Multiple sequence alignment - TraesCS3D01G380400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G380400 chr3D 100.000 3476 0 0 1 3476 496749637 496746162 0.000000e+00 6420
1 TraesCS3D01G380400 chr3D 97.447 470 12 0 1 470 496757903 496757434 0.000000e+00 802
2 TraesCS3D01G380400 chr3D 96.391 471 15 2 1 470 604325345 604324876 0.000000e+00 774
3 TraesCS3D01G380400 chr3B 93.571 2971 127 27 530 3476 655863627 655860697 0.000000e+00 4370
4 TraesCS3D01G380400 chr3A 93.728 2838 110 28 659 3476 638058244 638061033 0.000000e+00 4193
5 TraesCS3D01G380400 chr3A 94.872 78 2 2 582 659 637828561 637828486 1.690000e-23 121
6 TraesCS3D01G380400 chr2D 96.603 471 14 2 1 470 598908153 598908622 0.000000e+00 780
7 TraesCS3D01G380400 chr2D 96.186 472 14 3 1 470 386684990 386685459 0.000000e+00 769
8 TraesCS3D01G380400 chr7D 96.581 468 14 2 1 467 204738982 204738516 0.000000e+00 774
9 TraesCS3D01G380400 chr4D 96.383 470 16 1 1 470 40278525 40278057 0.000000e+00 773
10 TraesCS3D01G380400 chr5D 96.574 467 13 3 1 466 42521422 42520958 0.000000e+00 771
11 TraesCS3D01G380400 chr5D 96.178 471 16 2 1 470 342637151 342636682 0.000000e+00 769
12 TraesCS3D01G380400 chr1D 96.178 471 16 2 1 470 378198974 378199443 0.000000e+00 769


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G380400 chr3D 496746162 496749637 3475 True 6420 6420 100.000 1 3476 1 chr3D.!!$R1 3475
1 TraesCS3D01G380400 chr3B 655860697 655863627 2930 True 4370 4370 93.571 530 3476 1 chr3B.!!$R1 2946
2 TraesCS3D01G380400 chr3A 638058244 638061033 2789 False 4193 4193 93.728 659 3476 1 chr3A.!!$F1 2817

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
34 35 0.033991 GCTTTCTCCCTCTTTCCCCC 60.034 60.0 0.0 0.0 0.0 5.40 F
1494 1507 0.029267 AGGCAGGGAAGGAGGATGAT 60.029 55.0 0.0 0.0 0.0 2.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1905 1918 0.343372 AGCTGGAGGAATCAGGGGTA 59.657 55.0 0.0 0.0 33.16 3.69 R
2888 2921 0.110486 GGGGAAGGTCAGCAAACAGA 59.890 55.0 0.0 0.0 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.902705 TGAGTACTCACGGTTGCTTT 57.097 45.000 21.74 0.00 34.14 3.51
20 21 2.750948 TGAGTACTCACGGTTGCTTTC 58.249 47.619 21.74 0.00 34.14 2.62
21 22 2.364324 TGAGTACTCACGGTTGCTTTCT 59.636 45.455 21.74 0.00 34.14 2.52
22 23 2.987821 GAGTACTCACGGTTGCTTTCTC 59.012 50.000 18.20 0.00 0.00 2.87
23 24 2.067013 GTACTCACGGTTGCTTTCTCC 58.933 52.381 0.00 0.00 0.00 3.71
24 25 0.250338 ACTCACGGTTGCTTTCTCCC 60.250 55.000 0.00 0.00 0.00 4.30
25 26 0.035458 CTCACGGTTGCTTTCTCCCT 59.965 55.000 0.00 0.00 0.00 4.20
26 27 0.034896 TCACGGTTGCTTTCTCCCTC 59.965 55.000 0.00 0.00 0.00 4.30
27 28 0.035458 CACGGTTGCTTTCTCCCTCT 59.965 55.000 0.00 0.00 0.00 3.69
28 29 0.765510 ACGGTTGCTTTCTCCCTCTT 59.234 50.000 0.00 0.00 0.00 2.85
29 30 1.143073 ACGGTTGCTTTCTCCCTCTTT 59.857 47.619 0.00 0.00 0.00 2.52
30 31 1.807142 CGGTTGCTTTCTCCCTCTTTC 59.193 52.381 0.00 0.00 0.00 2.62
31 32 2.163509 GGTTGCTTTCTCCCTCTTTCC 58.836 52.381 0.00 0.00 0.00 3.13
32 33 2.163509 GTTGCTTTCTCCCTCTTTCCC 58.836 52.381 0.00 0.00 0.00 3.97
33 34 0.698818 TGCTTTCTCCCTCTTTCCCC 59.301 55.000 0.00 0.00 0.00 4.81
34 35 0.033991 GCTTTCTCCCTCTTTCCCCC 60.034 60.000 0.00 0.00 0.00 5.40
50 51 3.359669 CCCCCTTTCCATCCTACCT 57.640 57.895 0.00 0.00 0.00 3.08
51 52 0.846693 CCCCCTTTCCATCCTACCTG 59.153 60.000 0.00 0.00 0.00 4.00
52 53 0.846693 CCCCTTTCCATCCTACCTGG 59.153 60.000 0.00 0.00 34.93 4.45
53 54 1.596496 CCCTTTCCATCCTACCTGGT 58.404 55.000 4.05 4.05 35.19 4.00
54 55 1.923148 CCCTTTCCATCCTACCTGGTT 59.077 52.381 3.84 0.00 35.19 3.67
55 56 2.357154 CCCTTTCCATCCTACCTGGTTG 60.357 54.545 3.84 2.21 35.19 3.77
56 57 2.308866 CCTTTCCATCCTACCTGGTTGT 59.691 50.000 3.84 0.00 34.51 3.32
57 58 3.610911 CTTTCCATCCTACCTGGTTGTC 58.389 50.000 3.84 0.00 34.51 3.18
58 59 1.191535 TCCATCCTACCTGGTTGTCG 58.808 55.000 3.84 0.00 34.51 4.35
59 60 0.462047 CCATCCTACCTGGTTGTCGC 60.462 60.000 3.84 0.00 34.51 5.19
60 61 0.249120 CATCCTACCTGGTTGTCGCA 59.751 55.000 3.84 0.00 37.07 5.10
61 62 0.981183 ATCCTACCTGGTTGTCGCAA 59.019 50.000 3.84 0.00 37.07 4.85
62 63 0.034337 TCCTACCTGGTTGTCGCAAC 59.966 55.000 3.84 12.44 37.07 4.17
63 64 0.953960 CCTACCTGGTTGTCGCAACC 60.954 60.000 25.46 25.46 40.67 3.77
68 69 2.627791 TGGTTGTCGCAACCAGATG 58.372 52.632 28.84 0.00 44.74 2.90
69 70 0.179032 TGGTTGTCGCAACCAGATGT 60.179 50.000 28.84 0.00 44.74 3.06
70 71 0.951558 GGTTGTCGCAACCAGATGTT 59.048 50.000 26.54 0.00 40.03 2.71
80 81 4.651867 CAGATGTTGGAGCCCAGG 57.348 61.111 0.00 0.00 33.81 4.45
81 82 1.993653 CAGATGTTGGAGCCCAGGA 59.006 57.895 0.00 0.00 33.81 3.86
82 83 0.107312 CAGATGTTGGAGCCCAGGAG 60.107 60.000 0.00 0.00 33.81 3.69
83 84 1.452833 GATGTTGGAGCCCAGGAGC 60.453 63.158 0.00 0.00 33.81 4.70
84 85 2.900671 GATGTTGGAGCCCAGGAGCC 62.901 65.000 0.00 0.00 33.81 4.70
85 86 3.650950 GTTGGAGCCCAGGAGCCA 61.651 66.667 0.00 0.00 33.81 4.75
86 87 3.333219 TTGGAGCCCAGGAGCCAG 61.333 66.667 0.00 0.00 33.81 4.85
87 88 3.870607 TTGGAGCCCAGGAGCCAGA 62.871 63.158 0.00 0.00 33.81 3.86
88 89 3.791586 GGAGCCCAGGAGCCAGAC 61.792 72.222 0.00 0.00 0.00 3.51
89 90 4.154347 GAGCCCAGGAGCCAGACG 62.154 72.222 0.00 0.00 0.00 4.18
93 94 4.767255 CCAGGAGCCAGACGCCAC 62.767 72.222 0.00 0.00 41.55 5.01
94 95 4.767255 CAGGAGCCAGACGCCACC 62.767 72.222 0.00 0.00 41.55 4.61
105 106 4.986587 CGCCACCGTCGACGACAA 62.987 66.667 37.65 0.00 43.02 3.18
106 107 3.400590 GCCACCGTCGACGACAAC 61.401 66.667 37.65 20.36 43.02 3.32
107 108 2.333938 CCACCGTCGACGACAACT 59.666 61.111 37.65 12.30 43.02 3.16
108 109 1.728426 CCACCGTCGACGACAACTC 60.728 63.158 37.65 0.45 43.02 3.01
109 110 1.728426 CACCGTCGACGACAACTCC 60.728 63.158 37.65 0.00 43.02 3.85
110 111 1.895707 ACCGTCGACGACAACTCCT 60.896 57.895 37.65 7.43 43.02 3.69
111 112 0.603707 ACCGTCGACGACAACTCCTA 60.604 55.000 37.65 0.00 43.02 2.94
112 113 0.179205 CCGTCGACGACAACTCCTAC 60.179 60.000 37.65 0.00 43.02 3.18
113 114 0.795085 CGTCGACGACAACTCCTACT 59.205 55.000 33.35 0.00 43.02 2.57
114 115 1.995484 CGTCGACGACAACTCCTACTA 59.005 52.381 33.35 0.00 43.02 1.82
115 116 2.222685 CGTCGACGACAACTCCTACTAC 60.223 54.545 33.35 0.00 43.02 2.73
116 117 2.738846 GTCGACGACAACTCCTACTACA 59.261 50.000 22.66 0.00 32.09 2.74
117 118 2.738846 TCGACGACAACTCCTACTACAC 59.261 50.000 0.00 0.00 0.00 2.90
118 119 2.159599 CGACGACAACTCCTACTACACC 60.160 54.545 0.00 0.00 0.00 4.16
119 120 1.808945 ACGACAACTCCTACTACACCG 59.191 52.381 0.00 0.00 0.00 4.94
120 121 1.131883 CGACAACTCCTACTACACCGG 59.868 57.143 0.00 0.00 0.00 5.28
121 122 2.440409 GACAACTCCTACTACACCGGA 58.560 52.381 9.46 0.00 0.00 5.14
137 138 0.942962 CGGAGGTGCCTACTACTACG 59.057 60.000 0.00 0.00 0.00 3.51
138 139 1.745141 CGGAGGTGCCTACTACTACGT 60.745 57.143 0.00 0.00 0.00 3.57
139 140 1.674962 GGAGGTGCCTACTACTACGTG 59.325 57.143 0.00 0.00 0.00 4.49
140 141 1.065251 GAGGTGCCTACTACTACGTGC 59.935 57.143 0.00 0.00 0.00 5.34
141 142 0.813184 GGTGCCTACTACTACGTGCA 59.187 55.000 0.00 0.00 0.00 4.57
142 143 1.202268 GGTGCCTACTACTACGTGCAG 60.202 57.143 0.00 0.00 0.00 4.41
143 144 1.100510 TGCCTACTACTACGTGCAGG 58.899 55.000 4.53 4.53 0.00 4.85
144 145 0.248949 GCCTACTACTACGTGCAGGC 60.249 60.000 6.26 0.00 41.57 4.85
145 146 1.390565 CCTACTACTACGTGCAGGCT 58.609 55.000 6.26 0.00 0.00 4.58
146 147 1.065701 CCTACTACTACGTGCAGGCTG 59.934 57.143 10.94 10.94 0.00 4.85
147 148 0.454600 TACTACTACGTGCAGGCTGC 59.545 55.000 31.91 31.91 45.29 5.25
148 149 1.251527 ACTACTACGTGCAGGCTGCT 61.252 55.000 36.50 21.49 45.31 4.24
149 150 0.803768 CTACTACGTGCAGGCTGCTG 60.804 60.000 36.50 29.80 45.31 4.41
150 151 1.248101 TACTACGTGCAGGCTGCTGA 61.248 55.000 36.50 18.07 45.31 4.26
151 152 2.048222 TACGTGCAGGCTGCTGAC 60.048 61.111 36.50 26.63 45.31 3.51
152 153 3.914605 TACGTGCAGGCTGCTGACG 62.915 63.158 35.87 35.87 45.31 4.35
154 155 3.418068 GTGCAGGCTGCTGACGAC 61.418 66.667 36.50 23.61 45.31 4.34
156 157 4.724602 GCAGGCTGCTGACGACGA 62.725 66.667 31.37 0.00 40.96 4.20
157 158 2.807045 CAGGCTGCTGACGACGAC 60.807 66.667 0.00 0.00 0.00 4.34
158 159 4.057428 AGGCTGCTGACGACGACC 62.057 66.667 0.00 0.00 0.00 4.79
159 160 4.357947 GGCTGCTGACGACGACCA 62.358 66.667 0.00 0.00 0.00 4.02
160 161 2.807045 GCTGCTGACGACGACCAG 60.807 66.667 0.00 9.62 0.00 4.00
161 162 2.126307 CTGCTGACGACGACCAGG 60.126 66.667 18.28 0.00 0.00 4.45
162 163 2.596338 TGCTGACGACGACCAGGA 60.596 61.111 18.28 14.72 0.00 3.86
163 164 2.179517 GCTGACGACGACCAGGAG 59.820 66.667 18.28 2.21 0.00 3.69
164 165 2.627737 GCTGACGACGACCAGGAGT 61.628 63.158 18.28 0.00 0.00 3.85
165 166 1.303799 GCTGACGACGACCAGGAGTA 61.304 60.000 18.28 0.00 0.00 2.59
166 167 0.727970 CTGACGACGACCAGGAGTAG 59.272 60.000 0.00 0.00 0.00 2.57
167 168 0.035881 TGACGACGACCAGGAGTAGT 59.964 55.000 0.00 0.00 36.98 2.73
168 169 1.163554 GACGACGACCAGGAGTAGTT 58.836 55.000 0.00 0.00 34.05 2.24
169 170 1.538950 GACGACGACCAGGAGTAGTTT 59.461 52.381 0.00 0.00 34.05 2.66
170 171 2.744202 GACGACGACCAGGAGTAGTTTA 59.256 50.000 0.00 0.00 34.05 2.01
171 172 2.746362 ACGACGACCAGGAGTAGTTTAG 59.254 50.000 0.00 0.00 34.05 1.85
172 173 2.097142 CGACGACCAGGAGTAGTTTAGG 59.903 54.545 0.00 0.00 34.05 2.69
173 174 3.350833 GACGACCAGGAGTAGTTTAGGA 58.649 50.000 0.00 0.00 34.05 2.94
174 175 3.354467 ACGACCAGGAGTAGTTTAGGAG 58.646 50.000 0.00 0.00 28.71 3.69
175 176 2.688958 CGACCAGGAGTAGTTTAGGAGG 59.311 54.545 0.00 0.00 0.00 4.30
176 177 3.624205 CGACCAGGAGTAGTTTAGGAGGA 60.624 52.174 0.00 0.00 0.00 3.71
177 178 4.548669 GACCAGGAGTAGTTTAGGAGGAT 58.451 47.826 0.00 0.00 0.00 3.24
178 179 4.548669 ACCAGGAGTAGTTTAGGAGGATC 58.451 47.826 0.00 0.00 0.00 3.36
189 190 3.560989 GAGGATCCCAGGCAGGAG 58.439 66.667 8.55 0.00 39.95 3.69
190 191 2.040043 AGGATCCCAGGCAGGAGG 60.040 66.667 8.55 0.00 39.95 4.30
191 192 3.883549 GGATCCCAGGCAGGAGGC 61.884 72.222 0.00 0.00 39.95 4.70
207 208 2.512515 GCCTGCGCCTCTTTCGAT 60.513 61.111 4.18 0.00 0.00 3.59
208 209 2.529619 GCCTGCGCCTCTTTCGATC 61.530 63.158 4.18 0.00 0.00 3.69
209 210 1.153568 CCTGCGCCTCTTTCGATCA 60.154 57.895 4.18 0.00 0.00 2.92
210 211 1.150567 CCTGCGCCTCTTTCGATCAG 61.151 60.000 4.18 0.00 0.00 2.90
211 212 0.459237 CTGCGCCTCTTTCGATCAGT 60.459 55.000 4.18 0.00 0.00 3.41
212 213 0.815095 TGCGCCTCTTTCGATCAGTA 59.185 50.000 4.18 0.00 0.00 2.74
213 214 1.409064 TGCGCCTCTTTCGATCAGTAT 59.591 47.619 4.18 0.00 0.00 2.12
214 215 2.055100 GCGCCTCTTTCGATCAGTATC 58.945 52.381 0.00 0.00 0.00 2.24
215 216 2.667137 CGCCTCTTTCGATCAGTATCC 58.333 52.381 0.00 0.00 0.00 2.59
216 217 2.608261 CGCCTCTTTCGATCAGTATCCC 60.608 54.545 0.00 0.00 0.00 3.85
217 218 2.365617 GCCTCTTTCGATCAGTATCCCA 59.634 50.000 0.00 0.00 0.00 4.37
218 219 3.553922 GCCTCTTTCGATCAGTATCCCAG 60.554 52.174 0.00 0.00 0.00 4.45
219 220 3.639094 CCTCTTTCGATCAGTATCCCAGT 59.361 47.826 0.00 0.00 0.00 4.00
220 221 4.100189 CCTCTTTCGATCAGTATCCCAGTT 59.900 45.833 0.00 0.00 0.00 3.16
221 222 5.395768 CCTCTTTCGATCAGTATCCCAGTTT 60.396 44.000 0.00 0.00 0.00 2.66
222 223 5.419542 TCTTTCGATCAGTATCCCAGTTTG 58.580 41.667 0.00 0.00 0.00 2.93
223 224 4.819105 TTCGATCAGTATCCCAGTTTGT 57.181 40.909 0.00 0.00 0.00 2.83
224 225 4.123497 TCGATCAGTATCCCAGTTTGTG 57.877 45.455 0.00 0.00 0.00 3.33
225 226 2.609459 CGATCAGTATCCCAGTTTGTGC 59.391 50.000 0.00 0.00 0.00 4.57
226 227 3.679917 CGATCAGTATCCCAGTTTGTGCT 60.680 47.826 0.00 0.00 0.00 4.40
227 228 4.441495 CGATCAGTATCCCAGTTTGTGCTA 60.441 45.833 0.00 0.00 0.00 3.49
228 229 4.471904 TCAGTATCCCAGTTTGTGCTAG 57.528 45.455 0.00 0.00 0.00 3.42
229 230 2.939103 CAGTATCCCAGTTTGTGCTAGC 59.061 50.000 8.10 8.10 0.00 3.42
230 231 2.092914 AGTATCCCAGTTTGTGCTAGCC 60.093 50.000 13.29 4.15 0.00 3.93
231 232 0.995024 ATCCCAGTTTGTGCTAGCCT 59.005 50.000 13.29 0.00 0.00 4.58
232 233 0.771127 TCCCAGTTTGTGCTAGCCTT 59.229 50.000 13.29 0.00 0.00 4.35
233 234 1.168714 CCCAGTTTGTGCTAGCCTTC 58.831 55.000 13.29 3.48 0.00 3.46
234 235 1.271597 CCCAGTTTGTGCTAGCCTTCT 60.272 52.381 13.29 0.83 0.00 2.85
235 236 2.508526 CCAGTTTGTGCTAGCCTTCTT 58.491 47.619 13.29 0.00 0.00 2.52
236 237 3.559171 CCCAGTTTGTGCTAGCCTTCTTA 60.559 47.826 13.29 0.00 0.00 2.10
237 238 4.072131 CCAGTTTGTGCTAGCCTTCTTAA 58.928 43.478 13.29 0.00 0.00 1.85
238 239 4.154918 CCAGTTTGTGCTAGCCTTCTTAAG 59.845 45.833 13.29 0.00 0.00 1.85
254 255 7.886338 CCTTCTTAAGGCAATCTTGTTTAACT 58.114 34.615 1.85 0.00 42.78 2.24
255 256 8.360390 CCTTCTTAAGGCAATCTTGTTTAACTT 58.640 33.333 1.85 0.00 42.78 2.66
261 262 8.409358 AAGGCAATCTTGTTTAACTTATGTCT 57.591 30.769 0.00 0.00 33.76 3.41
262 263 7.820648 AGGCAATCTTGTTTAACTTATGTCTG 58.179 34.615 0.00 0.00 0.00 3.51
263 264 7.448469 AGGCAATCTTGTTTAACTTATGTCTGT 59.552 33.333 0.00 0.00 0.00 3.41
264 265 8.726988 GGCAATCTTGTTTAACTTATGTCTGTA 58.273 33.333 0.00 0.00 0.00 2.74
265 266 9.543018 GCAATCTTGTTTAACTTATGTCTGTAC 57.457 33.333 0.00 0.00 0.00 2.90
269 270 9.692749 TCTTGTTTAACTTATGTCTGTACTCAG 57.307 33.333 0.00 0.00 42.54 3.35
270 271 9.692749 CTTGTTTAACTTATGTCTGTACTCAGA 57.307 33.333 0.00 0.00 46.85 3.27
283 284 6.341316 TCTGTACTCAGATATTGTTGCTTCC 58.659 40.000 0.00 0.00 44.58 3.46
284 285 5.109210 TGTACTCAGATATTGTTGCTTCCG 58.891 41.667 0.00 0.00 0.00 4.30
285 286 2.939103 ACTCAGATATTGTTGCTTCCGC 59.061 45.455 0.00 0.00 0.00 5.54
286 287 3.201290 CTCAGATATTGTTGCTTCCGCT 58.799 45.455 0.00 0.00 36.97 5.52
287 288 2.938451 TCAGATATTGTTGCTTCCGCTG 59.062 45.455 0.00 0.00 36.97 5.18
288 289 2.938451 CAGATATTGTTGCTTCCGCTGA 59.062 45.455 0.00 0.00 36.97 4.26
289 290 2.939103 AGATATTGTTGCTTCCGCTGAC 59.061 45.455 0.00 0.00 36.97 3.51
290 291 2.472695 TATTGTTGCTTCCGCTGACT 57.527 45.000 0.00 0.00 36.97 3.41
291 292 1.160137 ATTGTTGCTTCCGCTGACTC 58.840 50.000 0.00 0.00 36.97 3.36
292 293 1.221466 TTGTTGCTTCCGCTGACTCG 61.221 55.000 0.00 0.00 36.97 4.18
293 294 1.664965 GTTGCTTCCGCTGACTCGT 60.665 57.895 0.00 0.00 36.97 4.18
294 295 1.372997 TTGCTTCCGCTGACTCGTC 60.373 57.895 0.00 0.00 36.97 4.20
295 296 1.806461 TTGCTTCCGCTGACTCGTCT 61.806 55.000 0.00 0.00 36.97 4.18
296 297 0.958876 TGCTTCCGCTGACTCGTCTA 60.959 55.000 0.00 0.00 36.97 2.59
297 298 0.382515 GCTTCCGCTGACTCGTCTAT 59.617 55.000 0.00 0.00 0.00 1.98
298 299 1.862008 GCTTCCGCTGACTCGTCTATG 60.862 57.143 0.00 0.00 0.00 2.23
299 300 1.671328 CTTCCGCTGACTCGTCTATGA 59.329 52.381 0.00 0.00 0.00 2.15
300 301 1.968704 TCCGCTGACTCGTCTATGAT 58.031 50.000 0.00 0.00 0.00 2.45
301 302 1.874231 TCCGCTGACTCGTCTATGATC 59.126 52.381 0.00 0.00 0.00 2.92
302 303 1.399087 CCGCTGACTCGTCTATGATCG 60.399 57.143 0.00 0.00 0.00 3.69
303 304 1.527311 CGCTGACTCGTCTATGATCGA 59.473 52.381 0.00 0.00 34.88 3.59
309 310 3.617540 CTCGTCTATGATCGAGCACTT 57.382 47.619 5.03 0.00 44.82 3.16
310 311 3.295785 CTCGTCTATGATCGAGCACTTG 58.704 50.000 5.03 0.00 44.82 3.16
311 312 2.683362 TCGTCTATGATCGAGCACTTGT 59.317 45.455 5.03 0.00 0.00 3.16
312 313 3.875134 TCGTCTATGATCGAGCACTTGTA 59.125 43.478 5.03 0.00 0.00 2.41
313 314 4.515567 TCGTCTATGATCGAGCACTTGTAT 59.484 41.667 5.03 0.00 0.00 2.29
314 315 5.008712 TCGTCTATGATCGAGCACTTGTATT 59.991 40.000 5.03 0.00 0.00 1.89
315 316 5.340932 CGTCTATGATCGAGCACTTGTATTC 59.659 44.000 5.03 0.00 0.00 1.75
316 317 5.340932 GTCTATGATCGAGCACTTGTATTCG 59.659 44.000 5.03 0.00 34.56 3.34
317 318 3.775661 TGATCGAGCACTTGTATTCGA 57.224 42.857 0.00 9.86 44.88 3.71
318 319 3.695816 TGATCGAGCACTTGTATTCGAG 58.304 45.455 0.00 0.00 44.14 4.04
319 320 1.909376 TCGAGCACTTGTATTCGAGC 58.091 50.000 5.19 0.00 37.18 5.03
320 321 0.924090 CGAGCACTTGTATTCGAGCC 59.076 55.000 0.00 0.00 35.19 4.70
321 322 1.291132 GAGCACTTGTATTCGAGCCC 58.709 55.000 0.00 0.00 0.00 5.19
322 323 0.905357 AGCACTTGTATTCGAGCCCT 59.095 50.000 0.00 0.00 0.00 5.19
323 324 1.134670 AGCACTTGTATTCGAGCCCTC 60.135 52.381 0.00 0.00 0.00 4.30
345 346 2.641197 GCCCCCGGCTTGTATTATG 58.359 57.895 0.00 0.00 46.69 1.90
346 347 0.109723 GCCCCCGGCTTGTATTATGA 59.890 55.000 0.00 0.00 46.69 2.15
347 348 1.271926 GCCCCCGGCTTGTATTATGAT 60.272 52.381 0.00 0.00 46.69 2.45
348 349 2.436417 CCCCCGGCTTGTATTATGATG 58.564 52.381 0.00 0.00 0.00 3.07
349 350 1.812571 CCCCGGCTTGTATTATGATGC 59.187 52.381 0.00 0.00 0.00 3.91
350 351 2.553028 CCCCGGCTTGTATTATGATGCT 60.553 50.000 0.00 0.00 0.00 3.79
351 352 3.149196 CCCGGCTTGTATTATGATGCTT 58.851 45.455 0.00 0.00 0.00 3.91
352 353 3.058016 CCCGGCTTGTATTATGATGCTTG 60.058 47.826 0.00 0.00 0.00 4.01
353 354 3.565482 CCGGCTTGTATTATGATGCTTGT 59.435 43.478 0.00 0.00 0.00 3.16
354 355 4.754618 CCGGCTTGTATTATGATGCTTGTA 59.245 41.667 0.00 0.00 0.00 2.41
355 356 5.412594 CCGGCTTGTATTATGATGCTTGTAT 59.587 40.000 0.00 0.00 0.00 2.29
356 357 6.309436 CGGCTTGTATTATGATGCTTGTATG 58.691 40.000 0.00 0.00 0.00 2.39
357 358 6.147656 CGGCTTGTATTATGATGCTTGTATGA 59.852 38.462 0.00 0.00 0.00 2.15
358 359 7.301054 GGCTTGTATTATGATGCTTGTATGAC 58.699 38.462 0.00 0.00 0.00 3.06
359 360 7.173907 GGCTTGTATTATGATGCTTGTATGACT 59.826 37.037 0.00 0.00 0.00 3.41
360 361 8.562892 GCTTGTATTATGATGCTTGTATGACTT 58.437 33.333 0.00 0.00 0.00 3.01
394 395 8.547967 TTTAGAGTTGTGTTGTGATATCTTCC 57.452 34.615 3.98 0.00 0.00 3.46
395 396 5.491982 AGAGTTGTGTTGTGATATCTTCCC 58.508 41.667 3.98 0.00 0.00 3.97
396 397 4.253685 AGTTGTGTTGTGATATCTTCCCG 58.746 43.478 3.98 0.00 0.00 5.14
397 398 3.973206 TGTGTTGTGATATCTTCCCGT 57.027 42.857 3.98 0.00 0.00 5.28
398 399 3.595173 TGTGTTGTGATATCTTCCCGTG 58.405 45.455 3.98 0.00 0.00 4.94
399 400 3.259625 TGTGTTGTGATATCTTCCCGTGA 59.740 43.478 3.98 0.00 0.00 4.35
400 401 3.865745 GTGTTGTGATATCTTCCCGTGAG 59.134 47.826 3.98 0.00 0.00 3.51
401 402 3.513912 TGTTGTGATATCTTCCCGTGAGT 59.486 43.478 3.98 0.00 0.00 3.41
402 403 3.801114 TGTGATATCTTCCCGTGAGTG 57.199 47.619 3.98 0.00 0.00 3.51
403 404 2.159099 TGTGATATCTTCCCGTGAGTGC 60.159 50.000 3.98 0.00 0.00 4.40
404 405 1.412710 TGATATCTTCCCGTGAGTGCC 59.587 52.381 3.98 0.00 0.00 5.01
405 406 1.689273 GATATCTTCCCGTGAGTGCCT 59.311 52.381 0.00 0.00 0.00 4.75
406 407 0.824109 TATCTTCCCGTGAGTGCCTG 59.176 55.000 0.00 0.00 0.00 4.85
407 408 0.904865 ATCTTCCCGTGAGTGCCTGA 60.905 55.000 0.00 0.00 0.00 3.86
408 409 0.904865 TCTTCCCGTGAGTGCCTGAT 60.905 55.000 0.00 0.00 0.00 2.90
409 410 0.460987 CTTCCCGTGAGTGCCTGATC 60.461 60.000 0.00 0.00 0.00 2.92
410 411 0.904865 TTCCCGTGAGTGCCTGATCT 60.905 55.000 0.00 0.00 0.00 2.75
411 412 0.904865 TCCCGTGAGTGCCTGATCTT 60.905 55.000 0.00 0.00 0.00 2.40
412 413 0.742281 CCCGTGAGTGCCTGATCTTG 60.742 60.000 0.00 0.00 0.00 3.02
413 414 0.247460 CCGTGAGTGCCTGATCTTGA 59.753 55.000 0.00 0.00 0.00 3.02
414 415 1.134580 CCGTGAGTGCCTGATCTTGAT 60.135 52.381 0.00 0.00 0.00 2.57
415 416 2.200067 CGTGAGTGCCTGATCTTGATC 58.800 52.381 3.82 3.82 0.00 2.92
416 417 2.200067 GTGAGTGCCTGATCTTGATCG 58.800 52.381 6.19 2.03 0.00 3.69
417 418 1.827344 TGAGTGCCTGATCTTGATCGT 59.173 47.619 6.19 0.00 0.00 3.73
418 419 3.023832 TGAGTGCCTGATCTTGATCGTA 58.976 45.455 6.19 0.00 0.00 3.43
419 420 3.181486 TGAGTGCCTGATCTTGATCGTAC 60.181 47.826 6.19 3.32 0.00 3.67
420 421 2.760650 AGTGCCTGATCTTGATCGTACA 59.239 45.455 6.19 1.81 0.00 2.90
421 422 2.860735 GTGCCTGATCTTGATCGTACAC 59.139 50.000 6.19 9.12 0.00 2.90
422 423 2.120232 GCCTGATCTTGATCGTACACG 58.880 52.381 6.19 0.00 41.45 4.49
423 424 2.479730 GCCTGATCTTGATCGTACACGT 60.480 50.000 1.19 0.00 40.80 4.49
424 425 3.770666 CCTGATCTTGATCGTACACGTT 58.229 45.455 1.19 0.00 40.80 3.99
425 426 4.174009 CCTGATCTTGATCGTACACGTTT 58.826 43.478 1.19 0.00 40.80 3.60
426 427 4.031765 CCTGATCTTGATCGTACACGTTTG 59.968 45.833 1.19 0.00 40.80 2.93
427 428 3.366724 TGATCTTGATCGTACACGTTTGC 59.633 43.478 1.19 0.00 40.80 3.68
428 429 1.717113 TCTTGATCGTACACGTTTGCG 59.283 47.619 5.81 5.81 44.93 4.85
442 443 4.577687 CGTTTGCGTGTATGATTAGTGT 57.422 40.909 0.00 0.00 0.00 3.55
443 444 5.689927 CGTTTGCGTGTATGATTAGTGTA 57.310 39.130 0.00 0.00 0.00 2.90
444 445 5.478001 CGTTTGCGTGTATGATTAGTGTAC 58.522 41.667 0.00 0.00 0.00 2.90
445 446 5.478001 GTTTGCGTGTATGATTAGTGTACG 58.522 41.667 0.00 0.00 0.00 3.67
446 447 4.619437 TGCGTGTATGATTAGTGTACGA 57.381 40.909 0.00 0.00 32.36 3.43
447 448 5.177725 TGCGTGTATGATTAGTGTACGAT 57.822 39.130 0.00 0.00 32.36 3.73
448 449 5.584442 TGCGTGTATGATTAGTGTACGATT 58.416 37.500 0.00 0.00 32.36 3.34
449 450 5.457473 TGCGTGTATGATTAGTGTACGATTG 59.543 40.000 0.00 0.00 32.36 2.67
450 451 5.684184 GCGTGTATGATTAGTGTACGATTGA 59.316 40.000 0.00 0.00 32.36 2.57
451 452 6.197655 GCGTGTATGATTAGTGTACGATTGAA 59.802 38.462 0.00 0.00 32.36 2.69
452 453 7.096189 GCGTGTATGATTAGTGTACGATTGAAT 60.096 37.037 0.00 0.00 32.36 2.57
453 454 8.417928 CGTGTATGATTAGTGTACGATTGAATC 58.582 37.037 0.00 0.00 32.36 2.52
463 464 3.362581 GATTGAATCGGGAGCGTCA 57.637 52.632 0.00 0.00 0.00 4.35
464 465 0.931005 GATTGAATCGGGAGCGTCAC 59.069 55.000 0.00 0.00 0.00 3.67
465 466 0.249120 ATTGAATCGGGAGCGTCACA 59.751 50.000 0.00 0.00 0.00 3.58
466 467 0.389817 TTGAATCGGGAGCGTCACAG 60.390 55.000 0.00 0.00 0.00 3.66
467 468 1.519455 GAATCGGGAGCGTCACAGG 60.519 63.158 0.00 0.00 0.00 4.00
468 469 2.227089 GAATCGGGAGCGTCACAGGT 62.227 60.000 0.00 0.00 0.00 4.00
469 470 1.827399 AATCGGGAGCGTCACAGGTT 61.827 55.000 0.00 0.00 0.00 3.50
470 471 1.827399 ATCGGGAGCGTCACAGGTTT 61.827 55.000 0.00 0.00 0.00 3.27
471 472 1.180456 TCGGGAGCGTCACAGGTTTA 61.180 55.000 0.00 0.00 0.00 2.01
472 473 0.736325 CGGGAGCGTCACAGGTTTAG 60.736 60.000 0.00 0.00 0.00 1.85
473 474 0.320697 GGGAGCGTCACAGGTTTAGT 59.679 55.000 0.00 0.00 0.00 2.24
474 475 1.429463 GGAGCGTCACAGGTTTAGTG 58.571 55.000 0.00 0.00 38.32 2.74
475 476 1.000506 GGAGCGTCACAGGTTTAGTGA 59.999 52.381 0.00 0.00 43.23 3.41
483 484 4.624015 TCACAGGTTTAGTGACGTAAAGG 58.376 43.478 0.00 0.00 40.80 3.11
484 485 3.185797 CACAGGTTTAGTGACGTAAAGGC 59.814 47.826 0.00 0.00 39.30 4.35
485 486 3.070590 ACAGGTTTAGTGACGTAAAGGCT 59.929 43.478 0.00 0.00 0.00 4.58
486 487 4.281688 ACAGGTTTAGTGACGTAAAGGCTA 59.718 41.667 0.00 0.00 0.00 3.93
487 488 4.624452 CAGGTTTAGTGACGTAAAGGCTAC 59.376 45.833 0.00 0.00 0.00 3.58
488 489 4.281688 AGGTTTAGTGACGTAAAGGCTACA 59.718 41.667 0.00 0.00 0.00 2.74
489 490 4.990426 GGTTTAGTGACGTAAAGGCTACAA 59.010 41.667 0.00 0.00 0.00 2.41
490 491 5.640783 GGTTTAGTGACGTAAAGGCTACAAT 59.359 40.000 0.00 0.00 0.00 2.71
491 492 6.183360 GGTTTAGTGACGTAAAGGCTACAATC 60.183 42.308 0.00 0.00 0.00 2.67
492 493 4.530710 AGTGACGTAAAGGCTACAATCA 57.469 40.909 0.00 0.00 0.00 2.57
493 494 4.243270 AGTGACGTAAAGGCTACAATCAC 58.757 43.478 11.29 11.29 35.30 3.06
494 495 3.991773 GTGACGTAAAGGCTACAATCACA 59.008 43.478 13.18 0.00 35.23 3.58
495 496 4.091509 GTGACGTAAAGGCTACAATCACAG 59.908 45.833 13.18 0.00 35.23 3.66
496 497 3.596214 ACGTAAAGGCTACAATCACAGG 58.404 45.455 0.00 0.00 0.00 4.00
497 498 3.007614 ACGTAAAGGCTACAATCACAGGT 59.992 43.478 0.00 0.00 0.00 4.00
498 499 3.370978 CGTAAAGGCTACAATCACAGGTG 59.629 47.826 0.00 0.00 0.00 4.00
499 500 2.496899 AAGGCTACAATCACAGGTGG 57.503 50.000 0.00 0.00 0.00 4.61
500 501 0.035056 AGGCTACAATCACAGGTGGC 60.035 55.000 0.00 0.00 40.33 5.01
501 502 2.482326 GCTACAATCACAGGTGGCC 58.518 57.895 0.00 0.00 35.72 5.36
502 503 1.032114 GCTACAATCACAGGTGGCCC 61.032 60.000 0.00 0.00 35.72 5.80
503 504 0.327924 CTACAATCACAGGTGGCCCA 59.672 55.000 0.00 0.00 0.00 5.36
504 505 0.774276 TACAATCACAGGTGGCCCAA 59.226 50.000 0.00 0.00 0.00 4.12
505 506 0.827507 ACAATCACAGGTGGCCCAAC 60.828 55.000 0.00 0.00 0.00 3.77
506 507 0.827089 CAATCACAGGTGGCCCAACA 60.827 55.000 0.00 0.00 0.00 3.33
507 508 0.105760 AATCACAGGTGGCCCAACAA 60.106 50.000 0.00 0.00 0.00 2.83
508 509 0.540365 ATCACAGGTGGCCCAACAAG 60.540 55.000 0.00 0.00 0.00 3.16
509 510 1.455587 CACAGGTGGCCCAACAAGT 60.456 57.895 0.00 0.00 0.00 3.16
510 511 0.179004 CACAGGTGGCCCAACAAGTA 60.179 55.000 0.00 0.00 0.00 2.24
511 512 0.110486 ACAGGTGGCCCAACAAGTAG 59.890 55.000 0.00 0.00 0.00 2.57
512 513 0.609131 CAGGTGGCCCAACAAGTAGG 60.609 60.000 0.00 0.00 0.00 3.18
513 514 1.977009 GGTGGCCCAACAAGTAGGC 60.977 63.158 0.00 5.80 46.37 3.93
517 518 3.970205 GCCCAACAAGTAGGCCTAA 57.030 52.632 15.83 0.00 41.00 2.69
518 519 1.460504 GCCCAACAAGTAGGCCTAAC 58.539 55.000 15.83 9.12 41.00 2.34
519 520 1.004394 GCCCAACAAGTAGGCCTAACT 59.996 52.381 15.83 11.40 41.00 2.24
520 521 2.711542 CCCAACAAGTAGGCCTAACTG 58.288 52.381 15.83 16.67 0.00 3.16
521 522 2.618045 CCCAACAAGTAGGCCTAACTGG 60.618 54.545 15.83 15.46 39.35 4.00
522 523 2.039879 CCAACAAGTAGGCCTAACTGGT 59.960 50.000 15.83 14.44 38.35 4.00
523 524 3.335579 CAACAAGTAGGCCTAACTGGTC 58.664 50.000 15.83 0.10 41.82 4.02
524 525 2.616524 ACAAGTAGGCCTAACTGGTCA 58.383 47.619 15.83 0.00 44.59 4.02
525 526 2.976882 ACAAGTAGGCCTAACTGGTCAA 59.023 45.455 15.83 0.00 44.59 3.18
526 527 3.587506 ACAAGTAGGCCTAACTGGTCAAT 59.412 43.478 15.83 0.00 44.59 2.57
527 528 3.914426 AGTAGGCCTAACTGGTCAATG 57.086 47.619 15.83 0.00 44.59 2.82
528 529 3.182152 AGTAGGCCTAACTGGTCAATGT 58.818 45.455 15.83 0.00 44.59 2.71
529 530 3.587506 AGTAGGCCTAACTGGTCAATGTT 59.412 43.478 15.83 0.00 44.59 2.71
530 531 3.525800 AGGCCTAACTGGTCAATGTTT 57.474 42.857 1.29 0.00 44.59 2.83
531 532 4.650972 AGGCCTAACTGGTCAATGTTTA 57.349 40.909 1.29 0.00 44.59 2.01
532 533 4.332828 AGGCCTAACTGGTCAATGTTTAC 58.667 43.478 1.29 0.00 44.59 2.01
533 534 4.076394 GGCCTAACTGGTCAATGTTTACA 58.924 43.478 0.00 0.00 40.97 2.41
534 535 4.705023 GGCCTAACTGGTCAATGTTTACAT 59.295 41.667 0.00 0.00 40.97 2.29
535 536 5.163652 GGCCTAACTGGTCAATGTTTACATC 60.164 44.000 0.00 0.00 40.97 3.06
536 537 5.414454 GCCTAACTGGTCAATGTTTACATCA 59.586 40.000 0.00 0.00 35.13 3.07
562 563 2.363038 TGCAATGGCTCTTATGGCAATC 59.637 45.455 0.00 0.00 45.43 2.67
592 593 7.367285 GCACAAATGTGGTGATTTTTCTACTA 58.633 34.615 14.85 0.00 45.72 1.82
641 643 7.993183 ACCTGAAGTTTTCTTTAAGTCTCATGA 59.007 33.333 0.00 0.00 40.61 3.07
643 645 9.657121 CTGAAGTTTTCTTTAAGTCTCATGAAC 57.343 33.333 0.00 0.00 40.61 3.18
692 694 9.868277 TTGTTTATTTGAAACTCTTGTGTGAAT 57.132 25.926 2.23 0.00 0.00 2.57
747 749 1.600638 GCTTACCGGCCCAGTTACT 59.399 57.895 0.00 0.00 0.00 2.24
765 767 3.294493 CACCCAAAGGCCGTGTGG 61.294 66.667 13.78 13.78 36.11 4.17
819 821 0.250338 GTGCTTCTGTTCCGAACCCT 60.250 55.000 8.80 0.00 0.00 4.34
827 829 1.770927 TTCCGAACCCTGAACCCCA 60.771 57.895 0.00 0.00 0.00 4.96
962 975 0.536260 CCTCTCTGCTCCAGACCAAG 59.464 60.000 0.00 0.00 35.39 3.61
1032 1045 1.847328 TGAGGAGATCAGTAACGGCA 58.153 50.000 0.00 0.00 32.77 5.69
1282 1295 1.613630 AGTGATTCGGGCAGGAGGT 60.614 57.895 0.00 0.00 0.00 3.85
1425 1438 1.063183 GAGATGGGGAGAAGGATGGG 58.937 60.000 0.00 0.00 0.00 4.00
1494 1507 0.029267 AGGCAGGGAAGGAGGATGAT 60.029 55.000 0.00 0.00 0.00 2.45
1626 1639 1.849976 GCATGAAGGGCTATGCTCGC 61.850 60.000 0.00 0.00 44.70 5.03
1662 1675 0.108186 TGTGGCACCATAAGAGCGAG 60.108 55.000 16.26 0.00 0.00 5.03
1827 1840 0.941542 TTCTAAACTGCGTGTGCCAC 59.058 50.000 0.00 0.00 41.78 5.01
1833 1846 0.819259 ACTGCGTGTGCCACAGAAAT 60.819 50.000 0.00 0.00 41.78 2.17
1905 1918 3.708631 CTGAGATGAGGTCCTATGGTGTT 59.291 47.826 0.00 0.00 0.00 3.32
1917 1930 3.181443 CCTATGGTGTTACCCCTGATTCC 60.181 52.174 0.00 0.00 37.50 3.01
1932 1945 4.015084 CTGATTCCTCCAGCTTCAACATT 58.985 43.478 0.00 0.00 0.00 2.71
1938 1951 5.003804 TCCTCCAGCTTCAACATTTTACTC 58.996 41.667 0.00 0.00 0.00 2.59
1971 1984 3.648009 ACGAGCAAGAAGAGTGAAAGAG 58.352 45.455 0.00 0.00 0.00 2.85
1979 1992 5.489792 AGAAGAGTGAAAGAGGCATACAA 57.510 39.130 0.00 0.00 0.00 2.41
2154 2167 4.248058 CAAAGTTTTTCCATGGCCTCATC 58.752 43.478 6.96 0.00 0.00 2.92
2204 2217 5.005094 TGATCATGCTCTTGACATGTTCAA 58.995 37.500 12.63 5.24 44.87 2.69
2222 2235 8.918658 CATGTTCAAAATTATGAAGAGTTGTGG 58.081 33.333 0.00 0.00 39.84 4.17
2280 2293 5.780793 AGAAAAGCTTTCTAGGAGTGGTAGA 59.219 40.000 13.10 0.00 0.00 2.59
2435 2448 4.081420 TCAGAACTGTAAGAGCTTGATCCC 60.081 45.833 1.73 0.00 37.43 3.85
2523 2536 4.600983 GGGAGTCTAGGTACTATGGGACTA 59.399 50.000 0.00 0.00 41.82 2.59
2595 2616 7.402054 ACTATGTGATGATGACCCTTGTTTTA 58.598 34.615 0.00 0.00 0.00 1.52
2607 2628 8.441312 TGACCCTTGTTTTAGTTGTTACTTAG 57.559 34.615 0.00 0.00 35.78 2.18
2633 2654 9.434559 GTAAACTCAAGTAATCAGTTGTCAAAC 57.565 33.333 0.00 0.00 36.60 2.93
2642 2663 3.287222 TCAGTTGTCAAACCTTTCCTGG 58.713 45.455 0.00 0.00 36.94 4.45
2646 2667 2.661718 TGTCAAACCTTTCCTGGAACC 58.338 47.619 9.04 0.00 0.00 3.62
2653 2674 2.290960 ACCTTTCCTGGAACCTACATGC 60.291 50.000 9.04 0.00 0.00 4.06
2676 2697 8.006298 TGCAATTACCCTATTTTTATGTGGAG 57.994 34.615 0.00 0.00 0.00 3.86
2677 2698 7.617723 TGCAATTACCCTATTTTTATGTGGAGT 59.382 33.333 0.00 0.00 0.00 3.85
2678 2699 8.135529 GCAATTACCCTATTTTTATGTGGAGTC 58.864 37.037 0.00 0.00 0.00 3.36
2679 2700 8.630037 CAATTACCCTATTTTTATGTGGAGTCC 58.370 37.037 0.73 0.73 0.00 3.85
2680 2701 4.777463 ACCCTATTTTTATGTGGAGTCCG 58.223 43.478 4.30 0.00 0.00 4.79
2747 2772 6.942532 ATTCAGTGAAGCTGTTACTTTTGA 57.057 33.333 11.91 0.00 45.23 2.69
2771 2796 9.748708 TGATTTTAGTATTTTATTGCCATCTGC 57.251 29.630 0.00 0.00 41.77 4.26
2783 2809 4.286297 TGCCATCTGCCCATTATAGTAC 57.714 45.455 0.00 0.00 40.16 2.73
2784 2810 3.909995 TGCCATCTGCCCATTATAGTACT 59.090 43.478 0.00 0.00 40.16 2.73
2785 2811 4.020218 TGCCATCTGCCCATTATAGTACTC 60.020 45.833 0.00 0.00 40.16 2.59
2786 2812 4.223923 GCCATCTGCCCATTATAGTACTCT 59.776 45.833 0.00 0.00 0.00 3.24
2787 2813 5.422331 GCCATCTGCCCATTATAGTACTCTA 59.578 44.000 0.00 0.00 0.00 2.43
2823 2849 0.745845 GGCACTCTGGCAGTATGGTG 60.746 60.000 15.27 18.02 43.14 4.17
2832 2858 2.280628 GGCAGTATGGTGTAGCAACTC 58.719 52.381 0.00 0.00 35.86 3.01
2833 2859 2.093447 GGCAGTATGGTGTAGCAACTCT 60.093 50.000 0.00 0.00 35.86 3.24
2843 2876 4.202172 GGTGTAGCAACTCTCCTCCTTATC 60.202 50.000 0.00 0.00 0.00 1.75
2908 2942 0.111253 CTGTTTGCTGACCTTCCCCT 59.889 55.000 0.00 0.00 0.00 4.79
2925 2959 6.413783 TTCCCCTTTTTCTTTATTGTCACC 57.586 37.500 0.00 0.00 0.00 4.02
2942 2976 4.093703 TGTCACCGTTACAGTTCTGTTTTG 59.906 41.667 10.74 1.81 0.00 2.44
2945 2979 4.331717 CACCGTTACAGTTCTGTTTTGAGT 59.668 41.667 10.74 1.23 0.00 3.41
2952 2986 4.158394 ACAGTTCTGTTTTGAGTGCACATT 59.842 37.500 21.04 0.00 0.00 2.71
2972 3006 7.859377 GCACATTGAACTTTATGGACATATCTG 59.141 37.037 0.00 0.00 0.00 2.90
3054 3088 8.429641 TCAAAACTCCAGACTTGTATAGTTTCT 58.570 33.333 0.00 0.00 36.45 2.52
3055 3089 9.706691 CAAAACTCCAGACTTGTATAGTTTCTA 57.293 33.333 0.00 0.00 36.45 2.10
3114 3148 4.226761 GTTTGCAGAGGGTATTTGTTTCG 58.773 43.478 0.00 0.00 0.00 3.46
3150 3184 4.403453 GAAAATGCGTAATCAAAGAGCGT 58.597 39.130 0.00 0.00 0.00 5.07
3175 3209 4.188247 TCAAAGAAGTATCGACACCCAG 57.812 45.455 0.00 0.00 0.00 4.45
3263 3297 9.822727 TTTTCTTTTGAGATAATCTACCCCTTT 57.177 29.630 0.00 0.00 0.00 3.11
3264 3298 9.822727 TTTCTTTTGAGATAATCTACCCCTTTT 57.177 29.630 0.00 0.00 0.00 2.27
3327 3361 8.365399 TCTTTCAAAGATGTATAGTATTGCCG 57.635 34.615 0.00 0.00 31.20 5.69
3328 3362 7.985184 TCTTTCAAAGATGTATAGTATTGCCGT 59.015 33.333 0.00 0.00 31.20 5.68
3329 3363 9.256477 CTTTCAAAGATGTATAGTATTGCCGTA 57.744 33.333 0.00 0.00 0.00 4.02
3330 3364 9.772973 TTTCAAAGATGTATAGTATTGCCGTAT 57.227 29.630 0.00 0.00 0.00 3.06
3331 3365 9.772973 TTCAAAGATGTATAGTATTGCCGTATT 57.227 29.630 0.00 0.00 0.00 1.89
3332 3366 9.203421 TCAAAGATGTATAGTATTGCCGTATTG 57.797 33.333 0.00 0.00 0.00 1.90
3333 3367 8.443160 CAAAGATGTATAGTATTGCCGTATTGG 58.557 37.037 0.00 0.00 42.50 3.16
3374 3408 6.790285 ATTTTGTTTATCAAGCAGCAAAGG 57.210 33.333 0.00 0.00 37.35 3.11
3429 3463 8.641498 AACTCTTGTCCAGTTTCATATTGAAT 57.359 30.769 0.00 0.00 36.11 2.57
3432 3466 8.634335 TCTTGTCCAGTTTCATATTGAATGAA 57.366 30.769 0.00 0.00 36.11 2.57
3433 3467 8.733458 TCTTGTCCAGTTTCATATTGAATGAAG 58.267 33.333 1.18 0.00 38.98 3.02
3435 3469 8.634335 TGTCCAGTTTCATATTGAATGAAGAA 57.366 30.769 1.18 0.00 38.98 2.52
3459 3493 9.290988 GAAGATAGAACCATAGAGTGATCTGTA 57.709 37.037 0.00 0.00 0.00 2.74
3460 3494 8.862325 AGATAGAACCATAGAGTGATCTGTAG 57.138 38.462 0.00 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.987821 GAGAAAGCAACCGTGAGTACTC 59.012 50.000 16.32 16.32 0.00 2.59
5 6 0.250338 GGGAGAAAGCAACCGTGAGT 60.250 55.000 0.00 0.00 0.00 3.41
6 7 0.035458 AGGGAGAAAGCAACCGTGAG 59.965 55.000 0.00 0.00 0.00 3.51
7 8 0.034896 GAGGGAGAAAGCAACCGTGA 59.965 55.000 0.00 0.00 0.00 4.35
8 9 0.035458 AGAGGGAGAAAGCAACCGTG 59.965 55.000 0.00 0.00 0.00 4.94
9 10 0.765510 AAGAGGGAGAAAGCAACCGT 59.234 50.000 0.00 0.00 0.00 4.83
10 11 1.807142 GAAAGAGGGAGAAAGCAACCG 59.193 52.381 0.00 0.00 0.00 4.44
11 12 2.163509 GGAAAGAGGGAGAAAGCAACC 58.836 52.381 0.00 0.00 0.00 3.77
12 13 2.163509 GGGAAAGAGGGAGAAAGCAAC 58.836 52.381 0.00 0.00 0.00 4.17
13 14 1.075536 GGGGAAAGAGGGAGAAAGCAA 59.924 52.381 0.00 0.00 0.00 3.91
14 15 0.698818 GGGGAAAGAGGGAGAAAGCA 59.301 55.000 0.00 0.00 0.00 3.91
15 16 0.033991 GGGGGAAAGAGGGAGAAAGC 60.034 60.000 0.00 0.00 0.00 3.51
32 33 0.846693 CAGGTAGGATGGAAAGGGGG 59.153 60.000 0.00 0.00 0.00 5.40
33 34 0.846693 CCAGGTAGGATGGAAAGGGG 59.153 60.000 0.00 0.00 40.51 4.79
34 35 1.596496 ACCAGGTAGGATGGAAAGGG 58.404 55.000 0.00 0.00 40.51 3.95
35 36 2.308866 ACAACCAGGTAGGATGGAAAGG 59.691 50.000 0.00 0.00 44.04 3.11
36 37 3.610911 GACAACCAGGTAGGATGGAAAG 58.389 50.000 0.00 0.00 44.04 2.62
37 38 2.027561 CGACAACCAGGTAGGATGGAAA 60.028 50.000 0.00 0.00 44.04 3.13
38 39 1.553248 CGACAACCAGGTAGGATGGAA 59.447 52.381 0.00 0.00 44.04 3.53
39 40 1.191535 CGACAACCAGGTAGGATGGA 58.808 55.000 0.00 0.00 44.04 3.41
40 41 0.462047 GCGACAACCAGGTAGGATGG 60.462 60.000 0.00 0.00 44.04 3.51
41 42 0.249120 TGCGACAACCAGGTAGGATG 59.751 55.000 0.00 0.00 45.18 3.51
42 43 0.981183 TTGCGACAACCAGGTAGGAT 59.019 50.000 0.00 0.00 41.22 3.24
43 44 0.034337 GTTGCGACAACCAGGTAGGA 59.966 55.000 10.43 0.00 41.22 2.94
44 45 0.953960 GGTTGCGACAACCAGGTAGG 60.954 60.000 26.54 0.00 45.67 3.18
45 46 0.250124 TGGTTGCGACAACCAGGTAG 60.250 55.000 28.84 0.00 44.74 3.18
46 47 1.830836 TGGTTGCGACAACCAGGTA 59.169 52.632 28.84 14.46 44.74 3.08
47 48 2.592864 TGGTTGCGACAACCAGGT 59.407 55.556 28.84 0.00 44.74 4.00
51 52 0.951558 AACATCTGGTTGCGACAACC 59.048 50.000 25.46 25.46 38.60 3.77
60 61 0.038744 CTGGGCTCCAACATCTGGTT 59.961 55.000 0.00 0.00 46.51 3.67
61 62 1.687612 CTGGGCTCCAACATCTGGT 59.312 57.895 0.00 0.00 46.51 4.00
63 64 0.107312 CTCCTGGGCTCCAACATCTG 60.107 60.000 0.00 0.00 30.80 2.90
64 65 1.919600 GCTCCTGGGCTCCAACATCT 61.920 60.000 0.00 0.00 30.80 2.90
65 66 1.452833 GCTCCTGGGCTCCAACATC 60.453 63.158 0.00 0.00 30.80 3.06
66 67 2.679716 GCTCCTGGGCTCCAACAT 59.320 61.111 0.00 0.00 30.80 2.71
67 68 3.650950 GGCTCCTGGGCTCCAACA 61.651 66.667 7.03 0.00 37.53 3.33
68 69 3.635268 CTGGCTCCTGGGCTCCAAC 62.635 68.421 7.03 0.00 41.48 3.77
69 70 3.333219 CTGGCTCCTGGGCTCCAA 61.333 66.667 7.03 0.00 41.48 3.53
70 71 4.337304 TCTGGCTCCTGGGCTCCA 62.337 66.667 7.03 5.09 41.48 3.86
71 72 3.791586 GTCTGGCTCCTGGGCTCC 61.792 72.222 7.03 0.98 41.48 4.70
72 73 4.154347 CGTCTGGCTCCTGGGCTC 62.154 72.222 7.03 0.00 41.48 4.70
76 77 4.767255 GTGGCGTCTGGCTCCTGG 62.767 72.222 0.00 0.00 42.94 4.45
88 89 4.986587 TTGTCGTCGACGGTGGCG 62.987 66.667 35.05 11.39 40.29 5.69
89 90 3.400590 GTTGTCGTCGACGGTGGC 61.401 66.667 35.05 22.53 40.29 5.01
90 91 1.728426 GAGTTGTCGTCGACGGTGG 60.728 63.158 35.05 10.02 40.29 4.61
91 92 1.728426 GGAGTTGTCGTCGACGGTG 60.728 63.158 35.05 10.40 40.29 4.94
92 93 0.603707 TAGGAGTTGTCGTCGACGGT 60.604 55.000 35.05 16.32 40.29 4.83
93 94 0.179205 GTAGGAGTTGTCGTCGACGG 60.179 60.000 35.05 18.25 40.29 4.79
94 95 0.795085 AGTAGGAGTTGTCGTCGACG 59.205 55.000 31.30 31.30 41.45 5.12
95 96 2.738846 TGTAGTAGGAGTTGTCGTCGAC 59.261 50.000 18.51 18.51 0.00 4.20
96 97 2.738846 GTGTAGTAGGAGTTGTCGTCGA 59.261 50.000 0.00 0.00 0.00 4.20
97 98 2.159599 GGTGTAGTAGGAGTTGTCGTCG 60.160 54.545 0.00 0.00 0.00 5.12
98 99 2.159599 CGGTGTAGTAGGAGTTGTCGTC 60.160 54.545 0.00 0.00 0.00 4.20
99 100 1.808945 CGGTGTAGTAGGAGTTGTCGT 59.191 52.381 0.00 0.00 0.00 4.34
100 101 1.131883 CCGGTGTAGTAGGAGTTGTCG 59.868 57.143 0.00 0.00 0.00 4.35
101 102 2.422832 CTCCGGTGTAGTAGGAGTTGTC 59.577 54.545 0.00 0.00 44.79 3.18
102 103 2.444421 CTCCGGTGTAGTAGGAGTTGT 58.556 52.381 0.00 0.00 44.79 3.32
116 117 0.921896 TAGTAGTAGGCACCTCCGGT 59.078 55.000 0.00 0.00 40.77 5.28
117 118 1.316651 GTAGTAGTAGGCACCTCCGG 58.683 60.000 0.00 0.00 40.77 5.14
118 119 0.942962 CGTAGTAGTAGGCACCTCCG 59.057 60.000 0.00 0.00 40.77 4.63
119 120 1.674962 CACGTAGTAGTAGGCACCTCC 59.325 57.143 0.00 0.00 41.61 4.30
120 121 1.065251 GCACGTAGTAGTAGGCACCTC 59.935 57.143 0.00 0.00 41.61 3.85
121 122 1.101331 GCACGTAGTAGTAGGCACCT 58.899 55.000 0.00 0.00 41.61 4.00
122 123 0.813184 TGCACGTAGTAGTAGGCACC 59.187 55.000 0.00 0.00 41.61 5.01
123 124 1.202268 CCTGCACGTAGTAGTAGGCAC 60.202 57.143 0.00 0.00 41.61 5.01
124 125 1.100510 CCTGCACGTAGTAGTAGGCA 58.899 55.000 0.00 0.00 41.61 4.75
125 126 3.940723 CCTGCACGTAGTAGTAGGC 57.059 57.895 0.00 0.00 41.61 3.93
126 127 1.065701 CAGCCTGCACGTAGTAGTAGG 59.934 57.143 3.75 3.75 41.61 3.18
127 128 1.534175 GCAGCCTGCACGTAGTAGTAG 60.534 57.143 12.82 0.00 41.61 2.57
128 129 0.454600 GCAGCCTGCACGTAGTAGTA 59.545 55.000 12.82 0.00 41.61 1.82
129 130 1.215647 GCAGCCTGCACGTAGTAGT 59.784 57.895 12.82 0.00 41.61 2.73
130 131 4.094684 GCAGCCTGCACGTAGTAG 57.905 61.111 12.82 0.00 41.61 2.57
139 140 4.724602 TCGTCGTCAGCAGCCTGC 62.725 66.667 9.13 9.13 45.46 4.85
140 141 2.807045 GTCGTCGTCAGCAGCCTG 60.807 66.667 0.00 0.00 40.54 4.85
141 142 4.057428 GGTCGTCGTCAGCAGCCT 62.057 66.667 0.00 0.00 0.00 4.58
142 143 4.357947 TGGTCGTCGTCAGCAGCC 62.358 66.667 0.00 0.00 0.00 4.85
143 144 2.807045 CTGGTCGTCGTCAGCAGC 60.807 66.667 0.87 0.00 32.89 5.25
144 145 2.126307 CCTGGTCGTCGTCAGCAG 60.126 66.667 6.24 6.24 38.80 4.24
145 146 2.596338 TCCTGGTCGTCGTCAGCA 60.596 61.111 11.08 0.41 0.00 4.41
146 147 1.303799 TACTCCTGGTCGTCGTCAGC 61.304 60.000 11.08 0.00 0.00 4.26
147 148 0.727970 CTACTCCTGGTCGTCGTCAG 59.272 60.000 10.03 10.03 0.00 3.51
148 149 0.035881 ACTACTCCTGGTCGTCGTCA 59.964 55.000 0.00 0.00 0.00 4.35
149 150 1.163554 AACTACTCCTGGTCGTCGTC 58.836 55.000 0.00 0.00 0.00 4.20
150 151 1.613836 AAACTACTCCTGGTCGTCGT 58.386 50.000 0.00 0.00 0.00 4.34
151 152 2.097142 CCTAAACTACTCCTGGTCGTCG 59.903 54.545 0.00 0.00 0.00 5.12
152 153 3.350833 TCCTAAACTACTCCTGGTCGTC 58.649 50.000 0.00 0.00 0.00 4.20
153 154 3.354467 CTCCTAAACTACTCCTGGTCGT 58.646 50.000 0.00 0.00 0.00 4.34
154 155 2.688958 CCTCCTAAACTACTCCTGGTCG 59.311 54.545 0.00 0.00 0.00 4.79
155 156 3.978610 TCCTCCTAAACTACTCCTGGTC 58.021 50.000 0.00 0.00 0.00 4.02
156 157 4.548669 GATCCTCCTAAACTACTCCTGGT 58.451 47.826 0.00 0.00 0.00 4.00
157 158 3.898741 GGATCCTCCTAAACTACTCCTGG 59.101 52.174 3.84 0.00 32.53 4.45
158 159 3.898741 GGGATCCTCCTAAACTACTCCTG 59.101 52.174 12.58 0.00 36.57 3.86
159 160 3.536434 TGGGATCCTCCTAAACTACTCCT 59.464 47.826 12.58 0.00 36.57 3.69
160 161 3.898741 CTGGGATCCTCCTAAACTACTCC 59.101 52.174 12.58 0.00 36.57 3.85
161 162 3.898741 CCTGGGATCCTCCTAAACTACTC 59.101 52.174 12.58 0.00 36.57 2.59
162 163 3.930035 CCTGGGATCCTCCTAAACTACT 58.070 50.000 12.58 0.00 36.57 2.57
163 164 2.369203 GCCTGGGATCCTCCTAAACTAC 59.631 54.545 12.58 0.00 36.57 2.73
164 165 2.022428 TGCCTGGGATCCTCCTAAACTA 60.022 50.000 12.58 0.00 36.57 2.24
165 166 1.274416 TGCCTGGGATCCTCCTAAACT 60.274 52.381 12.58 0.00 36.57 2.66
166 167 1.141858 CTGCCTGGGATCCTCCTAAAC 59.858 57.143 12.58 0.00 36.57 2.01
167 168 1.511613 CTGCCTGGGATCCTCCTAAA 58.488 55.000 12.58 0.00 36.57 1.85
168 169 0.400525 CCTGCCTGGGATCCTCCTAA 60.401 60.000 12.58 0.00 36.57 2.69
169 170 1.237163 CCTGCCTGGGATCCTCCTA 59.763 63.158 12.58 0.00 36.57 2.94
170 171 2.040043 CCTGCCTGGGATCCTCCT 60.040 66.667 12.58 0.00 36.57 3.69
171 172 2.040464 TCCTGCCTGGGATCCTCC 60.040 66.667 12.58 0.00 36.20 4.30
172 173 2.146061 CCTCCTGCCTGGGATCCTC 61.146 68.421 12.58 2.25 34.56 3.71
173 174 2.040043 CCTCCTGCCTGGGATCCT 60.040 66.667 12.58 0.00 34.56 3.24
174 175 3.883549 GCCTCCTGCCTGGGATCC 61.884 72.222 1.92 1.92 34.56 3.36
200 201 5.063944 CACAAACTGGGATACTGATCGAAAG 59.936 44.000 0.00 0.00 32.28 2.62
201 202 4.935205 CACAAACTGGGATACTGATCGAAA 59.065 41.667 0.00 0.00 32.28 3.46
202 203 4.503910 CACAAACTGGGATACTGATCGAA 58.496 43.478 0.00 0.00 32.28 3.71
203 204 3.678806 GCACAAACTGGGATACTGATCGA 60.679 47.826 0.00 0.00 32.28 3.59
204 205 2.609459 GCACAAACTGGGATACTGATCG 59.391 50.000 0.00 0.00 32.28 3.69
205 206 3.878778 AGCACAAACTGGGATACTGATC 58.121 45.455 0.00 0.00 0.00 2.92
206 207 4.684485 GCTAGCACAAACTGGGATACTGAT 60.684 45.833 10.63 0.00 0.00 2.90
207 208 3.369471 GCTAGCACAAACTGGGATACTGA 60.369 47.826 10.63 0.00 0.00 3.41
208 209 2.939103 GCTAGCACAAACTGGGATACTG 59.061 50.000 10.63 0.00 0.00 2.74
209 210 2.092914 GGCTAGCACAAACTGGGATACT 60.093 50.000 18.24 0.00 0.00 2.12
210 211 2.092914 AGGCTAGCACAAACTGGGATAC 60.093 50.000 18.24 0.00 0.00 2.24
211 212 2.196595 AGGCTAGCACAAACTGGGATA 58.803 47.619 18.24 0.00 0.00 2.59
212 213 0.995024 AGGCTAGCACAAACTGGGAT 59.005 50.000 18.24 0.00 0.00 3.85
213 214 0.771127 AAGGCTAGCACAAACTGGGA 59.229 50.000 18.24 0.00 0.00 4.37
214 215 1.168714 GAAGGCTAGCACAAACTGGG 58.831 55.000 18.24 0.00 0.00 4.45
215 216 2.191128 AGAAGGCTAGCACAAACTGG 57.809 50.000 18.24 0.00 0.00 4.00
216 217 4.154918 CCTTAAGAAGGCTAGCACAAACTG 59.845 45.833 18.24 0.00 42.78 3.16
217 218 4.327680 CCTTAAGAAGGCTAGCACAAACT 58.672 43.478 18.24 0.14 42.78 2.66
218 219 4.686839 CCTTAAGAAGGCTAGCACAAAC 57.313 45.455 18.24 0.00 42.78 2.93
235 236 9.515226 AGACATAAGTTAAACAAGATTGCCTTA 57.485 29.630 0.00 0.00 32.86 2.69
236 237 8.299570 CAGACATAAGTTAAACAAGATTGCCTT 58.700 33.333 0.00 0.00 34.91 4.35
237 238 7.448469 ACAGACATAAGTTAAACAAGATTGCCT 59.552 33.333 0.00 0.00 0.00 4.75
238 239 7.593825 ACAGACATAAGTTAAACAAGATTGCC 58.406 34.615 0.00 0.00 0.00 4.52
239 240 9.543018 GTACAGACATAAGTTAAACAAGATTGC 57.457 33.333 0.00 0.00 0.00 3.56
243 244 9.692749 CTGAGTACAGACATAAGTTAAACAAGA 57.307 33.333 0.00 0.00 46.03 3.02
244 245 9.692749 TCTGAGTACAGACATAAGTTAAACAAG 57.307 33.333 0.00 0.00 46.55 3.16
260 261 5.233050 CGGAAGCAACAATATCTGAGTACAG 59.767 44.000 0.00 0.00 44.66 2.74
261 262 5.109210 CGGAAGCAACAATATCTGAGTACA 58.891 41.667 0.00 0.00 0.00 2.90
262 263 5.643339 CGGAAGCAACAATATCTGAGTAC 57.357 43.478 0.00 0.00 0.00 2.73
279 280 1.671328 TCATAGACGAGTCAGCGGAAG 59.329 52.381 5.99 0.00 35.12 3.46
280 281 1.746470 TCATAGACGAGTCAGCGGAA 58.254 50.000 5.99 0.00 35.12 4.30
281 282 1.874231 GATCATAGACGAGTCAGCGGA 59.126 52.381 5.99 0.00 35.12 5.54
282 283 1.399087 CGATCATAGACGAGTCAGCGG 60.399 57.143 5.99 0.00 35.12 5.52
283 284 1.527311 TCGATCATAGACGAGTCAGCG 59.473 52.381 5.99 0.00 34.49 5.18
284 285 3.181826 CTCGATCATAGACGAGTCAGC 57.818 52.381 5.99 0.00 46.90 4.26
290 291 2.683362 ACAAGTGCTCGATCATAGACGA 59.317 45.455 0.00 0.00 37.03 4.20
291 292 3.071786 ACAAGTGCTCGATCATAGACG 57.928 47.619 0.00 0.00 0.00 4.18
292 293 5.340932 CGAATACAAGTGCTCGATCATAGAC 59.659 44.000 0.00 0.00 33.13 2.59
293 294 5.238650 TCGAATACAAGTGCTCGATCATAGA 59.761 40.000 0.00 0.00 35.52 1.98
294 295 5.452777 TCGAATACAAGTGCTCGATCATAG 58.547 41.667 0.00 0.00 35.52 2.23
295 296 5.432885 TCGAATACAAGTGCTCGATCATA 57.567 39.130 0.00 0.00 35.52 2.15
296 297 4.294232 CTCGAATACAAGTGCTCGATCAT 58.706 43.478 8.31 0.00 39.39 2.45
297 298 3.695816 CTCGAATACAAGTGCTCGATCA 58.304 45.455 8.31 0.00 39.39 2.92
298 299 2.469516 GCTCGAATACAAGTGCTCGATC 59.530 50.000 8.31 2.80 39.39 3.69
299 300 2.464865 GCTCGAATACAAGTGCTCGAT 58.535 47.619 8.31 0.00 39.39 3.59
300 301 1.469251 GGCTCGAATACAAGTGCTCGA 60.469 52.381 7.80 7.80 37.95 4.04
301 302 0.924090 GGCTCGAATACAAGTGCTCG 59.076 55.000 0.00 0.00 0.00 5.03
302 303 1.134670 AGGGCTCGAATACAAGTGCTC 60.135 52.381 0.00 0.00 0.00 4.26
303 304 0.905357 AGGGCTCGAATACAAGTGCT 59.095 50.000 0.00 0.00 0.00 4.40
304 305 1.291132 GAGGGCTCGAATACAAGTGC 58.709 55.000 0.00 0.00 0.00 4.40
328 329 2.436417 CATCATAATACAAGCCGGGGG 58.564 52.381 2.18 0.00 0.00 5.40
329 330 1.812571 GCATCATAATACAAGCCGGGG 59.187 52.381 2.18 0.00 0.00 5.73
330 331 2.783135 AGCATCATAATACAAGCCGGG 58.217 47.619 2.18 0.00 0.00 5.73
331 332 3.565482 ACAAGCATCATAATACAAGCCGG 59.435 43.478 0.00 0.00 0.00 6.13
332 333 4.818534 ACAAGCATCATAATACAAGCCG 57.181 40.909 0.00 0.00 0.00 5.52
333 334 7.173907 AGTCATACAAGCATCATAATACAAGCC 59.826 37.037 0.00 0.00 0.00 4.35
334 335 8.092521 AGTCATACAAGCATCATAATACAAGC 57.907 34.615 0.00 0.00 0.00 4.01
368 369 8.999431 GGAAGATATCACAACACAACTCTAAAA 58.001 33.333 5.32 0.00 0.00 1.52
369 370 7.606456 GGGAAGATATCACAACACAACTCTAAA 59.394 37.037 5.32 0.00 0.00 1.85
370 371 7.103641 GGGAAGATATCACAACACAACTCTAA 58.896 38.462 5.32 0.00 0.00 2.10
371 372 6.627287 CGGGAAGATATCACAACACAACTCTA 60.627 42.308 5.32 0.00 0.00 2.43
372 373 5.491982 GGGAAGATATCACAACACAACTCT 58.508 41.667 5.32 0.00 0.00 3.24
373 374 4.330074 CGGGAAGATATCACAACACAACTC 59.670 45.833 5.32 0.00 0.00 3.01
374 375 4.253685 CGGGAAGATATCACAACACAACT 58.746 43.478 5.32 0.00 0.00 3.16
375 376 4.000988 ACGGGAAGATATCACAACACAAC 58.999 43.478 5.32 0.00 0.00 3.32
376 377 4.000325 CACGGGAAGATATCACAACACAA 59.000 43.478 5.32 0.00 0.00 3.33
377 378 3.259625 TCACGGGAAGATATCACAACACA 59.740 43.478 5.32 0.00 0.00 3.72
378 379 3.857052 TCACGGGAAGATATCACAACAC 58.143 45.455 5.32 0.00 0.00 3.32
379 380 3.513912 ACTCACGGGAAGATATCACAACA 59.486 43.478 5.32 0.00 0.00 3.33
380 381 3.865745 CACTCACGGGAAGATATCACAAC 59.134 47.826 5.32 0.00 0.00 3.32
381 382 3.678806 GCACTCACGGGAAGATATCACAA 60.679 47.826 5.32 0.00 0.00 3.33
382 383 2.159099 GCACTCACGGGAAGATATCACA 60.159 50.000 5.32 0.00 0.00 3.58
383 384 2.474816 GCACTCACGGGAAGATATCAC 58.525 52.381 5.32 0.00 0.00 3.06
384 385 1.412710 GGCACTCACGGGAAGATATCA 59.587 52.381 5.32 0.00 0.00 2.15
385 386 1.689273 AGGCACTCACGGGAAGATATC 59.311 52.381 0.00 0.00 0.00 1.63
386 387 1.414181 CAGGCACTCACGGGAAGATAT 59.586 52.381 0.00 0.00 34.60 1.63
387 388 0.824109 CAGGCACTCACGGGAAGATA 59.176 55.000 0.00 0.00 34.60 1.98
388 389 0.904865 TCAGGCACTCACGGGAAGAT 60.905 55.000 0.00 0.00 34.60 2.40
389 390 0.904865 ATCAGGCACTCACGGGAAGA 60.905 55.000 0.00 0.00 34.60 2.87
390 391 0.460987 GATCAGGCACTCACGGGAAG 60.461 60.000 0.00 0.00 34.60 3.46
391 392 0.904865 AGATCAGGCACTCACGGGAA 60.905 55.000 0.00 0.00 34.60 3.97
392 393 0.904865 AAGATCAGGCACTCACGGGA 60.905 55.000 0.00 0.00 34.60 5.14
393 394 0.742281 CAAGATCAGGCACTCACGGG 60.742 60.000 0.00 0.00 34.60 5.28
394 395 0.247460 TCAAGATCAGGCACTCACGG 59.753 55.000 0.00 0.00 34.60 4.94
395 396 2.200067 GATCAAGATCAGGCACTCACG 58.800 52.381 5.22 0.00 34.60 4.35
396 397 2.200067 CGATCAAGATCAGGCACTCAC 58.800 52.381 10.39 0.00 34.60 3.51
397 398 1.827344 ACGATCAAGATCAGGCACTCA 59.173 47.619 10.39 0.00 34.60 3.41
398 399 2.593346 ACGATCAAGATCAGGCACTC 57.407 50.000 10.39 0.00 34.60 3.51
399 400 2.760650 TGTACGATCAAGATCAGGCACT 59.239 45.455 10.39 0.00 43.88 4.40
400 401 2.860735 GTGTACGATCAAGATCAGGCAC 59.139 50.000 10.39 10.21 37.69 5.01
401 402 2.479560 CGTGTACGATCAAGATCAGGCA 60.480 50.000 10.39 2.95 43.02 4.75
402 403 2.120232 CGTGTACGATCAAGATCAGGC 58.880 52.381 10.39 0.65 43.02 4.85
403 404 3.422417 ACGTGTACGATCAAGATCAGG 57.578 47.619 11.79 0.51 43.02 3.86
404 405 4.490959 GCAAACGTGTACGATCAAGATCAG 60.491 45.833 11.79 5.82 43.02 2.90
405 406 3.366724 GCAAACGTGTACGATCAAGATCA 59.633 43.478 11.79 0.00 43.02 2.92
406 407 3.539592 CGCAAACGTGTACGATCAAGATC 60.540 47.826 11.79 0.00 43.02 2.75
407 408 2.344441 CGCAAACGTGTACGATCAAGAT 59.656 45.455 11.79 0.00 43.02 2.40
408 409 1.717113 CGCAAACGTGTACGATCAAGA 59.283 47.619 11.79 0.00 43.02 3.02
409 410 2.125168 CGCAAACGTGTACGATCAAG 57.875 50.000 11.79 0.00 43.02 3.02
422 423 5.286797 TCGTACACTAATCATACACGCAAAC 59.713 40.000 0.00 0.00 0.00 2.93
423 424 5.400703 TCGTACACTAATCATACACGCAAA 58.599 37.500 0.00 0.00 0.00 3.68
424 425 4.984205 TCGTACACTAATCATACACGCAA 58.016 39.130 0.00 0.00 0.00 4.85
425 426 4.619437 TCGTACACTAATCATACACGCA 57.381 40.909 0.00 0.00 0.00 5.24
426 427 5.684184 TCAATCGTACACTAATCATACACGC 59.316 40.000 0.00 0.00 0.00 5.34
427 428 7.673810 TTCAATCGTACACTAATCATACACG 57.326 36.000 0.00 0.00 0.00 4.49
445 446 0.931005 GTGACGCTCCCGATTCAATC 59.069 55.000 0.00 0.00 38.29 2.67
446 447 0.249120 TGTGACGCTCCCGATTCAAT 59.751 50.000 0.00 0.00 38.29 2.57
447 448 0.389817 CTGTGACGCTCCCGATTCAA 60.390 55.000 0.00 0.00 38.29 2.69
448 449 1.215382 CTGTGACGCTCCCGATTCA 59.785 57.895 0.00 0.00 38.29 2.57
449 450 1.519455 CCTGTGACGCTCCCGATTC 60.519 63.158 0.00 0.00 38.29 2.52
450 451 1.827399 AACCTGTGACGCTCCCGATT 61.827 55.000 0.00 0.00 38.29 3.34
451 452 1.827399 AAACCTGTGACGCTCCCGAT 61.827 55.000 0.00 0.00 38.29 4.18
452 453 1.180456 TAAACCTGTGACGCTCCCGA 61.180 55.000 0.00 0.00 38.29 5.14
453 454 0.736325 CTAAACCTGTGACGCTCCCG 60.736 60.000 0.00 0.00 41.14 5.14
454 455 0.320697 ACTAAACCTGTGACGCTCCC 59.679 55.000 0.00 0.00 0.00 4.30
455 456 1.000506 TCACTAAACCTGTGACGCTCC 59.999 52.381 0.00 0.00 39.23 4.70
456 457 2.433868 TCACTAAACCTGTGACGCTC 57.566 50.000 0.00 0.00 39.23 5.03
461 462 4.624015 CCTTTACGTCACTAAACCTGTGA 58.376 43.478 0.00 0.00 41.48 3.58
462 463 3.185797 GCCTTTACGTCACTAAACCTGTG 59.814 47.826 0.00 0.00 36.82 3.66
463 464 3.070590 AGCCTTTACGTCACTAAACCTGT 59.929 43.478 0.00 0.00 0.00 4.00
464 465 3.660865 AGCCTTTACGTCACTAAACCTG 58.339 45.455 0.00 0.00 0.00 4.00
465 466 4.281688 TGTAGCCTTTACGTCACTAAACCT 59.718 41.667 0.00 0.00 0.00 3.50
466 467 4.559153 TGTAGCCTTTACGTCACTAAACC 58.441 43.478 0.00 0.00 0.00 3.27
467 468 6.366877 TGATTGTAGCCTTTACGTCACTAAAC 59.633 38.462 0.00 0.00 0.00 2.01
468 469 6.366877 GTGATTGTAGCCTTTACGTCACTAAA 59.633 38.462 0.00 0.00 35.11 1.85
469 470 5.865552 GTGATTGTAGCCTTTACGTCACTAA 59.134 40.000 0.00 0.00 35.11 2.24
470 471 5.047872 TGTGATTGTAGCCTTTACGTCACTA 60.048 40.000 16.44 0.00 36.99 2.74
471 472 4.243270 GTGATTGTAGCCTTTACGTCACT 58.757 43.478 0.00 0.00 35.11 3.41
472 473 3.991773 TGTGATTGTAGCCTTTACGTCAC 59.008 43.478 0.00 12.08 36.79 3.67
473 474 4.242475 CTGTGATTGTAGCCTTTACGTCA 58.758 43.478 0.00 0.00 0.00 4.35
474 475 3.617263 CCTGTGATTGTAGCCTTTACGTC 59.383 47.826 0.00 0.00 0.00 4.34
475 476 3.007614 ACCTGTGATTGTAGCCTTTACGT 59.992 43.478 0.00 0.00 0.00 3.57
476 477 3.370978 CACCTGTGATTGTAGCCTTTACG 59.629 47.826 0.00 0.00 0.00 3.18
477 478 3.689649 CCACCTGTGATTGTAGCCTTTAC 59.310 47.826 0.00 0.00 0.00 2.01
478 479 3.872240 GCCACCTGTGATTGTAGCCTTTA 60.872 47.826 0.00 0.00 0.00 1.85
479 480 2.795329 CCACCTGTGATTGTAGCCTTT 58.205 47.619 0.00 0.00 0.00 3.11
480 481 1.614317 GCCACCTGTGATTGTAGCCTT 60.614 52.381 0.00 0.00 0.00 4.35
481 482 0.035056 GCCACCTGTGATTGTAGCCT 60.035 55.000 0.00 0.00 0.00 4.58
482 483 1.032114 GGCCACCTGTGATTGTAGCC 61.032 60.000 0.00 0.00 0.00 3.93
483 484 1.032114 GGGCCACCTGTGATTGTAGC 61.032 60.000 4.39 0.00 0.00 3.58
484 485 0.327924 TGGGCCACCTGTGATTGTAG 59.672 55.000 0.00 0.00 37.76 2.74
485 486 0.774276 TTGGGCCACCTGTGATTGTA 59.226 50.000 5.23 0.00 37.76 2.41
486 487 0.827507 GTTGGGCCACCTGTGATTGT 60.828 55.000 5.23 0.00 37.76 2.71
487 488 0.827089 TGTTGGGCCACCTGTGATTG 60.827 55.000 5.23 0.00 37.76 2.67
488 489 0.105760 TTGTTGGGCCACCTGTGATT 60.106 50.000 5.23 0.00 37.76 2.57
489 490 0.540365 CTTGTTGGGCCACCTGTGAT 60.540 55.000 5.23 0.00 37.76 3.06
490 491 1.152777 CTTGTTGGGCCACCTGTGA 60.153 57.895 5.23 0.00 37.76 3.58
491 492 0.179004 TACTTGTTGGGCCACCTGTG 60.179 55.000 5.23 0.00 37.76 3.66
492 493 0.110486 CTACTTGTTGGGCCACCTGT 59.890 55.000 5.23 5.58 37.76 4.00
493 494 0.609131 CCTACTTGTTGGGCCACCTG 60.609 60.000 5.23 0.00 37.76 4.00
494 495 1.767692 CCTACTTGTTGGGCCACCT 59.232 57.895 5.23 0.00 37.76 4.00
495 496 1.977009 GCCTACTTGTTGGGCCACC 60.977 63.158 5.23 0.00 46.38 4.61
496 497 3.681473 GCCTACTTGTTGGGCCAC 58.319 61.111 5.23 1.85 46.38 5.01
500 501 2.618045 CCAGTTAGGCCTACTTGTTGGG 60.618 54.545 13.46 6.63 0.00 4.12
501 502 2.039879 ACCAGTTAGGCCTACTTGTTGG 59.960 50.000 13.46 16.90 43.14 3.77
502 503 3.244422 TGACCAGTTAGGCCTACTTGTTG 60.244 47.826 13.46 6.58 43.14 3.33
503 504 2.976882 TGACCAGTTAGGCCTACTTGTT 59.023 45.455 13.46 1.85 43.14 2.83
504 505 2.616524 TGACCAGTTAGGCCTACTTGT 58.383 47.619 13.46 14.28 43.14 3.16
505 506 3.695830 TTGACCAGTTAGGCCTACTTG 57.304 47.619 13.46 13.48 43.14 3.16
506 507 3.587506 ACATTGACCAGTTAGGCCTACTT 59.412 43.478 13.46 0.00 43.14 2.24
507 508 3.182152 ACATTGACCAGTTAGGCCTACT 58.818 45.455 13.46 10.44 43.14 2.57
508 509 3.629142 ACATTGACCAGTTAGGCCTAC 57.371 47.619 13.46 8.11 43.14 3.18
509 510 4.650972 AAACATTGACCAGTTAGGCCTA 57.349 40.909 8.91 8.91 43.14 3.93
510 511 3.525800 AAACATTGACCAGTTAGGCCT 57.474 42.857 11.78 11.78 43.14 5.19
511 512 4.076394 TGTAAACATTGACCAGTTAGGCC 58.924 43.478 0.00 0.00 43.14 5.19
512 513 5.414454 TGATGTAAACATTGACCAGTTAGGC 59.586 40.000 0.00 0.00 37.57 3.93
513 514 7.630242 ATGATGTAAACATTGACCAGTTAGG 57.370 36.000 0.00 0.00 39.16 2.69
515 516 9.679661 ACATATGATGTAAACATTGACCAGTTA 57.320 29.630 10.38 0.00 42.78 2.24
516 517 8.461222 CACATATGATGTAAACATTGACCAGTT 58.539 33.333 10.38 0.00 42.70 3.16
517 518 7.415541 GCACATATGATGTAAACATTGACCAGT 60.416 37.037 10.38 0.00 42.70 4.00
518 519 6.914215 GCACATATGATGTAAACATTGACCAG 59.086 38.462 10.38 0.00 42.70 4.00
519 520 6.376581 TGCACATATGATGTAAACATTGACCA 59.623 34.615 10.38 0.00 42.70 4.02
520 521 6.794374 TGCACATATGATGTAAACATTGACC 58.206 36.000 10.38 0.00 42.70 4.02
521 522 8.748582 CATTGCACATATGATGTAAACATTGAC 58.251 33.333 10.38 0.00 42.70 3.18
522 523 7.921745 CCATTGCACATATGATGTAAACATTGA 59.078 33.333 10.38 0.00 42.70 2.57
523 524 7.306925 GCCATTGCACATATGATGTAAACATTG 60.307 37.037 10.38 5.43 42.70 2.82
524 525 6.702723 GCCATTGCACATATGATGTAAACATT 59.297 34.615 10.38 0.00 42.70 2.71
525 526 6.041182 AGCCATTGCACATATGATGTAAACAT 59.959 34.615 10.38 0.00 42.70 2.71
526 527 5.360429 AGCCATTGCACATATGATGTAAACA 59.640 36.000 10.38 0.00 42.70 2.83
527 528 5.835257 AGCCATTGCACATATGATGTAAAC 58.165 37.500 10.38 4.91 42.70 2.01
528 529 5.829391 AGAGCCATTGCACATATGATGTAAA 59.171 36.000 10.38 4.38 42.70 2.01
529 530 5.379187 AGAGCCATTGCACATATGATGTAA 58.621 37.500 10.38 9.99 42.70 2.41
530 531 4.976864 AGAGCCATTGCACATATGATGTA 58.023 39.130 10.38 0.96 42.70 2.29
531 532 3.828921 AGAGCCATTGCACATATGATGT 58.171 40.909 10.38 0.00 46.22 3.06
532 533 4.848562 AAGAGCCATTGCACATATGATG 57.151 40.909 10.38 5.38 41.13 3.07
533 534 5.417894 CCATAAGAGCCATTGCACATATGAT 59.582 40.000 10.38 0.00 40.12 2.45
534 535 4.763279 CCATAAGAGCCATTGCACATATGA 59.237 41.667 10.38 0.00 40.12 2.15
535 536 4.617530 GCCATAAGAGCCATTGCACATATG 60.618 45.833 0.00 0.00 38.58 1.78
536 537 3.508793 GCCATAAGAGCCATTGCACATAT 59.491 43.478 0.00 0.00 41.13 1.78
562 563 3.829886 ATCACCACATTTGTGCTAACG 57.170 42.857 5.15 0.00 44.34 3.18
610 612 7.829706 AGACTTAAAGAAAACTTCAGGTGAGTT 59.170 33.333 0.00 0.00 0.00 3.01
747 749 2.203280 CACACGGCCTTTGGGTGA 60.203 61.111 13.82 0.00 35.68 4.02
766 768 1.210722 GGAGAACCTAGGCCTCAAAGG 59.789 57.143 24.75 17.26 38.80 3.11
767 769 2.093235 CAGGAGAACCTAGGCCTCAAAG 60.093 54.545 24.75 0.00 45.94 2.77
768 770 1.909302 CAGGAGAACCTAGGCCTCAAA 59.091 52.381 24.75 0.00 45.94 2.69
769 771 1.573108 CAGGAGAACCTAGGCCTCAA 58.427 55.000 24.75 0.00 45.94 3.02
770 772 0.325671 CCAGGAGAACCTAGGCCTCA 60.326 60.000 24.75 0.00 45.94 3.86
771 773 0.325765 ACCAGGAGAACCTAGGCCTC 60.326 60.000 9.68 18.69 45.94 4.70
772 774 0.119358 AACCAGGAGAACCTAGGCCT 59.881 55.000 11.78 11.78 45.94 5.19
773 775 0.253327 CAACCAGGAGAACCTAGGCC 59.747 60.000 9.30 1.20 45.94 5.19
867 878 3.869272 CCAATGACGCTGCTCCGC 61.869 66.667 0.00 0.00 0.00 5.54
962 975 1.538075 CCAACCCAATACGGTCACAAC 59.462 52.381 0.00 0.00 33.98 3.32
1007 1020 3.381590 CGTTACTGATCTCCTCATCACCA 59.618 47.826 0.00 0.00 32.10 4.17
1032 1045 1.904032 GCTCTGGCTCAGGCTAAGT 59.096 57.895 0.00 0.00 38.73 2.24
1282 1295 2.664851 CGACAGGAACCGCAGCAA 60.665 61.111 0.00 0.00 0.00 3.91
1392 1405 1.472480 CCATCTCCAACGGCGATTTTT 59.528 47.619 16.62 0.00 0.00 1.94
1455 1468 1.444553 GACAAGAGCCTCGACCACG 60.445 63.158 0.00 0.00 41.26 4.94
1494 1507 2.810400 GCCTCTGAACAACCTAACAGCA 60.810 50.000 0.00 0.00 0.00 4.41
1626 1639 4.988598 ACAACACCCTGCGCCTCG 62.989 66.667 4.18 0.00 0.00 4.63
1827 1840 7.967303 GCAGAAGGATTAAACTTGAGATTTCTG 59.033 37.037 0.00 0.00 40.22 3.02
1833 1846 3.684788 GCGCAGAAGGATTAAACTTGAGA 59.315 43.478 0.30 0.00 0.00 3.27
1905 1918 0.343372 AGCTGGAGGAATCAGGGGTA 59.657 55.000 0.00 0.00 33.16 3.69
1917 1930 5.936956 AGAGAGTAAAATGTTGAAGCTGGAG 59.063 40.000 0.00 0.00 0.00 3.86
1932 1945 4.628074 CTCGTCCCAAACAAGAGAGTAAA 58.372 43.478 0.00 0.00 0.00 2.01
1938 1951 1.532868 CTTGCTCGTCCCAAACAAGAG 59.467 52.381 0.00 0.00 40.06 2.85
1971 1984 8.169977 TCATCAAATAGAGGATTTTGTATGCC 57.830 34.615 0.00 0.00 35.45 4.40
2169 2182 5.558818 AGAGCATGATCAACTTTCTCTGTT 58.441 37.500 14.38 0.00 0.00 3.16
2204 2217 7.176690 CCACTAACCCACAACTCTTCATAATTT 59.823 37.037 0.00 0.00 0.00 1.82
2222 2235 7.050970 TCATATGTATGAGTGTCCACTAACC 57.949 40.000 1.90 0.00 42.66 2.85
2273 2286 2.380084 TGCAACCTCGAATCTACCAC 57.620 50.000 0.00 0.00 0.00 4.16
2274 2287 3.334691 CTTTGCAACCTCGAATCTACCA 58.665 45.455 0.00 0.00 0.00 3.25
2280 2293 2.568623 ACTCCTTTGCAACCTCGAAT 57.431 45.000 0.00 0.00 0.00 3.34
2435 2448 3.003480 GCAGCAGTACCCTTCTTAGTTG 58.997 50.000 0.00 0.00 0.00 3.16
2523 2536 7.251704 CAAATATGCTCGGATAAGTTGACTT 57.748 36.000 1.60 1.60 39.85 3.01
2555 2568 4.586841 TCACATAGTTCCAAACCAAAAGGG 59.413 41.667 0.00 0.00 44.81 3.95
2558 2571 6.968263 TCATCACATAGTTCCAAACCAAAA 57.032 33.333 0.00 0.00 0.00 2.44
2607 2628 9.434559 GTTTGACAACTGATTACTTGAGTTTAC 57.565 33.333 0.00 0.00 0.00 2.01
2617 2638 6.438763 CAGGAAAGGTTTGACAACTGATTAC 58.561 40.000 0.00 0.00 32.90 1.89
2633 2654 2.290896 TGCATGTAGGTTCCAGGAAAGG 60.291 50.000 2.45 0.00 0.00 3.11
2642 2663 7.582667 AAATAGGGTAATTGCATGTAGGTTC 57.417 36.000 0.00 0.00 0.00 3.62
2653 2674 8.630037 GGACTCCACATAAAAATAGGGTAATTG 58.370 37.037 0.00 0.00 0.00 2.32
2676 2697 3.314541 AACAGTAGTCATGGAACGGAC 57.685 47.619 0.00 0.00 35.85 4.79
2677 2698 4.345859 AAAACAGTAGTCATGGAACGGA 57.654 40.909 0.00 0.00 0.00 4.69
2678 2699 6.737254 ATTAAAACAGTAGTCATGGAACGG 57.263 37.500 0.00 0.00 0.00 4.44
2679 2700 9.755064 CTTTATTAAAACAGTAGTCATGGAACG 57.245 33.333 0.00 0.00 0.00 3.95
2766 2791 8.589338 CAAACTAGAGTACTATAATGGGCAGAT 58.411 37.037 0.00 0.00 0.00 2.90
2768 2793 6.647067 GCAAACTAGAGTACTATAATGGGCAG 59.353 42.308 0.00 0.00 0.00 4.85
2769 2794 6.099125 TGCAAACTAGAGTACTATAATGGGCA 59.901 38.462 0.00 2.61 0.00 5.36
2770 2795 6.522054 TGCAAACTAGAGTACTATAATGGGC 58.478 40.000 0.00 0.00 0.00 5.36
2771 2796 8.958119 TTTGCAAACTAGAGTACTATAATGGG 57.042 34.615 8.05 0.00 0.00 4.00
2783 2809 4.919754 GCCAGTCATTTTTGCAAACTAGAG 59.080 41.667 12.39 0.79 0.00 2.43
2784 2810 4.340666 TGCCAGTCATTTTTGCAAACTAGA 59.659 37.500 12.39 6.94 0.00 2.43
2785 2811 4.445385 GTGCCAGTCATTTTTGCAAACTAG 59.555 41.667 12.39 4.50 33.11 2.57
2786 2812 4.099266 AGTGCCAGTCATTTTTGCAAACTA 59.901 37.500 12.39 3.33 33.11 2.24
2787 2813 3.118665 AGTGCCAGTCATTTTTGCAAACT 60.119 39.130 12.39 2.75 33.11 2.66
2820 2846 1.562783 AGGAGGAGAGTTGCTACACC 58.437 55.000 0.13 1.45 38.40 4.16
2823 2849 4.023536 CGAGATAAGGAGGAGAGTTGCTAC 60.024 50.000 0.00 0.00 0.00 3.58
2832 2858 5.130350 AGAGAACTTCGAGATAAGGAGGAG 58.870 45.833 0.00 0.00 0.00 3.69
2833 2859 5.118729 AGAGAACTTCGAGATAAGGAGGA 57.881 43.478 0.00 0.00 0.00 3.71
2877 2910 7.649057 AGGTCAGCAAACAGATAAAAACTAAC 58.351 34.615 0.00 0.00 0.00 2.34
2887 2920 1.272147 GGGGAAGGTCAGCAAACAGAT 60.272 52.381 0.00 0.00 0.00 2.90
2888 2921 0.110486 GGGGAAGGTCAGCAAACAGA 59.890 55.000 0.00 0.00 0.00 3.41
2889 2922 0.111253 AGGGGAAGGTCAGCAAACAG 59.889 55.000 0.00 0.00 0.00 3.16
2908 2942 7.987649 ACTGTAACGGTGACAATAAAGAAAAA 58.012 30.769 0.00 0.00 0.00 1.94
2925 2959 4.201773 TGCACTCAAAACAGAACTGTAACG 60.202 41.667 7.90 0.44 44.13 3.18
2942 2976 5.048782 TGTCCATAAAGTTCAATGTGCACTC 60.049 40.000 19.41 0.00 0.00 3.51
2945 2979 5.981088 ATGTCCATAAAGTTCAATGTGCA 57.019 34.783 0.00 0.00 0.00 4.57
2952 2986 7.675161 TCCTCAGATATGTCCATAAAGTTCA 57.325 36.000 0.00 0.00 0.00 3.18
2972 3006 4.202151 ACCAAAATCTTGTTGTTGCTCCTC 60.202 41.667 0.00 0.00 0.00 3.71
3044 3078 9.984190 CAGGTAAGGGAGAAATAGAAACTATAC 57.016 37.037 0.00 0.00 0.00 1.47
3054 3088 9.681062 CTATTGAAAACAGGTAAGGGAGAAATA 57.319 33.333 0.00 0.00 0.00 1.40
3055 3089 8.170730 ACTATTGAAAACAGGTAAGGGAGAAAT 58.829 33.333 0.00 0.00 0.00 2.17
3114 3148 3.119463 CGCATTTTCGTCCAACAAATGTC 59.881 43.478 5.90 0.00 39.24 3.06
3150 3184 5.823570 TGGGTGTCGATACTTCTTTGAAAAA 59.176 36.000 12.29 0.00 0.00 1.94
3175 3209 2.545946 GAGTCAACTTTGAGTCCAGCAC 59.454 50.000 13.74 0.00 46.84 4.40
3190 3224 6.017440 ACAGCATTTAAGCGTTTTAGAGTCAA 60.017 34.615 0.00 0.00 40.15 3.18
3315 3349 6.914654 TGGTACCAATACGGCAATACTATA 57.085 37.500 13.60 0.00 39.03 1.31
3325 3359 7.153217 AGAAAGAAATTTGGTACCAATACGG 57.847 36.000 27.57 0.00 42.50 4.02
3429 3463 8.774546 ATCACTCTATGGTTCTATCTTCTTCA 57.225 34.615 0.00 0.00 0.00 3.02
3432 3466 8.004215 ACAGATCACTCTATGGTTCTATCTTCT 58.996 37.037 0.00 0.00 0.00 2.85
3433 3467 8.177119 ACAGATCACTCTATGGTTCTATCTTC 57.823 38.462 0.00 0.00 0.00 2.87
3435 3469 8.444783 ACTACAGATCACTCTATGGTTCTATCT 58.555 37.037 0.00 0.00 0.00 1.98
3443 3477 4.576873 ACGTGACTACAGATCACTCTATGG 59.423 45.833 0.00 0.00 43.60 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.