Multiple sequence alignment - TraesCS3D01G380500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G380500 chr3D 100.000 3383 0 0 1 3383 496769556 496766174 0.000000e+00 6248
1 TraesCS3D01G380500 chr3D 100.000 76 0 0 3307 3382 403981237 403981312 1.270000e-29 141
2 TraesCS3D01G380500 chr3A 91.953 1802 93 29 690 2472 638016913 638015145 0.000000e+00 2477
3 TraesCS3D01G380500 chr3A 92.417 844 60 4 2464 3303 638007490 638006647 0.000000e+00 1201
4 TraesCS3D01G380500 chr3A 93.469 490 23 4 13 498 638017395 638016911 0.000000e+00 719
5 TraesCS3D01G380500 chr3A 100.000 78 0 0 3306 3383 64490914 64490837 9.780000e-31 145
6 TraesCS3D01G380500 chr3B 92.656 1457 67 26 686 2105 656067283 656065830 0.000000e+00 2061
7 TraesCS3D01G380500 chr3B 88.710 806 57 11 2511 3306 656016579 656015798 0.000000e+00 953
8 TraesCS3D01G380500 chr3B 91.704 446 28 3 2076 2515 656065823 656065381 8.030000e-171 610
9 TraesCS3D01G380500 chr3B 98.901 182 1 1 499 680 472603601 472603781 1.170000e-84 324
10 TraesCS3D01G380500 chr3B 92.760 221 14 2 279 498 656067508 656067289 5.450000e-83 318
11 TraesCS3D01G380500 chr3B 93.233 133 9 0 1 133 656067638 656067506 2.660000e-46 196
12 TraesCS3D01G380500 chr5B 85.943 1124 102 35 950 2036 661525094 661523990 0.000000e+00 1149
13 TraesCS3D01G380500 chr5B 86.660 967 88 20 1104 2033 661612161 661613123 0.000000e+00 1033
14 TraesCS3D01G380500 chr5A 88.382 964 77 16 1104 2036 653475324 653474365 0.000000e+00 1127
15 TraesCS3D01G380500 chr5A 85.689 1111 95 34 975 2033 653563257 653564355 0.000000e+00 1112
16 TraesCS3D01G380500 chr5A 98.925 186 1 1 495 680 521931232 521931048 7.000000e-87 331
17 TraesCS3D01G380500 chr5A 100.000 78 0 0 3306 3383 689015073 689015150 9.780000e-31 145
18 TraesCS3D01G380500 chr5A 74.790 357 46 20 74 402 653475966 653475626 1.650000e-23 121
19 TraesCS3D01G380500 chr5D 85.482 1109 104 29 975 2033 526432286 526433387 0.000000e+00 1103
20 TraesCS3D01G380500 chr5D 87.645 947 84 15 1120 2036 526411246 526410303 0.000000e+00 1070
21 TraesCS3D01G380500 chr5D 90.762 433 28 3 1597 2017 526422496 526422928 4.900000e-158 568
22 TraesCS3D01G380500 chr2B 80.132 906 149 25 1130 2030 447825871 447824992 0.000000e+00 647
23 TraesCS3D01G380500 chr2B 98.901 182 1 1 498 679 615367271 615367451 1.170000e-84 324
24 TraesCS3D01G380500 chr2B 98.895 181 1 1 499 679 226731507 226731328 4.210000e-84 322
25 TraesCS3D01G380500 chr7B 99.465 187 1 0 499 685 130341731 130341545 1.160000e-89 340
26 TraesCS3D01G380500 chr7B 100.000 181 0 0 499 679 19364884 19365064 5.410000e-88 335
27 TraesCS3D01G380500 chr4B 98.895 181 1 1 499 679 407990386 407990565 4.210000e-84 322
28 TraesCS3D01G380500 chr4A 98.343 181 2 1 499 679 685320874 685321053 1.960000e-82 316
29 TraesCS3D01G380500 chr4A 98.343 181 2 1 499 679 714757805 714757626 1.960000e-82 316
30 TraesCS3D01G380500 chr1B 81.818 363 45 10 1328 1672 36276265 36275906 5.520000e-73 285
31 TraesCS3D01G380500 chr7D 100.000 77 0 0 3307 3383 355257697 355257621 3.520000e-30 143
32 TraesCS3D01G380500 chr7A 100.000 77 0 0 3307 3383 622384027 622384103 3.520000e-30 143
33 TraesCS3D01G380500 chr2A 100.000 77 0 0 3307 3383 633415176 633415252 3.520000e-30 143
34 TraesCS3D01G380500 chr6D 98.718 78 1 0 3306 3383 211191176 211191253 4.550000e-29 139
35 TraesCS3D01G380500 chr6D 98.718 78 1 0 3306 3383 395304217 395304140 4.550000e-29 139
36 TraesCS3D01G380500 chr6B 97.561 82 1 1 3303 3383 252268728 252268647 4.550000e-29 139


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G380500 chr3D 496766174 496769556 3382 True 6248.00 6248 100.00000 1 3383 1 chr3D.!!$R1 3382
1 TraesCS3D01G380500 chr3A 638015145 638017395 2250 True 1598.00 2477 92.71100 13 2472 2 chr3A.!!$R3 2459
2 TraesCS3D01G380500 chr3A 638006647 638007490 843 True 1201.00 1201 92.41700 2464 3303 1 chr3A.!!$R2 839
3 TraesCS3D01G380500 chr3B 656015798 656016579 781 True 953.00 953 88.71000 2511 3306 1 chr3B.!!$R1 795
4 TraesCS3D01G380500 chr3B 656065381 656067638 2257 True 796.25 2061 92.58825 1 2515 4 chr3B.!!$R2 2514
5 TraesCS3D01G380500 chr5B 661523990 661525094 1104 True 1149.00 1149 85.94300 950 2036 1 chr5B.!!$R1 1086
6 TraesCS3D01G380500 chr5B 661612161 661613123 962 False 1033.00 1033 86.66000 1104 2033 1 chr5B.!!$F1 929
7 TraesCS3D01G380500 chr5A 653563257 653564355 1098 False 1112.00 1112 85.68900 975 2033 1 chr5A.!!$F1 1058
8 TraesCS3D01G380500 chr5A 653474365 653475966 1601 True 624.00 1127 81.58600 74 2036 2 chr5A.!!$R2 1962
9 TraesCS3D01G380500 chr5D 526432286 526433387 1101 False 1103.00 1103 85.48200 975 2033 1 chr5D.!!$F2 1058
10 TraesCS3D01G380500 chr5D 526410303 526411246 943 True 1070.00 1070 87.64500 1120 2036 1 chr5D.!!$R1 916
11 TraesCS3D01G380500 chr2B 447824992 447825871 879 True 647.00 647 80.13200 1130 2030 1 chr2B.!!$R2 900

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
687 721 0.027455 TAGCATTTTTGCCGATCGCG 59.973 50.0 10.32 0.0 42.08 5.87 F
1090 1252 0.310232 GGTTACGCTAGCTACTCCGG 59.690 60.0 13.93 0.0 0.00 5.14 F
1092 1254 0.465097 TTACGCTAGCTACTCCGGCT 60.465 55.0 13.93 0.0 43.02 5.52 F
1118 1294 0.602562 CGAAAGGCCAGGAAAATGCA 59.397 50.0 5.01 0.0 0.00 3.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1911 2135 1.617839 CCTCCCCCTCTTGCTCCTT 60.618 63.158 0.00 0.00 0.00 3.36 R
2156 2420 2.468532 AGAGCAAAAACGTTTGTCCG 57.531 45.000 15.46 4.69 45.06 4.79 R
2302 2567 4.222145 TCACGAGGTATAAATATCCAGCCC 59.778 45.833 0.00 0.00 0.00 5.19 R
2593 2859 4.517075 TGCACCTAATCATCGACAAAAACA 59.483 37.500 0.00 0.00 0.00 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 1.883926 ACGTGCTTTCGGGCTTAAAAT 59.116 42.857 0.00 0.00 34.94 1.82
40 41 3.075884 ACGTGCTTTCGGGCTTAAAATA 58.924 40.909 0.00 0.00 34.94 1.40
56 57 6.967199 GCTTAAAATAGAAGAATTGTCACGGG 59.033 38.462 0.00 0.00 0.00 5.28
100 101 3.060003 CGTAAGAAGAGCATAGCACATGC 60.060 47.826 13.77 13.77 42.55 4.06
101 102 6.340932 CGTAAGAAGAGCATAGCACATGCG 62.341 50.000 15.19 0.00 45.43 4.73
121 128 0.605589 ACAAGAACTAGCCGGCCAAC 60.606 55.000 26.15 10.73 0.00 3.77
135 142 1.941812 CCAACGCTTCACAGACCAC 59.058 57.895 0.00 0.00 0.00 4.16
178 196 1.071987 GCGCCATCCATCTCATCCA 59.928 57.895 0.00 0.00 0.00 3.41
179 197 1.233285 GCGCCATCCATCTCATCCAC 61.233 60.000 0.00 0.00 0.00 4.02
433 466 1.381928 CCAGAATCCGCAGCAATGCT 61.382 55.000 0.00 0.00 40.77 3.79
458 491 2.818274 GGATCGTGGAACCGGTGC 60.818 66.667 8.52 5.63 0.00 5.01
513 547 4.891566 CGGAGCTTTGCTAGACGT 57.108 55.556 0.00 0.00 39.88 4.34
515 549 1.546834 CGGAGCTTTGCTAGACGTAC 58.453 55.000 0.00 0.00 39.88 3.67
516 550 1.546834 GGAGCTTTGCTAGACGTACG 58.453 55.000 15.01 15.01 39.88 3.67
517 551 1.546834 GAGCTTTGCTAGACGTACGG 58.453 55.000 21.06 2.24 39.88 4.02
518 552 1.131883 GAGCTTTGCTAGACGTACGGA 59.868 52.381 21.06 3.34 39.88 4.69
519 553 1.132643 AGCTTTGCTAGACGTACGGAG 59.867 52.381 21.06 14.21 36.99 4.63
520 554 3.456798 AGCTTTGCTAGACGTACGGAGT 61.457 50.000 21.06 5.86 40.87 3.85
521 555 2.670509 GCTTTGCTAGACGTACGGAGTT 60.671 50.000 21.06 0.00 37.78 3.01
522 556 3.572584 CTTTGCTAGACGTACGGAGTTT 58.427 45.455 21.06 0.00 37.78 2.66
523 557 3.648339 TTGCTAGACGTACGGAGTTTT 57.352 42.857 21.06 0.00 37.78 2.43
524 558 4.764679 TTGCTAGACGTACGGAGTTTTA 57.235 40.909 21.06 0.00 37.78 1.52
525 559 4.083581 TGCTAGACGTACGGAGTTTTAC 57.916 45.455 21.06 1.74 37.78 2.01
526 560 3.501828 TGCTAGACGTACGGAGTTTTACA 59.498 43.478 21.06 4.41 37.78 2.41
527 561 4.094212 GCTAGACGTACGGAGTTTTACAG 58.906 47.826 21.06 4.44 37.78 2.74
528 562 3.565905 AGACGTACGGAGTTTTACAGG 57.434 47.619 21.06 0.00 37.78 4.00
529 563 3.149196 AGACGTACGGAGTTTTACAGGA 58.851 45.455 21.06 0.00 37.78 3.86
530 564 3.190118 AGACGTACGGAGTTTTACAGGAG 59.810 47.826 21.06 0.00 37.78 3.69
531 565 2.229784 ACGTACGGAGTTTTACAGGAGG 59.770 50.000 21.06 0.00 37.78 4.30
532 566 2.229784 CGTACGGAGTTTTACAGGAGGT 59.770 50.000 7.57 0.00 37.78 3.85
533 567 3.305608 CGTACGGAGTTTTACAGGAGGTT 60.306 47.826 7.57 0.00 37.78 3.50
534 568 3.851458 ACGGAGTTTTACAGGAGGTTT 57.149 42.857 0.00 0.00 37.78 3.27
535 569 4.961438 ACGGAGTTTTACAGGAGGTTTA 57.039 40.909 0.00 0.00 37.78 2.01
536 570 4.635223 ACGGAGTTTTACAGGAGGTTTAC 58.365 43.478 0.00 0.00 37.78 2.01
537 571 4.101430 ACGGAGTTTTACAGGAGGTTTACA 59.899 41.667 0.00 0.00 37.78 2.41
538 572 4.689345 CGGAGTTTTACAGGAGGTTTACAG 59.311 45.833 0.00 0.00 0.00 2.74
539 573 5.001874 GGAGTTTTACAGGAGGTTTACAGG 58.998 45.833 0.00 0.00 0.00 4.00
540 574 5.455755 GGAGTTTTACAGGAGGTTTACAGGT 60.456 44.000 0.00 0.00 0.00 4.00
541 575 6.009908 AGTTTTACAGGAGGTTTACAGGTT 57.990 37.500 0.00 0.00 0.00 3.50
542 576 5.826208 AGTTTTACAGGAGGTTTACAGGTTG 59.174 40.000 0.00 0.00 0.00 3.77
543 577 2.271944 ACAGGAGGTTTACAGGTTGC 57.728 50.000 0.00 0.00 0.00 4.17
544 578 1.774856 ACAGGAGGTTTACAGGTTGCT 59.225 47.619 0.00 0.00 0.00 3.91
545 579 2.174854 ACAGGAGGTTTACAGGTTGCTT 59.825 45.455 0.00 0.00 0.00 3.91
546 580 3.393278 ACAGGAGGTTTACAGGTTGCTTA 59.607 43.478 0.00 0.00 0.00 3.09
547 581 4.141344 ACAGGAGGTTTACAGGTTGCTTAA 60.141 41.667 0.00 0.00 0.00 1.85
548 582 5.010282 CAGGAGGTTTACAGGTTGCTTAAT 58.990 41.667 0.00 0.00 0.00 1.40
549 583 6.177610 CAGGAGGTTTACAGGTTGCTTAATA 58.822 40.000 0.00 0.00 0.00 0.98
550 584 6.316390 CAGGAGGTTTACAGGTTGCTTAATAG 59.684 42.308 0.00 0.00 0.00 1.73
551 585 6.012771 AGGAGGTTTACAGGTTGCTTAATAGT 60.013 38.462 0.00 0.00 0.00 2.12
552 586 6.093633 GGAGGTTTACAGGTTGCTTAATAGTG 59.906 42.308 0.00 0.00 0.00 2.74
553 587 6.775708 AGGTTTACAGGTTGCTTAATAGTGA 58.224 36.000 0.00 0.00 0.00 3.41
554 588 7.402862 AGGTTTACAGGTTGCTTAATAGTGAT 58.597 34.615 0.00 0.00 0.00 3.06
555 589 7.888546 AGGTTTACAGGTTGCTTAATAGTGATT 59.111 33.333 0.00 0.00 0.00 2.57
556 590 7.968405 GGTTTACAGGTTGCTTAATAGTGATTG 59.032 37.037 0.00 0.00 0.00 2.67
557 591 7.624360 TTACAGGTTGCTTAATAGTGATTGG 57.376 36.000 0.00 0.00 0.00 3.16
558 592 4.399303 ACAGGTTGCTTAATAGTGATTGGC 59.601 41.667 0.00 0.00 0.00 4.52
559 593 3.954258 AGGTTGCTTAATAGTGATTGGCC 59.046 43.478 0.00 0.00 0.00 5.36
560 594 3.243068 GGTTGCTTAATAGTGATTGGCCG 60.243 47.826 0.00 0.00 0.00 6.13
561 595 3.552132 TGCTTAATAGTGATTGGCCGA 57.448 42.857 0.00 0.00 0.00 5.54
562 596 3.466836 TGCTTAATAGTGATTGGCCGAG 58.533 45.455 0.00 0.00 0.00 4.63
563 597 2.808543 GCTTAATAGTGATTGGCCGAGG 59.191 50.000 0.00 0.00 0.00 4.63
564 598 3.494398 GCTTAATAGTGATTGGCCGAGGA 60.494 47.826 0.00 0.00 0.00 3.71
565 599 4.804261 GCTTAATAGTGATTGGCCGAGGAT 60.804 45.833 0.00 0.00 0.00 3.24
566 600 3.864789 AATAGTGATTGGCCGAGGATT 57.135 42.857 0.00 0.00 0.00 3.01
567 601 2.620251 TAGTGATTGGCCGAGGATTG 57.380 50.000 0.00 0.00 0.00 2.67
568 602 0.911769 AGTGATTGGCCGAGGATTGA 59.088 50.000 0.00 0.00 0.00 2.57
569 603 1.492176 AGTGATTGGCCGAGGATTGAT 59.508 47.619 0.00 0.00 0.00 2.57
570 604 2.092212 AGTGATTGGCCGAGGATTGATT 60.092 45.455 0.00 0.00 0.00 2.57
571 605 3.136443 AGTGATTGGCCGAGGATTGATTA 59.864 43.478 0.00 0.00 0.00 1.75
572 606 3.882888 GTGATTGGCCGAGGATTGATTAA 59.117 43.478 0.00 0.00 0.00 1.40
573 607 4.023707 GTGATTGGCCGAGGATTGATTAAG 60.024 45.833 0.00 0.00 0.00 1.85
574 608 3.924114 TTGGCCGAGGATTGATTAAGA 57.076 42.857 0.00 0.00 0.00 2.10
575 609 4.437682 TTGGCCGAGGATTGATTAAGAT 57.562 40.909 0.00 0.00 0.00 2.40
576 610 3.743521 TGGCCGAGGATTGATTAAGATG 58.256 45.455 0.00 0.00 0.00 2.90
577 611 2.485814 GGCCGAGGATTGATTAAGATGC 59.514 50.000 0.00 0.00 0.00 3.91
578 612 3.141398 GCCGAGGATTGATTAAGATGCA 58.859 45.455 0.00 0.00 0.00 3.96
579 613 3.058639 GCCGAGGATTGATTAAGATGCAC 60.059 47.826 0.00 0.00 0.00 4.57
580 614 3.185188 CCGAGGATTGATTAAGATGCACG 59.815 47.826 0.00 0.00 0.00 5.34
581 615 3.185188 CGAGGATTGATTAAGATGCACGG 59.815 47.826 0.00 0.00 0.00 4.94
582 616 3.480470 AGGATTGATTAAGATGCACGGG 58.520 45.455 0.00 0.00 0.00 5.28
583 617 2.030805 GGATTGATTAAGATGCACGGGC 60.031 50.000 0.34 0.34 41.68 6.13
584 618 1.388547 TTGATTAAGATGCACGGGCC 58.611 50.000 7.46 0.00 40.13 5.80
585 619 0.465460 TGATTAAGATGCACGGGCCC 60.465 55.000 13.57 13.57 40.13 5.80
586 620 0.465460 GATTAAGATGCACGGGCCCA 60.465 55.000 24.92 1.02 40.13 5.36
587 621 0.751643 ATTAAGATGCACGGGCCCAC 60.752 55.000 24.92 11.40 40.13 4.61
588 622 2.830186 TTAAGATGCACGGGCCCACC 62.830 60.000 24.92 9.66 40.13 4.61
597 631 2.283604 GGGCCCACCGGTGAAAAT 60.284 61.111 36.07 0.00 36.48 1.82
598 632 2.348104 GGGCCCACCGGTGAAAATC 61.348 63.158 36.07 18.36 36.48 2.17
599 633 1.605165 GGCCCACCGGTGAAAATCA 60.605 57.895 36.07 0.00 0.00 2.57
600 634 1.595093 GGCCCACCGGTGAAAATCAG 61.595 60.000 36.07 16.57 0.00 2.90
601 635 1.595093 GCCCACCGGTGAAAATCAGG 61.595 60.000 36.07 25.31 0.00 3.86
602 636 0.965363 CCCACCGGTGAAAATCAGGG 60.965 60.000 36.07 21.54 0.00 4.45
603 637 0.965363 CCACCGGTGAAAATCAGGGG 60.965 60.000 36.07 11.23 0.00 4.79
604 638 0.965363 CACCGGTGAAAATCAGGGGG 60.965 60.000 31.31 0.00 0.00 5.40
621 655 3.117657 GGGGGCCAATTAGAAGAGC 57.882 57.895 4.39 0.00 0.00 4.09
622 656 0.819666 GGGGGCCAATTAGAAGAGCG 60.820 60.000 4.39 0.00 0.00 5.03
623 657 0.180406 GGGGCCAATTAGAAGAGCGA 59.820 55.000 4.39 0.00 0.00 4.93
624 658 1.408266 GGGGCCAATTAGAAGAGCGAA 60.408 52.381 4.39 0.00 0.00 4.70
625 659 2.576615 GGGCCAATTAGAAGAGCGAAT 58.423 47.619 4.39 0.00 0.00 3.34
626 660 2.291741 GGGCCAATTAGAAGAGCGAATG 59.708 50.000 4.39 0.00 0.00 2.67
627 661 2.291741 GGCCAATTAGAAGAGCGAATGG 59.708 50.000 0.00 0.00 0.00 3.16
628 662 2.945668 GCCAATTAGAAGAGCGAATGGT 59.054 45.455 0.00 0.00 0.00 3.55
629 663 3.002759 GCCAATTAGAAGAGCGAATGGTC 59.997 47.826 0.00 0.00 42.99 4.02
649 683 6.704289 GGTCTTTAACCTGTAAAAACCTGT 57.296 37.500 0.00 0.00 45.45 4.00
650 684 7.806409 GGTCTTTAACCTGTAAAAACCTGTA 57.194 36.000 0.00 0.00 45.45 2.74
651 685 7.868775 GGTCTTTAACCTGTAAAAACCTGTAG 58.131 38.462 0.00 0.00 45.45 2.74
652 686 7.716560 GGTCTTTAACCTGTAAAAACCTGTAGA 59.283 37.037 0.00 0.00 45.45 2.59
653 687 9.112725 GTCTTTAACCTGTAAAAACCTGTAGAA 57.887 33.333 0.00 0.00 0.00 2.10
654 688 9.856162 TCTTTAACCTGTAAAAACCTGTAGAAT 57.144 29.630 0.00 0.00 0.00 2.40
655 689 9.893305 CTTTAACCTGTAAAAACCTGTAGAATG 57.107 33.333 0.00 0.00 0.00 2.67
656 690 9.629878 TTTAACCTGTAAAAACCTGTAGAATGA 57.370 29.630 0.00 0.00 0.00 2.57
657 691 7.745620 AACCTGTAAAAACCTGTAGAATGAG 57.254 36.000 0.00 0.00 0.00 2.90
658 692 5.705905 ACCTGTAAAAACCTGTAGAATGAGC 59.294 40.000 0.00 0.00 0.00 4.26
659 693 5.123979 CCTGTAAAAACCTGTAGAATGAGCC 59.876 44.000 0.00 0.00 0.00 4.70
660 694 5.876357 TGTAAAAACCTGTAGAATGAGCCT 58.124 37.500 0.00 0.00 0.00 4.58
661 695 5.705441 TGTAAAAACCTGTAGAATGAGCCTG 59.295 40.000 0.00 0.00 0.00 4.85
662 696 4.373156 AAAACCTGTAGAATGAGCCTGT 57.627 40.909 0.00 0.00 0.00 4.00
663 697 5.499004 AAAACCTGTAGAATGAGCCTGTA 57.501 39.130 0.00 0.00 0.00 2.74
664 698 4.473477 AACCTGTAGAATGAGCCTGTAC 57.527 45.455 0.00 0.00 0.00 2.90
665 699 2.427453 ACCTGTAGAATGAGCCTGTACG 59.573 50.000 0.00 0.00 0.00 3.67
666 700 2.427453 CCTGTAGAATGAGCCTGTACGT 59.573 50.000 0.00 0.00 0.00 3.57
667 701 3.439293 CTGTAGAATGAGCCTGTACGTG 58.561 50.000 0.00 0.00 0.00 4.49
668 702 2.823747 TGTAGAATGAGCCTGTACGTGT 59.176 45.455 0.00 0.00 0.00 4.49
669 703 4.011698 TGTAGAATGAGCCTGTACGTGTA 58.988 43.478 0.00 0.00 0.00 2.90
670 704 3.784701 AGAATGAGCCTGTACGTGTAG 57.215 47.619 0.00 0.00 0.00 2.74
671 705 2.159226 AGAATGAGCCTGTACGTGTAGC 60.159 50.000 0.00 0.00 0.00 3.58
672 706 1.182667 ATGAGCCTGTACGTGTAGCA 58.817 50.000 0.00 0.00 0.00 3.49
673 707 1.182667 TGAGCCTGTACGTGTAGCAT 58.817 50.000 0.00 0.00 0.00 3.79
674 708 1.548719 TGAGCCTGTACGTGTAGCATT 59.451 47.619 0.00 0.00 0.00 3.56
675 709 2.028476 TGAGCCTGTACGTGTAGCATTT 60.028 45.455 0.00 0.00 0.00 2.32
676 710 3.000727 GAGCCTGTACGTGTAGCATTTT 58.999 45.455 0.00 0.00 0.00 1.82
677 711 3.408634 AGCCTGTACGTGTAGCATTTTT 58.591 40.909 0.00 0.00 0.00 1.94
678 712 3.188460 AGCCTGTACGTGTAGCATTTTTG 59.812 43.478 0.00 0.00 0.00 2.44
679 713 3.488489 CCTGTACGTGTAGCATTTTTGC 58.512 45.455 0.00 0.00 0.00 3.68
680 714 3.488489 CTGTACGTGTAGCATTTTTGCC 58.512 45.455 0.00 0.00 34.90 4.52
681 715 2.096169 TGTACGTGTAGCATTTTTGCCG 60.096 45.455 0.00 0.00 34.90 5.69
682 716 1.231221 ACGTGTAGCATTTTTGCCGA 58.769 45.000 0.00 0.00 34.90 5.54
683 717 1.810151 ACGTGTAGCATTTTTGCCGAT 59.190 42.857 0.00 0.00 34.90 4.18
684 718 2.159572 ACGTGTAGCATTTTTGCCGATC 60.160 45.455 0.00 0.00 34.90 3.69
685 719 2.440501 GTGTAGCATTTTTGCCGATCG 58.559 47.619 8.51 8.51 34.90 3.69
686 720 1.202132 TGTAGCATTTTTGCCGATCGC 60.202 47.619 10.32 6.08 34.90 4.58
687 721 0.027455 TAGCATTTTTGCCGATCGCG 59.973 50.000 10.32 0.00 42.08 5.87
688 722 1.514014 GCATTTTTGCCGATCGCGT 60.514 52.632 10.32 0.00 42.08 6.01
689 723 1.732474 GCATTTTTGCCGATCGCGTG 61.732 55.000 10.32 0.00 42.08 5.34
690 724 1.514014 ATTTTTGCCGATCGCGTGC 60.514 52.632 10.32 8.83 42.08 5.34
691 725 3.919859 TTTTTGCCGATCGCGTGCG 62.920 57.895 10.32 8.14 42.08 5.34
778 831 0.471211 ACTCTCTGTTCGGAACCCCA 60.471 55.000 17.62 0.00 0.00 4.96
1069 1231 3.726517 CGGCCGCTTGTGGAGTTG 61.727 66.667 14.67 0.00 0.00 3.16
1072 1234 2.908073 GCCGCTTGTGGAGTTGTGG 61.908 63.158 4.17 0.00 0.00 4.17
1073 1235 1.525995 CCGCTTGTGGAGTTGTGGT 60.526 57.895 0.00 0.00 0.00 4.16
1074 1236 1.101049 CCGCTTGTGGAGTTGTGGTT 61.101 55.000 0.00 0.00 0.00 3.67
1075 1237 1.588674 CGCTTGTGGAGTTGTGGTTA 58.411 50.000 0.00 0.00 0.00 2.85
1076 1238 1.263217 CGCTTGTGGAGTTGTGGTTAC 59.737 52.381 0.00 0.00 0.00 2.50
1077 1239 1.263217 GCTTGTGGAGTTGTGGTTACG 59.737 52.381 0.00 0.00 0.00 3.18
1078 1240 1.263217 CTTGTGGAGTTGTGGTTACGC 59.737 52.381 0.00 0.00 0.00 4.42
1080 1242 1.687660 TGTGGAGTTGTGGTTACGCTA 59.312 47.619 0.00 0.00 0.00 4.26
1082 1244 1.337447 TGGAGTTGTGGTTACGCTAGC 60.337 52.381 4.06 4.06 0.00 3.42
1083 1245 1.067071 GGAGTTGTGGTTACGCTAGCT 60.067 52.381 13.93 2.46 0.00 3.32
1084 1246 2.165030 GGAGTTGTGGTTACGCTAGCTA 59.835 50.000 13.93 1.43 0.00 3.32
1086 1248 2.824341 AGTTGTGGTTACGCTAGCTACT 59.176 45.455 13.93 0.00 0.00 2.57
1087 1249 3.119566 AGTTGTGGTTACGCTAGCTACTC 60.120 47.826 13.93 0.89 0.00 2.59
1088 1250 1.747355 TGTGGTTACGCTAGCTACTCC 59.253 52.381 13.93 10.54 0.00 3.85
1090 1252 0.310232 GGTTACGCTAGCTACTCCGG 59.690 60.000 13.93 0.00 0.00 5.14
1092 1254 0.465097 TTACGCTAGCTACTCCGGCT 60.465 55.000 13.93 0.00 43.02 5.52
1099 1261 2.799371 CTACTCCGGCTGTCGACC 59.201 66.667 14.12 0.00 42.43 4.79
1118 1294 0.602562 CGAAAGGCCAGGAAAATGCA 59.397 50.000 5.01 0.00 0.00 3.96
1384 1572 0.957395 CAGTTCCACGGATGCTGCTT 60.957 55.000 0.00 0.00 0.00 3.91
1415 1603 1.823295 CCGATCAATGTCTCCCCGT 59.177 57.895 0.00 0.00 0.00 5.28
2019 2243 2.997897 AGCTTCCTCGCCTCCGTT 60.998 61.111 0.00 0.00 35.54 4.44
2183 2447 4.603231 AACGTTTTTGCTCTTCGTACAA 57.397 36.364 0.00 0.00 34.38 2.41
2209 2473 3.125573 GCCGGAGAGCGGGTTTTC 61.126 66.667 5.05 0.00 36.89 2.29
2315 2580 5.661503 TTCAATCAGGGGCTGGATATTTA 57.338 39.130 0.00 0.00 31.51 1.40
2401 2666 5.853936 TCATATTATGGGACGAAGGAAGTG 58.146 41.667 3.89 0.00 0.00 3.16
2404 2669 0.324943 ATGGGACGAAGGAAGTGTGG 59.675 55.000 0.00 0.00 0.00 4.17
2407 2672 0.613777 GGACGAAGGAAGTGTGGGAT 59.386 55.000 0.00 0.00 0.00 3.85
2437 2702 6.026947 ACGAAGAATTGTCTACTAGCACTT 57.973 37.500 0.00 0.00 32.16 3.16
2456 2722 5.385617 CACTTAATTCACTTTTGAGAGCCG 58.614 41.667 0.00 0.00 31.71 5.52
2458 2724 5.179555 ACTTAATTCACTTTTGAGAGCCGAC 59.820 40.000 0.00 0.00 31.71 4.79
2480 2746 7.251281 CGACATGTAGTTGAATGACTAGAAGA 58.749 38.462 0.00 0.00 33.04 2.87
2495 2761 2.313317 AGAAGAGTGGTTGTACACGGA 58.687 47.619 0.00 0.00 45.80 4.69
2527 2793 4.336433 GTGGTTGTATCCAATGTCCATCAG 59.664 45.833 0.00 0.00 39.34 2.90
2556 2822 2.484264 ACTTCAAGTTTGATACCTGCGC 59.516 45.455 0.00 0.00 37.00 6.09
2613 2879 7.554118 AGATGATGTTTTTGTCGATGATTAGGT 59.446 33.333 0.00 0.00 0.00 3.08
2775 3049 4.836825 ACTATTGTGAGAATGGTGGTCAG 58.163 43.478 0.00 0.00 0.00 3.51
2798 3072 3.113043 AGACCCCAAACTATAGGTGTCC 58.887 50.000 4.43 0.00 31.10 4.02
2847 3121 9.113876 GAACTATTCACGTTTCTATTTTGTTGG 57.886 33.333 0.00 0.00 0.00 3.77
2898 3173 3.074390 ACAATGATCCCTCAAGTTGGTCA 59.926 43.478 2.34 1.34 34.37 4.02
2950 3225 1.223187 TTCCAAGAACGGCGAACTTC 58.777 50.000 16.62 7.34 0.00 3.01
3101 3377 3.604875 TGACGTCCAATAGAAAGACCC 57.395 47.619 14.12 0.00 0.00 4.46
3138 3414 7.527457 AGCGAAACTATGTTCCTCAAAATTAC 58.473 34.615 0.00 0.00 0.00 1.89
3188 3467 4.776795 AAAAGACAACACCGAACTTTGT 57.223 36.364 0.00 0.00 36.16 2.83
3240 3519 2.620115 CAATGCCGGCAGACATAATCTT 59.380 45.455 35.36 17.72 34.41 2.40
3310 3589 2.136298 TGGCAACAGAGGTTTTGTGA 57.864 45.000 0.00 0.00 46.17 3.58
3311 3590 1.748493 TGGCAACAGAGGTTTTGTGAC 59.252 47.619 0.00 0.00 46.17 3.67
3312 3591 1.268539 GGCAACAGAGGTTTTGTGACG 60.269 52.381 0.00 0.00 34.21 4.35
3313 3592 1.859998 GCAACAGAGGTTTTGTGACGC 60.860 52.381 0.00 0.00 34.21 5.19
3314 3593 1.021968 AACAGAGGTTTTGTGACGCC 58.978 50.000 0.00 0.00 31.83 5.68
3315 3594 0.818040 ACAGAGGTTTTGTGACGCCC 60.818 55.000 0.00 0.00 0.00 6.13
3316 3595 1.597027 AGAGGTTTTGTGACGCCCG 60.597 57.895 0.00 0.00 0.00 6.13
3317 3596 2.593436 AGGTTTTGTGACGCCCGG 60.593 61.111 0.00 0.00 0.00 5.73
3318 3597 2.592287 GGTTTTGTGACGCCCGGA 60.592 61.111 0.73 0.00 0.00 5.14
3319 3598 1.969589 GGTTTTGTGACGCCCGGAT 60.970 57.895 0.73 0.00 0.00 4.18
3320 3599 0.674269 GGTTTTGTGACGCCCGGATA 60.674 55.000 0.73 0.00 0.00 2.59
3321 3600 1.158434 GTTTTGTGACGCCCGGATAA 58.842 50.000 0.73 0.00 0.00 1.75
3322 3601 1.741145 GTTTTGTGACGCCCGGATAAT 59.259 47.619 0.73 0.00 0.00 1.28
3323 3602 2.116827 TTTGTGACGCCCGGATAATT 57.883 45.000 0.73 0.00 0.00 1.40
3324 3603 2.983907 TTGTGACGCCCGGATAATTA 57.016 45.000 0.73 0.00 0.00 1.40
3325 3604 2.983907 TGTGACGCCCGGATAATTAA 57.016 45.000 0.73 0.00 0.00 1.40
3326 3605 2.828877 TGTGACGCCCGGATAATTAAG 58.171 47.619 0.73 0.00 0.00 1.85
3327 3606 1.529865 GTGACGCCCGGATAATTAAGC 59.470 52.381 0.73 0.00 0.00 3.09
3328 3607 1.414919 TGACGCCCGGATAATTAAGCT 59.585 47.619 0.73 0.00 0.00 3.74
3329 3608 2.629137 TGACGCCCGGATAATTAAGCTA 59.371 45.455 0.73 0.00 0.00 3.32
3330 3609 2.991866 GACGCCCGGATAATTAAGCTAC 59.008 50.000 0.73 0.00 0.00 3.58
3331 3610 2.366266 ACGCCCGGATAATTAAGCTACA 59.634 45.455 0.73 0.00 0.00 2.74
3332 3611 2.993899 CGCCCGGATAATTAAGCTACAG 59.006 50.000 0.73 0.00 0.00 2.74
3333 3612 3.554337 CGCCCGGATAATTAAGCTACAGT 60.554 47.826 0.73 0.00 0.00 3.55
3334 3613 4.321452 CGCCCGGATAATTAAGCTACAGTA 60.321 45.833 0.73 0.00 0.00 2.74
3335 3614 5.544650 GCCCGGATAATTAAGCTACAGTAA 58.455 41.667 0.73 0.00 0.00 2.24
3336 3615 6.171213 GCCCGGATAATTAAGCTACAGTAAT 58.829 40.000 0.73 0.00 0.00 1.89
3337 3616 6.313164 GCCCGGATAATTAAGCTACAGTAATC 59.687 42.308 0.73 0.00 0.00 1.75
3338 3617 6.817140 CCCGGATAATTAAGCTACAGTAATCC 59.183 42.308 0.73 0.00 0.00 3.01
3339 3618 6.817140 CCGGATAATTAAGCTACAGTAATCCC 59.183 42.308 0.00 0.00 0.00 3.85
3340 3619 7.383687 CGGATAATTAAGCTACAGTAATCCCA 58.616 38.462 0.00 0.00 0.00 4.37
3341 3620 7.331193 CGGATAATTAAGCTACAGTAATCCCAC 59.669 40.741 0.00 0.00 0.00 4.61
3342 3621 7.331193 GGATAATTAAGCTACAGTAATCCCACG 59.669 40.741 0.00 0.00 0.00 4.94
3343 3622 5.609533 ATTAAGCTACAGTAATCCCACGT 57.390 39.130 0.00 0.00 0.00 4.49
3344 3623 3.975168 AAGCTACAGTAATCCCACGTT 57.025 42.857 0.00 0.00 0.00 3.99
3345 3624 6.528537 TTAAGCTACAGTAATCCCACGTTA 57.471 37.500 0.00 0.00 0.00 3.18
3346 3625 5.410355 AAGCTACAGTAATCCCACGTTAA 57.590 39.130 0.00 0.00 0.00 2.01
3347 3626 4.752146 AGCTACAGTAATCCCACGTTAAC 58.248 43.478 0.00 0.00 0.00 2.01
3348 3627 3.549070 GCTACAGTAATCCCACGTTAACG 59.451 47.826 25.68 25.68 46.33 3.18
3349 3628 3.940209 ACAGTAATCCCACGTTAACGA 57.060 42.857 33.06 12.27 43.02 3.85
3350 3629 4.460948 ACAGTAATCCCACGTTAACGAT 57.539 40.909 33.06 14.09 43.02 3.73
3351 3630 4.178540 ACAGTAATCCCACGTTAACGATG 58.821 43.478 33.06 24.21 43.02 3.84
3352 3631 3.000925 CAGTAATCCCACGTTAACGATGC 59.999 47.826 33.06 14.45 43.02 3.91
3353 3632 1.375551 AATCCCACGTTAACGATGCC 58.624 50.000 33.06 0.00 43.02 4.40
3354 3633 0.250793 ATCCCACGTTAACGATGCCA 59.749 50.000 33.06 15.53 43.02 4.92
3355 3634 0.671163 TCCCACGTTAACGATGCCAC 60.671 55.000 33.06 0.00 43.02 5.01
3356 3635 1.418367 CCACGTTAACGATGCCACG 59.582 57.895 33.06 6.38 43.02 4.94
3357 3636 1.286354 CCACGTTAACGATGCCACGT 61.286 55.000 33.06 7.10 46.45 4.49
3358 3637 0.092351 CACGTTAACGATGCCACGTC 59.908 55.000 33.06 0.00 43.79 4.34
3359 3638 0.318869 ACGTTAACGATGCCACGTCA 60.319 50.000 33.06 0.00 41.97 4.35
3360 3639 0.092351 CGTTAACGATGCCACGTCAC 59.908 55.000 23.35 5.66 45.83 3.67
3361 3640 0.441145 GTTAACGATGCCACGTCACC 59.559 55.000 5.80 0.00 45.83 4.02
3362 3641 0.319083 TTAACGATGCCACGTCACCT 59.681 50.000 5.80 0.00 45.83 4.00
3363 3642 0.108992 TAACGATGCCACGTCACCTC 60.109 55.000 5.80 0.00 45.83 3.85
3364 3643 2.880879 CGATGCCACGTCACCTCG 60.881 66.667 0.00 0.00 0.00 4.63
3365 3644 2.509336 GATGCCACGTCACCTCGG 60.509 66.667 0.00 0.00 34.94 4.63
3366 3645 3.296709 GATGCCACGTCACCTCGGT 62.297 63.158 0.00 0.00 34.94 4.69
3367 3646 2.781595 GATGCCACGTCACCTCGGTT 62.782 60.000 0.00 0.00 34.94 4.44
3368 3647 1.537814 ATGCCACGTCACCTCGGTTA 61.538 55.000 0.00 0.00 34.94 2.85
3369 3648 1.217244 GCCACGTCACCTCGGTTAT 59.783 57.895 0.00 0.00 34.94 1.89
3370 3649 0.390735 GCCACGTCACCTCGGTTATT 60.391 55.000 0.00 0.00 34.94 1.40
3371 3650 1.355971 CCACGTCACCTCGGTTATTG 58.644 55.000 0.00 0.00 34.94 1.90
3372 3651 1.337447 CCACGTCACCTCGGTTATTGT 60.337 52.381 0.00 0.00 34.94 2.71
3373 3652 2.409975 CACGTCACCTCGGTTATTGTT 58.590 47.619 0.00 0.00 34.94 2.83
3374 3653 2.156891 CACGTCACCTCGGTTATTGTTG 59.843 50.000 0.00 0.00 34.94 3.33
3375 3654 1.127951 CGTCACCTCGGTTATTGTTGC 59.872 52.381 0.00 0.00 0.00 4.17
3376 3655 2.423577 GTCACCTCGGTTATTGTTGCT 58.576 47.619 0.00 0.00 0.00 3.91
3377 3656 3.592059 GTCACCTCGGTTATTGTTGCTA 58.408 45.455 0.00 0.00 0.00 3.49
3378 3657 3.998341 GTCACCTCGGTTATTGTTGCTAA 59.002 43.478 0.00 0.00 0.00 3.09
3379 3658 4.634443 GTCACCTCGGTTATTGTTGCTAAT 59.366 41.667 0.00 0.00 0.00 1.73
3380 3659 4.873827 TCACCTCGGTTATTGTTGCTAATC 59.126 41.667 0.00 0.00 0.00 1.75
3381 3660 4.876107 CACCTCGGTTATTGTTGCTAATCT 59.124 41.667 0.00 0.00 0.00 2.40
3382 3661 5.006746 CACCTCGGTTATTGTTGCTAATCTC 59.993 44.000 0.00 0.00 0.00 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 0.379316 AAAGCACGTCGGTTTTGTCC 59.621 50.000 8.64 0.00 42.62 4.02
39 40 4.320870 GTTTCCCCGTGACAATTCTTCTA 58.679 43.478 0.00 0.00 0.00 2.10
40 41 3.146847 GTTTCCCCGTGACAATTCTTCT 58.853 45.455 0.00 0.00 0.00 2.85
100 101 1.810030 GGCCGGCTAGTTCTTGTCG 60.810 63.158 28.56 1.81 0.00 4.35
101 102 0.321298 TTGGCCGGCTAGTTCTTGTC 60.321 55.000 28.56 5.64 0.00 3.18
102 103 0.605589 GTTGGCCGGCTAGTTCTTGT 60.606 55.000 28.56 0.00 0.00 3.16
121 128 0.809636 TGTGTGTGGTCTGTGAAGCG 60.810 55.000 0.00 0.00 0.00 4.68
178 196 5.184711 TCGTTAGGTTAAGTTTTGTGGTGT 58.815 37.500 0.00 0.00 0.00 4.16
179 197 5.277634 CCTCGTTAGGTTAAGTTTTGTGGTG 60.278 44.000 0.00 0.00 38.19 4.17
498 532 1.131883 TCCGTACGTCTAGCAAAGCTC 59.868 52.381 15.21 0.00 40.44 4.09
499 533 1.132643 CTCCGTACGTCTAGCAAAGCT 59.867 52.381 15.21 0.00 43.41 3.74
500 534 1.135460 ACTCCGTACGTCTAGCAAAGC 60.135 52.381 15.21 0.00 0.00 3.51
501 535 2.915738 ACTCCGTACGTCTAGCAAAG 57.084 50.000 15.21 0.00 0.00 2.77
502 536 3.648339 AAACTCCGTACGTCTAGCAAA 57.352 42.857 15.21 0.00 0.00 3.68
503 537 3.648339 AAAACTCCGTACGTCTAGCAA 57.352 42.857 15.21 0.00 0.00 3.91
504 538 3.501828 TGTAAAACTCCGTACGTCTAGCA 59.498 43.478 15.21 0.15 0.00 3.49
505 539 4.083581 TGTAAAACTCCGTACGTCTAGC 57.916 45.455 15.21 0.00 0.00 3.42
506 540 4.393062 TCCTGTAAAACTCCGTACGTCTAG 59.607 45.833 15.21 10.84 0.00 2.43
507 541 4.323417 TCCTGTAAAACTCCGTACGTCTA 58.677 43.478 15.21 0.00 0.00 2.59
508 542 3.149196 TCCTGTAAAACTCCGTACGTCT 58.851 45.455 15.21 0.00 0.00 4.18
509 543 3.496155 CTCCTGTAAAACTCCGTACGTC 58.504 50.000 15.21 0.00 0.00 4.34
510 544 2.229784 CCTCCTGTAAAACTCCGTACGT 59.770 50.000 15.21 0.00 0.00 3.57
511 545 2.229784 ACCTCCTGTAAAACTCCGTACG 59.770 50.000 8.69 8.69 0.00 3.67
512 546 3.949842 ACCTCCTGTAAAACTCCGTAC 57.050 47.619 0.00 0.00 0.00 3.67
513 547 4.961438 AAACCTCCTGTAAAACTCCGTA 57.039 40.909 0.00 0.00 0.00 4.02
514 548 3.851458 AAACCTCCTGTAAAACTCCGT 57.149 42.857 0.00 0.00 0.00 4.69
515 549 4.634199 TGTAAACCTCCTGTAAAACTCCG 58.366 43.478 0.00 0.00 0.00 4.63
516 550 5.001874 CCTGTAAACCTCCTGTAAAACTCC 58.998 45.833 0.00 0.00 0.00 3.85
517 551 5.618236 ACCTGTAAACCTCCTGTAAAACTC 58.382 41.667 0.00 0.00 0.00 3.01
518 552 5.641789 ACCTGTAAACCTCCTGTAAAACT 57.358 39.130 0.00 0.00 0.00 2.66
519 553 5.506815 GCAACCTGTAAACCTCCTGTAAAAC 60.507 44.000 0.00 0.00 0.00 2.43
520 554 4.581409 GCAACCTGTAAACCTCCTGTAAAA 59.419 41.667 0.00 0.00 0.00 1.52
521 555 4.139038 GCAACCTGTAAACCTCCTGTAAA 58.861 43.478 0.00 0.00 0.00 2.01
522 556 3.393278 AGCAACCTGTAAACCTCCTGTAA 59.607 43.478 0.00 0.00 0.00 2.41
523 557 2.976882 AGCAACCTGTAAACCTCCTGTA 59.023 45.455 0.00 0.00 0.00 2.74
524 558 1.774856 AGCAACCTGTAAACCTCCTGT 59.225 47.619 0.00 0.00 0.00 4.00
525 559 2.568623 AGCAACCTGTAAACCTCCTG 57.431 50.000 0.00 0.00 0.00 3.86
526 560 4.717279 TTAAGCAACCTGTAAACCTCCT 57.283 40.909 0.00 0.00 0.00 3.69
527 561 6.093633 CACTATTAAGCAACCTGTAAACCTCC 59.906 42.308 0.00 0.00 0.00 4.30
528 562 6.877322 TCACTATTAAGCAACCTGTAAACCTC 59.123 38.462 0.00 0.00 0.00 3.85
529 563 6.775708 TCACTATTAAGCAACCTGTAAACCT 58.224 36.000 0.00 0.00 0.00 3.50
530 564 7.625828 ATCACTATTAAGCAACCTGTAAACC 57.374 36.000 0.00 0.00 0.00 3.27
531 565 7.968405 CCAATCACTATTAAGCAACCTGTAAAC 59.032 37.037 0.00 0.00 0.00 2.01
532 566 7.362574 GCCAATCACTATTAAGCAACCTGTAAA 60.363 37.037 0.00 0.00 0.00 2.01
533 567 6.094881 GCCAATCACTATTAAGCAACCTGTAA 59.905 38.462 0.00 0.00 0.00 2.41
534 568 5.588648 GCCAATCACTATTAAGCAACCTGTA 59.411 40.000 0.00 0.00 0.00 2.74
535 569 4.399303 GCCAATCACTATTAAGCAACCTGT 59.601 41.667 0.00 0.00 0.00 4.00
536 570 4.202050 GGCCAATCACTATTAAGCAACCTG 60.202 45.833 0.00 0.00 0.00 4.00
537 571 3.954258 GGCCAATCACTATTAAGCAACCT 59.046 43.478 0.00 0.00 0.00 3.50
538 572 3.243068 CGGCCAATCACTATTAAGCAACC 60.243 47.826 2.24 0.00 0.00 3.77
539 573 3.625764 TCGGCCAATCACTATTAAGCAAC 59.374 43.478 2.24 0.00 0.00 4.17
540 574 3.876914 CTCGGCCAATCACTATTAAGCAA 59.123 43.478 2.24 0.00 0.00 3.91
541 575 3.466836 CTCGGCCAATCACTATTAAGCA 58.533 45.455 2.24 0.00 0.00 3.91
542 576 2.808543 CCTCGGCCAATCACTATTAAGC 59.191 50.000 2.24 0.00 0.00 3.09
543 577 4.336889 TCCTCGGCCAATCACTATTAAG 57.663 45.455 2.24 0.00 0.00 1.85
544 578 4.974645 ATCCTCGGCCAATCACTATTAA 57.025 40.909 2.24 0.00 0.00 1.40
545 579 4.346709 TCAATCCTCGGCCAATCACTATTA 59.653 41.667 2.24 0.00 0.00 0.98
546 580 3.136443 TCAATCCTCGGCCAATCACTATT 59.864 43.478 2.24 0.00 0.00 1.73
547 581 2.705658 TCAATCCTCGGCCAATCACTAT 59.294 45.455 2.24 0.00 0.00 2.12
548 582 2.115427 TCAATCCTCGGCCAATCACTA 58.885 47.619 2.24 0.00 0.00 2.74
549 583 0.911769 TCAATCCTCGGCCAATCACT 59.088 50.000 2.24 0.00 0.00 3.41
550 584 1.972872 ATCAATCCTCGGCCAATCAC 58.027 50.000 2.24 0.00 0.00 3.06
551 585 2.734755 AATCAATCCTCGGCCAATCA 57.265 45.000 2.24 0.00 0.00 2.57
552 586 4.389374 TCTTAATCAATCCTCGGCCAATC 58.611 43.478 2.24 0.00 0.00 2.67
553 587 4.437682 TCTTAATCAATCCTCGGCCAAT 57.562 40.909 2.24 0.00 0.00 3.16
554 588 3.924114 TCTTAATCAATCCTCGGCCAA 57.076 42.857 2.24 0.00 0.00 4.52
555 589 3.743521 CATCTTAATCAATCCTCGGCCA 58.256 45.455 2.24 0.00 0.00 5.36
556 590 2.485814 GCATCTTAATCAATCCTCGGCC 59.514 50.000 0.00 0.00 0.00 6.13
557 591 3.058639 GTGCATCTTAATCAATCCTCGGC 60.059 47.826 0.00 0.00 0.00 5.54
558 592 3.185188 CGTGCATCTTAATCAATCCTCGG 59.815 47.826 0.00 0.00 0.00 4.63
559 593 3.185188 CCGTGCATCTTAATCAATCCTCG 59.815 47.826 0.00 0.00 0.00 4.63
560 594 3.499918 CCCGTGCATCTTAATCAATCCTC 59.500 47.826 0.00 0.00 0.00 3.71
561 595 3.480470 CCCGTGCATCTTAATCAATCCT 58.520 45.455 0.00 0.00 0.00 3.24
562 596 2.030805 GCCCGTGCATCTTAATCAATCC 60.031 50.000 0.00 0.00 37.47 3.01
563 597 2.030805 GGCCCGTGCATCTTAATCAATC 60.031 50.000 0.00 0.00 40.13 2.67
564 598 1.956477 GGCCCGTGCATCTTAATCAAT 59.044 47.619 0.00 0.00 40.13 2.57
565 599 1.388547 GGCCCGTGCATCTTAATCAA 58.611 50.000 0.00 0.00 40.13 2.57
566 600 0.465460 GGGCCCGTGCATCTTAATCA 60.465 55.000 5.69 0.00 40.13 2.57
567 601 0.465460 TGGGCCCGTGCATCTTAATC 60.465 55.000 19.37 0.00 40.13 1.75
568 602 0.751643 GTGGGCCCGTGCATCTTAAT 60.752 55.000 19.37 0.00 40.13 1.40
569 603 1.377987 GTGGGCCCGTGCATCTTAA 60.378 57.895 19.37 0.00 40.13 1.85
570 604 2.270850 GTGGGCCCGTGCATCTTA 59.729 61.111 19.37 0.00 40.13 2.10
571 605 4.740822 GGTGGGCCCGTGCATCTT 62.741 66.667 19.37 0.00 40.13 2.40
580 614 2.283604 ATTTTCACCGGTGGGCCC 60.284 61.111 33.40 17.59 36.48 5.80
581 615 1.595093 CTGATTTTCACCGGTGGGCC 61.595 60.000 33.40 18.09 36.48 5.80
582 616 1.595093 CCTGATTTTCACCGGTGGGC 61.595 60.000 33.40 18.06 36.48 5.36
583 617 0.965363 CCCTGATTTTCACCGGTGGG 60.965 60.000 33.40 23.27 40.11 4.61
584 618 0.965363 CCCCTGATTTTCACCGGTGG 60.965 60.000 33.40 15.33 0.00 4.61
585 619 0.965363 CCCCCTGATTTTCACCGGTG 60.965 60.000 29.26 29.26 0.00 4.94
586 620 1.382629 CCCCCTGATTTTCACCGGT 59.617 57.895 0.00 0.00 0.00 5.28
587 621 4.337013 CCCCCTGATTTTCACCGG 57.663 61.111 0.00 0.00 0.00 5.28
603 637 0.819666 CGCTCTTCTAATTGGCCCCC 60.820 60.000 0.00 0.00 0.00 5.40
604 638 0.180406 TCGCTCTTCTAATTGGCCCC 59.820 55.000 0.00 0.00 0.00 5.80
605 639 2.038387 TTCGCTCTTCTAATTGGCCC 57.962 50.000 0.00 0.00 0.00 5.80
606 640 2.291741 CCATTCGCTCTTCTAATTGGCC 59.708 50.000 0.00 0.00 0.00 5.36
607 641 2.945668 ACCATTCGCTCTTCTAATTGGC 59.054 45.455 0.00 0.00 0.00 4.52
608 642 4.446371 AGACCATTCGCTCTTCTAATTGG 58.554 43.478 0.00 0.00 0.00 3.16
609 643 6.428385 AAAGACCATTCGCTCTTCTAATTG 57.572 37.500 0.00 0.00 0.00 2.32
610 644 7.975750 GTTAAAGACCATTCGCTCTTCTAATT 58.024 34.615 0.00 0.00 0.00 1.40
611 645 7.541122 GTTAAAGACCATTCGCTCTTCTAAT 57.459 36.000 0.00 0.00 0.00 1.73
612 646 6.963049 GTTAAAGACCATTCGCTCTTCTAA 57.037 37.500 0.00 0.00 0.00 2.10
627 661 8.667076 TCTACAGGTTTTTACAGGTTAAAGAC 57.333 34.615 0.00 0.00 0.00 3.01
628 662 9.856162 ATTCTACAGGTTTTTACAGGTTAAAGA 57.144 29.630 0.00 0.00 0.00 2.52
629 663 9.893305 CATTCTACAGGTTTTTACAGGTTAAAG 57.107 33.333 0.00 0.00 0.00 1.85
630 664 9.629878 TCATTCTACAGGTTTTTACAGGTTAAA 57.370 29.630 0.00 0.00 0.00 1.52
631 665 9.280174 CTCATTCTACAGGTTTTTACAGGTTAA 57.720 33.333 0.00 0.00 0.00 2.01
632 666 7.389607 GCTCATTCTACAGGTTTTTACAGGTTA 59.610 37.037 0.00 0.00 0.00 2.85
633 667 6.206829 GCTCATTCTACAGGTTTTTACAGGTT 59.793 38.462 0.00 0.00 0.00 3.50
634 668 5.705905 GCTCATTCTACAGGTTTTTACAGGT 59.294 40.000 0.00 0.00 0.00 4.00
635 669 5.123979 GGCTCATTCTACAGGTTTTTACAGG 59.876 44.000 0.00 0.00 0.00 4.00
636 670 5.940470 AGGCTCATTCTACAGGTTTTTACAG 59.060 40.000 0.00 0.00 0.00 2.74
637 671 5.705441 CAGGCTCATTCTACAGGTTTTTACA 59.295 40.000 0.00 0.00 0.00 2.41
638 672 5.705905 ACAGGCTCATTCTACAGGTTTTTAC 59.294 40.000 0.00 0.00 0.00 2.01
639 673 5.876357 ACAGGCTCATTCTACAGGTTTTTA 58.124 37.500 0.00 0.00 0.00 1.52
640 674 4.729868 ACAGGCTCATTCTACAGGTTTTT 58.270 39.130 0.00 0.00 0.00 1.94
641 675 4.373156 ACAGGCTCATTCTACAGGTTTT 57.627 40.909 0.00 0.00 0.00 2.43
642 676 4.620803 CGTACAGGCTCATTCTACAGGTTT 60.621 45.833 0.00 0.00 0.00 3.27
643 677 3.119101 CGTACAGGCTCATTCTACAGGTT 60.119 47.826 0.00 0.00 0.00 3.50
644 678 2.427453 CGTACAGGCTCATTCTACAGGT 59.573 50.000 0.00 0.00 0.00 4.00
645 679 2.427453 ACGTACAGGCTCATTCTACAGG 59.573 50.000 0.00 0.00 0.00 4.00
646 680 3.119459 ACACGTACAGGCTCATTCTACAG 60.119 47.826 0.00 0.00 0.00 2.74
647 681 2.823747 ACACGTACAGGCTCATTCTACA 59.176 45.455 0.00 0.00 0.00 2.74
648 682 3.505464 ACACGTACAGGCTCATTCTAC 57.495 47.619 0.00 0.00 0.00 2.59
649 683 3.066342 GCTACACGTACAGGCTCATTCTA 59.934 47.826 0.00 0.00 0.00 2.10
650 684 2.159226 GCTACACGTACAGGCTCATTCT 60.159 50.000 0.00 0.00 0.00 2.40
651 685 2.194271 GCTACACGTACAGGCTCATTC 58.806 52.381 0.00 0.00 0.00 2.67
652 686 1.548719 TGCTACACGTACAGGCTCATT 59.451 47.619 0.00 0.00 0.00 2.57
653 687 1.182667 TGCTACACGTACAGGCTCAT 58.817 50.000 0.00 0.00 0.00 2.90
654 688 1.182667 ATGCTACACGTACAGGCTCA 58.817 50.000 0.00 0.00 0.00 4.26
655 689 2.295253 AATGCTACACGTACAGGCTC 57.705 50.000 0.00 0.00 0.00 4.70
656 690 2.762535 AAATGCTACACGTACAGGCT 57.237 45.000 0.00 0.00 0.00 4.58
657 691 3.488489 CAAAAATGCTACACGTACAGGC 58.512 45.455 0.00 0.00 0.00 4.85
658 692 3.488489 GCAAAAATGCTACACGTACAGG 58.512 45.455 0.00 0.00 0.00 4.00
659 693 3.488489 GGCAAAAATGCTACACGTACAG 58.512 45.455 0.40 0.00 34.73 2.74
660 694 2.096169 CGGCAAAAATGCTACACGTACA 60.096 45.455 0.40 0.00 34.73 2.90
661 695 2.158058 TCGGCAAAAATGCTACACGTAC 59.842 45.455 0.40 0.00 34.73 3.67
662 696 2.414806 TCGGCAAAAATGCTACACGTA 58.585 42.857 0.40 0.00 34.73 3.57
663 697 1.231221 TCGGCAAAAATGCTACACGT 58.769 45.000 0.40 0.00 34.73 4.49
664 698 2.440501 GATCGGCAAAAATGCTACACG 58.559 47.619 0.40 0.00 34.73 4.49
665 699 2.440501 CGATCGGCAAAAATGCTACAC 58.559 47.619 7.38 0.00 34.73 2.90
666 700 1.202132 GCGATCGGCAAAAATGCTACA 60.202 47.619 18.30 0.00 42.87 2.74
667 701 1.466855 GCGATCGGCAAAAATGCTAC 58.533 50.000 18.30 0.00 42.87 3.58
668 702 0.027455 CGCGATCGGCAAAAATGCTA 59.973 50.000 18.30 0.00 43.84 3.49
669 703 1.226379 CGCGATCGGCAAAAATGCT 60.226 52.632 18.30 0.00 43.84 3.79
670 704 1.514014 ACGCGATCGGCAAAAATGC 60.514 52.632 15.93 0.00 43.84 3.56
671 705 1.732474 GCACGCGATCGGCAAAAATG 61.732 55.000 15.93 0.00 43.84 2.32
672 706 1.514014 GCACGCGATCGGCAAAAAT 60.514 52.632 15.93 0.00 43.84 1.82
673 707 2.127042 GCACGCGATCGGCAAAAA 60.127 55.556 15.93 0.00 43.84 1.94
674 708 4.437959 CGCACGCGATCGGCAAAA 62.438 61.111 15.93 0.00 43.84 2.44
743 791 1.152963 AGTTTTGTCGGTGCCAGCT 60.153 52.632 0.00 0.00 0.00 4.24
962 1090 6.156519 CCAAGAGTTGTTTGTTTTATAGGCC 58.843 40.000 0.00 0.00 0.00 5.19
1061 1223 2.334838 CTAGCGTAACCACAACTCCAC 58.665 52.381 0.00 0.00 0.00 4.02
1062 1224 1.337447 GCTAGCGTAACCACAACTCCA 60.337 52.381 0.00 0.00 0.00 3.86
1063 1225 1.067071 AGCTAGCGTAACCACAACTCC 60.067 52.381 9.55 0.00 0.00 3.85
1064 1226 2.365408 AGCTAGCGTAACCACAACTC 57.635 50.000 9.55 0.00 0.00 3.01
1065 1227 2.824341 AGTAGCTAGCGTAACCACAACT 59.176 45.455 9.55 0.64 0.00 3.16
1067 1229 2.165030 GGAGTAGCTAGCGTAACCACAA 59.835 50.000 9.55 0.00 0.00 3.33
1068 1230 1.747355 GGAGTAGCTAGCGTAACCACA 59.253 52.381 9.55 0.00 0.00 4.17
1069 1231 1.268437 CGGAGTAGCTAGCGTAACCAC 60.268 57.143 9.55 6.61 0.00 4.16
1072 1234 0.317687 GCCGGAGTAGCTAGCGTAAC 60.318 60.000 5.05 9.31 0.00 2.50
1073 1235 0.465097 AGCCGGAGTAGCTAGCGTAA 60.465 55.000 5.05 0.00 39.29 3.18
1074 1236 1.147824 AGCCGGAGTAGCTAGCGTA 59.852 57.895 5.05 0.00 39.29 4.42
1075 1237 2.124236 AGCCGGAGTAGCTAGCGT 60.124 61.111 5.05 0.00 39.29 5.07
1076 1238 2.333225 CAGCCGGAGTAGCTAGCG 59.667 66.667 5.05 0.00 38.95 4.26
1077 1239 1.360911 GACAGCCGGAGTAGCTAGC 59.639 63.158 5.05 6.62 38.95 3.42
1078 1240 0.814410 TCGACAGCCGGAGTAGCTAG 60.814 60.000 5.05 0.00 38.95 3.42
1080 1242 2.045242 TCGACAGCCGGAGTAGCT 60.045 61.111 5.05 0.00 42.70 3.32
1082 1244 2.799371 GGTCGACAGCCGGAGTAG 59.201 66.667 18.91 3.05 39.14 2.57
1083 1245 3.129502 CGGTCGACAGCCGGAGTA 61.130 66.667 18.91 0.00 44.98 2.59
1090 1252 3.119096 GGCCTTTCGGTCGACAGC 61.119 66.667 18.91 9.35 0.00 4.40
1092 1254 2.342279 CTGGCCTTTCGGTCGACA 59.658 61.111 18.91 0.00 37.90 4.35
1099 1261 0.602562 TGCATTTTCCTGGCCTTTCG 59.397 50.000 3.32 0.00 0.00 3.46
1101 1270 1.620323 GTCTGCATTTTCCTGGCCTTT 59.380 47.619 3.32 0.00 0.00 3.11
1102 1271 1.260544 GTCTGCATTTTCCTGGCCTT 58.739 50.000 3.32 0.00 0.00 4.35
1118 1294 2.603776 GGTCCTCCACGGTGGTCT 60.604 66.667 25.53 0.00 39.03 3.85
1415 1603 3.586961 CGGCGGAGATGAGCTCGA 61.587 66.667 9.64 0.00 44.91 4.04
1911 2135 1.617839 CCTCCCCCTCTTGCTCCTT 60.618 63.158 0.00 0.00 0.00 3.36
2156 2420 2.468532 AGAGCAAAAACGTTTGTCCG 57.531 45.000 15.46 4.69 45.06 4.79
2280 2544 7.503902 AGCCCCTGATTGAATAGAAGAATAAAC 59.496 37.037 0.00 0.00 0.00 2.01
2281 2545 7.503566 CAGCCCCTGATTGAATAGAAGAATAAA 59.496 37.037 0.00 0.00 32.44 1.40
2295 2560 5.888161 GGTATAAATATCCAGCCCCTGATTG 59.112 44.000 0.00 0.00 32.44 2.67
2302 2567 4.222145 TCACGAGGTATAAATATCCAGCCC 59.778 45.833 0.00 0.00 0.00 5.19
2315 2580 5.518847 CGATTGTACATGTTTCACGAGGTAT 59.481 40.000 2.30 0.00 0.00 2.73
2413 2678 6.026947 AGTGCTAGTAGACAATTCTTCGTT 57.973 37.500 0.00 0.00 32.75 3.85
2437 2702 4.637276 TGTCGGCTCTCAAAAGTGAATTA 58.363 39.130 0.00 0.00 31.88 1.40
2456 2722 8.247562 ACTCTTCTAGTCATTCAACTACATGTC 58.752 37.037 0.00 0.00 30.33 3.06
2458 2724 7.490725 CCACTCTTCTAGTCATTCAACTACATG 59.509 40.741 0.00 0.00 35.76 3.21
2516 2782 6.479006 TGAAGTTTGATCTCTGATGGACATT 58.521 36.000 0.00 0.00 0.00 2.71
2593 2859 4.517075 TGCACCTAATCATCGACAAAAACA 59.483 37.500 0.00 0.00 0.00 2.83
2670 2944 7.414540 GGTCCTATGAAATTCACTACAAGCAAG 60.415 40.741 0.00 0.00 0.00 4.01
2677 2951 6.539103 GGTTGAGGTCCTATGAAATTCACTAC 59.461 42.308 0.00 0.00 0.00 2.73
2775 3049 4.838904 ACACCTATAGTTTGGGGTCTTC 57.161 45.455 0.00 0.00 34.35 2.87
2872 3147 6.256053 ACCAACTTGAGGGATCATTGTTATT 58.744 36.000 0.00 0.00 0.00 1.40
2898 3173 9.638176 AAGCAATCTAGTAGAATCATTTTGGAT 57.362 29.630 3.45 0.00 0.00 3.41
3024 3300 7.806409 ATATTCCGATGAACATTGTGATTGA 57.194 32.000 0.00 0.00 32.13 2.57
3101 3377 5.747197 ACATAGTTTCGCTAAATACACTCCG 59.253 40.000 0.00 0.00 32.72 4.63
3138 3414 6.332735 TGTTCCGTGATATAGGAGAGATTG 57.667 41.667 0.00 0.00 37.88 2.67
3153 3429 7.387945 GTGTTGTCTTTTTAAATTGTTCCGTG 58.612 34.615 0.00 0.00 0.00 4.94
3155 3431 6.291374 CGGTGTTGTCTTTTTAAATTGTTCCG 60.291 38.462 0.00 0.00 0.00 4.30
3195 3474 1.131126 CTTTGCATGACACCATCGTCC 59.869 52.381 0.00 0.00 34.88 4.79
3203 3482 2.063266 CATTGGTGCTTTGCATGACAC 58.937 47.619 0.00 5.24 41.91 3.67
3225 3504 4.512944 ACTGCAATAAGATTATGTCTGCCG 59.487 41.667 5.66 3.00 37.23 5.69
3306 3585 2.828877 CTTAATTATCCGGGCGTCACA 58.171 47.619 0.00 0.00 0.00 3.58
3307 3586 1.529865 GCTTAATTATCCGGGCGTCAC 59.470 52.381 0.00 0.00 0.00 3.67
3308 3587 1.414919 AGCTTAATTATCCGGGCGTCA 59.585 47.619 0.00 0.00 0.00 4.35
3309 3588 2.165319 AGCTTAATTATCCGGGCGTC 57.835 50.000 0.00 0.00 0.00 5.19
3310 3589 2.366266 TGTAGCTTAATTATCCGGGCGT 59.634 45.455 0.00 0.00 0.00 5.68
3311 3590 2.993899 CTGTAGCTTAATTATCCGGGCG 59.006 50.000 0.00 0.00 0.00 6.13
3312 3591 4.004196 ACTGTAGCTTAATTATCCGGGC 57.996 45.455 0.00 0.00 0.00 6.13
3313 3592 6.817140 GGATTACTGTAGCTTAATTATCCGGG 59.183 42.308 0.00 0.00 0.00 5.73
3314 3593 6.817140 GGGATTACTGTAGCTTAATTATCCGG 59.183 42.308 0.00 0.00 31.87 5.14
3315 3594 7.331193 GTGGGATTACTGTAGCTTAATTATCCG 59.669 40.741 0.00 0.00 31.87 4.18
3316 3595 7.331193 CGTGGGATTACTGTAGCTTAATTATCC 59.669 40.741 0.00 0.00 0.00 2.59
3317 3596 7.871463 ACGTGGGATTACTGTAGCTTAATTATC 59.129 37.037 0.00 0.00 0.00 1.75
3318 3597 7.732996 ACGTGGGATTACTGTAGCTTAATTAT 58.267 34.615 0.00 0.00 0.00 1.28
3319 3598 7.116075 ACGTGGGATTACTGTAGCTTAATTA 57.884 36.000 0.00 0.00 0.00 1.40
3320 3599 5.985911 ACGTGGGATTACTGTAGCTTAATT 58.014 37.500 0.00 0.00 0.00 1.40
3321 3600 5.609533 ACGTGGGATTACTGTAGCTTAAT 57.390 39.130 0.00 0.00 0.00 1.40
3322 3601 5.410355 AACGTGGGATTACTGTAGCTTAA 57.590 39.130 0.00 0.00 0.00 1.85
3323 3602 6.332630 GTTAACGTGGGATTACTGTAGCTTA 58.667 40.000 0.00 0.00 0.00 3.09
3324 3603 3.975168 AACGTGGGATTACTGTAGCTT 57.025 42.857 0.00 0.00 0.00 3.74
3325 3604 4.676196 CGTTAACGTGGGATTACTGTAGCT 60.676 45.833 19.75 0.00 34.11 3.32
3326 3605 3.549070 CGTTAACGTGGGATTACTGTAGC 59.451 47.826 19.75 0.00 34.11 3.58
3327 3606 4.985413 TCGTTAACGTGGGATTACTGTAG 58.015 43.478 25.98 0.00 40.80 2.74
3328 3607 5.342433 CATCGTTAACGTGGGATTACTGTA 58.658 41.667 25.98 3.87 40.80 2.74
3329 3608 3.940209 TCGTTAACGTGGGATTACTGT 57.060 42.857 25.98 0.00 40.80 3.55
3330 3609 3.000925 GCATCGTTAACGTGGGATTACTG 59.999 47.826 25.98 11.92 40.80 2.74
3331 3610 3.192466 GCATCGTTAACGTGGGATTACT 58.808 45.455 25.98 0.57 40.80 2.24
3332 3611 2.286025 GGCATCGTTAACGTGGGATTAC 59.714 50.000 25.98 7.95 40.80 1.89
3333 3612 2.093606 TGGCATCGTTAACGTGGGATTA 60.094 45.455 25.98 6.82 40.80 1.75
3334 3613 1.339247 TGGCATCGTTAACGTGGGATT 60.339 47.619 25.98 4.55 40.80 3.01
3335 3614 0.250793 TGGCATCGTTAACGTGGGAT 59.749 50.000 25.98 10.69 40.80 3.85
3336 3615 0.671163 GTGGCATCGTTAACGTGGGA 60.671 55.000 25.98 8.70 40.80 4.37
3337 3616 1.791662 GTGGCATCGTTAACGTGGG 59.208 57.895 25.98 17.27 40.80 4.61
3338 3617 1.286354 ACGTGGCATCGTTAACGTGG 61.286 55.000 25.98 19.51 46.58 4.94
3339 3618 2.146954 ACGTGGCATCGTTAACGTG 58.853 52.632 25.98 22.24 46.58 4.49
3340 3619 4.659480 ACGTGGCATCGTTAACGT 57.341 50.000 25.98 11.94 43.87 3.99
3341 3620 0.092351 GTGACGTGGCATCGTTAACG 59.908 55.000 21.85 21.85 44.21 3.18
3342 3621 0.441145 GGTGACGTGGCATCGTTAAC 59.559 55.000 14.43 14.56 44.21 2.01
3343 3622 0.319083 AGGTGACGTGGCATCGTTAA 59.681 50.000 14.43 5.94 44.21 2.01
3344 3623 0.108992 GAGGTGACGTGGCATCGTTA 60.109 55.000 14.43 9.12 44.21 3.18
3345 3624 1.374252 GAGGTGACGTGGCATCGTT 60.374 57.895 14.43 1.55 44.21 3.85
3346 3625 2.261671 GAGGTGACGTGGCATCGT 59.738 61.111 13.44 13.44 46.88 3.73
3347 3626 2.880879 CGAGGTGACGTGGCATCG 60.881 66.667 0.00 0.00 32.86 3.84
3348 3627 2.509336 CCGAGGTGACGTGGCATC 60.509 66.667 0.00 0.00 0.00 3.91
3349 3628 1.537814 TAACCGAGGTGACGTGGCAT 61.538 55.000 0.00 0.00 33.35 4.40
3350 3629 1.537814 ATAACCGAGGTGACGTGGCA 61.538 55.000 0.00 0.00 33.35 4.92
3351 3630 0.390735 AATAACCGAGGTGACGTGGC 60.391 55.000 0.00 0.00 33.35 5.01
3352 3631 1.337447 ACAATAACCGAGGTGACGTGG 60.337 52.381 0.00 0.00 35.83 4.94
3353 3632 2.074547 ACAATAACCGAGGTGACGTG 57.925 50.000 0.00 0.00 0.00 4.49
3354 3633 2.409975 CAACAATAACCGAGGTGACGT 58.590 47.619 0.00 0.00 0.00 4.34
3355 3634 1.127951 GCAACAATAACCGAGGTGACG 59.872 52.381 0.00 0.00 0.00 4.35
3356 3635 2.423577 AGCAACAATAACCGAGGTGAC 58.576 47.619 0.00 0.00 0.00 3.67
3357 3636 2.851263 AGCAACAATAACCGAGGTGA 57.149 45.000 0.00 0.00 0.00 4.02
3358 3637 4.876107 AGATTAGCAACAATAACCGAGGTG 59.124 41.667 0.00 0.00 0.00 4.00
3359 3638 5.099042 AGATTAGCAACAATAACCGAGGT 57.901 39.130 0.00 0.00 0.00 3.85
3360 3639 5.659048 GAGATTAGCAACAATAACCGAGG 57.341 43.478 0.00 0.00 0.00 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.