Multiple sequence alignment - TraesCS3D01G379300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G379300 chr3D 100.000 7789 0 0 1 7789 496142122 496149910 0.000000e+00 14384.0
1 TraesCS3D01G379300 chr3D 84.306 720 93 9 5664 6368 496121536 496122250 0.000000e+00 686.0
2 TraesCS3D01G379300 chr3D 83.817 655 65 25 933 1558 496116120 496116762 1.130000e-162 584.0
3 TraesCS3D01G379300 chr3D 78.093 881 137 38 4780 5616 496120648 496121516 2.510000e-139 507.0
4 TraesCS3D01G379300 chr3D 86.199 413 38 11 1 398 84506928 84507336 5.580000e-116 429.0
5 TraesCS3D01G379300 chr3D 81.019 569 70 22 4049 4612 496119733 496120268 1.210000e-112 418.0
6 TraesCS3D01G379300 chr3D 81.051 533 80 15 1615 2130 496116858 496117386 9.410000e-109 405.0
7 TraesCS3D01G379300 chr3D 85.867 375 44 7 3139 3506 496118303 496118675 2.640000e-104 390.0
8 TraesCS3D01G379300 chr3D 84.658 365 33 14 7429 7789 496368286 496368631 7.480000e-90 342.0
9 TraesCS3D01G379300 chr3D 92.462 199 15 0 3701 3899 496119443 496119641 1.280000e-72 285.0
10 TraesCS3D01G379300 chr3D 89.268 205 16 3 7424 7627 496184509 496184708 1.300000e-62 252.0
11 TraesCS3D01G379300 chr3D 86.413 184 22 3 2608 2789 496117731 496117913 1.710000e-46 198.0
12 TraesCS3D01G379300 chr3A 91.928 3283 154 59 696 3922 635477704 635480931 0.000000e+00 4492.0
13 TraesCS3D01G379300 chr3A 92.701 2192 117 13 5635 7789 635483778 635485963 0.000000e+00 3121.0
14 TraesCS3D01G379300 chr3A 92.822 1212 46 20 4420 5616 635482606 635483791 0.000000e+00 1718.0
15 TraesCS3D01G379300 chr3A 80.645 1209 154 51 989 2142 635383696 635384879 0.000000e+00 863.0
16 TraesCS3D01G379300 chr3A 93.737 495 18 3 3927 4421 635481865 635482346 0.000000e+00 730.0
17 TraesCS3D01G379300 chr3A 84.064 753 96 11 5635 6368 635388940 635389687 0.000000e+00 704.0
18 TraesCS3D01G379300 chr3A 84.559 408 49 12 2 400 716399764 716399362 7.330000e-105 392.0
19 TraesCS3D01G379300 chr3A 84.115 384 51 8 3131 3506 635385943 635386324 5.740000e-96 363.0
20 TraesCS3D01G379300 chr3A 85.057 348 35 6 7432 7779 635517102 635517432 9.680000e-89 339.0
21 TraesCS3D01G379300 chr3A 82.507 343 55 3 6030 6368 635392005 635392346 5.910000e-76 296.0
22 TraesCS3D01G379300 chr3A 91.457 199 17 0 3701 3899 635386599 635386797 2.770000e-69 274.0
23 TraesCS3D01G379300 chr3A 92.593 135 10 0 2608 2742 635385384 635385518 2.220000e-45 195.0
24 TraesCS3D01G379300 chr3A 86.747 166 7 7 456 607 635477481 635477645 3.740000e-38 171.0
25 TraesCS3D01G379300 chr3B 96.385 1466 50 3 2965 4428 655305696 655307160 0.000000e+00 2410.0
26 TraesCS3D01G379300 chr3B 95.432 1204 48 3 5635 6831 655308656 655309859 0.000000e+00 1912.0
27 TraesCS3D01G379300 chr3B 85.283 1556 107 48 765 2255 655303298 655304796 0.000000e+00 1493.0
28 TraesCS3D01G379300 chr3B 92.024 840 39 8 4798 5616 655307837 655308669 0.000000e+00 1155.0
29 TraesCS3D01G379300 chr3B 89.816 923 55 15 6893 7789 655309859 655310768 0.000000e+00 1147.0
30 TraesCS3D01G379300 chr3B 80.667 1200 136 56 987 2142 655291399 655292546 0.000000e+00 843.0
31 TraesCS3D01G379300 chr3B 83.929 728 93 14 5657 6368 655295998 655296717 0.000000e+00 675.0
32 TraesCS3D01G379300 chr3B 85.886 666 53 21 2401 3033 655305058 655305715 0.000000e+00 671.0
33 TraesCS3D01G379300 chr3B 96.783 373 10 2 4427 4799 655307311 655307681 8.580000e-174 621.0
34 TraesCS3D01G379300 chr3B 77.983 922 129 48 4749 5615 655295082 655295984 1.940000e-140 510.0
35 TraesCS3D01G379300 chr3B 84.896 384 48 7 3128 3506 655293387 655293765 5.700000e-101 379.0
36 TraesCS3D01G379300 chr3B 86.319 307 28 8 7485 7789 655342047 655342341 9.750000e-84 322.0
37 TraesCS3D01G379300 chr3B 84.615 312 41 3 3701 4005 655293854 655294165 3.530000e-78 303.0
38 TraesCS3D01G379300 chr3B 79.442 394 53 20 2616 2984 655292848 655293238 3.610000e-63 254.0
39 TraesCS3D01G379300 chr3B 80.982 163 14 5 7169 7321 655355897 655356052 6.390000e-21 113.0
40 TraesCS3D01G379300 chr6B 92.876 379 24 2 6580 6956 78017972 78018349 1.480000e-151 547.0
41 TraesCS3D01G379300 chr6B 92.876 379 24 2 6580 6956 78049157 78049534 1.480000e-151 547.0
42 TraesCS3D01G379300 chr6B 92.876 379 24 2 6580 6956 78101721 78102098 1.480000e-151 547.0
43 TraesCS3D01G379300 chr6B 92.876 379 24 2 6580 6956 78120856 78121233 1.480000e-151 547.0
44 TraesCS3D01G379300 chr6B 92.612 379 25 2 6580 6956 77914456 77914833 6.870000e-150 542.0
45 TraesCS3D01G379300 chr6B 92.612 379 25 2 6580 6956 78139996 78140373 6.870000e-150 542.0
46 TraesCS3D01G379300 chr6B 92.084 379 27 2 6580 6956 78080006 78080383 1.490000e-146 531.0
47 TraesCS3D01G379300 chr6B 90.816 196 11 4 6991 7181 77914833 77915026 1.000000e-63 255.0
48 TraesCS3D01G379300 chr6B 90.306 196 12 4 6991 7181 78018349 78018542 4.670000e-62 250.0
49 TraesCS3D01G379300 chr6B 90.306 196 12 4 6991 7181 78080383 78080576 4.670000e-62 250.0
50 TraesCS3D01G379300 chr6B 90.306 196 12 4 6991 7181 78102098 78102291 4.670000e-62 250.0
51 TraesCS3D01G379300 chr6B 90.306 196 12 4 6991 7181 78121233 78121426 4.670000e-62 250.0
52 TraesCS3D01G379300 chr6B 90.306 196 12 4 6991 7181 78140373 78140566 4.670000e-62 250.0
53 TraesCS3D01G379300 chr6B 89.796 196 13 4 6991 7181 78049534 78049727 2.170000e-60 244.0
54 TraesCS3D01G379300 chr6B 83.168 101 13 4 1246 1344 289532265 289532167 1.080000e-13 89.8
55 TraesCS3D01G379300 chr5B 84.015 538 55 16 1484 2006 6249759 6249238 9.080000e-134 488.0
56 TraesCS3D01G379300 chr5B 86.376 367 22 11 2223 2588 6249213 6248874 7.380000e-100 375.0
57 TraesCS3D01G379300 chr2D 86.123 454 42 10 1 433 513913407 513912954 3.290000e-128 470.0
58 TraesCS3D01G379300 chr5D 85.683 454 42 12 1 435 216062411 216062860 2.560000e-124 457.0
59 TraesCS3D01G379300 chr5D 86.620 426 42 11 15 431 558577486 558577067 2.560000e-124 457.0
60 TraesCS3D01G379300 chr5D 84.783 460 49 9 1 439 458628423 458628882 7.170000e-120 442.0
61 TraesCS3D01G379300 chr5D 86.199 413 39 13 1 399 225854645 225854237 1.550000e-116 431.0
62 TraesCS3D01G379300 chr4D 84.956 452 42 14 1 433 72715174 72714730 1.200000e-117 435.0
63 TraesCS3D01G379300 chr1D 89.244 344 29 6 1 342 202475758 202475421 2.600000e-114 424.0
64 TraesCS3D01G379300 chr1A 82.963 135 13 1 6182 6316 96359137 96359261 6.390000e-21 113.0
65 TraesCS3D01G379300 chr6D 83.168 101 13 4 1246 1344 159021830 159021732 1.080000e-13 89.8
66 TraesCS3D01G379300 chr6A 83.168 101 13 4 1246 1344 217268736 217268638 1.080000e-13 89.8
67 TraesCS3D01G379300 chr7A 82.609 92 11 5 1255 1344 538343081 538343169 8.380000e-10 76.8
68 TraesCS3D01G379300 chr7B 100.000 31 0 0 7323 7353 374312734 374312704 3.040000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G379300 chr3D 496142122 496149910 7788 False 14384.000000 14384 100.000000 1 7789 1 chr3D.!!$F2 7788
1 TraesCS3D01G379300 chr3D 496116120 496122250 6130 False 434.125000 686 84.128500 933 6368 8 chr3D.!!$F5 5435
2 TraesCS3D01G379300 chr3A 635477481 635485963 8482 False 2046.400000 4492 91.587000 456 7789 5 chr3A.!!$F3 7333
3 TraesCS3D01G379300 chr3A 635383696 635392346 8650 False 449.166667 863 85.896833 989 6368 6 chr3A.!!$F2 5379
4 TraesCS3D01G379300 chr3B 655303298 655310768 7470 False 1344.142857 2410 91.658429 765 7789 7 chr3B.!!$F4 7024
5 TraesCS3D01G379300 chr3B 655291399 655296717 5318 False 494.000000 843 81.922000 987 6368 6 chr3B.!!$F3 5381
6 TraesCS3D01G379300 chr6B 77914456 77915026 570 False 398.500000 542 91.714000 6580 7181 2 chr6B.!!$F1 601
7 TraesCS3D01G379300 chr6B 78017972 78018542 570 False 398.500000 547 91.591000 6580 7181 2 chr6B.!!$F2 601
8 TraesCS3D01G379300 chr6B 78101721 78102291 570 False 398.500000 547 91.591000 6580 7181 2 chr6B.!!$F5 601
9 TraesCS3D01G379300 chr6B 78120856 78121426 570 False 398.500000 547 91.591000 6580 7181 2 chr6B.!!$F6 601
10 TraesCS3D01G379300 chr6B 78139996 78140566 570 False 396.000000 542 91.459000 6580 7181 2 chr6B.!!$F7 601
11 TraesCS3D01G379300 chr6B 78049157 78049727 570 False 395.500000 547 91.336000 6580 7181 2 chr6B.!!$F3 601
12 TraesCS3D01G379300 chr6B 78080006 78080576 570 False 390.500000 531 91.195000 6580 7181 2 chr6B.!!$F4 601
13 TraesCS3D01G379300 chr5B 6248874 6249759 885 True 431.500000 488 85.195500 1484 2588 2 chr5B.!!$R1 1104

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
326 327 0.033503 ATTTGAACCGGGGATGGGTC 60.034 55.000 6.32 0.0 46.46 4.46 F
357 358 0.167251 AAAAGTCCGTTTATGCCGCG 59.833 50.000 0.00 0.0 0.00 6.46 F
381 382 0.181350 GGGCCGTCTGATTCTTCCAT 59.819 55.000 0.00 0.0 0.00 3.41 F
404 405 0.322322 ACCCAAACGGACGCATTAGA 59.678 50.000 0.00 0.0 34.64 2.10 F
693 720 0.394762 GCCCACAATCTGATGGCTGA 60.395 55.000 8.93 0.0 35.67 4.26 F
2256 2466 0.244721 GACCAGCCCAACTGCAATTC 59.755 55.000 0.00 0.0 45.78 2.17 F
2604 3191 1.314730 GACGAGTTCTTTTGGGGCAA 58.685 50.000 0.00 0.0 0.00 4.52 F
2606 3193 1.681264 ACGAGTTCTTTTGGGGCAAAG 59.319 47.619 0.00 0.0 34.72 2.77 F
4414 6705 1.574263 AAGAGGGGAGGTCTTAGTGC 58.426 55.000 0.00 0.0 32.29 4.40 F
5129 8333 2.265683 CGGCCCTTCGTTAACTTCTAC 58.734 52.381 3.71 0.0 0.00 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1628 1794 0.178964 CCCCTGAAACCCACACACAT 60.179 55.000 0.00 0.0 0.00 3.21 R
1751 1925 0.391228 ATCACCCAAACCGGCAAAAC 59.609 50.000 0.00 0.0 0.00 2.43 R
1755 1929 0.609681 GGTTATCACCCAAACCGGCA 60.610 55.000 0.00 0.0 37.03 5.69 R
1756 1930 2.186155 GGTTATCACCCAAACCGGC 58.814 57.895 0.00 0.0 37.03 6.13 R
2439 2814 1.002134 TAAGGGGCAAGAGCAGCAC 60.002 57.895 0.00 0.0 44.61 4.40 R
3368 4084 3.237746 TCAGATGTGCCCATTTTGGAAA 58.762 40.909 0.00 0.0 40.96 3.13 R
4086 6356 6.554334 AGAGAGAGTCGTGAGCTAAATATC 57.446 41.667 0.00 0.0 0.00 1.63 R
4638 7326 4.676924 GCTGAATTAGAACTGCACAAACAC 59.323 41.667 0.00 0.0 0.00 3.32 R
6354 9618 0.031585 CGGATAAGAATCGGGTGCGA 59.968 55.000 0.00 0.0 32.44 5.10 R
6975 10388 0.464193 CACCATGGCATCGTCCATCA 60.464 55.000 13.04 0.0 44.63 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.191908 CGGATCCGCCCCAAATCA 59.808 61.111 23.37 0.00 0.00 2.57
18 19 1.893808 CGGATCCGCCCCAAATCAG 60.894 63.158 23.37 0.00 0.00 2.90
19 20 1.529244 GGATCCGCCCCAAATCAGG 60.529 63.158 0.00 0.00 0.00 3.86
20 21 2.123726 ATCCGCCCCAAATCAGGC 60.124 61.111 0.00 0.00 46.17 4.85
24 25 3.140814 GCCCCAAATCAGGCCGAC 61.141 66.667 0.00 0.00 43.76 4.79
25 26 2.824041 CCCCAAATCAGGCCGACG 60.824 66.667 0.00 0.00 0.00 5.12
26 27 2.824041 CCCAAATCAGGCCGACGG 60.824 66.667 10.29 10.29 0.00 4.79
27 28 2.824041 CCAAATCAGGCCGACGGG 60.824 66.667 17.22 0.00 0.00 5.28
28 29 2.046314 CAAATCAGGCCGACGGGT 60.046 61.111 17.22 0.00 34.97 5.28
29 30 2.046314 AAATCAGGCCGACGGGTG 60.046 61.111 17.22 0.00 34.97 4.61
30 31 4.778143 AATCAGGCCGACGGGTGC 62.778 66.667 17.22 0.34 34.97 5.01
37 38 4.160635 CCGACGGGTGCGCAAATC 62.161 66.667 14.00 6.52 0.00 2.17
38 39 3.418913 CGACGGGTGCGCAAATCA 61.419 61.111 14.00 0.00 0.00 2.57
39 40 2.480555 GACGGGTGCGCAAATCAG 59.519 61.111 14.00 8.49 0.00 2.90
40 41 3.039202 GACGGGTGCGCAAATCAGG 62.039 63.158 14.00 0.58 0.00 3.86
41 42 3.055719 CGGGTGCGCAAATCAGGT 61.056 61.111 14.00 0.00 0.00 4.00
42 43 2.568090 GGGTGCGCAAATCAGGTG 59.432 61.111 14.00 0.00 0.00 4.00
43 44 2.568090 GGTGCGCAAATCAGGTGG 59.432 61.111 14.00 0.00 0.00 4.61
44 45 2.126346 GTGCGCAAATCAGGTGGC 60.126 61.111 14.00 0.00 0.00 5.01
45 46 3.372730 TGCGCAAATCAGGTGGCC 61.373 61.111 8.16 0.00 0.00 5.36
46 47 4.481112 GCGCAAATCAGGTGGCCG 62.481 66.667 0.30 0.00 0.00 6.13
47 48 3.055719 CGCAAATCAGGTGGCCGT 61.056 61.111 0.00 0.00 0.00 5.68
48 49 2.568090 GCAAATCAGGTGGCCGTG 59.432 61.111 0.00 0.00 0.00 4.94
49 50 2.993471 GCAAATCAGGTGGCCGTGG 61.993 63.158 0.00 0.00 0.00 4.94
50 51 1.603455 CAAATCAGGTGGCCGTGGT 60.603 57.895 0.00 0.00 0.00 4.16
51 52 1.152830 AAATCAGGTGGCCGTGGTT 59.847 52.632 0.00 0.00 31.34 3.67
52 53 1.178534 AAATCAGGTGGCCGTGGTTG 61.179 55.000 0.00 0.00 30.56 3.77
53 54 3.567579 ATCAGGTGGCCGTGGTTGG 62.568 63.158 0.00 0.00 0.00 3.77
56 57 3.956314 GGTGGCCGTGGTTGGGTA 61.956 66.667 0.00 0.00 0.00 3.69
57 58 2.359478 GTGGCCGTGGTTGGGTAG 60.359 66.667 0.00 0.00 0.00 3.18
58 59 4.338710 TGGCCGTGGTTGGGTAGC 62.339 66.667 0.00 0.00 0.00 3.58
59 60 4.029809 GGCCGTGGTTGGGTAGCT 62.030 66.667 0.00 0.00 0.00 3.32
60 61 2.436115 GCCGTGGTTGGGTAGCTC 60.436 66.667 0.00 0.00 0.00 4.09
61 62 2.125673 CCGTGGTTGGGTAGCTCG 60.126 66.667 0.00 0.00 40.00 5.03
62 63 2.125673 CGTGGTTGGGTAGCTCGG 60.126 66.667 0.00 0.00 37.53 4.63
63 64 2.267961 GTGGTTGGGTAGCTCGGG 59.732 66.667 0.00 0.00 0.00 5.14
64 65 3.006728 TGGTTGGGTAGCTCGGGG 61.007 66.667 0.00 0.00 0.00 5.73
65 66 3.793888 GGTTGGGTAGCTCGGGGG 61.794 72.222 0.00 0.00 0.00 5.40
66 67 4.484872 GTTGGGTAGCTCGGGGGC 62.485 72.222 0.00 0.00 0.00 5.80
137 138 3.702048 CGGTGGCGAGGGGAAGAA 61.702 66.667 0.00 0.00 0.00 2.52
138 139 2.998949 GGTGGCGAGGGGAAGAAT 59.001 61.111 0.00 0.00 0.00 2.40
139 140 1.452108 GGTGGCGAGGGGAAGAATG 60.452 63.158 0.00 0.00 0.00 2.67
140 141 1.452108 GTGGCGAGGGGAAGAATGG 60.452 63.158 0.00 0.00 0.00 3.16
141 142 2.193248 GGCGAGGGGAAGAATGGG 59.807 66.667 0.00 0.00 0.00 4.00
142 143 2.193248 GCGAGGGGAAGAATGGGG 59.807 66.667 0.00 0.00 0.00 4.96
143 144 2.375345 GCGAGGGGAAGAATGGGGA 61.375 63.158 0.00 0.00 0.00 4.81
144 145 1.921869 GCGAGGGGAAGAATGGGGAA 61.922 60.000 0.00 0.00 0.00 3.97
145 146 0.181350 CGAGGGGAAGAATGGGGAAG 59.819 60.000 0.00 0.00 0.00 3.46
146 147 1.596496 GAGGGGAAGAATGGGGAAGA 58.404 55.000 0.00 0.00 0.00 2.87
147 148 1.492599 GAGGGGAAGAATGGGGAAGAG 59.507 57.143 0.00 0.00 0.00 2.85
148 149 1.203622 AGGGGAAGAATGGGGAAGAGT 60.204 52.381 0.00 0.00 0.00 3.24
149 150 1.064389 GGGGAAGAATGGGGAAGAGTG 60.064 57.143 0.00 0.00 0.00 3.51
150 151 1.064389 GGGAAGAATGGGGAAGAGTGG 60.064 57.143 0.00 0.00 0.00 4.00
151 152 1.916181 GGAAGAATGGGGAAGAGTGGA 59.084 52.381 0.00 0.00 0.00 4.02
152 153 2.092699 GGAAGAATGGGGAAGAGTGGAG 60.093 54.545 0.00 0.00 0.00 3.86
153 154 2.649742 AGAATGGGGAAGAGTGGAGA 57.350 50.000 0.00 0.00 0.00 3.71
154 155 2.921221 AGAATGGGGAAGAGTGGAGAA 58.079 47.619 0.00 0.00 0.00 2.87
155 156 2.843113 AGAATGGGGAAGAGTGGAGAAG 59.157 50.000 0.00 0.00 0.00 2.85
156 157 2.649742 ATGGGGAAGAGTGGAGAAGA 57.350 50.000 0.00 0.00 0.00 2.87
157 158 1.944177 TGGGGAAGAGTGGAGAAGAG 58.056 55.000 0.00 0.00 0.00 2.85
158 159 1.150135 TGGGGAAGAGTGGAGAAGAGT 59.850 52.381 0.00 0.00 0.00 3.24
159 160 1.552792 GGGGAAGAGTGGAGAAGAGTG 59.447 57.143 0.00 0.00 0.00 3.51
160 161 2.530701 GGGAAGAGTGGAGAAGAGTGA 58.469 52.381 0.00 0.00 0.00 3.41
161 162 2.900546 GGGAAGAGTGGAGAAGAGTGAA 59.099 50.000 0.00 0.00 0.00 3.18
162 163 3.325135 GGGAAGAGTGGAGAAGAGTGAAA 59.675 47.826 0.00 0.00 0.00 2.69
163 164 4.202367 GGGAAGAGTGGAGAAGAGTGAAAA 60.202 45.833 0.00 0.00 0.00 2.29
164 165 5.368989 GGAAGAGTGGAGAAGAGTGAAAAA 58.631 41.667 0.00 0.00 0.00 1.94
165 166 5.468409 GGAAGAGTGGAGAAGAGTGAAAAAG 59.532 44.000 0.00 0.00 0.00 2.27
166 167 5.878406 AGAGTGGAGAAGAGTGAAAAAGA 57.122 39.130 0.00 0.00 0.00 2.52
167 168 5.852827 AGAGTGGAGAAGAGTGAAAAAGAG 58.147 41.667 0.00 0.00 0.00 2.85
168 169 5.365314 AGAGTGGAGAAGAGTGAAAAAGAGT 59.635 40.000 0.00 0.00 0.00 3.24
169 170 5.363939 AGTGGAGAAGAGTGAAAAAGAGTG 58.636 41.667 0.00 0.00 0.00 3.51
170 171 4.513318 GTGGAGAAGAGTGAAAAAGAGTGG 59.487 45.833 0.00 0.00 0.00 4.00
171 172 4.408921 TGGAGAAGAGTGAAAAAGAGTGGA 59.591 41.667 0.00 0.00 0.00 4.02
172 173 4.994217 GGAGAAGAGTGAAAAAGAGTGGAG 59.006 45.833 0.00 0.00 0.00 3.86
173 174 4.967036 AGAAGAGTGAAAAAGAGTGGAGG 58.033 43.478 0.00 0.00 0.00 4.30
174 175 3.778954 AGAGTGAAAAAGAGTGGAGGG 57.221 47.619 0.00 0.00 0.00 4.30
175 176 2.373502 AGAGTGAAAAAGAGTGGAGGGG 59.626 50.000 0.00 0.00 0.00 4.79
176 177 1.425448 AGTGAAAAAGAGTGGAGGGGG 59.575 52.381 0.00 0.00 0.00 5.40
177 178 1.145119 GTGAAAAAGAGTGGAGGGGGT 59.855 52.381 0.00 0.00 0.00 4.95
178 179 1.144913 TGAAAAAGAGTGGAGGGGGTG 59.855 52.381 0.00 0.00 0.00 4.61
179 180 0.178961 AAAAAGAGTGGAGGGGGTGC 60.179 55.000 0.00 0.00 0.00 5.01
180 181 2.411765 AAAAGAGTGGAGGGGGTGCG 62.412 60.000 0.00 0.00 0.00 5.34
204 205 4.928140 GGGAGGGACGGGCGGATA 62.928 72.222 0.00 0.00 0.00 2.59
205 206 3.303928 GGAGGGACGGGCGGATAG 61.304 72.222 0.00 0.00 0.00 2.08
206 207 2.203451 GAGGGACGGGCGGATAGA 60.203 66.667 0.00 0.00 0.00 1.98
207 208 1.831286 GAGGGACGGGCGGATAGAA 60.831 63.158 0.00 0.00 0.00 2.10
208 209 1.382146 AGGGACGGGCGGATAGAAA 60.382 57.895 0.00 0.00 0.00 2.52
209 210 0.979187 AGGGACGGGCGGATAGAAAA 60.979 55.000 0.00 0.00 0.00 2.29
210 211 0.107557 GGGACGGGCGGATAGAAAAA 60.108 55.000 0.00 0.00 0.00 1.94
211 212 1.296727 GGACGGGCGGATAGAAAAAG 58.703 55.000 0.00 0.00 0.00 2.27
212 213 1.296727 GACGGGCGGATAGAAAAAGG 58.703 55.000 0.00 0.00 0.00 3.11
213 214 0.746923 ACGGGCGGATAGAAAAAGGC 60.747 55.000 0.00 0.00 0.00 4.35
214 215 1.772063 CGGGCGGATAGAAAAAGGCG 61.772 60.000 0.00 0.00 0.00 5.52
215 216 0.746923 GGGCGGATAGAAAAAGGCGT 60.747 55.000 0.00 0.00 0.00 5.68
216 217 0.656259 GGCGGATAGAAAAAGGCGTC 59.344 55.000 0.00 0.00 0.00 5.19
217 218 0.656259 GCGGATAGAAAAAGGCGTCC 59.344 55.000 0.00 0.00 0.00 4.79
218 219 0.928229 CGGATAGAAAAAGGCGTCCG 59.072 55.000 0.00 0.00 41.98 4.79
219 220 1.738030 CGGATAGAAAAAGGCGTCCGT 60.738 52.381 3.63 0.00 42.54 4.69
220 221 1.664151 GGATAGAAAAAGGCGTCCGTG 59.336 52.381 0.00 0.00 0.00 4.94
221 222 2.344025 GATAGAAAAAGGCGTCCGTGT 58.656 47.619 0.00 0.00 0.00 4.49
222 223 1.504359 TAGAAAAAGGCGTCCGTGTG 58.496 50.000 0.00 0.00 0.00 3.82
223 224 1.370051 GAAAAAGGCGTCCGTGTGC 60.370 57.895 0.00 0.00 0.00 4.57
229 230 4.961511 GCGTCCGTGTGCCACTGA 62.962 66.667 0.00 0.68 31.34 3.41
230 231 3.036084 CGTCCGTGTGCCACTGAC 61.036 66.667 15.15 15.15 42.37 3.51
231 232 3.036084 GTCCGTGTGCCACTGACG 61.036 66.667 11.81 0.00 38.40 4.35
287 288 4.595538 TCCGCGTGCTGTCCGTTT 62.596 61.111 4.92 0.00 0.00 3.60
288 289 4.072088 CCGCGTGCTGTCCGTTTC 62.072 66.667 4.92 0.00 0.00 2.78
289 290 3.334751 CGCGTGCTGTCCGTTTCA 61.335 61.111 0.00 0.00 0.00 2.69
290 291 2.248431 GCGTGCTGTCCGTTTCAC 59.752 61.111 0.00 0.00 0.00 3.18
291 292 2.935955 CGTGCTGTCCGTTTCACC 59.064 61.111 0.00 0.00 0.00 4.02
292 293 1.594293 CGTGCTGTCCGTTTCACCT 60.594 57.895 0.00 0.00 0.00 4.00
293 294 1.557443 CGTGCTGTCCGTTTCACCTC 61.557 60.000 0.00 0.00 0.00 3.85
294 295 0.531974 GTGCTGTCCGTTTCACCTCA 60.532 55.000 0.00 0.00 0.00 3.86
295 296 0.179234 TGCTGTCCGTTTCACCTCAA 59.821 50.000 0.00 0.00 0.00 3.02
296 297 1.305201 GCTGTCCGTTTCACCTCAAA 58.695 50.000 0.00 0.00 0.00 2.69
297 298 1.673920 GCTGTCCGTTTCACCTCAAAA 59.326 47.619 0.00 0.00 0.00 2.44
298 299 2.287009 GCTGTCCGTTTCACCTCAAAAG 60.287 50.000 0.00 0.00 0.00 2.27
299 300 1.673920 TGTCCGTTTCACCTCAAAAGC 59.326 47.619 0.00 0.00 0.00 3.51
300 301 0.941542 TCCGTTTCACCTCAAAAGCG 59.058 50.000 0.00 0.00 0.00 4.68
301 302 0.040425 CCGTTTCACCTCAAAAGCGG 60.040 55.000 0.00 0.00 0.00 5.52
302 303 0.660300 CGTTTCACCTCAAAAGCGGC 60.660 55.000 0.00 0.00 0.00 6.53
303 304 0.660300 GTTTCACCTCAAAAGCGGCG 60.660 55.000 0.51 0.51 0.00 6.46
304 305 2.400896 TTTCACCTCAAAAGCGGCGC 62.401 55.000 26.86 26.86 0.00 6.53
305 306 3.659092 CACCTCAAAAGCGGCGCA 61.659 61.111 35.02 12.11 0.00 6.09
306 307 2.904866 ACCTCAAAAGCGGCGCAA 60.905 55.556 35.02 12.39 0.00 4.85
307 308 2.334653 CCTCAAAAGCGGCGCAAA 59.665 55.556 35.02 12.75 0.00 3.68
308 309 1.080569 CCTCAAAAGCGGCGCAAAT 60.081 52.632 35.02 17.00 0.00 2.32
309 310 0.667184 CCTCAAAAGCGGCGCAAATT 60.667 50.000 35.02 21.96 0.00 1.82
310 311 1.139163 CTCAAAAGCGGCGCAAATTT 58.861 45.000 35.02 26.11 0.00 1.82
311 312 0.857935 TCAAAAGCGGCGCAAATTTG 59.142 45.000 32.73 32.73 33.50 2.32
312 313 0.857935 CAAAAGCGGCGCAAATTTGA 59.142 45.000 33.96 0.00 33.80 2.69
313 314 1.260033 CAAAAGCGGCGCAAATTTGAA 59.740 42.857 33.96 0.00 33.80 2.69
314 315 0.858583 AAAGCGGCGCAAATTTGAAC 59.141 45.000 35.02 11.81 0.00 3.18
315 316 0.943835 AAGCGGCGCAAATTTGAACC 60.944 50.000 35.02 18.74 0.00 3.62
316 317 2.715849 GCGGCGCAAATTTGAACCG 61.716 57.895 31.83 31.83 45.28 4.44
317 318 2.085844 CGGCGCAAATTTGAACCGG 61.086 57.895 30.01 18.49 41.51 5.28
318 319 1.736282 GGCGCAAATTTGAACCGGG 60.736 57.895 22.31 3.87 0.00 5.73
319 320 1.736282 GCGCAAATTTGAACCGGGG 60.736 57.895 22.31 3.15 0.00 5.73
320 321 1.960612 CGCAAATTTGAACCGGGGA 59.039 52.632 22.31 0.00 0.00 4.81
321 322 0.530288 CGCAAATTTGAACCGGGGAT 59.470 50.000 22.31 0.00 0.00 3.85
322 323 1.735369 CGCAAATTTGAACCGGGGATG 60.735 52.381 22.31 0.00 0.00 3.51
323 324 1.405391 GCAAATTTGAACCGGGGATGG 60.405 52.381 22.31 0.00 0.00 3.51
324 325 1.206849 CAAATTTGAACCGGGGATGGG 59.793 52.381 13.08 0.00 0.00 4.00
325 326 0.411848 AATTTGAACCGGGGATGGGT 59.588 50.000 6.32 0.00 40.20 4.51
326 327 0.033503 ATTTGAACCGGGGATGGGTC 60.034 55.000 6.32 0.00 46.46 4.46
328 329 3.078836 GAACCGGGGATGGGTCGA 61.079 66.667 6.32 0.00 35.67 4.20
329 330 2.608368 AACCGGGGATGGGTCGAA 60.608 61.111 6.32 0.00 36.57 3.71
330 331 2.187896 GAACCGGGGATGGGTCGAAA 62.188 60.000 6.32 0.00 35.67 3.46
331 332 2.189521 CCGGGGATGGGTCGAAAG 59.810 66.667 0.00 0.00 0.00 2.62
332 333 2.513897 CGGGGATGGGTCGAAAGC 60.514 66.667 0.00 0.00 0.00 3.51
333 334 2.513897 GGGGATGGGTCGAAAGCG 60.514 66.667 0.00 0.00 39.35 4.68
334 335 2.513897 GGGATGGGTCGAAAGCGG 60.514 66.667 0.00 0.00 38.28 5.52
335 336 2.582436 GGATGGGTCGAAAGCGGA 59.418 61.111 0.00 0.00 38.28 5.54
336 337 1.814169 GGATGGGTCGAAAGCGGAC 60.814 63.158 0.00 0.00 38.28 4.79
337 338 1.079405 GATGGGTCGAAAGCGGACA 60.079 57.895 0.00 0.00 38.28 4.02
338 339 0.672401 GATGGGTCGAAAGCGGACAA 60.672 55.000 0.00 0.00 38.28 3.18
339 340 0.250553 ATGGGTCGAAAGCGGACAAA 60.251 50.000 0.00 0.00 38.28 2.83
340 341 0.464013 TGGGTCGAAAGCGGACAAAA 60.464 50.000 0.00 0.00 38.28 2.44
341 342 0.664224 GGGTCGAAAGCGGACAAAAA 59.336 50.000 0.00 0.00 38.28 1.94
342 343 1.334689 GGGTCGAAAGCGGACAAAAAG 60.335 52.381 0.00 0.00 38.28 2.27
343 344 1.332686 GGTCGAAAGCGGACAAAAAGT 59.667 47.619 0.00 0.00 38.28 2.66
344 345 2.601504 GGTCGAAAGCGGACAAAAAGTC 60.602 50.000 0.00 0.00 46.83 3.01
355 356 3.231160 GACAAAAAGTCCGTTTATGCCG 58.769 45.455 0.00 0.00 41.56 5.69
356 357 1.982913 CAAAAAGTCCGTTTATGCCGC 59.017 47.619 0.00 0.00 0.00 6.53
357 358 0.167251 AAAAGTCCGTTTATGCCGCG 59.833 50.000 0.00 0.00 0.00 6.46
358 359 2.248274 AAAGTCCGTTTATGCCGCGC 62.248 55.000 0.00 0.00 0.00 6.86
359 360 4.568876 GTCCGTTTATGCCGCGCG 62.569 66.667 25.67 25.67 0.00 6.86
363 364 4.886925 GTTTATGCCGCGCGCTGG 62.887 66.667 30.48 29.75 38.78 4.85
375 376 2.892425 CGCTGGGCCGTCTGATTC 60.892 66.667 0.00 0.00 0.00 2.52
376 377 2.586792 GCTGGGCCGTCTGATTCT 59.413 61.111 0.00 0.00 0.00 2.40
377 378 1.078143 GCTGGGCCGTCTGATTCTT 60.078 57.895 0.00 0.00 0.00 2.52
378 379 1.092345 GCTGGGCCGTCTGATTCTTC 61.092 60.000 0.00 0.00 0.00 2.87
379 380 0.462759 CTGGGCCGTCTGATTCTTCC 60.463 60.000 0.00 0.00 0.00 3.46
380 381 1.198094 TGGGCCGTCTGATTCTTCCA 61.198 55.000 0.00 0.00 0.00 3.53
381 382 0.181350 GGGCCGTCTGATTCTTCCAT 59.819 55.000 0.00 0.00 0.00 3.41
382 383 1.408822 GGGCCGTCTGATTCTTCCATT 60.409 52.381 0.00 0.00 0.00 3.16
383 384 2.369394 GGCCGTCTGATTCTTCCATTT 58.631 47.619 0.00 0.00 0.00 2.32
384 385 2.755103 GGCCGTCTGATTCTTCCATTTT 59.245 45.455 0.00 0.00 0.00 1.82
385 386 3.945285 GGCCGTCTGATTCTTCCATTTTA 59.055 43.478 0.00 0.00 0.00 1.52
386 387 4.201920 GGCCGTCTGATTCTTCCATTTTAC 60.202 45.833 0.00 0.00 0.00 2.01
387 388 4.201920 GCCGTCTGATTCTTCCATTTTACC 60.202 45.833 0.00 0.00 0.00 2.85
388 389 4.335594 CCGTCTGATTCTTCCATTTTACCC 59.664 45.833 0.00 0.00 0.00 3.69
389 390 4.941263 CGTCTGATTCTTCCATTTTACCCA 59.059 41.667 0.00 0.00 0.00 4.51
390 391 5.414454 CGTCTGATTCTTCCATTTTACCCAA 59.586 40.000 0.00 0.00 0.00 4.12
391 392 6.072175 CGTCTGATTCTTCCATTTTACCCAAA 60.072 38.462 0.00 0.00 0.00 3.28
392 393 7.090808 GTCTGATTCTTCCATTTTACCCAAAC 58.909 38.462 0.00 0.00 0.00 2.93
393 394 6.019779 TGATTCTTCCATTTTACCCAAACG 57.980 37.500 0.00 0.00 0.00 3.60
394 395 4.857509 TTCTTCCATTTTACCCAAACGG 57.142 40.909 0.00 0.00 37.81 4.44
395 396 4.101645 TCTTCCATTTTACCCAAACGGA 57.898 40.909 0.00 0.00 34.64 4.69
396 397 3.822167 TCTTCCATTTTACCCAAACGGAC 59.178 43.478 0.00 0.00 34.64 4.79
397 398 2.152830 TCCATTTTACCCAAACGGACG 58.847 47.619 0.00 0.00 34.64 4.79
398 399 1.401800 CCATTTTACCCAAACGGACGC 60.402 52.381 0.00 0.00 34.64 5.19
399 400 1.267261 CATTTTACCCAAACGGACGCA 59.733 47.619 0.00 0.00 34.64 5.24
400 401 1.606903 TTTTACCCAAACGGACGCAT 58.393 45.000 0.00 0.00 34.64 4.73
401 402 1.606903 TTTACCCAAACGGACGCATT 58.393 45.000 0.00 0.00 34.64 3.56
402 403 2.469274 TTACCCAAACGGACGCATTA 57.531 45.000 0.00 0.00 34.64 1.90
403 404 2.012937 TACCCAAACGGACGCATTAG 57.987 50.000 0.00 0.00 34.64 1.73
404 405 0.322322 ACCCAAACGGACGCATTAGA 59.678 50.000 0.00 0.00 34.64 2.10
405 406 1.270947 ACCCAAACGGACGCATTAGAA 60.271 47.619 0.00 0.00 34.64 2.10
406 407 2.014128 CCCAAACGGACGCATTAGAAT 58.986 47.619 0.00 0.00 0.00 2.40
407 408 2.223249 CCCAAACGGACGCATTAGAATG 60.223 50.000 0.00 0.00 39.40 2.67
408 409 2.223249 CCAAACGGACGCATTAGAATGG 60.223 50.000 4.49 0.00 36.90 3.16
414 415 1.941812 CGCATTAGAATGGGGTCGC 59.058 57.895 10.60 0.00 43.31 5.19
415 416 1.831389 CGCATTAGAATGGGGTCGCG 61.831 60.000 0.00 0.00 43.31 5.87
416 417 1.507141 GCATTAGAATGGGGTCGCGG 61.507 60.000 6.13 0.00 36.90 6.46
417 418 0.884704 CATTAGAATGGGGTCGCGGG 60.885 60.000 6.13 0.00 32.78 6.13
418 419 2.052047 ATTAGAATGGGGTCGCGGGG 62.052 60.000 6.13 0.00 0.00 5.73
419 420 3.988050 TAGAATGGGGTCGCGGGGT 62.988 63.158 6.13 0.00 0.00 4.95
431 432 3.966543 CGGGGTGGAGTTGGCCTT 61.967 66.667 3.32 0.00 0.00 4.35
432 433 2.598787 CGGGGTGGAGTTGGCCTTA 61.599 63.158 3.32 0.00 0.00 2.69
433 434 1.303282 GGGGTGGAGTTGGCCTTAG 59.697 63.158 3.32 0.00 0.00 2.18
434 435 1.498176 GGGGTGGAGTTGGCCTTAGT 61.498 60.000 3.32 0.00 0.00 2.24
435 436 1.282382 GGGTGGAGTTGGCCTTAGTA 58.718 55.000 3.32 0.00 0.00 1.82
436 437 1.631898 GGGTGGAGTTGGCCTTAGTAA 59.368 52.381 3.32 0.00 0.00 2.24
437 438 2.355818 GGGTGGAGTTGGCCTTAGTAAG 60.356 54.545 3.32 2.65 0.00 2.34
438 439 2.357075 GTGGAGTTGGCCTTAGTAAGC 58.643 52.381 3.32 0.60 0.00 3.09
443 444 4.414732 GGCCTTAGTAAGCCGACG 57.585 61.111 4.22 0.00 39.87 5.12
444 445 1.881709 GGCCTTAGTAAGCCGACGC 60.882 63.158 4.22 2.30 39.87 5.19
445 446 2.228914 GCCTTAGTAAGCCGACGCG 61.229 63.158 3.53 3.53 41.18 6.01
609 623 4.918201 CCGCTCTCCCCGGCAATC 62.918 72.222 0.00 0.00 39.22 2.67
612 626 3.142393 CTCTCCCCGGCAATCGAT 58.858 61.111 0.00 0.00 42.43 3.59
613 627 1.005630 CTCTCCCCGGCAATCGATC 60.006 63.158 0.00 0.00 42.43 3.69
615 629 2.445845 TCCCCGGCAATCGATCCT 60.446 61.111 0.00 0.00 42.43 3.24
631 658 4.018415 TCGATCCTTTTCCCATCTTTTCCT 60.018 41.667 0.00 0.00 0.00 3.36
634 661 5.339423 TCCTTTTCCCATCTTTTCCTTCT 57.661 39.130 0.00 0.00 0.00 2.85
639 666 1.740025 CCCATCTTTTCCTTCTCGTGC 59.260 52.381 0.00 0.00 0.00 5.34
640 667 1.394917 CCATCTTTTCCTTCTCGTGCG 59.605 52.381 0.00 0.00 0.00 5.34
641 668 1.394917 CATCTTTTCCTTCTCGTGCGG 59.605 52.381 0.00 0.00 0.00 5.69
642 669 0.949105 TCTTTTCCTTCTCGTGCGGC 60.949 55.000 0.00 0.00 0.00 6.53
643 670 1.912371 CTTTTCCTTCTCGTGCGGCC 61.912 60.000 0.00 0.00 0.00 6.13
644 671 4.735132 TTCCTTCTCGTGCGGCCG 62.735 66.667 24.05 24.05 0.00 6.13
673 700 3.998672 GGTTCTCGACCGGCCACA 61.999 66.667 0.00 0.00 39.00 4.17
674 701 2.432628 GTTCTCGACCGGCCACAG 60.433 66.667 0.00 0.00 0.00 3.66
675 702 4.373116 TTCTCGACCGGCCACAGC 62.373 66.667 0.00 0.00 38.76 4.40
685 712 3.281240 GCCACAGCCCACAATCTG 58.719 61.111 0.00 0.00 36.45 2.90
686 713 1.303561 GCCACAGCCCACAATCTGA 60.304 57.895 0.00 0.00 34.57 3.27
687 714 0.682209 GCCACAGCCCACAATCTGAT 60.682 55.000 0.00 0.00 34.57 2.90
688 715 1.100510 CCACAGCCCACAATCTGATG 58.899 55.000 0.00 0.00 34.57 3.07
689 716 1.100510 CACAGCCCACAATCTGATGG 58.899 55.000 0.00 0.00 34.57 3.51
690 717 0.682209 ACAGCCCACAATCTGATGGC 60.682 55.000 8.30 8.30 37.66 4.40
691 718 0.395311 CAGCCCACAATCTGATGGCT 60.395 55.000 12.14 12.14 44.32 4.75
692 719 0.395311 AGCCCACAATCTGATGGCTG 60.395 55.000 15.98 2.86 42.82 4.85
693 720 0.394762 GCCCACAATCTGATGGCTGA 60.395 55.000 8.93 0.00 35.67 4.26
694 721 1.753141 GCCCACAATCTGATGGCTGAT 60.753 52.381 8.93 0.00 35.67 2.90
728 755 3.760035 CGTGTGGGCGCTAGGAGT 61.760 66.667 7.64 0.00 0.00 3.85
729 756 2.412323 CGTGTGGGCGCTAGGAGTA 61.412 63.158 7.64 0.00 0.00 2.59
730 757 1.437986 GTGTGGGCGCTAGGAGTAG 59.562 63.158 7.64 0.00 0.00 2.57
731 758 1.756950 TGTGGGCGCTAGGAGTAGG 60.757 63.158 7.64 0.00 0.00 3.18
732 759 1.455217 GTGGGCGCTAGGAGTAGGA 60.455 63.158 7.64 0.00 0.00 2.94
736 763 1.035932 GGCGCTAGGAGTAGGACACA 61.036 60.000 7.64 0.00 0.00 3.72
739 766 1.475403 GCTAGGAGTAGGACACAGCA 58.525 55.000 0.00 0.00 0.00 4.41
867 904 0.668535 CGTATCGCTGTCCTCCATCA 59.331 55.000 0.00 0.00 0.00 3.07
868 905 1.270826 CGTATCGCTGTCCTCCATCAT 59.729 52.381 0.00 0.00 0.00 2.45
869 906 2.669670 CGTATCGCTGTCCTCCATCATC 60.670 54.545 0.00 0.00 0.00 2.92
870 907 0.683973 ATCGCTGTCCTCCATCATCC 59.316 55.000 0.00 0.00 0.00 3.51
871 908 0.687427 TCGCTGTCCTCCATCATCCA 60.687 55.000 0.00 0.00 0.00 3.41
872 909 0.395686 CGCTGTCCTCCATCATCCAT 59.604 55.000 0.00 0.00 0.00 3.41
873 910 1.607509 CGCTGTCCTCCATCATCCATC 60.608 57.143 0.00 0.00 0.00 3.51
903 941 4.083862 GCGTCTCACTCCCACCCC 62.084 72.222 0.00 0.00 0.00 4.95
904 942 3.760035 CGTCTCACTCCCACCCCG 61.760 72.222 0.00 0.00 0.00 5.73
911 949 4.704833 CTCCCACCCCGCACACTG 62.705 72.222 0.00 0.00 0.00 3.66
914 952 3.941188 CCACCCCGCACACTGACT 61.941 66.667 0.00 0.00 0.00 3.41
915 953 2.666190 CACCCCGCACACTGACTG 60.666 66.667 0.00 0.00 0.00 3.51
916 954 2.842462 ACCCCGCACACTGACTGA 60.842 61.111 0.00 0.00 0.00 3.41
918 956 2.421314 CCCGCACACTGACTGACA 59.579 61.111 0.00 0.00 0.00 3.58
920 958 1.068083 CCGCACACTGACTGACACT 59.932 57.895 0.00 0.00 0.00 3.55
921 959 1.217585 CCGCACACTGACTGACACTG 61.218 60.000 0.00 0.00 0.00 3.66
922 960 1.825285 CGCACACTGACTGACACTGC 61.825 60.000 0.00 0.00 0.00 4.40
1034 1091 3.473647 TCCTCGGCTGCTCCCATG 61.474 66.667 0.00 0.00 0.00 3.66
1231 1314 4.626081 GACAGCGCCAGTGGTGGT 62.626 66.667 21.55 21.55 46.96 4.16
1239 1326 2.507854 CCAGTGGTGGTGACCTCGT 61.508 63.158 2.11 0.00 43.58 4.18
1625 1791 3.242739 CGTTTCTGTGGGAACTTGTTCAG 60.243 47.826 14.38 5.07 33.13 3.02
1628 1794 2.703536 TCTGTGGGAACTTGTTCAGCTA 59.296 45.455 14.38 0.00 0.00 3.32
1732 1906 2.554344 GGTGAGGGTGGCTTGTGAATTA 60.554 50.000 0.00 0.00 0.00 1.40
1734 1908 4.523083 GTGAGGGTGGCTTGTGAATTATA 58.477 43.478 0.00 0.00 0.00 0.98
1741 1915 6.204882 GGGTGGCTTGTGAATTATATAGTGTC 59.795 42.308 0.00 0.00 0.00 3.67
1787 1961 1.621317 TGATAACCCAAGCGACACTCA 59.379 47.619 0.00 0.00 0.00 3.41
1788 1962 2.000447 GATAACCCAAGCGACACTCAC 59.000 52.381 0.00 0.00 0.00 3.51
1855 2046 4.074970 ACATGATGAAGAAAGAGCGGTTT 58.925 39.130 0.00 0.00 0.00 3.27
1904 2095 2.486472 AGCTCAGGTTGTGATTCCAG 57.514 50.000 0.00 0.00 33.51 3.86
1969 2165 8.798859 AGATTGTCTGAAACTAAATATGTGCT 57.201 30.769 0.00 0.00 0.00 4.40
1984 2180 8.538409 AAATATGTGCTTTCCAGATTGAAAAC 57.462 30.769 0.00 0.00 34.06 2.43
2143 2341 5.938125 GGTTAGTTTCTCATTCAGTGCCTTA 59.062 40.000 0.00 0.00 0.00 2.69
2151 2349 6.108687 TCTCATTCAGTGCCTTATGTTGTAG 58.891 40.000 0.00 0.00 0.00 2.74
2153 2351 4.901197 TTCAGTGCCTTATGTTGTAGGA 57.099 40.909 0.00 0.00 33.13 2.94
2154 2352 4.471904 TCAGTGCCTTATGTTGTAGGAG 57.528 45.455 0.00 0.00 33.13 3.69
2179 2378 5.375417 TGCAACAGTTAAGACATGGATTG 57.625 39.130 0.00 0.00 0.00 2.67
2256 2466 0.244721 GACCAGCCCAACTGCAATTC 59.755 55.000 0.00 0.00 45.78 2.17
2259 2469 1.345415 CCAGCCCAACTGCAATTCTTT 59.655 47.619 0.00 0.00 45.78 2.52
2383 2757 2.790433 TGTAGCTTCTCCCGCAAAAAT 58.210 42.857 0.00 0.00 0.00 1.82
2388 2762 5.208463 AGCTTCTCCCGCAAAAATAAAAA 57.792 34.783 0.00 0.00 0.00 1.94
2390 2764 6.930731 AGCTTCTCCCGCAAAAATAAAAATA 58.069 32.000 0.00 0.00 0.00 1.40
2391 2765 7.382898 AGCTTCTCCCGCAAAAATAAAAATAA 58.617 30.769 0.00 0.00 0.00 1.40
2392 2766 7.875554 AGCTTCTCCCGCAAAAATAAAAATAAA 59.124 29.630 0.00 0.00 0.00 1.40
2393 2767 8.499967 GCTTCTCCCGCAAAAATAAAAATAAAA 58.500 29.630 0.00 0.00 0.00 1.52
2435 2810 9.678941 TGTAGCTTCGTTATTGATAACATAGAG 57.321 33.333 12.79 6.58 42.02 2.43
2439 2814 8.855279 GCTTCGTTATTGATAACATAGAGCTAG 58.145 37.037 12.79 0.00 42.02 3.42
2452 2827 3.495543 GCTAGTGCTGCTCTTGCC 58.504 61.111 21.65 8.61 38.71 4.52
2453 2828 2.111582 GCTAGTGCTGCTCTTGCCC 61.112 63.158 21.65 2.10 38.71 5.36
2504 2986 7.415095 GCACTTGCACAAATAGTCATGGTTATA 60.415 37.037 0.00 0.00 41.59 0.98
2598 3185 5.214417 TGATGCAATTGACGAGTTCTTTTG 58.786 37.500 10.34 0.00 0.00 2.44
2601 3188 3.857010 GCAATTGACGAGTTCTTTTGGGG 60.857 47.826 10.34 0.00 0.00 4.96
2604 3191 1.314730 GACGAGTTCTTTTGGGGCAA 58.685 50.000 0.00 0.00 0.00 4.52
2606 3193 1.681264 ACGAGTTCTTTTGGGGCAAAG 59.319 47.619 0.00 0.00 34.72 2.77
2614 3201 3.258123 TCTTTTGGGGCAAAGCTATTCAC 59.742 43.478 0.00 0.00 34.72 3.18
2618 3206 1.745653 GGGGCAAAGCTATTCACTGAC 59.254 52.381 0.00 0.00 0.00 3.51
2757 3346 7.867305 TTTGACACACTTTCATTAGTAACCA 57.133 32.000 0.00 0.00 0.00 3.67
2911 3557 3.566273 TGCATTTTCTGTTGCACGG 57.434 47.368 0.00 0.00 43.54 4.94
3034 3732 9.429359 GATACCACATCTCATATTCTAACTTGG 57.571 37.037 0.00 0.00 0.00 3.61
3062 3769 6.650120 AGACACTCCAATATTACGGTCAAAT 58.350 36.000 0.00 0.00 0.00 2.32
3148 3857 8.755028 TGATTGGAAACTGATGATGATTTCATT 58.245 29.630 0.00 0.00 45.29 2.57
3149 3858 8.942338 ATTGGAAACTGATGATGATTTCATTG 57.058 30.769 0.00 0.00 45.29 2.82
3368 4084 2.092429 TGGATTTCAGGCCTTAAGCGAT 60.092 45.455 0.00 0.00 45.17 4.58
3577 4338 6.963796 ACATGCTTGTTCTCTTTTTAGTCTG 58.036 36.000 0.00 0.00 29.55 3.51
3581 4342 7.472543 TGCTTGTTCTCTTTTTAGTCTGAAAC 58.527 34.615 0.00 0.00 0.00 2.78
3878 5202 3.446873 AGAATGTGGTTTTCAACACTGCA 59.553 39.130 0.00 0.00 38.39 4.41
3905 5229 9.958180 AAGGTATTTGATTTTCCTTTTAATGGG 57.042 29.630 0.00 0.00 35.32 4.00
3941 6201 6.403866 ACACATTCAGCCTTGTTTAAATGA 57.596 33.333 0.00 0.00 0.00 2.57
3965 6225 7.226523 TGAACATCGTTCTTCTGAGAAAATGAA 59.773 33.333 14.59 4.43 43.21 2.57
3966 6226 7.496529 ACATCGTTCTTCTGAGAAAATGAAA 57.503 32.000 14.59 0.00 43.21 2.69
3967 6227 7.355778 ACATCGTTCTTCTGAGAAAATGAAAC 58.644 34.615 14.59 5.60 43.21 2.78
3968 6228 6.918892 TCGTTCTTCTGAGAAAATGAAACA 57.081 33.333 0.00 0.00 43.21 2.83
3969 6229 6.948353 TCGTTCTTCTGAGAAAATGAAACAG 58.052 36.000 0.00 0.00 43.21 3.16
3970 6230 6.761242 TCGTTCTTCTGAGAAAATGAAACAGA 59.239 34.615 0.00 0.00 43.21 3.41
3971 6231 7.279981 TCGTTCTTCTGAGAAAATGAAACAGAA 59.720 33.333 0.00 0.00 43.21 3.02
3972 6232 7.910162 CGTTCTTCTGAGAAAATGAAACAGAAA 59.090 33.333 0.00 0.00 43.21 2.52
3973 6233 9.573133 GTTCTTCTGAGAAAATGAAACAGAAAA 57.427 29.630 0.00 0.00 43.21 2.29
4043 6313 6.430925 TCACAATATGGTTCCTCAGAAAAGTG 59.569 38.462 0.00 0.00 32.58 3.16
4086 6356 5.342806 TCAATGCTTAACTGAGAAACACG 57.657 39.130 0.00 0.00 0.00 4.49
4414 6705 1.574263 AAGAGGGGAGGTCTTAGTGC 58.426 55.000 0.00 0.00 32.29 4.40
4638 7326 9.781834 CTTTACTCACTTTACACTGAGAGATAG 57.218 37.037 1.74 0.00 37.85 2.08
4753 7515 6.464222 TGTTATAACAACTCTTCAGAGGGTG 58.536 40.000 15.92 8.18 36.49 4.61
5129 8333 2.265683 CGGCCCTTCGTTAACTTCTAC 58.734 52.381 3.71 0.00 0.00 2.59
5132 8336 4.202090 CGGCCCTTCGTTAACTTCTACTAT 60.202 45.833 3.71 0.00 0.00 2.12
5133 8337 5.048507 GGCCCTTCGTTAACTTCTACTATG 58.951 45.833 3.71 0.00 0.00 2.23
5134 8338 5.394993 GGCCCTTCGTTAACTTCTACTATGT 60.395 44.000 3.71 0.00 0.00 2.29
5135 8339 6.183360 GGCCCTTCGTTAACTTCTACTATGTA 60.183 42.308 3.71 0.00 0.00 2.29
5151 8355 5.752650 ACTATGTACTAGTAGCAGGTCACA 58.247 41.667 1.87 0.00 38.96 3.58
5174 8378 9.683069 CACATGAAAGTTAAAACTGCTTATCTT 57.317 29.630 0.00 0.00 39.66 2.40
5263 8469 3.341823 AGTGTGAACATCTCTGGAATGC 58.658 45.455 0.00 0.00 0.00 3.56
5292 8498 4.319549 GGAACGATGGACTTGTCTTCAAAC 60.320 45.833 0.00 0.00 32.87 2.93
5366 8572 5.443185 TTGAGAACTCAATTTGGAAGCAG 57.557 39.130 12.40 0.00 43.90 4.24
5385 8619 7.713073 GGAAGCAGATTGTATTTCTTAGCTACT 59.287 37.037 0.00 0.00 0.00 2.57
5423 8658 9.093458 ACTCCTGATTTTTATGTCCAGAATTTT 57.907 29.630 0.00 0.00 0.00 1.82
5424 8659 9.362539 CTCCTGATTTTTATGTCCAGAATTTTG 57.637 33.333 0.00 0.00 0.00 2.44
5438 8673 6.767423 TCCAGAATTTTGCATAATCGAGATGA 59.233 34.615 12.96 0.00 0.00 2.92
5443 8678 5.723492 TTTGCATAATCGAGATGAGTGTG 57.277 39.130 12.96 0.00 36.93 3.82
5490 8735 2.501261 GGTTGGAAGGTGAACACTACC 58.499 52.381 4.96 6.74 38.52 3.18
5616 8863 7.831753 TCTTTACTCTCGATGATTTCTTCACT 58.168 34.615 0.00 0.00 37.11 3.41
5617 8864 8.307483 TCTTTACTCTCGATGATTTCTTCACTT 58.693 33.333 0.00 0.00 37.11 3.16
5618 8865 8.833231 TTTACTCTCGATGATTTCTTCACTTT 57.167 30.769 0.00 0.00 37.11 2.66
5619 8866 8.833231 TTACTCTCGATGATTTCTTCACTTTT 57.167 30.769 0.00 0.00 37.11 2.27
5620 8867 7.736447 ACTCTCGATGATTTCTTCACTTTTT 57.264 32.000 0.00 0.00 37.11 1.94
5646 8893 6.552445 TTTTGGAAAAGGATGGTTTCTTCA 57.448 33.333 0.00 0.00 35.68 3.02
5647 8894 5.529581 TTGGAAAAGGATGGTTTCTTCAC 57.470 39.130 0.00 0.00 35.68 3.18
5693 8946 5.790593 TGTACTTCCTAGGTGAATGTTGAC 58.209 41.667 9.08 0.00 0.00 3.18
5882 9135 2.409870 GGCTGGATGTGGAAAGCCG 61.410 63.158 0.00 0.00 45.30 5.52
5897 9150 2.674796 AGCCGACTCAAAGATGGTAC 57.325 50.000 0.00 0.00 0.00 3.34
5979 9240 6.183360 TGTGTCTCACATTTCTGTTTCACTTC 60.183 38.462 0.00 0.00 39.62 3.01
6088 9349 5.457148 CACGAAGATTACATTCTCGAGAAGG 59.543 44.000 31.95 31.95 41.16 3.46
6172 9436 6.005066 TGGGATAAAAGCATCTCAGATGAA 57.995 37.500 19.53 0.00 30.26 2.57
6179 9443 4.246712 AGCATCTCAGATGAAAACCCAT 57.753 40.909 19.53 0.00 0.00 4.00
6230 9494 4.202243 CCAAGGGCAAAAACATCTCTTCAA 60.202 41.667 0.00 0.00 0.00 2.69
6354 9618 3.302365 TCCGGTTTCTCGACGTAAAAT 57.698 42.857 0.00 0.00 0.00 1.82
6361 9625 0.643820 CTCGACGTAAAATCGCACCC 59.356 55.000 0.00 0.00 39.46 4.61
6375 9639 0.602905 GCACCCGATTCTTATCCGGG 60.603 60.000 16.48 16.48 43.90 5.73
6399 9663 1.462283 CGATAGGCATCAAATCTGGCG 59.538 52.381 0.00 0.00 43.43 5.69
6458 9723 6.238593 GCACATGAATCTAGTCTTGGAATTCC 60.239 42.308 18.17 18.17 0.00 3.01
6496 9761 3.084786 ACTTTCCAGGCTTCAGTAATGC 58.915 45.455 0.00 0.00 0.00 3.56
6548 9816 5.639082 GCAGGTTTTAACATTCCATTTCCAG 59.361 40.000 0.00 0.00 0.00 3.86
6603 9905 3.067742 GGGCTGTTTCTGGATCATCATTG 59.932 47.826 0.00 0.00 0.00 2.82
6791 10093 6.404074 CCATTGAAGCAGACTGTTCTTAATCC 60.404 42.308 3.99 0.00 0.00 3.01
6832 10134 3.081804 GGGTTCCACCACTACAAATCTG 58.918 50.000 0.00 0.00 41.02 2.90
6848 10150 4.590400 AATCTGCTCGTCGAAAATCAAG 57.410 40.909 0.00 0.00 0.00 3.02
6968 10381 2.798283 TGTTAGCCTTTGTTTCGTCGAG 59.202 45.455 0.00 0.00 0.00 4.04
6974 10387 2.153247 CCTTTGTTTCGTCGAGTTCTCG 59.847 50.000 14.93 14.93 0.00 4.04
6975 10388 2.480224 TTGTTTCGTCGAGTTCTCGT 57.520 45.000 19.26 0.00 0.00 4.18
7010 10428 1.134007 TGGTGCTATTCAGGATGCTGG 60.134 52.381 14.84 0.00 34.76 4.85
7043 10461 3.175240 CGTTGCGTCTCAGGCTCG 61.175 66.667 0.00 0.00 0.00 5.03
7104 10527 4.700213 AGCAAACTACCACGAAGCATATTT 59.300 37.500 0.00 0.00 0.00 1.40
7110 10533 7.068692 ACTACCACGAAGCATATTTTACAAC 57.931 36.000 0.00 0.00 0.00 3.32
7122 10915 6.074888 GCATATTTTACAACGCATCATGAACC 60.075 38.462 0.00 0.00 0.00 3.62
7144 10937 6.940739 ACCTCCTATATCAATGCTGATGTAC 58.059 40.000 0.00 0.00 42.48 2.90
7196 10989 3.197766 AGTTCTGTCAGGTTCAGTTCACA 59.802 43.478 0.00 0.00 34.86 3.58
7270 11065 3.565482 TCTTTGGTTGACTCATTGACAGC 59.435 43.478 0.00 0.00 0.00 4.40
7298 11093 1.004185 GATCACATCACGCTCACATGC 60.004 52.381 0.00 0.00 0.00 4.06
7420 11233 8.248253 ACGTATTCTGTACACATGTGATCTTAA 58.752 33.333 31.94 18.63 0.00 1.85
7422 11235 6.944557 TTCTGTACACATGTGATCTTAACG 57.055 37.500 31.94 11.11 0.00 3.18
7481 11294 7.390440 CCCAAACTGACAGACAAACATCTTATA 59.610 37.037 10.08 0.00 0.00 0.98
7482 11295 8.950210 CCAAACTGACAGACAAACATCTTATAT 58.050 33.333 10.08 0.00 0.00 0.86
7489 11302 9.265901 GACAGACAAACATCTTATATAGCATGT 57.734 33.333 0.00 3.77 0.00 3.21
7753 11573 6.645415 GTGGACCAGTATTACGGAATAAGATG 59.355 42.308 0.46 1.93 29.20 2.90
7759 11579 6.805271 CAGTATTACGGAATAAGATGGTACCG 59.195 42.308 7.57 0.00 44.77 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.893808 CTGATTTGGGGCGGATCCG 60.894 63.158 30.03 30.03 43.09 4.18
1 2 1.529244 CCTGATTTGGGGCGGATCC 60.529 63.158 0.00 0.00 0.00 3.36
2 3 2.196245 GCCTGATTTGGGGCGGATC 61.196 63.158 0.00 0.00 38.91 3.36
3 4 2.123726 GCCTGATTTGGGGCGGAT 60.124 61.111 0.00 0.00 38.91 4.18
7 8 3.140814 GTCGGCCTGATTTGGGGC 61.141 66.667 0.00 0.00 46.89 5.80
8 9 2.824041 CGTCGGCCTGATTTGGGG 60.824 66.667 0.00 0.00 0.00 4.96
9 10 2.824041 CCGTCGGCCTGATTTGGG 60.824 66.667 0.00 0.00 0.00 4.12
10 11 2.824041 CCCGTCGGCCTGATTTGG 60.824 66.667 5.50 4.14 0.00 3.28
11 12 2.046314 ACCCGTCGGCCTGATTTG 60.046 61.111 5.50 0.00 0.00 2.32
12 13 2.046314 CACCCGTCGGCCTGATTT 60.046 61.111 5.50 0.00 0.00 2.17
13 14 4.778143 GCACCCGTCGGCCTGATT 62.778 66.667 5.50 0.00 0.00 2.57
20 21 4.160635 GATTTGCGCACCCGTCGG 62.161 66.667 11.12 3.60 36.67 4.79
21 22 3.367051 CTGATTTGCGCACCCGTCG 62.367 63.158 11.12 0.00 36.67 5.12
22 23 2.480555 CTGATTTGCGCACCCGTC 59.519 61.111 11.12 6.57 36.67 4.79
23 24 3.055719 CCTGATTTGCGCACCCGT 61.056 61.111 11.12 0.00 36.67 5.28
24 25 3.055719 ACCTGATTTGCGCACCCG 61.056 61.111 11.12 0.00 37.57 5.28
25 26 2.568090 CACCTGATTTGCGCACCC 59.432 61.111 11.12 2.17 0.00 4.61
26 27 2.568090 CCACCTGATTTGCGCACC 59.432 61.111 11.12 2.61 0.00 5.01
27 28 2.126346 GCCACCTGATTTGCGCAC 60.126 61.111 11.12 0.00 0.00 5.34
28 29 3.372730 GGCCACCTGATTTGCGCA 61.373 61.111 5.66 5.66 0.00 6.09
29 30 4.481112 CGGCCACCTGATTTGCGC 62.481 66.667 2.24 0.00 0.00 6.09
30 31 3.055719 ACGGCCACCTGATTTGCG 61.056 61.111 2.24 0.00 0.00 4.85
31 32 2.568090 CACGGCCACCTGATTTGC 59.432 61.111 2.24 0.00 0.00 3.68
32 33 1.178534 AACCACGGCCACCTGATTTG 61.179 55.000 2.24 0.00 0.00 2.32
33 34 1.152830 AACCACGGCCACCTGATTT 59.847 52.632 2.24 0.00 0.00 2.17
34 35 1.603455 CAACCACGGCCACCTGATT 60.603 57.895 2.24 0.00 0.00 2.57
35 36 2.034066 CAACCACGGCCACCTGAT 59.966 61.111 2.24 0.00 0.00 2.90
36 37 4.263572 CCAACCACGGCCACCTGA 62.264 66.667 2.24 0.00 0.00 3.86
39 40 3.912745 CTACCCAACCACGGCCACC 62.913 68.421 2.24 0.00 0.00 4.61
40 41 2.359478 CTACCCAACCACGGCCAC 60.359 66.667 2.24 0.00 0.00 5.01
41 42 4.338710 GCTACCCAACCACGGCCA 62.339 66.667 2.24 0.00 0.00 5.36
42 43 3.971109 GAGCTACCCAACCACGGCC 62.971 68.421 0.00 0.00 0.00 6.13
43 44 2.436115 GAGCTACCCAACCACGGC 60.436 66.667 0.00 0.00 0.00 5.68
44 45 2.125673 CGAGCTACCCAACCACGG 60.126 66.667 0.00 0.00 0.00 4.94
45 46 2.125673 CCGAGCTACCCAACCACG 60.126 66.667 0.00 0.00 0.00 4.94
46 47 2.267961 CCCGAGCTACCCAACCAC 59.732 66.667 0.00 0.00 0.00 4.16
47 48 3.006728 CCCCGAGCTACCCAACCA 61.007 66.667 0.00 0.00 0.00 3.67
48 49 3.793888 CCCCCGAGCTACCCAACC 61.794 72.222 0.00 0.00 0.00 3.77
49 50 4.484872 GCCCCCGAGCTACCCAAC 62.485 72.222 0.00 0.00 0.00 3.77
106 107 3.367743 ACCGCCATTGCAGCTGTG 61.368 61.111 16.64 5.66 37.32 3.66
107 108 3.367743 CACCGCCATTGCAGCTGT 61.368 61.111 16.64 0.00 37.32 4.40
108 109 4.124351 CCACCGCCATTGCAGCTG 62.124 66.667 10.11 10.11 37.32 4.24
120 121 3.031417 ATTCTTCCCCTCGCCACCG 62.031 63.158 0.00 0.00 0.00 4.94
121 122 1.452108 CATTCTTCCCCTCGCCACC 60.452 63.158 0.00 0.00 0.00 4.61
122 123 1.452108 CCATTCTTCCCCTCGCCAC 60.452 63.158 0.00 0.00 0.00 5.01
123 124 2.679342 CCCATTCTTCCCCTCGCCA 61.679 63.158 0.00 0.00 0.00 5.69
124 125 2.193248 CCCATTCTTCCCCTCGCC 59.807 66.667 0.00 0.00 0.00 5.54
125 126 1.921869 TTCCCCATTCTTCCCCTCGC 61.922 60.000 0.00 0.00 0.00 5.03
126 127 0.181350 CTTCCCCATTCTTCCCCTCG 59.819 60.000 0.00 0.00 0.00 4.63
127 128 1.492599 CTCTTCCCCATTCTTCCCCTC 59.507 57.143 0.00 0.00 0.00 4.30
128 129 1.203622 ACTCTTCCCCATTCTTCCCCT 60.204 52.381 0.00 0.00 0.00 4.79
129 130 1.064389 CACTCTTCCCCATTCTTCCCC 60.064 57.143 0.00 0.00 0.00 4.81
130 131 1.064389 CCACTCTTCCCCATTCTTCCC 60.064 57.143 0.00 0.00 0.00 3.97
131 132 1.916181 TCCACTCTTCCCCATTCTTCC 59.084 52.381 0.00 0.00 0.00 3.46
132 133 2.840651 TCTCCACTCTTCCCCATTCTTC 59.159 50.000 0.00 0.00 0.00 2.87
133 134 2.921221 TCTCCACTCTTCCCCATTCTT 58.079 47.619 0.00 0.00 0.00 2.52
134 135 2.649742 TCTCCACTCTTCCCCATTCT 57.350 50.000 0.00 0.00 0.00 2.40
135 136 2.840651 TCTTCTCCACTCTTCCCCATTC 59.159 50.000 0.00 0.00 0.00 2.67
136 137 2.843113 CTCTTCTCCACTCTTCCCCATT 59.157 50.000 0.00 0.00 0.00 3.16
137 138 2.225753 ACTCTTCTCCACTCTTCCCCAT 60.226 50.000 0.00 0.00 0.00 4.00
138 139 1.150135 ACTCTTCTCCACTCTTCCCCA 59.850 52.381 0.00 0.00 0.00 4.96
139 140 1.552792 CACTCTTCTCCACTCTTCCCC 59.447 57.143 0.00 0.00 0.00 4.81
140 141 2.530701 TCACTCTTCTCCACTCTTCCC 58.469 52.381 0.00 0.00 0.00 3.97
141 142 4.608948 TTTCACTCTTCTCCACTCTTCC 57.391 45.455 0.00 0.00 0.00 3.46
142 143 6.284459 TCTTTTTCACTCTTCTCCACTCTTC 58.716 40.000 0.00 0.00 0.00 2.87
143 144 6.126911 ACTCTTTTTCACTCTTCTCCACTCTT 60.127 38.462 0.00 0.00 0.00 2.85
144 145 5.365314 ACTCTTTTTCACTCTTCTCCACTCT 59.635 40.000 0.00 0.00 0.00 3.24
145 146 5.465056 CACTCTTTTTCACTCTTCTCCACTC 59.535 44.000 0.00 0.00 0.00 3.51
146 147 5.363939 CACTCTTTTTCACTCTTCTCCACT 58.636 41.667 0.00 0.00 0.00 4.00
147 148 4.513318 CCACTCTTTTTCACTCTTCTCCAC 59.487 45.833 0.00 0.00 0.00 4.02
148 149 4.408921 TCCACTCTTTTTCACTCTTCTCCA 59.591 41.667 0.00 0.00 0.00 3.86
149 150 4.962155 TCCACTCTTTTTCACTCTTCTCC 58.038 43.478 0.00 0.00 0.00 3.71
150 151 4.994217 CCTCCACTCTTTTTCACTCTTCTC 59.006 45.833 0.00 0.00 0.00 2.87
151 152 4.202409 CCCTCCACTCTTTTTCACTCTTCT 60.202 45.833 0.00 0.00 0.00 2.85
152 153 4.068599 CCCTCCACTCTTTTTCACTCTTC 58.931 47.826 0.00 0.00 0.00 2.87
153 154 3.181439 CCCCTCCACTCTTTTTCACTCTT 60.181 47.826 0.00 0.00 0.00 2.85
154 155 2.373502 CCCCTCCACTCTTTTTCACTCT 59.626 50.000 0.00 0.00 0.00 3.24
155 156 2.553247 CCCCCTCCACTCTTTTTCACTC 60.553 54.545 0.00 0.00 0.00 3.51
156 157 1.425448 CCCCCTCCACTCTTTTTCACT 59.575 52.381 0.00 0.00 0.00 3.41
157 158 1.145119 ACCCCCTCCACTCTTTTTCAC 59.855 52.381 0.00 0.00 0.00 3.18
158 159 1.144913 CACCCCCTCCACTCTTTTTCA 59.855 52.381 0.00 0.00 0.00 2.69
159 160 1.911057 CACCCCCTCCACTCTTTTTC 58.089 55.000 0.00 0.00 0.00 2.29
160 161 0.178961 GCACCCCCTCCACTCTTTTT 60.179 55.000 0.00 0.00 0.00 1.94
161 162 1.460699 GCACCCCCTCCACTCTTTT 59.539 57.895 0.00 0.00 0.00 2.27
162 163 2.895424 CGCACCCCCTCCACTCTTT 61.895 63.158 0.00 0.00 0.00 2.52
163 164 3.322466 CGCACCCCCTCCACTCTT 61.322 66.667 0.00 0.00 0.00 2.85
187 188 4.928140 TATCCGCCCGTCCCTCCC 62.928 72.222 0.00 0.00 0.00 4.30
188 189 3.303928 CTATCCGCCCGTCCCTCC 61.304 72.222 0.00 0.00 0.00 4.30
189 190 1.397390 TTTCTATCCGCCCGTCCCTC 61.397 60.000 0.00 0.00 0.00 4.30
190 191 0.979187 TTTTCTATCCGCCCGTCCCT 60.979 55.000 0.00 0.00 0.00 4.20
191 192 0.107557 TTTTTCTATCCGCCCGTCCC 60.108 55.000 0.00 0.00 0.00 4.46
192 193 1.296727 CTTTTTCTATCCGCCCGTCC 58.703 55.000 0.00 0.00 0.00 4.79
193 194 1.296727 CCTTTTTCTATCCGCCCGTC 58.703 55.000 0.00 0.00 0.00 4.79
194 195 0.746923 GCCTTTTTCTATCCGCCCGT 60.747 55.000 0.00 0.00 0.00 5.28
195 196 1.772063 CGCCTTTTTCTATCCGCCCG 61.772 60.000 0.00 0.00 0.00 6.13
196 197 0.746923 ACGCCTTTTTCTATCCGCCC 60.747 55.000 0.00 0.00 0.00 6.13
197 198 0.656259 GACGCCTTTTTCTATCCGCC 59.344 55.000 0.00 0.00 0.00 6.13
198 199 0.656259 GGACGCCTTTTTCTATCCGC 59.344 55.000 0.00 0.00 0.00 5.54
199 200 0.928229 CGGACGCCTTTTTCTATCCG 59.072 55.000 0.00 0.00 42.69 4.18
200 201 1.664151 CACGGACGCCTTTTTCTATCC 59.336 52.381 0.00 0.00 0.00 2.59
201 202 2.093783 CACACGGACGCCTTTTTCTATC 59.906 50.000 0.00 0.00 0.00 2.08
202 203 2.073816 CACACGGACGCCTTTTTCTAT 58.926 47.619 0.00 0.00 0.00 1.98
203 204 1.504359 CACACGGACGCCTTTTTCTA 58.496 50.000 0.00 0.00 0.00 2.10
204 205 1.782028 GCACACGGACGCCTTTTTCT 61.782 55.000 0.00 0.00 0.00 2.52
205 206 1.370051 GCACACGGACGCCTTTTTC 60.370 57.895 0.00 0.00 0.00 2.29
206 207 2.719354 GCACACGGACGCCTTTTT 59.281 55.556 0.00 0.00 0.00 1.94
207 208 3.284449 GGCACACGGACGCCTTTT 61.284 61.111 4.19 0.00 45.29 2.27
270 271 4.595538 AAACGGACAGCACGCGGA 62.596 61.111 12.47 0.00 34.00 5.54
271 272 4.072088 GAAACGGACAGCACGCGG 62.072 66.667 12.47 0.00 34.00 6.46
272 273 3.334751 TGAAACGGACAGCACGCG 61.335 61.111 3.53 3.53 34.00 6.01
273 274 2.248431 GTGAAACGGACAGCACGC 59.752 61.111 0.00 0.00 34.00 5.34
274 275 1.557443 GAGGTGAAACGGACAGCACG 61.557 60.000 0.00 0.00 38.12 5.34
275 276 0.531974 TGAGGTGAAACGGACAGCAC 60.532 55.000 0.00 0.00 38.12 4.40
276 277 0.179234 TTGAGGTGAAACGGACAGCA 59.821 50.000 0.00 0.00 38.12 4.41
277 278 1.305201 TTTGAGGTGAAACGGACAGC 58.695 50.000 0.00 0.00 38.12 4.40
278 279 2.287009 GCTTTTGAGGTGAAACGGACAG 60.287 50.000 0.00 0.00 38.12 3.51
279 280 1.673920 GCTTTTGAGGTGAAACGGACA 59.326 47.619 0.00 0.00 38.12 4.02
280 281 1.333791 CGCTTTTGAGGTGAAACGGAC 60.334 52.381 0.00 0.00 38.12 4.79
281 282 0.941542 CGCTTTTGAGGTGAAACGGA 59.058 50.000 0.00 0.00 38.12 4.69
282 283 0.040425 CCGCTTTTGAGGTGAAACGG 60.040 55.000 0.00 0.00 38.12 4.44
283 284 0.660300 GCCGCTTTTGAGGTGAAACG 60.660 55.000 0.00 0.00 41.74 3.60
284 285 3.179433 GCCGCTTTTGAGGTGAAAC 57.821 52.632 0.00 0.00 41.74 2.78
289 290 1.805428 ATTTGCGCCGCTTTTGAGGT 61.805 50.000 11.67 0.00 41.74 3.85
290 291 0.667184 AATTTGCGCCGCTTTTGAGG 60.667 50.000 11.67 0.00 42.66 3.86
291 292 1.136557 CAAATTTGCGCCGCTTTTGAG 60.137 47.619 20.21 1.82 31.05 3.02
292 293 0.857935 CAAATTTGCGCCGCTTTTGA 59.142 45.000 20.21 0.00 31.05 2.69
293 294 0.857935 TCAAATTTGCGCCGCTTTTG 59.142 45.000 11.67 16.75 0.00 2.44
294 295 1.260297 GTTCAAATTTGCGCCGCTTTT 59.740 42.857 11.67 5.03 0.00 2.27
295 296 0.858583 GTTCAAATTTGCGCCGCTTT 59.141 45.000 11.67 0.00 0.00 3.51
296 297 0.943835 GGTTCAAATTTGCGCCGCTT 60.944 50.000 11.67 0.00 0.00 4.68
297 298 1.372872 GGTTCAAATTTGCGCCGCT 60.373 52.632 11.67 0.00 0.00 5.52
298 299 2.715849 CGGTTCAAATTTGCGCCGC 61.716 57.895 27.44 0.00 37.95 6.53
299 300 2.085844 CCGGTTCAAATTTGCGCCG 61.086 57.895 29.62 29.62 41.39 6.46
300 301 1.736282 CCCGGTTCAAATTTGCGCC 60.736 57.895 13.54 15.13 0.00 6.53
301 302 1.736282 CCCCGGTTCAAATTTGCGC 60.736 57.895 13.54 0.00 0.00 6.09
302 303 0.530288 ATCCCCGGTTCAAATTTGCG 59.470 50.000 13.54 10.96 0.00 4.85
303 304 1.405391 CCATCCCCGGTTCAAATTTGC 60.405 52.381 13.54 0.27 0.00 3.68
304 305 1.206849 CCCATCCCCGGTTCAAATTTG 59.793 52.381 12.15 12.15 0.00 2.32
305 306 1.203250 ACCCATCCCCGGTTCAAATTT 60.203 47.619 0.00 0.00 0.00 1.82
306 307 0.411848 ACCCATCCCCGGTTCAAATT 59.588 50.000 0.00 0.00 0.00 1.82
307 308 0.033503 GACCCATCCCCGGTTCAAAT 60.034 55.000 0.00 0.00 32.27 2.32
308 309 1.381076 GACCCATCCCCGGTTCAAA 59.619 57.895 0.00 0.00 32.27 2.69
309 310 2.961893 CGACCCATCCCCGGTTCAA 61.962 63.158 0.00 0.00 32.27 2.69
310 311 3.395702 CGACCCATCCCCGGTTCA 61.396 66.667 0.00 0.00 32.27 3.18
311 312 2.187896 TTTCGACCCATCCCCGGTTC 62.188 60.000 0.00 0.00 32.27 3.62
312 313 2.193087 CTTTCGACCCATCCCCGGTT 62.193 60.000 0.00 0.00 32.27 4.44
313 314 2.608368 TTTCGACCCATCCCCGGT 60.608 61.111 0.00 0.00 35.88 5.28
314 315 2.189521 CTTTCGACCCATCCCCGG 59.810 66.667 0.00 0.00 0.00 5.73
315 316 2.513897 GCTTTCGACCCATCCCCG 60.514 66.667 0.00 0.00 0.00 5.73
316 317 2.513897 CGCTTTCGACCCATCCCC 60.514 66.667 0.00 0.00 38.10 4.81
317 318 2.513897 CCGCTTTCGACCCATCCC 60.514 66.667 0.00 0.00 38.10 3.85
318 319 1.814169 GTCCGCTTTCGACCCATCC 60.814 63.158 0.00 0.00 38.10 3.51
319 320 0.672401 TTGTCCGCTTTCGACCCATC 60.672 55.000 0.00 0.00 38.10 3.51
320 321 0.250553 TTTGTCCGCTTTCGACCCAT 60.251 50.000 0.00 0.00 38.10 4.00
321 322 0.464013 TTTTGTCCGCTTTCGACCCA 60.464 50.000 0.00 0.00 38.10 4.51
322 323 0.664224 TTTTTGTCCGCTTTCGACCC 59.336 50.000 0.00 0.00 38.10 4.46
323 324 1.332686 ACTTTTTGTCCGCTTTCGACC 59.667 47.619 0.00 0.00 38.10 4.79
324 325 2.636519 GACTTTTTGTCCGCTTTCGAC 58.363 47.619 0.00 0.00 39.69 4.20
334 335 3.231160 CGGCATAAACGGACTTTTTGTC 58.769 45.455 0.00 0.00 44.63 3.18
335 336 2.606065 GCGGCATAAACGGACTTTTTGT 60.606 45.455 0.00 0.00 0.00 2.83
336 337 1.982913 GCGGCATAAACGGACTTTTTG 59.017 47.619 0.00 0.00 0.00 2.44
337 338 1.400500 CGCGGCATAAACGGACTTTTT 60.400 47.619 0.00 0.00 0.00 1.94
338 339 0.167251 CGCGGCATAAACGGACTTTT 59.833 50.000 0.00 0.00 0.00 2.27
339 340 1.791662 CGCGGCATAAACGGACTTT 59.208 52.632 0.00 0.00 0.00 2.66
340 341 2.746803 GCGCGGCATAAACGGACTT 61.747 57.895 8.83 0.00 0.00 3.01
341 342 3.192922 GCGCGGCATAAACGGACT 61.193 61.111 8.83 0.00 0.00 3.85
342 343 4.568876 CGCGCGGCATAAACGGAC 62.569 66.667 24.84 0.00 0.00 4.79
358 359 2.859273 AAGAATCAGACGGCCCAGCG 62.859 60.000 0.00 0.00 0.00 5.18
359 360 1.078143 AAGAATCAGACGGCCCAGC 60.078 57.895 0.00 0.00 0.00 4.85
360 361 0.462759 GGAAGAATCAGACGGCCCAG 60.463 60.000 0.00 0.00 0.00 4.45
361 362 1.198094 TGGAAGAATCAGACGGCCCA 61.198 55.000 0.00 0.00 0.00 5.36
362 363 0.181350 ATGGAAGAATCAGACGGCCC 59.819 55.000 0.00 0.00 0.00 5.80
363 364 2.044123 AATGGAAGAATCAGACGGCC 57.956 50.000 0.00 0.00 0.00 6.13
364 365 4.201920 GGTAAAATGGAAGAATCAGACGGC 60.202 45.833 0.00 0.00 0.00 5.68
365 366 4.335594 GGGTAAAATGGAAGAATCAGACGG 59.664 45.833 0.00 0.00 0.00 4.79
366 367 4.941263 TGGGTAAAATGGAAGAATCAGACG 59.059 41.667 0.00 0.00 0.00 4.18
367 368 6.834168 TTGGGTAAAATGGAAGAATCAGAC 57.166 37.500 0.00 0.00 0.00 3.51
368 369 6.072175 CGTTTGGGTAAAATGGAAGAATCAGA 60.072 38.462 0.00 0.00 32.05 3.27
369 370 6.092748 CGTTTGGGTAAAATGGAAGAATCAG 58.907 40.000 0.00 0.00 32.05 2.90
370 371 6.019779 CGTTTGGGTAAAATGGAAGAATCA 57.980 37.500 0.00 0.00 32.05 2.57
379 380 1.267261 TGCGTCCGTTTGGGTAAAATG 59.733 47.619 0.00 0.00 37.00 2.32
380 381 1.606903 TGCGTCCGTTTGGGTAAAAT 58.393 45.000 0.00 0.00 37.00 1.82
381 382 1.606903 ATGCGTCCGTTTGGGTAAAA 58.393 45.000 0.00 0.00 37.00 1.52
382 383 1.606903 AATGCGTCCGTTTGGGTAAA 58.393 45.000 0.00 0.00 37.00 2.01
383 384 2.028294 TCTAATGCGTCCGTTTGGGTAA 60.028 45.455 0.00 0.00 37.00 2.85
384 385 1.549620 TCTAATGCGTCCGTTTGGGTA 59.450 47.619 0.00 0.00 37.00 3.69
385 386 0.322322 TCTAATGCGTCCGTTTGGGT 59.678 50.000 0.00 0.00 37.00 4.51
386 387 1.444836 TTCTAATGCGTCCGTTTGGG 58.555 50.000 0.00 0.00 35.24 4.12
387 388 2.223249 CCATTCTAATGCGTCCGTTTGG 60.223 50.000 0.00 0.00 35.08 3.28
388 389 2.223249 CCCATTCTAATGCGTCCGTTTG 60.223 50.000 0.00 0.00 35.08 2.93
389 390 2.014128 CCCATTCTAATGCGTCCGTTT 58.986 47.619 0.00 0.00 35.08 3.60
390 391 1.663695 CCCATTCTAATGCGTCCGTT 58.336 50.000 0.00 0.00 35.08 4.44
391 392 0.179056 CCCCATTCTAATGCGTCCGT 60.179 55.000 0.00 0.00 35.08 4.69
392 393 0.179056 ACCCCATTCTAATGCGTCCG 60.179 55.000 0.00 0.00 35.08 4.79
393 394 1.594331 GACCCCATTCTAATGCGTCC 58.406 55.000 8.73 0.00 35.08 4.79
394 395 1.217882 CGACCCCATTCTAATGCGTC 58.782 55.000 9.44 9.44 35.08 5.19
395 396 0.814010 GCGACCCCATTCTAATGCGT 60.814 55.000 0.00 0.00 35.08 5.24
396 397 1.831389 CGCGACCCCATTCTAATGCG 61.831 60.000 0.00 0.00 38.28 4.73
397 398 1.507141 CCGCGACCCCATTCTAATGC 61.507 60.000 8.23 0.00 35.08 3.56
398 399 0.884704 CCCGCGACCCCATTCTAATG 60.885 60.000 8.23 0.00 36.17 1.90
399 400 1.450211 CCCGCGACCCCATTCTAAT 59.550 57.895 8.23 0.00 0.00 1.73
400 401 2.737881 CCCCGCGACCCCATTCTAA 61.738 63.158 8.23 0.00 0.00 2.10
401 402 3.158648 CCCCGCGACCCCATTCTA 61.159 66.667 8.23 0.00 0.00 2.10
414 415 2.536997 CTAAGGCCAACTCCACCCCG 62.537 65.000 5.01 0.00 0.00 5.73
415 416 1.303282 CTAAGGCCAACTCCACCCC 59.697 63.158 5.01 0.00 0.00 4.95
416 417 1.282382 TACTAAGGCCAACTCCACCC 58.718 55.000 5.01 0.00 0.00 4.61
417 418 2.940083 GCTTACTAAGGCCAACTCCACC 60.940 54.545 5.01 0.00 0.00 4.61
418 419 2.357075 GCTTACTAAGGCCAACTCCAC 58.643 52.381 5.01 0.00 0.00 4.02
419 420 2.781681 GCTTACTAAGGCCAACTCCA 57.218 50.000 5.01 0.00 0.00 3.86
428 429 1.588139 CCGCGTCGGCTTACTAAGG 60.588 63.158 4.92 0.00 41.17 2.69
429 430 3.993103 CCGCGTCGGCTTACTAAG 58.007 61.111 4.92 0.00 41.17 2.18
443 444 3.645268 ATGAAGGAAGGCCCACCGC 62.645 63.158 0.00 2.01 42.76 5.68
444 445 1.452108 GATGAAGGAAGGCCCACCG 60.452 63.158 0.00 0.00 42.76 4.94
445 446 1.076705 GGATGAAGGAAGGCCCACC 60.077 63.158 0.00 2.78 37.41 4.61
446 447 1.452108 CGGATGAAGGAAGGCCCAC 60.452 63.158 0.00 0.00 37.41 4.61
447 448 1.615124 TCGGATGAAGGAAGGCCCA 60.615 57.895 0.00 0.00 37.41 5.36
448 449 1.153147 GTCGGATGAAGGAAGGCCC 60.153 63.158 0.00 0.00 33.31 5.80
449 450 1.153147 GGTCGGATGAAGGAAGGCC 60.153 63.158 0.00 0.00 0.00 5.19
450 451 1.521681 CGGTCGGATGAAGGAAGGC 60.522 63.158 0.00 0.00 0.00 4.35
451 452 0.103208 CTCGGTCGGATGAAGGAAGG 59.897 60.000 0.00 0.00 0.00 3.46
452 453 0.103208 CCTCGGTCGGATGAAGGAAG 59.897 60.000 0.00 0.00 0.00 3.46
453 454 0.613853 ACCTCGGTCGGATGAAGGAA 60.614 55.000 8.84 0.00 0.00 3.36
454 455 1.000019 ACCTCGGTCGGATGAAGGA 60.000 57.895 8.84 0.00 0.00 3.36
511 517 2.350134 GTGGGAGGAACCGGGAAC 59.650 66.667 6.32 0.00 40.11 3.62
594 608 3.170490 ATCGATTGCCGGGGAGAGC 62.170 63.158 2.18 0.00 39.14 4.09
595 609 1.005630 GATCGATTGCCGGGGAGAG 60.006 63.158 2.18 0.00 39.14 3.20
596 610 2.507854 GGATCGATTGCCGGGGAGA 61.508 63.158 2.18 0.00 39.14 3.71
598 612 1.632018 AAAGGATCGATTGCCGGGGA 61.632 55.000 2.18 0.00 39.14 4.81
600 614 0.663153 GAAAAGGATCGATTGCCGGG 59.337 55.000 2.18 0.00 39.14 5.73
602 616 0.663153 GGGAAAAGGATCGATTGCCG 59.337 55.000 0.00 0.00 40.25 5.69
607 621 4.889995 GGAAAAGATGGGAAAAGGATCGAT 59.110 41.667 0.00 0.00 0.00 3.59
608 622 4.018415 AGGAAAAGATGGGAAAAGGATCGA 60.018 41.667 0.00 0.00 0.00 3.59
609 623 4.273318 AGGAAAAGATGGGAAAAGGATCG 58.727 43.478 0.00 0.00 0.00 3.69
610 624 5.954752 AGAAGGAAAAGATGGGAAAAGGATC 59.045 40.000 0.00 0.00 0.00 3.36
612 626 5.325239 GAGAAGGAAAAGATGGGAAAAGGA 58.675 41.667 0.00 0.00 0.00 3.36
613 627 4.156739 CGAGAAGGAAAAGATGGGAAAAGG 59.843 45.833 0.00 0.00 0.00 3.11
615 629 4.518970 CACGAGAAGGAAAAGATGGGAAAA 59.481 41.667 0.00 0.00 0.00 2.29
648 675 1.437986 GGTCGAGAACCCGAGATGG 59.562 63.158 0.00 0.00 42.85 3.51
655 682 4.754667 GTGGCCGGTCGAGAACCC 62.755 72.222 0.00 0.00 46.27 4.11
656 683 3.934391 CTGTGGCCGGTCGAGAACC 62.934 68.421 0.00 0.00 45.45 3.62
657 684 2.432628 CTGTGGCCGGTCGAGAAC 60.433 66.667 0.00 0.00 0.00 3.01
658 685 4.373116 GCTGTGGCCGGTCGAGAA 62.373 66.667 9.02 0.00 0.00 2.87
668 695 0.682209 ATCAGATTGTGGGCTGTGGC 60.682 55.000 0.00 0.00 33.90 5.01
669 696 1.100510 CATCAGATTGTGGGCTGTGG 58.899 55.000 0.00 0.00 33.90 4.17
670 697 1.100510 CCATCAGATTGTGGGCTGTG 58.899 55.000 0.00 0.00 33.90 3.66
671 698 0.682209 GCCATCAGATTGTGGGCTGT 60.682 55.000 2.76 0.00 41.39 4.40
672 699 2.112898 GCCATCAGATTGTGGGCTG 58.887 57.895 2.76 0.00 41.39 4.85
673 700 4.672251 GCCATCAGATTGTGGGCT 57.328 55.556 2.76 0.00 41.39 5.19
674 701 0.394762 TCAGCCATCAGATTGTGGGC 60.395 55.000 1.83 1.83 44.92 5.36
675 702 1.954382 CATCAGCCATCAGATTGTGGG 59.046 52.381 0.00 0.00 36.00 4.61
676 703 1.337071 GCATCAGCCATCAGATTGTGG 59.663 52.381 0.00 0.00 38.55 4.17
677 704 2.776312 GCATCAGCCATCAGATTGTG 57.224 50.000 0.00 0.00 33.58 3.33
718 745 0.382515 CTGTGTCCTACTCCTAGCGC 59.617 60.000 0.00 0.00 0.00 5.92
723 750 1.261238 GGCTGCTGTGTCCTACTCCT 61.261 60.000 0.00 0.00 0.00 3.69
727 754 1.743252 GCTGGCTGCTGTGTCCTAC 60.743 63.158 9.31 0.00 38.95 3.18
728 755 2.176314 CTGCTGGCTGCTGTGTCCTA 62.176 60.000 17.45 0.00 43.37 2.94
729 756 3.548306 CTGCTGGCTGCTGTGTCCT 62.548 63.158 17.45 0.00 43.37 3.85
730 757 3.054503 CTGCTGGCTGCTGTGTCC 61.055 66.667 17.45 0.00 43.37 4.02
731 758 3.735029 GCTGCTGGCTGCTGTGTC 61.735 66.667 20.81 4.78 43.37 3.67
860 897 2.614734 CGTGGATGGATGGATGATGGAG 60.615 54.545 0.00 0.00 0.00 3.86
867 904 2.427320 CGCCGTGGATGGATGGAT 59.573 61.111 0.00 0.00 0.00 3.41
868 905 3.860605 CCGCCGTGGATGGATGGA 61.861 66.667 0.00 0.00 42.00 3.41
869 906 4.935495 CCCGCCGTGGATGGATGG 62.935 72.222 0.00 0.00 42.00 3.51
897 935 3.941188 AGTCAGTGTGCGGGGTGG 61.941 66.667 0.00 0.00 0.00 4.61
899 937 2.842462 TCAGTCAGTGTGCGGGGT 60.842 61.111 0.00 0.00 0.00 4.95
903 941 1.825285 GCAGTGTCAGTCAGTGTGCG 61.825 60.000 4.66 0.00 46.08 5.34
904 942 1.502163 GGCAGTGTCAGTCAGTGTGC 61.502 60.000 4.66 0.00 46.08 4.57
911 949 4.275524 GCAGAGGCAGTGTCAGTC 57.724 61.111 0.00 0.00 40.72 3.51
921 959 2.875317 GGCTTAAATAGAGTGCAGAGGC 59.125 50.000 0.00 0.00 41.68 4.70
922 960 3.873952 GTGGCTTAAATAGAGTGCAGAGG 59.126 47.826 0.00 0.00 0.00 3.69
929 975 2.093128 CCGGTGGTGGCTTAAATAGAGT 60.093 50.000 0.00 0.00 0.00 3.24
1230 1313 2.807045 CGCAGCAGACGAGGTCAC 60.807 66.667 0.00 0.00 34.60 3.67
1373 1463 3.974912 TGCATCACGAAAATTTGAAGCA 58.025 36.364 4.17 4.17 42.47 3.91
1625 1791 1.812571 CCTGAAACCCACACACATAGC 59.187 52.381 0.00 0.00 0.00 2.97
1628 1794 0.178964 CCCCTGAAACCCACACACAT 60.179 55.000 0.00 0.00 0.00 3.21
1661 1827 3.275143 CCGTTCCAGGTATGTAATGCAA 58.725 45.455 0.00 0.00 0.00 4.08
1696 1862 2.354704 CCTCACCTTGAATGGCTCGTTA 60.355 50.000 0.00 0.00 0.00 3.18
1732 1906 7.120726 GGCAAAACTTACCACAAGACACTATAT 59.879 37.037 0.00 0.00 0.00 0.86
1734 1908 5.240844 GGCAAAACTTACCACAAGACACTAT 59.759 40.000 0.00 0.00 0.00 2.12
1741 1915 1.679153 ACCGGCAAAACTTACCACAAG 59.321 47.619 0.00 0.00 0.00 3.16
1751 1925 0.391228 ATCACCCAAACCGGCAAAAC 59.609 50.000 0.00 0.00 0.00 2.43
1755 1929 0.609681 GGTTATCACCCAAACCGGCA 60.610 55.000 0.00 0.00 37.03 5.69
1756 1930 2.186155 GGTTATCACCCAAACCGGC 58.814 57.895 0.00 0.00 37.03 6.13
1779 1953 4.926244 AGACTGCATAATAGTGAGTGTCG 58.074 43.478 0.00 0.00 0.00 4.35
1787 1961 7.117285 TCTTCATGTGAGACTGCATAATAGT 57.883 36.000 0.00 0.00 0.00 2.12
1788 1962 6.145858 GCTCTTCATGTGAGACTGCATAATAG 59.854 42.308 17.94 0.00 33.68 1.73
1831 2022 2.283617 CCGCTCTTTCTTCATCATGTCG 59.716 50.000 0.00 0.00 0.00 4.35
1904 2095 4.386049 ACGAACATCGATCTCAAAGTTGAC 59.614 41.667 6.78 0.00 43.74 3.18
1962 2156 5.471797 TCGTTTTCAATCTGGAAAGCACATA 59.528 36.000 0.00 0.00 37.71 2.29
1969 2165 6.234920 TCCATACTCGTTTTCAATCTGGAAA 58.765 36.000 0.00 0.00 35.11 3.13
1984 2180 6.586463 ACGCTTGTTGATAATATCCATACTCG 59.414 38.462 0.00 0.00 0.00 4.18
2151 2349 5.065218 CCATGTCTTAACTGTTGCATACTCC 59.935 44.000 2.69 0.00 0.00 3.85
2153 2351 5.804639 TCCATGTCTTAACTGTTGCATACT 58.195 37.500 2.69 0.00 0.00 2.12
2154 2352 6.683974 ATCCATGTCTTAACTGTTGCATAC 57.316 37.500 2.69 0.00 0.00 2.39
2179 2378 7.734924 TGAGTGAAAATATGTATGATGAGGC 57.265 36.000 0.00 0.00 0.00 4.70
2284 2658 3.444742 CACAATTTCAGGAGCAAGCCATA 59.555 43.478 0.00 0.00 0.00 2.74
2393 2767 9.601217 ACGAAGCTACATCTACTGATTTTTATT 57.399 29.630 0.00 0.00 0.00 1.40
2394 2768 9.601217 AACGAAGCTACATCTACTGATTTTTAT 57.399 29.630 0.00 0.00 0.00 1.40
2395 2769 8.997621 AACGAAGCTACATCTACTGATTTTTA 57.002 30.769 0.00 0.00 0.00 1.52
2435 2810 2.111582 GGGCAAGAGCAGCACTAGC 61.112 63.158 0.00 0.00 44.61 3.42
2439 2814 1.002134 TAAGGGGCAAGAGCAGCAC 60.002 57.895 0.00 0.00 44.61 4.40
2447 2822 1.846439 TCCTGATTCCTAAGGGGCAAG 59.154 52.381 0.00 0.00 34.08 4.01
2448 2823 1.564348 GTCCTGATTCCTAAGGGGCAA 59.436 52.381 0.00 0.00 34.08 4.52
2449 2824 1.213296 GTCCTGATTCCTAAGGGGCA 58.787 55.000 0.00 0.00 34.08 5.36
2450 2825 1.141858 CAGTCCTGATTCCTAAGGGGC 59.858 57.143 0.00 0.00 34.08 5.80
2451 2826 2.482494 ACAGTCCTGATTCCTAAGGGG 58.518 52.381 0.40 0.00 34.08 4.79
2452 2827 4.962995 TCTTACAGTCCTGATTCCTAAGGG 59.037 45.833 0.40 0.00 34.08 3.95
2453 2828 5.659079 ACTCTTACAGTCCTGATTCCTAAGG 59.341 44.000 0.40 0.00 34.65 2.69
2598 3185 1.745653 GTCAGTGAATAGCTTTGCCCC 59.254 52.381 0.00 0.00 0.00 5.80
2601 3188 1.464608 TGCGTCAGTGAATAGCTTTGC 59.535 47.619 14.80 0.00 0.00 3.68
2604 3191 2.738846 CAGTTGCGTCAGTGAATAGCTT 59.261 45.455 14.80 2.28 0.00 3.74
2606 3193 2.092838 GTCAGTTGCGTCAGTGAATAGC 59.907 50.000 0.00 1.74 0.00 2.97
2614 3201 1.678360 GCAAATGTCAGTTGCGTCAG 58.322 50.000 20.85 0.00 41.74 3.51
3034 3732 4.634443 ACCGTAATATTGGAGTGTCTTTGC 59.366 41.667 0.00 0.00 0.00 3.68
3120 3829 8.755028 TGAAATCATCATCAGTTTCCAATCAAT 58.245 29.630 0.00 0.00 31.50 2.57
3148 3857 6.826231 TGAAGACTTGGTCAATTTTCAGTACA 59.174 34.615 0.00 0.00 34.60 2.90
3149 3858 7.259290 TGAAGACTTGGTCAATTTTCAGTAC 57.741 36.000 0.00 0.00 34.60 2.73
3368 4084 3.237746 TCAGATGTGCCCATTTTGGAAA 58.762 40.909 0.00 0.00 40.96 3.13
3905 5229 7.147976 AGGCTGAATGTGTTTTATTCTGAAAC 58.852 34.615 0.00 0.00 36.29 2.78
3941 6201 7.496529 TTCATTTTCTCAGAAGAACGATGTT 57.503 32.000 0.00 0.00 41.23 2.71
3985 6255 7.278868 CGTGAGCTATACTTTTCTCCTTTTCAT 59.721 37.037 0.00 0.00 0.00 2.57
4086 6356 6.554334 AGAGAGAGTCGTGAGCTAAATATC 57.446 41.667 0.00 0.00 0.00 1.63
4638 7326 4.676924 GCTGAATTAGAACTGCACAAACAC 59.323 41.667 0.00 0.00 0.00 3.32
4753 7515 2.281762 GCTGACGACGTATGATTCAACC 59.718 50.000 0.00 0.00 0.00 3.77
5037 8205 6.543430 AAATAGCATGGGCATGTAAAGAAA 57.457 33.333 0.00 0.00 44.61 2.52
5129 8333 6.486993 TCATGTGACCTGCTACTAGTACATAG 59.513 42.308 0.00 0.00 37.53 2.23
5132 8336 4.595986 TCATGTGACCTGCTACTAGTACA 58.404 43.478 0.00 2.13 0.00 2.90
5133 8337 5.578005 TTCATGTGACCTGCTACTAGTAC 57.422 43.478 0.00 0.00 0.00 2.73
5134 8338 5.715279 ACTTTCATGTGACCTGCTACTAGTA 59.285 40.000 1.89 1.89 0.00 1.82
5135 8339 4.528596 ACTTTCATGTGACCTGCTACTAGT 59.471 41.667 0.00 0.00 0.00 2.57
5139 8343 6.554334 TTTAACTTTCATGTGACCTGCTAC 57.446 37.500 0.00 0.00 0.00 3.58
5263 8469 4.216257 AGACAAGTCCATCGTTCCATTTTG 59.784 41.667 0.00 0.00 0.00 2.44
5292 8498 4.016444 ACAGTACCTTGTATGCCCAATTG 58.984 43.478 0.00 0.00 0.00 2.32
5335 8541 9.354673 TCCAAATTGAGTTCTCAATAGAAGTTT 57.645 29.630 22.79 13.29 43.93 2.66
5395 8629 6.373005 TCTGGACATAAAAATCAGGAGTCA 57.627 37.500 0.00 0.00 0.00 3.41
5396 8630 7.872113 ATTCTGGACATAAAAATCAGGAGTC 57.128 36.000 0.00 0.00 0.00 3.36
5423 8658 4.391405 ACACACTCATCTCGATTATGCA 57.609 40.909 0.00 0.00 0.00 3.96
5424 8659 5.063944 ACAAACACACTCATCTCGATTATGC 59.936 40.000 3.59 0.00 0.00 3.14
5438 8673 7.777095 ACCAACAAATACATAACAAACACACT 58.223 30.769 0.00 0.00 0.00 3.55
5490 8735 4.261031 CCCTTGATCGGGCTTAAATAAACG 60.261 45.833 0.00 0.00 37.41 3.60
5588 8833 8.470002 TGAAGAAATCATCGAGAGTAAAGATCA 58.530 33.333 0.00 0.00 31.50 2.92
5622 8869 6.821160 GTGAAGAAACCATCCTTTTCCAAAAA 59.179 34.615 0.00 0.00 34.07 1.94
5623 8870 6.070538 TGTGAAGAAACCATCCTTTTCCAAAA 60.071 34.615 0.00 0.00 34.07 2.44
5624 8871 5.423610 TGTGAAGAAACCATCCTTTTCCAAA 59.576 36.000 0.00 0.00 34.07 3.28
5625 8872 4.959210 TGTGAAGAAACCATCCTTTTCCAA 59.041 37.500 0.00 0.00 34.07 3.53
5626 8873 4.541705 TGTGAAGAAACCATCCTTTTCCA 58.458 39.130 0.00 0.00 34.07 3.53
5627 8874 5.243730 TGATGTGAAGAAACCATCCTTTTCC 59.756 40.000 0.00 0.00 35.26 3.13
5628 8875 6.331369 TGATGTGAAGAAACCATCCTTTTC 57.669 37.500 0.00 0.00 35.26 2.29
5629 8876 6.923199 ATGATGTGAAGAAACCATCCTTTT 57.077 33.333 0.00 0.00 35.26 2.27
5630 8877 6.923199 AATGATGTGAAGAAACCATCCTTT 57.077 33.333 0.00 0.00 35.26 3.11
5631 8878 6.094048 CGTAATGATGTGAAGAAACCATCCTT 59.906 38.462 0.00 0.00 35.26 3.36
5632 8879 5.586243 CGTAATGATGTGAAGAAACCATCCT 59.414 40.000 0.00 0.00 35.26 3.24
5633 8880 5.354234 ACGTAATGATGTGAAGAAACCATCC 59.646 40.000 0.00 0.00 35.26 3.51
5634 8881 6.128282 ACACGTAATGATGTGAAGAAACCATC 60.128 38.462 9.57 0.00 44.18 3.51
5635 8882 5.705441 ACACGTAATGATGTGAAGAAACCAT 59.295 36.000 9.57 0.00 44.18 3.55
5636 8883 5.060506 ACACGTAATGATGTGAAGAAACCA 58.939 37.500 9.57 0.00 44.18 3.67
5637 8884 5.607119 ACACGTAATGATGTGAAGAAACC 57.393 39.130 9.57 0.00 44.18 3.27
5638 8885 6.146510 TGGTACACGTAATGATGTGAAGAAAC 59.853 38.462 9.57 0.09 44.18 2.78
5639 8886 6.224584 TGGTACACGTAATGATGTGAAGAAA 58.775 36.000 9.57 0.00 44.18 2.52
5640 8887 5.785243 TGGTACACGTAATGATGTGAAGAA 58.215 37.500 9.57 0.00 44.18 2.52
5641 8888 5.394224 TGGTACACGTAATGATGTGAAGA 57.606 39.130 9.57 0.00 44.18 2.87
5642 8889 6.238103 GGATTGGTACACGTAATGATGTGAAG 60.238 42.308 9.57 0.00 44.18 3.02
5643 8890 5.583061 GGATTGGTACACGTAATGATGTGAA 59.417 40.000 9.57 0.00 44.18 3.18
5644 8891 5.113383 GGATTGGTACACGTAATGATGTGA 58.887 41.667 9.57 0.00 44.18 3.58
5645 8892 4.873259 TGGATTGGTACACGTAATGATGTG 59.127 41.667 0.35 0.35 46.41 3.21
5646 8893 5.092554 TGGATTGGTACACGTAATGATGT 57.907 39.130 0.00 0.00 39.29 3.06
5647 8894 6.038161 ACATTGGATTGGTACACGTAATGATG 59.962 38.462 7.21 2.44 39.29 3.07
5693 8946 1.676014 GGGTCATCTCCTTGTGGAACG 60.676 57.143 0.00 0.00 42.66 3.95
5882 9135 3.251571 GTCACGGTACCATCTTTGAGTC 58.748 50.000 13.54 0.00 0.00 3.36
5897 9150 1.963855 TGCCAAATGTCGGTCACGG 60.964 57.895 0.00 0.00 41.39 4.94
5979 9240 3.081804 GGGACATGGTACCTTTGTTCAG 58.918 50.000 21.38 4.66 32.80 3.02
6088 9349 1.368850 GCAAACACTTGTCGCGACC 60.369 57.895 34.34 18.00 34.79 4.79
6172 9436 4.586841 TGTACTTTTGCTGCTAATGGGTTT 59.413 37.500 12.61 0.00 0.00 3.27
6230 9494 0.798776 CCGAAGCTCGCAAACTTGAT 59.201 50.000 0.00 0.00 38.82 2.57
6354 9618 0.031585 CGGATAAGAATCGGGTGCGA 59.968 55.000 0.00 0.00 32.44 5.10
6361 9625 2.333389 CGAGTCCCGGATAAGAATCG 57.667 55.000 12.53 12.53 42.99 3.34
6375 9639 3.993081 CCAGATTTGATGCCTATCGAGTC 59.007 47.826 0.00 0.00 35.00 3.36
6399 9663 1.726791 CACGTGCATCAACACTCCTAC 59.273 52.381 0.82 0.00 38.45 3.18
6496 9761 3.686726 GTCTAATCTGTTCCCAGTTGCAG 59.313 47.826 0.00 0.00 39.82 4.41
6603 9905 8.934825 GGTCAATCAAATCTTAGATCTCTATGC 58.065 37.037 0.00 0.00 0.00 3.14
6657 9959 4.013050 GCCTGCAGAGAATAAAAAGGACT 58.987 43.478 17.39 0.00 0.00 3.85
6848 10150 1.963338 AGCACTGCAGCTTCCGAAC 60.963 57.895 15.27 0.00 43.70 3.95
6891 10254 0.984995 GTAGCCTTCCACTTCCAGGT 59.015 55.000 0.00 0.00 0.00 4.00
6913 10325 8.299570 GCTCAAAAGAAATCTGAACCTAAATCA 58.700 33.333 0.00 0.00 0.00 2.57
6974 10387 0.464373 ACCATGGCATCGTCCATCAC 60.464 55.000 13.04 0.00 44.63 3.06
6975 10388 0.464193 CACCATGGCATCGTCCATCA 60.464 55.000 13.04 0.00 44.63 3.07
6989 10402 2.488528 CCAGCATCCTGAATAGCACCAT 60.489 50.000 0.00 0.00 41.77 3.55
7010 10428 2.121786 CAACGCATTTGCTCATATGGC 58.878 47.619 2.13 6.08 39.32 4.40
7043 10461 5.621193 ACTCATGGCCACATTAGGTATAAC 58.379 41.667 8.16 0.00 33.56 1.89
7104 10527 3.006940 GGAGGTTCATGATGCGTTGTAA 58.993 45.455 0.00 0.00 0.00 2.41
7110 10533 5.077134 TGATATAGGAGGTTCATGATGCG 57.923 43.478 0.00 0.00 0.00 4.73
7122 10915 7.544915 CACAGTACATCAGCATTGATATAGGAG 59.455 40.741 0.00 0.00 42.12 3.69
7144 10937 6.998968 AATTAAGCAAGAGATTCCTCACAG 57.001 37.500 0.00 0.00 41.87 3.66
7289 11084 3.503363 GTCGCCCTGCATGTGAGC 61.503 66.667 0.00 0.00 0.00 4.26
7298 11093 0.461548 TTAGCTCAGATGTCGCCCTG 59.538 55.000 0.00 0.00 0.00 4.45
7420 11233 0.530744 TTCCGTCAGATGCTTAGCGT 59.469 50.000 0.00 0.00 0.00 5.07
7422 11235 0.933796 GCTTCCGTCAGATGCTTAGC 59.066 55.000 0.00 0.00 41.35 3.09
7481 11294 9.678260 AAGAAGAATCTGAACTTTACATGCTAT 57.322 29.630 0.00 0.00 35.59 2.97
7482 11295 9.155975 GAAGAAGAATCTGAACTTTACATGCTA 57.844 33.333 0.00 0.00 35.59 3.49
7483 11296 7.663081 TGAAGAAGAATCTGAACTTTACATGCT 59.337 33.333 0.00 0.00 35.59 3.79
7484 11297 7.810658 TGAAGAAGAATCTGAACTTTACATGC 58.189 34.615 0.00 0.00 35.59 4.06
7505 11318 4.154918 GCCAACCTGATGACTTTACTGAAG 59.845 45.833 0.00 0.00 41.32 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.