 CCATGGACGAGGGCCTGC 62.864 72.222 12.95 1.12 0.00 4.85
2908 13253 3.391665 GACCATGGACGAGGGCCTG 62.392 68.421 21.47 6.05 0.00 4.85
2909 13254 3.083997 GACCATGGACGAGGGCCT 61.084 66.667 21.47 5.25 0.00 5.19
2910 13255 3.399181 TGACCATGGACGAGGGCC 61.399 66.667 21.47 0.00 29.23 5.80
2911 13256 2.125106 GTGACCATGGACGAGGGC 60.125 66.667 21.47 0.00 0.00 5.19
2912 13257 2.290287 TGGTGACCATGGACGAGGG 61.290 63.158 21.47 0.00 0.00 4.30
2913 13258 1.079127 GTGGTGACCATGGACGAGG 60.079 63.158 21.47 0.00 35.28 4.63
2914 13259 1.079127 GGTGGTGACCATGGACGAG 60.079 63.158 21.47 0.00 42.59 4.18
2915 13260 3.065306 GGTGGTGACCATGGACGA 58.935 61.111 21.47 0.64 42.59 4.20
2924 13269 3.254629 AGCACATCATGGTGGTGAC 57.745 52.632 11.45 5.14 46.76 3.67
2928 13273 0.813184 GGTGAAGCACATCATGGTGG 59.187 55.000 11.45 0.32 39.59 4.61
2935 13280 0.179181 CGCACATGGTGAAGCACATC 60.179 55.000 0.00 0.00 35.86 3.06
2936 13281 0.606130 TCGCACATGGTGAAGCACAT 60.606 50.000 0.00 0.00 35.86 3.21
2937 13282 1.227793 TCGCACATGGTGAAGCACA 60.228 52.632 0.00 0.00 35.86 4.57
2938 13283 0.950555 TCTCGCACATGGTGAAGCAC 60.951 55.000 0.00 0.00 35.23 4.40
2939 13284 0.036105 ATCTCGCACATGGTGAAGCA 60.036 50.000 0.00 0.00 35.23 3.91
2940 13285 0.376152 CATCTCGCACATGGTGAAGC 59.624 55.000 0.00 0.00 35.23 3.86
2941 13286 1.730501 ACATCTCGCACATGGTGAAG 58.269 50.000 0.00 0.00 35.23 3.02
2943 13288 1.001860 TCAACATCTCGCACATGGTGA 59.998 47.619 0.00 3.68 44.14 4.02
2944 13289 1.395954 CTCAACATCTCGCACATGGTG 59.604 52.381 0.00 0.00 39.90 4.17
2945 13290 1.730501 CTCAACATCTCGCACATGGT 58.269 50.000 0.00 0.00 0.00 3.55
2947 13292 0.376152 GGCTCAACATCTCGCACATG 59.624 55.000 0.00 0.00 0.00 3.21
2949 13294 0.671472 CAGGCTCAACATCTCGCACA 60.671 55.000 0.00 0.00 0.00 4.57
2950 13295 0.390340 TCAGGCTCAACATCTCGCAC 60.390 55.000 0.00 0.00 0.00 5.34
2951 13296 0.390340 GTCAGGCTCAACATCTCGCA 60.390 55.000 0.00 0.00 0.00 5.10
2952 13297 1.416813 CGTCAGGCTCAACATCTCGC 61.417 60.000 0.00 0.00 0.00 5.03
2953 13298 1.416813 GCGTCAGGCTCAACATCTCG 61.417 60.000 0.00 0.00 39.11 4.04
2955 13300 1.446792 CGCGTCAGGCTCAACATCT 60.447 57.895 0.00 0.00 40.44 2.90
2956 13301 2.456119 CCGCGTCAGGCTCAACATC 61.456 63.158 4.92 0.00 40.44 3.06
2958 13303 4.680237 CCCGCGTCAGGCTCAACA 62.680 66.667 4.92 0.00 40.44 3.33
2959 13304 4.373116 TCCCGCGTCAGGCTCAAC 62.373 66.667 4.92 0.00 40.44 3.18
2960 13305 4.069232 CTCCCGCGTCAGGCTCAA 62.069 66.667 4.92 0.00 40.44 3.02
2965 13310 4.200283 GAGAGCTCCCGCGTCAGG 62.200 72.222 10.93 0.00 42.32 3.86
2966 13311 4.544689 CGAGAGCTCCCGCGTCAG 62.545 72.222 10.93 0.48 42.32 3.51
2968 13313 4.244802 CTCGAGAGCTCCCGCGTC 62.245 72.222 13.43 1.01 42.32 5.19
2971 13316 3.141488 TTCCTCGAGAGCTCCCGC 61.141 66.667 15.71 0.55 0.00 6.13
2972 13317 1.595993 TTGTTCCTCGAGAGCTCCCG 61.596 60.000 15.71 11.94 0.00 5.14
2973 13318 0.174617 CTTGTTCCTCGAGAGCTCCC 59.825 60.000 15.71 0.00 0.00 4.30
2974 13319 1.135228 GTCTTGTTCCTCGAGAGCTCC 60.135 57.143 15.71 0.68 37.26 4.70
2975 13320 1.542030 TGTCTTGTTCCTCGAGAGCTC 59.458 52.381 15.71 5.27 37.26 4.09
2977 13322 2.333014 CTTGTCTTGTTCCTCGAGAGC 58.667 52.381 15.71 3.92 37.26 4.09
2979 13324 1.686587 TGCTTGTCTTGTTCCTCGAGA 59.313 47.619 15.71 0.00 34.47 4.04
2980 13325 2.154854 TGCTTGTCTTGTTCCTCGAG 57.845 50.000 5.13 5.13 0.00 4.04
2981 13326 2.210116 GTTGCTTGTCTTGTTCCTCGA 58.790 47.619 0.00 0.00 0.00 4.04
2982 13327 1.070577 CGTTGCTTGTCTTGTTCCTCG 60.071 52.381 0.00 0.00 0.00 4.63
2983 13328 2.032808 GTCGTTGCTTGTCTTGTTCCTC 60.033 50.000 0.00 0.00 0.00 3.71
2984 13329 1.940613 GTCGTTGCTTGTCTTGTTCCT 59.059 47.619 0.00 0.00 0.00 3.36
2985 13330 1.002792 GGTCGTTGCTTGTCTTGTTCC 60.003 52.381 0.00 0.00 0.00 3.62
2986 13331 1.002792 GGGTCGTTGCTTGTCTTGTTC 60.003 52.381 0.00 0.00 0.00 3.18
2987 13332 1.021968 GGGTCGTTGCTTGTCTTGTT 58.978 50.000 0.00 0.00 0.00 2.83
2989 13334 2.163818 TAGGGTCGTTGCTTGTCTTG 57.836 50.000 0.00 0.00 0.00 3.02
2991 13336 1.414919 TGTTAGGGTCGTTGCTTGTCT 59.585 47.619 0.00 0.00 0.00 3.41
2992 13337 1.529865 GTGTTAGGGTCGTTGCTTGTC 59.470 52.381 0.00 0.00 0.00 3.18
2993 13338 1.134340 TGTGTTAGGGTCGTTGCTTGT 60.134 47.619 0.00 0.00 0.00 3.16
2994 13339 1.588674 TGTGTTAGGGTCGTTGCTTG 58.411 50.000 0.00 0.00 0.00 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.