Multiple sequence alignment - TraesCS3D01G378700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G378700 chr3D 100.000 5388 0 0 1 5388 495915289 495920676 0.000000e+00 9950.0
1 TraesCS3D01G378700 chr3A 90.678 2360 123 44 1 2304 635147494 635149812 0.000000e+00 3049.0
2 TraesCS3D01G378700 chr3A 87.055 1545 101 54 2362 3870 635149813 635151294 0.000000e+00 1653.0
3 TraesCS3D01G378700 chr3A 95.850 771 25 3 3872 4638 635151449 635152216 0.000000e+00 1240.0
4 TraesCS3D01G378700 chr3A 94.901 353 15 2 4647 4997 635152307 635152658 2.840000e-152 549.0
5 TraesCS3D01G378700 chr3A 81.081 592 44 23 4656 5226 635152407 635152951 1.400000e-110 411.0
6 TraesCS3D01G378700 chr3B 92.051 2214 95 38 1 2163 654647167 654649350 0.000000e+00 3038.0
7 TraesCS3D01G378700 chr3B 91.502 1012 65 13 2708 3709 654649991 654650991 0.000000e+00 1373.0
8 TraesCS3D01G378700 chr3B 97.897 523 10 1 4122 4644 654651501 654652022 0.000000e+00 904.0
9 TraesCS3D01G378700 chr3B 93.041 388 20 4 3707 4089 654651114 654651499 1.310000e-155 560.0
10 TraesCS3D01G378700 chr3B 93.803 355 19 2 4645 4997 654652086 654652439 1.030000e-146 531.0
11 TraesCS3D01G378700 chr3B 87.170 265 20 9 2362 2625 654649460 654649711 6.830000e-74 289.0
12 TraesCS3D01G378700 chr3B 79.360 344 39 16 4656 4989 654652289 654652610 4.230000e-51 213.0
13 TraesCS3D01G378700 chr3B 89.189 74 7 1 5023 5095 654652619 654652692 2.070000e-14 91.6
14 TraesCS3D01G378700 chr4D 92.557 309 22 1 1266 1574 374605005 374604698 4.950000e-120 442.0
15 TraesCS3D01G378700 chr2A 89.320 309 26 1 1266 1574 384992 384691 1.100000e-101 381.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G378700 chr3D 495915289 495920676 5387 False 9950.00 9950 100.000000 1 5388 1 chr3D.!!$F1 5387
1 TraesCS3D01G378700 chr3A 635147494 635152951 5457 False 1380.40 3049 89.913000 1 5226 5 chr3A.!!$F1 5225
2 TraesCS3D01G378700 chr3B 654647167 654652692 5525 False 874.95 3038 90.501625 1 5095 8 chr3B.!!$F1 5094

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
739 794 0.106217 CTCCTCCTCCTCCTCCACTC 60.106 65.0 0.00 0.0 0.00 3.51 F
1929 2011 0.253020 GGAGTTCCTACCCCAGGGAA 60.253 60.0 7.25 0.0 45.58 3.97 F
2390 2481 0.108186 TGTGGCAAGATGCGAGGTAG 60.108 55.0 0.00 0.0 46.21 3.18 F
2604 2696 0.322648 TGGAGCTGTCTGTCATGGTG 59.677 55.0 0.00 0.0 0.00 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2169 2260 0.168128 GCCATACGGACAAACAGCAC 59.832 55.0 0.00 0.0 0.00 4.40 R
3242 3545 0.745845 ATGGACTGCGACATTCCTGC 60.746 55.0 14.14 0.0 34.79 4.85 R
3790 4219 2.220653 ACTGCAAGCCACATAACCAT 57.779 45.0 0.00 0.0 37.60 3.55 R
4402 4991 3.019564 GGACAATCCCCAAGAAGATGTG 58.980 50.0 0.00 0.0 0.00 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 47 5.529430 AGGAAGATCGAGTGTATCTGTACTG 59.471 44.000 0.00 0.00 33.95 2.74
47 52 8.277490 AGATCGAGTGTATCTGTACTGTTTTA 57.723 34.615 0.00 0.00 32.44 1.52
76 82 3.190079 GCGAAATGAGAGTGCATCTGTA 58.810 45.455 0.00 0.00 38.84 2.74
102 108 1.425428 CAGATCAAACGCCTTCGCC 59.575 57.895 0.00 0.00 39.84 5.54
111 117 1.153449 CGCCTTCGCCCTGAACATA 60.153 57.895 0.00 0.00 31.87 2.29
140 146 2.165167 CACAAGCAGGTTCATCCACAT 58.835 47.619 0.00 0.00 39.02 3.21
171 177 3.044986 CTCGAACCACATGCACAAAAAG 58.955 45.455 0.00 0.00 0.00 2.27
178 184 4.136051 CCACATGCACAAAAAGGGAAAAT 58.864 39.130 0.00 0.00 0.00 1.82
243 249 0.168128 GATCGGACGCCCAAGTTTTG 59.832 55.000 0.00 0.00 0.00 2.44
342 351 8.729805 ATCTCATCTCTCCTCAATAAACAAAC 57.270 34.615 0.00 0.00 0.00 2.93
359 368 6.885735 AACAAACAAAAAGAACAATCTCCG 57.114 33.333 0.00 0.00 33.77 4.63
364 373 8.603181 CAAACAAAAAGAACAATCTCCGAAATT 58.397 29.630 0.00 0.00 33.77 1.82
367 376 9.810545 ACAAAAAGAACAATCTCCGAAATTAAA 57.189 25.926 0.00 0.00 33.77 1.52
410 427 2.203437 AACGGGACCCCTTTGCAC 60.203 61.111 4.46 0.00 0.00 4.57
411 428 2.763645 AACGGGACCCCTTTGCACT 61.764 57.895 4.46 0.00 0.00 4.40
427 444 2.658548 ACTGATGACGCCAGTGAGA 58.341 52.632 0.00 0.00 42.68 3.27
428 445 0.969149 ACTGATGACGCCAGTGAGAA 59.031 50.000 0.00 0.00 42.68 2.87
429 446 1.337260 ACTGATGACGCCAGTGAGAAC 60.337 52.381 0.00 0.00 42.68 3.01
481 509 1.795768 GATCGGAGCACACAAAGTCA 58.204 50.000 0.00 0.00 0.00 3.41
627 676 2.906897 CATTCCATTCCCCGGCCG 60.907 66.667 21.04 21.04 0.00 6.13
701 756 4.083003 TCGATACAACCAAGCCAATCAAAC 60.083 41.667 0.00 0.00 0.00 2.93
739 794 0.106217 CTCCTCCTCCTCCTCCACTC 60.106 65.000 0.00 0.00 0.00 3.51
964 1025 2.044555 GGCTAGGGTTGCGGTTTCC 61.045 63.158 0.00 0.00 0.00 3.13
1281 1363 1.679305 GACCTCCTCCTGCTCGTCA 60.679 63.158 0.00 0.00 0.00 4.35
1680 1762 3.570212 ACCTCCGCAAACCTGGCT 61.570 61.111 0.00 0.00 0.00 4.75
1809 1891 2.210116 GGCGCCTCGATATTCTTTGAA 58.790 47.619 22.15 0.00 0.00 2.69
1929 2011 0.253020 GGAGTTCCTACCCCAGGGAA 60.253 60.000 7.25 0.00 45.58 3.97
1962 2044 1.549620 CGGATGAGGCTGATAGCTGAT 59.450 52.381 0.00 0.00 41.99 2.90
2039 2121 5.009010 CAGCAAAGGTACATTGACTTCTGTT 59.991 40.000 13.13 0.00 39.65 3.16
2041 2123 6.204882 AGCAAAGGTACATTGACTTCTGTTAC 59.795 38.462 13.13 0.00 39.65 2.50
2046 2128 3.472652 ACATTGACTTCTGTTACGGCAA 58.527 40.909 0.00 0.00 0.00 4.52
2047 2129 4.072131 ACATTGACTTCTGTTACGGCAAT 58.928 39.130 0.00 0.00 0.00 3.56
2056 2138 7.259161 ACTTCTGTTACGGCAATTTTGTTTAA 58.741 30.769 0.00 0.00 0.00 1.52
2069 2151 8.921670 GCAATTTTGTTTAATTATCTCACGGTT 58.078 29.630 0.00 0.00 0.00 4.44
2078 2160 9.491675 TTTAATTATCTCACGGTTACAGTTTGA 57.508 29.630 0.00 0.00 0.00 2.69
2095 2177 6.864685 ACAGTTTGATTGCATATTGTGTTCTG 59.135 34.615 0.00 0.00 28.01 3.02
2100 2182 7.160547 TGATTGCATATTGTGTTCTGAATGT 57.839 32.000 0.00 0.00 0.00 2.71
2101 2183 7.030768 TGATTGCATATTGTGTTCTGAATGTG 58.969 34.615 0.00 0.00 0.00 3.21
2102 2184 5.963176 TGCATATTGTGTTCTGAATGTGT 57.037 34.783 0.00 0.00 0.00 3.72
2104 2186 7.075674 TGCATATTGTGTTCTGAATGTGTAG 57.924 36.000 0.00 0.00 0.00 2.74
2106 2188 7.821846 TGCATATTGTGTTCTGAATGTGTAGTA 59.178 33.333 0.00 0.00 0.00 1.82
2110 2192 6.904463 TGTGTTCTGAATGTGTAGTAGGTA 57.096 37.500 0.00 0.00 0.00 3.08
2111 2193 6.684686 TGTGTTCTGAATGTGTAGTAGGTAC 58.315 40.000 0.00 0.00 0.00 3.34
2123 2205 6.827251 TGTGTAGTAGGTACCTCTCACAATAG 59.173 42.308 20.32 0.00 32.84 1.73
2149 2231 4.373156 AGCTGGGAAAACTAGTTGTGAT 57.627 40.909 9.34 0.00 0.00 3.06
2150 2232 4.729868 AGCTGGGAAAACTAGTTGTGATT 58.270 39.130 9.34 0.00 0.00 2.57
2155 2237 4.518970 GGGAAAACTAGTTGTGATTCTGCA 59.481 41.667 9.34 0.00 0.00 4.41
2175 2266 3.861886 GCAATTGCATTACCTTGTGCTGT 60.862 43.478 25.36 0.00 41.78 4.40
2176 2267 4.309099 CAATTGCATTACCTTGTGCTGTT 58.691 39.130 0.00 0.00 41.78 3.16
2199 2290 1.946768 TCCGTATGGCAAAGCTATTGC 59.053 47.619 19.20 19.20 44.22 3.56
2225 2316 8.579850 TTATCTTTGTGCTTTGATAATGTCCT 57.420 30.769 0.00 0.00 0.00 3.85
2258 2349 3.840124 ATCCCCTCGTTTCTGTTATCC 57.160 47.619 0.00 0.00 0.00 2.59
2273 2364 8.712285 TTCTGTTATCCTTTATTTGTAGTCCG 57.288 34.615 0.00 0.00 0.00 4.79
2274 2365 7.844009 TCTGTTATCCTTTATTTGTAGTCCGT 58.156 34.615 0.00 0.00 0.00 4.69
2276 2367 8.851541 TGTTATCCTTTATTTGTAGTCCGTTT 57.148 30.769 0.00 0.00 0.00 3.60
2282 2373 9.941325 TCCTTTATTTGTAGTCCGTTTAACATA 57.059 29.630 0.00 0.00 0.00 2.29
2313 2404 9.438291 GTGATTACATTGATTAGATTTTGACGG 57.562 33.333 0.00 0.00 0.00 4.79
2314 2405 8.128582 TGATTACATTGATTAGATTTTGACGGC 58.871 33.333 0.00 0.00 0.00 5.68
2315 2406 5.895636 ACATTGATTAGATTTTGACGGCA 57.104 34.783 0.00 0.00 0.00 5.69
2316 2407 6.266168 ACATTGATTAGATTTTGACGGCAA 57.734 33.333 0.00 0.00 0.00 4.52
2317 2408 6.866480 ACATTGATTAGATTTTGACGGCAAT 58.134 32.000 3.50 0.00 33.25 3.56
2318 2409 6.974622 ACATTGATTAGATTTTGACGGCAATC 59.025 34.615 3.50 0.00 33.25 2.67
2319 2410 5.499139 TGATTAGATTTTGACGGCAATCC 57.501 39.130 3.50 0.00 33.25 3.01
2320 2411 5.192927 TGATTAGATTTTGACGGCAATCCT 58.807 37.500 3.50 4.98 33.25 3.24
2321 2412 4.963276 TTAGATTTTGACGGCAATCCTG 57.037 40.909 3.50 0.00 33.25 3.86
2322 2413 3.071874 AGATTTTGACGGCAATCCTGA 57.928 42.857 3.50 0.00 33.25 3.86
2323 2414 3.420893 AGATTTTGACGGCAATCCTGAA 58.579 40.909 3.50 0.00 33.25 3.02
2324 2415 3.826157 AGATTTTGACGGCAATCCTGAAA 59.174 39.130 3.50 0.00 33.25 2.69
2325 2416 3.363341 TTTTGACGGCAATCCTGAAAC 57.637 42.857 3.50 0.00 33.25 2.78
2326 2417 2.270352 TTGACGGCAATCCTGAAACT 57.730 45.000 0.00 0.00 0.00 2.66
2327 2418 3.410631 TTGACGGCAATCCTGAAACTA 57.589 42.857 0.00 0.00 0.00 2.24
2328 2419 3.627395 TGACGGCAATCCTGAAACTAT 57.373 42.857 0.00 0.00 0.00 2.12
2329 2420 3.950397 TGACGGCAATCCTGAAACTATT 58.050 40.909 0.00 0.00 0.00 1.73
2330 2421 4.331968 TGACGGCAATCCTGAAACTATTT 58.668 39.130 0.00 0.00 0.00 1.40
2331 2422 5.492895 TGACGGCAATCCTGAAACTATTTA 58.507 37.500 0.00 0.00 0.00 1.40
2332 2423 5.584649 TGACGGCAATCCTGAAACTATTTAG 59.415 40.000 0.00 0.00 0.00 1.85
2333 2424 4.335594 ACGGCAATCCTGAAACTATTTAGC 59.664 41.667 0.00 0.00 0.00 3.09
2334 2425 4.576463 CGGCAATCCTGAAACTATTTAGCT 59.424 41.667 0.00 0.00 0.00 3.32
2335 2426 5.758296 CGGCAATCCTGAAACTATTTAGCTA 59.242 40.000 0.00 0.00 0.00 3.32
2336 2427 6.428159 CGGCAATCCTGAAACTATTTAGCTAT 59.572 38.462 0.00 0.00 0.00 2.97
2337 2428 7.571983 CGGCAATCCTGAAACTATTTAGCTATG 60.572 40.741 0.00 0.00 0.00 2.23
2338 2429 7.308830 GGCAATCCTGAAACTATTTAGCTATGG 60.309 40.741 0.00 0.00 0.00 2.74
2339 2430 7.308830 GCAATCCTGAAACTATTTAGCTATGGG 60.309 40.741 0.00 0.00 0.00 4.00
2340 2431 5.621193 TCCTGAAACTATTTAGCTATGGGC 58.379 41.667 0.00 0.00 42.19 5.36
2355 2446 5.799213 GCTATGGGCTTATCATTACTGAGT 58.201 41.667 0.00 0.00 38.06 3.41
2356 2447 6.234177 GCTATGGGCTTATCATTACTGAGTT 58.766 40.000 0.00 0.00 38.06 3.01
2357 2448 6.712547 GCTATGGGCTTATCATTACTGAGTTT 59.287 38.462 0.00 0.00 38.06 2.66
2358 2449 6.949352 ATGGGCTTATCATTACTGAGTTTG 57.051 37.500 0.00 0.00 34.12 2.93
2359 2450 6.061022 TGGGCTTATCATTACTGAGTTTGA 57.939 37.500 0.00 0.00 34.12 2.69
2360 2451 6.480763 TGGGCTTATCATTACTGAGTTTGAA 58.519 36.000 0.00 0.00 34.12 2.69
2390 2481 0.108186 TGTGGCAAGATGCGAGGTAG 60.108 55.000 0.00 0.00 46.21 3.18
2395 2486 2.802816 GGCAAGATGCGAGGTAGTATTG 59.197 50.000 0.00 0.00 46.21 1.90
2411 2503 8.802267 AGGTAGTATTGTTTGTTATGTTTGCAT 58.198 29.630 0.00 0.00 39.03 3.96
2412 2504 8.859156 GGTAGTATTGTTTGTTATGTTTGCATG 58.141 33.333 0.00 0.00 36.58 4.06
2413 2505 9.405587 GTAGTATTGTTTGTTATGTTTGCATGT 57.594 29.630 0.00 0.00 36.58 3.21
2414 2506 8.519492 AGTATTGTTTGTTATGTTTGCATGTC 57.481 30.769 0.00 0.00 36.58 3.06
2415 2507 6.783892 ATTGTTTGTTATGTTTGCATGTCC 57.216 33.333 0.00 0.00 36.58 4.02
2416 2508 5.268118 TGTTTGTTATGTTTGCATGTCCA 57.732 34.783 0.00 0.00 36.58 4.02
2417 2509 5.046529 TGTTTGTTATGTTTGCATGTCCAC 58.953 37.500 0.00 0.00 36.58 4.02
2418 2510 5.163468 TGTTTGTTATGTTTGCATGTCCACT 60.163 36.000 0.00 0.00 36.58 4.00
2419 2511 5.528043 TTGTTATGTTTGCATGTCCACTT 57.472 34.783 0.00 0.00 36.58 3.16
2427 2519 1.133823 TGCATGTCCACTTGTCCAGTT 60.134 47.619 0.00 0.00 30.92 3.16
2461 2553 6.521151 AACATTTGAATTTGTTTGGCCAAA 57.479 29.167 27.13 27.13 38.58 3.28
2468 2560 5.238214 TGAATTTGTTTGGCCAAAGCATTAC 59.762 36.000 31.09 19.04 42.56 1.89
2484 2576 6.461110 AGCATTACCTCAAATTGAAGGATG 57.539 37.500 15.11 10.45 0.00 3.51
2512 2604 3.826157 TGTAGGGCCTTTGTTCTTGATTG 59.174 43.478 13.45 0.00 0.00 2.67
2577 2669 7.786178 TTGAAATGACGAGGATGTAATTAGG 57.214 36.000 0.00 0.00 0.00 2.69
2578 2670 7.119709 TGAAATGACGAGGATGTAATTAGGA 57.880 36.000 0.00 0.00 0.00 2.94
2579 2671 7.210174 TGAAATGACGAGGATGTAATTAGGAG 58.790 38.462 0.00 0.00 0.00 3.69
2590 2682 2.443958 AATTAGGAGGCCTTTGGAGC 57.556 50.000 6.77 0.00 34.61 4.70
2592 2684 0.620556 TTAGGAGGCCTTTGGAGCTG 59.379 55.000 6.77 0.00 34.61 4.24
2604 2696 0.322648 TGGAGCTGTCTGTCATGGTG 59.677 55.000 0.00 0.00 0.00 4.17
2613 2705 3.276857 GTCTGTCATGGTGATTCATGCT 58.723 45.455 0.00 0.00 42.96 3.79
2627 2884 7.546667 GGTGATTCATGCTTGACATATTGTTTT 59.453 33.333 1.02 0.00 36.64 2.43
2633 2890 8.305317 TCATGCTTGACATATTGTTTTTCATGA 58.695 29.630 0.00 0.00 36.64 3.07
2637 2894 8.589629 GCTTGACATATTGTTTTTCATGACATC 58.410 33.333 0.00 0.00 0.00 3.06
2638 2895 9.628746 CTTGACATATTGTTTTTCATGACATCA 57.371 29.630 0.00 0.00 0.00 3.07
2662 2919 8.978472 TCATTGTAACTTAGTCTAAGGCTGTAT 58.022 33.333 21.12 8.23 40.08 2.29
2664 2921 7.949690 TGTAACTTAGTCTAAGGCTGTATCA 57.050 36.000 21.12 9.14 40.08 2.15
2666 2923 7.614583 TGTAACTTAGTCTAAGGCTGTATCAGT 59.385 37.037 21.12 0.00 40.08 3.41
2667 2924 6.458232 ACTTAGTCTAAGGCTGTATCAGTG 57.542 41.667 21.12 0.00 40.08 3.66
2681 2958 4.826733 TGTATCAGTGCAAAATCACCTGTT 59.173 37.500 0.00 0.00 37.68 3.16
2684 2961 2.361757 CAGTGCAAAATCACCTGTTCCA 59.638 45.455 0.00 0.00 37.68 3.53
2689 2966 6.319658 AGTGCAAAATCACCTGTTCCATATAG 59.680 38.462 0.00 0.00 37.68 1.31
2694 2971 5.636903 ATCACCTGTTCCATATAGCACTT 57.363 39.130 0.00 0.00 0.00 3.16
2695 2972 5.023533 TCACCTGTTCCATATAGCACTTC 57.976 43.478 0.00 0.00 0.00 3.01
2728 3018 6.421801 ACAAAAGTGACAAGCATATTTTCTGC 59.578 34.615 0.00 0.00 39.97 4.26
2743 3033 2.034104 TCTGCTGTGCCATCTCATTC 57.966 50.000 0.00 0.00 0.00 2.67
2771 3061 5.013568 TGCATCATTTCTTAATTGGCTGG 57.986 39.130 0.00 0.00 0.00 4.85
2774 3064 6.324512 TGCATCATTTCTTAATTGGCTGGTAT 59.675 34.615 0.00 0.00 0.00 2.73
2801 3091 9.155975 CTGATGGTTATACAAATACTATGAGGC 57.844 37.037 0.00 0.00 0.00 4.70
2815 3106 9.512588 AATACTATGAGGCAATTCTTCTTATGG 57.487 33.333 0.00 0.00 0.00 2.74
2864 3155 9.442047 CATTAGAATAGACCATAGAAACCATCC 57.558 37.037 0.00 0.00 0.00 3.51
2905 3197 9.476202 AGAACACCATTAAAACTTATTTTCAGC 57.524 29.630 0.00 0.00 38.91 4.26
2915 3207 8.648557 AAAACTTATTTTCAGCCTGAAAGAAC 57.351 30.769 18.50 0.00 45.77 3.01
2918 3210 6.772716 ACTTATTTTCAGCCTGAAAGAACTCA 59.227 34.615 18.50 4.88 45.77 3.41
2923 3215 2.810852 CAGCCTGAAAGAACTCAGTTCC 59.189 50.000 14.27 0.00 42.85 3.62
2924 3216 2.708325 AGCCTGAAAGAACTCAGTTCCT 59.292 45.455 14.27 0.00 42.85 3.36
2925 3217 3.137360 AGCCTGAAAGAACTCAGTTCCTT 59.863 43.478 14.27 7.57 42.85 3.36
2964 3256 8.777413 TCATATTGATTAGCATGCTACTTGTTC 58.223 33.333 26.87 17.26 0.00 3.18
2981 3273 5.587043 ACTTGTTCGTTTTCTTGGTGATGTA 59.413 36.000 0.00 0.00 0.00 2.29
2999 3291 3.861840 TGTAGTCATGCTGAACTAAGCC 58.138 45.455 0.00 0.00 42.83 4.35
3001 3293 3.641434 AGTCATGCTGAACTAAGCCAT 57.359 42.857 0.00 0.00 42.83 4.40
3004 3296 5.121811 AGTCATGCTGAACTAAGCCATTAG 58.878 41.667 0.00 0.00 42.83 1.73
3023 3315 7.428826 CCATTAGAACATTTATTCTTGCTCCC 58.571 38.462 0.00 0.00 39.65 4.30
3033 3325 1.165907 TCTTGCTCCCGTGCTGTTTG 61.166 55.000 0.00 0.00 0.00 2.93
3061 3360 9.448438 TGCACTTTTATGTTATCTATGAACACT 57.552 29.630 0.00 0.00 39.51 3.55
3090 3389 6.091437 CCTTCTGAAAGATTGTCTGAATTGC 58.909 40.000 0.00 0.00 46.36 3.56
3138 3437 6.970484 AGTTCCACTATTTTGATGTTCACAC 58.030 36.000 0.00 0.00 0.00 3.82
3142 3441 6.150976 TCCACTATTTTGATGTTCACACCATC 59.849 38.462 0.00 0.00 39.32 3.51
3143 3442 6.072008 CCACTATTTTGATGTTCACACCATCA 60.072 38.462 0.00 0.00 45.14 3.07
3167 3466 3.633573 AAAAAGTTCCCGTGTTGCG 57.366 47.368 0.00 0.00 40.95 4.85
3199 3502 3.071023 ACCTTGTCACACTTTGCTAGCTA 59.929 43.478 17.23 5.31 0.00 3.32
3223 3526 2.609427 TTACTGCCTGCTGATAGCTG 57.391 50.000 0.00 1.73 42.97 4.24
3228 3531 1.280133 TGCCTGCTGATAGCTGTTTCT 59.720 47.619 0.00 0.00 42.97 2.52
3229 3532 2.290514 TGCCTGCTGATAGCTGTTTCTT 60.291 45.455 0.00 0.00 42.97 2.52
3230 3533 3.055167 TGCCTGCTGATAGCTGTTTCTTA 60.055 43.478 0.00 0.00 42.97 2.10
3242 3545 9.374960 GATAGCTGTTTCTTATTATTGCTTTCG 57.625 33.333 0.00 0.00 0.00 3.46
3284 3587 3.312146 TCGACTACTGTGACGTTGTTACA 59.688 43.478 0.00 0.00 31.50 2.41
3335 3638 9.286170 GGTCCTAGAGGTGGAATAATATTTTTC 57.714 37.037 9.44 9.44 35.10 2.29
3695 3998 5.277154 GCAGCGTACTTGTTTTCTGACTTTA 60.277 40.000 0.00 0.00 0.00 1.85
3773 4202 6.537301 TCGGTTTCATATTGACTAATGGACAC 59.463 38.462 0.00 0.00 0.00 3.67
3774 4203 6.315144 CGGTTTCATATTGACTAATGGACACA 59.685 38.462 0.00 0.00 0.00 3.72
3802 4231 6.806739 GTCAGAAAGTAAAATGGTTATGTGGC 59.193 38.462 0.00 0.00 0.00 5.01
3935 4520 5.309323 TGCATGTGGCTTATAAAGTTGTC 57.691 39.130 0.00 0.00 45.15 3.18
3999 4584 4.446371 AGCTGTGCCACATCTCTATAAAC 58.554 43.478 0.00 0.00 0.00 2.01
4119 4708 8.394877 TGTTTGTGTATGTGAACAGAAAGTAAG 58.605 33.333 0.20 0.00 41.56 2.34
4120 4709 8.395633 GTTTGTGTATGTGAACAGAAAGTAAGT 58.604 33.333 0.20 0.00 41.56 2.24
4158 4747 4.999311 GCTTATCATCATGGTGCTGTATGA 59.001 41.667 0.00 0.00 37.68 2.15
4195 4784 4.624125 GCAATGACTACTAGAGGTTGCCTT 60.624 45.833 0.00 0.00 36.73 4.35
4338 4927 4.523558 GGACATTATAGAGCTCGGTAACCT 59.476 45.833 8.37 0.91 0.00 3.50
4517 5106 3.498397 CAGCAACAGTGTAGGAAACGATT 59.502 43.478 0.00 0.00 0.00 3.34
4674 5345 6.195700 TGAGCTTTTATACTAGGGTGAGACT 58.804 40.000 0.00 0.00 0.00 3.24
4776 5447 4.168101 TGGGTGTTCTATCTTCTGGAACT 58.832 43.478 0.00 0.00 43.66 3.01
4872 5545 1.556911 CTGGGTGTGCTATCTTCTGGT 59.443 52.381 0.00 0.00 0.00 4.00
4911 5584 4.992381 ACTTAAATGTCAGCTGTTCGTC 57.008 40.909 14.67 1.56 0.00 4.20
4922 5595 1.390463 GCTGTTCGTCGATGAAAGGTC 59.610 52.381 21.19 9.82 0.00 3.85
4933 5606 5.006746 GTCGATGAAAGGTCATTTAGCGATT 59.993 40.000 0.00 0.00 44.83 3.34
4945 5618 8.280497 GGTCATTTAGCGATTGTTTTATATCGT 58.720 33.333 0.00 0.00 44.05 3.73
4946 5619 9.092322 GTCATTTAGCGATTGTTTTATATCGTG 57.908 33.333 0.00 0.00 44.05 4.35
4961 5634 0.108662 TCGTGTGTGCTATCTGCTGG 60.109 55.000 0.00 0.00 43.37 4.85
4975 5648 2.158623 TCTGCTGGAACCATTTGAGTGT 60.159 45.455 0.00 0.00 0.00 3.55
4997 5670 7.284489 AGTGTTTTTAACTTAACCATCAGCTGA 59.716 33.333 20.79 20.79 0.00 4.26
4998 5671 7.591426 GTGTTTTTAACTTAACCATCAGCTGAG 59.409 37.037 22.96 11.98 0.00 3.35
5021 5855 5.235831 AGTGTTTTAACTTAACCGTCAGCTC 59.764 40.000 0.00 0.00 0.00 4.09
5024 5858 6.018507 TGTTTTAACTTAACCGTCAGCTCTTC 60.019 38.462 0.00 0.00 0.00 2.87
5043 5877 6.349363 GCTCTTCGTGGATGAAAGGTTATTTT 60.349 38.462 0.00 0.00 0.00 1.82
5079 5914 8.789881 TTACTTTGTTGTTCAATGATTTACCG 57.210 30.769 0.00 0.00 35.84 4.02
5081 5916 7.138736 ACTTTGTTGTTCAATGATTTACCGAG 58.861 34.615 0.00 0.00 35.84 4.63
5114 5949 8.667987 TTATGCTAACATTTTGCTCGTAAAAG 57.332 30.769 0.00 0.00 37.74 2.27
5115 5950 4.915085 TGCTAACATTTTGCTCGTAAAAGC 59.085 37.500 0.00 0.00 42.82 3.51
5116 5951 5.154222 GCTAACATTTTGCTCGTAAAAGCT 58.846 37.500 0.00 0.00 42.94 3.74
5117 5952 5.629435 GCTAACATTTTGCTCGTAAAAGCTT 59.371 36.000 0.00 0.00 42.94 3.74
5118 5953 6.799925 GCTAACATTTTGCTCGTAAAAGCTTA 59.200 34.615 0.00 0.00 42.94 3.09
5119 5954 7.484959 GCTAACATTTTGCTCGTAAAAGCTTAT 59.515 33.333 0.00 0.00 42.94 1.73
5120 5955 9.982291 CTAACATTTTGCTCGTAAAAGCTTATA 57.018 29.630 0.00 0.00 42.94 0.98
5122 5957 9.855021 AACATTTTGCTCGTAAAAGCTTATAAT 57.145 25.926 0.00 0.00 42.94 1.28
5123 5958 9.855021 ACATTTTGCTCGTAAAAGCTTATAATT 57.145 25.926 0.00 0.00 42.94 1.40
5126 5961 9.997482 TTTTGCTCGTAAAAGCTTATAATTAGG 57.003 29.630 0.00 0.63 42.94 2.69
5127 5962 8.951787 TTGCTCGTAAAAGCTTATAATTAGGA 57.048 30.769 0.00 5.21 42.94 2.94
5222 6057 2.336554 AGCTCGTTTAACTACGCGAA 57.663 45.000 15.93 0.00 41.16 4.70
5226 6061 3.479389 GCTCGTTTAACTACGCGAAGAAC 60.479 47.826 15.93 7.71 41.16 3.01
5227 6062 2.979813 TCGTTTAACTACGCGAAGAACC 59.020 45.455 15.93 0.00 41.16 3.62
5228 6063 2.982470 CGTTTAACTACGCGAAGAACCT 59.018 45.455 15.93 0.00 34.45 3.50
5229 6064 3.426525 CGTTTAACTACGCGAAGAACCTT 59.573 43.478 15.93 0.00 34.45 3.50
5230 6065 4.662394 CGTTTAACTACGCGAAGAACCTTG 60.662 45.833 15.93 0.00 34.45 3.61
5231 6066 1.145803 AACTACGCGAAGAACCTTGC 58.854 50.000 15.93 0.00 0.00 4.01
5232 6067 0.032952 ACTACGCGAAGAACCTTGCA 59.967 50.000 15.93 0.00 0.00 4.08
5233 6068 1.337823 ACTACGCGAAGAACCTTGCAT 60.338 47.619 15.93 0.00 0.00 3.96
5234 6069 1.061131 CTACGCGAAGAACCTTGCATG 59.939 52.381 15.93 0.00 0.00 4.06
5235 6070 1.512734 CGCGAAGAACCTTGCATGC 60.513 57.895 11.82 11.82 0.00 4.06
5236 6071 1.580942 GCGAAGAACCTTGCATGCA 59.419 52.632 18.46 18.46 0.00 3.96
5237 6072 0.039256 GCGAAGAACCTTGCATGCAA 60.039 50.000 30.12 30.12 0.00 4.08
5244 6079 2.890371 CTTGCATGCAAGGAGGGC 59.110 61.111 40.70 5.74 46.88 5.19
5245 6080 2.681064 TTGCATGCAAGGAGGGCC 60.681 61.111 28.80 0.00 0.00 5.80
5246 6081 3.526600 TTGCATGCAAGGAGGGCCA 62.527 57.895 28.80 3.67 36.29 5.36
5247 6082 3.455469 GCATGCAAGGAGGGCCAC 61.455 66.667 14.21 0.00 36.29 5.01
5248 6083 2.757099 CATGCAAGGAGGGCCACC 60.757 66.667 12.67 12.67 36.29 4.61
5249 6084 4.431131 ATGCAAGGAGGGCCACCG 62.431 66.667 14.68 2.34 43.47 4.94
5252 6087 4.101448 CAAGGAGGGCCACCGGAG 62.101 72.222 9.46 0.00 43.47 4.63
5283 6118 4.598894 CGGAGGCGGCTGATCCTG 62.599 72.222 19.63 2.39 31.71 3.86
5284 6119 3.157252 GGAGGCGGCTGATCCTGA 61.157 66.667 19.63 0.00 31.71 3.86
5285 6120 2.420890 GAGGCGGCTGATCCTGAG 59.579 66.667 19.63 0.00 31.71 3.35
5286 6121 3.160047 AGGCGGCTGATCCTGAGG 61.160 66.667 12.25 0.00 0.00 3.86
5287 6122 3.474570 GGCGGCTGATCCTGAGGT 61.475 66.667 0.00 0.00 0.00 3.85
5288 6123 2.202987 GCGGCTGATCCTGAGGTG 60.203 66.667 0.00 0.00 0.00 4.00
5289 6124 2.202987 CGGCTGATCCTGAGGTGC 60.203 66.667 0.00 0.00 0.00 5.01
5290 6125 2.191641 GGCTGATCCTGAGGTGCC 59.808 66.667 0.00 5.15 0.00 5.01
5291 6126 2.191641 GCTGATCCTGAGGTGCCC 59.808 66.667 0.00 0.00 0.00 5.36
5292 6127 2.373707 GCTGATCCTGAGGTGCCCT 61.374 63.158 0.00 0.00 36.03 5.19
5293 6128 1.919600 GCTGATCCTGAGGTGCCCTT 61.920 60.000 0.00 0.00 31.76 3.95
5294 6129 0.179936 CTGATCCTGAGGTGCCCTTC 59.820 60.000 0.00 0.00 31.76 3.46
5295 6130 1.144936 GATCCTGAGGTGCCCTTCG 59.855 63.158 0.00 0.00 31.76 3.79
5296 6131 1.613630 ATCCTGAGGTGCCCTTCGT 60.614 57.895 0.00 0.00 31.76 3.85
5297 6132 1.201429 ATCCTGAGGTGCCCTTCGTT 61.201 55.000 0.00 0.00 31.76 3.85
5298 6133 1.376037 CCTGAGGTGCCCTTCGTTC 60.376 63.158 0.00 0.00 31.76 3.95
5299 6134 1.376037 CTGAGGTGCCCTTCGTTCC 60.376 63.158 0.00 0.00 31.76 3.62
5300 6135 2.046217 GAGGTGCCCTTCGTTCCC 60.046 66.667 0.00 0.00 31.76 3.97
5301 6136 3.952628 GAGGTGCCCTTCGTTCCCG 62.953 68.421 0.00 0.00 31.76 5.14
5303 6138 4.699522 GTGCCCTTCGTTCCCGCT 62.700 66.667 0.00 0.00 0.00 5.52
5304 6139 4.697756 TGCCCTTCGTTCCCGCTG 62.698 66.667 0.00 0.00 0.00 5.18
5308 6143 4.735132 CTTCGTTCCCGCTGCCGA 62.735 66.667 0.00 0.00 36.29 5.54
5309 6144 4.735132 TTCGTTCCCGCTGCCGAG 62.735 66.667 0.00 0.00 36.29 4.63
5317 6152 4.147449 CGCTGCCGAGGACATGGA 62.147 66.667 0.00 0.00 36.29 3.41
5318 6153 2.512515 GCTGCCGAGGACATGGAC 60.513 66.667 0.00 0.00 0.00 4.02
5319 6154 3.023949 GCTGCCGAGGACATGGACT 62.024 63.158 0.00 0.00 0.00 3.85
5320 6155 1.599047 CTGCCGAGGACATGGACTT 59.401 57.895 0.00 0.00 0.00 3.01
5321 6156 0.460987 CTGCCGAGGACATGGACTTC 60.461 60.000 0.00 0.00 0.00 3.01
5322 6157 1.519455 GCCGAGGACATGGACTTCG 60.519 63.158 15.61 15.61 36.79 3.79
5323 6158 1.519455 CCGAGGACATGGACTTCGC 60.519 63.158 16.60 0.00 35.97 4.70
5324 6159 1.519455 CGAGGACATGGACTTCGCC 60.519 63.158 11.90 0.00 31.17 5.54
5325 6160 1.519455 GAGGACATGGACTTCGCCG 60.519 63.158 0.00 0.00 0.00 6.46
5326 6161 2.227089 GAGGACATGGACTTCGCCGT 62.227 60.000 0.00 0.00 0.00 5.68
5328 6163 1.080093 GACATGGACTTCGCCGTGA 60.080 57.895 9.42 0.00 45.81 4.35
5329 6164 1.352156 GACATGGACTTCGCCGTGAC 61.352 60.000 9.42 0.00 45.81 3.67
5330 6165 1.374125 CATGGACTTCGCCGTGACA 60.374 57.895 0.00 0.00 45.81 3.58
5331 6166 1.079819 ATGGACTTCGCCGTGACAG 60.080 57.895 0.00 0.00 0.00 3.51
5332 6167 3.112709 GGACTTCGCCGTGACAGC 61.113 66.667 0.00 0.00 0.00 4.40
5333 6168 3.112709 GACTTCGCCGTGACAGCC 61.113 66.667 0.00 0.00 0.00 4.85
5334 6169 3.858868 GACTTCGCCGTGACAGCCA 62.859 63.158 0.00 0.00 0.00 4.75
5335 6170 3.414700 CTTCGCCGTGACAGCCAC 61.415 66.667 0.00 0.00 42.30 5.01
5336 6171 4.980805 TTCGCCGTGACAGCCACC 62.981 66.667 0.00 0.00 42.76 4.61
5339 6174 2.672996 GCCGTGACAGCCACCAAT 60.673 61.111 0.00 0.00 42.76 3.16
5340 6175 2.690778 GCCGTGACAGCCACCAATC 61.691 63.158 0.00 0.00 42.76 2.67
5341 6176 1.003355 CCGTGACAGCCACCAATCT 60.003 57.895 0.00 0.00 42.76 2.40
5342 6177 0.249120 CCGTGACAGCCACCAATCTA 59.751 55.000 0.00 0.00 42.76 1.98
5343 6178 1.645034 CGTGACAGCCACCAATCTAG 58.355 55.000 0.00 0.00 42.76 2.43
5344 6179 1.204704 CGTGACAGCCACCAATCTAGA 59.795 52.381 0.00 0.00 42.76 2.43
5345 6180 2.736719 CGTGACAGCCACCAATCTAGAG 60.737 54.545 0.00 0.00 42.76 2.43
5346 6181 1.833630 TGACAGCCACCAATCTAGAGG 59.166 52.381 0.00 0.00 0.00 3.69
5347 6182 1.834263 GACAGCCACCAATCTAGAGGT 59.166 52.381 0.00 0.00 39.10 3.85
5348 6183 2.237392 GACAGCCACCAATCTAGAGGTT 59.763 50.000 0.91 0.00 35.52 3.50
5349 6184 2.026822 ACAGCCACCAATCTAGAGGTTG 60.027 50.000 9.41 9.41 35.52 3.77
5350 6185 2.026822 CAGCCACCAATCTAGAGGTTGT 60.027 50.000 0.91 0.00 35.52 3.32
5351 6186 2.026822 AGCCACCAATCTAGAGGTTGTG 60.027 50.000 0.91 4.62 35.52 3.33
5352 6187 2.359900 CCACCAATCTAGAGGTTGTGC 58.640 52.381 0.91 0.00 35.52 4.57
5353 6188 2.359900 CACCAATCTAGAGGTTGTGCC 58.640 52.381 0.91 0.00 35.52 5.01
5354 6189 1.282157 ACCAATCTAGAGGTTGTGCCC 59.718 52.381 0.00 0.00 38.26 5.36
5355 6190 1.656652 CAATCTAGAGGTTGTGCCCG 58.343 55.000 0.00 0.00 38.26 6.13
5356 6191 0.107654 AATCTAGAGGTTGTGCCCGC 60.108 55.000 0.00 0.00 38.26 6.13
5357 6192 1.972660 ATCTAGAGGTTGTGCCCGCC 61.973 60.000 0.00 0.00 38.26 6.13
5358 6193 4.077184 TAGAGGTTGTGCCCGCCG 62.077 66.667 0.00 0.00 38.26 6.46
5370 6205 4.473520 CCGCCGGGATGAGCAACT 62.474 66.667 2.18 0.00 34.06 3.16
5371 6206 2.436646 CGCCGGGATGAGCAACTT 60.437 61.111 2.18 0.00 0.00 2.66
5372 6207 2.753966 CGCCGGGATGAGCAACTTG 61.754 63.158 2.18 0.00 0.00 3.16
5373 6208 1.675641 GCCGGGATGAGCAACTTGT 60.676 57.895 2.18 0.00 0.00 3.16
5374 6209 1.648467 GCCGGGATGAGCAACTTGTC 61.648 60.000 2.18 0.00 0.00 3.18
5375 6210 1.361668 CCGGGATGAGCAACTTGTCG 61.362 60.000 0.00 0.00 0.00 4.35
5376 6211 1.361668 CGGGATGAGCAACTTGTCGG 61.362 60.000 0.00 0.00 0.00 4.79
5377 6212 1.648467 GGGATGAGCAACTTGTCGGC 61.648 60.000 0.00 0.00 0.00 5.54
5378 6213 1.421485 GATGAGCAACTTGTCGGCG 59.579 57.895 0.00 0.00 0.00 6.46
5379 6214 1.970917 GATGAGCAACTTGTCGGCGG 61.971 60.000 7.21 0.00 0.00 6.13
5380 6215 2.357034 GAGCAACTTGTCGGCGGA 60.357 61.111 7.21 0.00 0.00 5.54
5381 6216 2.357517 AGCAACTTGTCGGCGGAG 60.358 61.111 7.21 5.66 0.00 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 2.663826 ACACTCGATCTTCCTTGCTC 57.336 50.000 0.00 0.00 0.00 4.26
42 47 7.998212 CACTCTCATTTCGCACAAAAATAAAAC 59.002 33.333 0.00 0.00 0.00 2.43
47 52 3.983344 GCACTCTCATTTCGCACAAAAAT 59.017 39.130 0.00 0.00 0.00 1.82
53 58 2.005451 AGATGCACTCTCATTTCGCAC 58.995 47.619 0.00 0.00 35.02 5.34
76 82 1.338200 GGCGTTTGATCTGGACAGAGT 60.338 52.381 8.14 0.00 41.33 3.24
102 108 5.762045 CTTGTGTTTTCAGGTATGTTCAGG 58.238 41.667 0.00 0.00 0.00 3.86
140 146 4.391830 GCATGTGGTTCGAGTTCTTGATTA 59.608 41.667 0.00 0.00 0.00 1.75
376 385 8.799367 GGGTCCCGTTGCTATTTTATTATTATT 58.201 33.333 0.00 0.00 0.00 1.40
377 386 7.395206 GGGGTCCCGTTGCTATTTTATTATTAT 59.605 37.037 0.48 0.00 0.00 1.28
378 387 6.716173 GGGGTCCCGTTGCTATTTTATTATTA 59.284 38.462 0.48 0.00 0.00 0.98
379 388 5.537295 GGGGTCCCGTTGCTATTTTATTATT 59.463 40.000 0.48 0.00 0.00 1.40
380 389 5.074804 GGGGTCCCGTTGCTATTTTATTAT 58.925 41.667 0.48 0.00 0.00 1.28
381 390 4.166531 AGGGGTCCCGTTGCTATTTTATTA 59.833 41.667 0.48 0.00 41.95 0.98
382 391 3.053170 AGGGGTCCCGTTGCTATTTTATT 60.053 43.478 0.48 0.00 41.95 1.40
410 427 1.354040 GTTCTCACTGGCGTCATCAG 58.646 55.000 0.00 0.00 38.16 2.90
411 428 0.388520 CGTTCTCACTGGCGTCATCA 60.389 55.000 0.00 0.00 0.00 3.07
582 631 2.746375 GGACGCACCTGGATGGGAT 61.746 63.158 16.16 5.00 41.11 3.85
627 676 1.659794 GTTGGTGATGTGGTGGTGC 59.340 57.895 0.00 0.00 0.00 5.01
634 683 1.674322 GGGACGGGTTGGTGATGTG 60.674 63.158 0.00 0.00 0.00 3.21
635 684 2.754375 GGGACGGGTTGGTGATGT 59.246 61.111 0.00 0.00 0.00 3.06
636 685 2.045340 GGGGACGGGTTGGTGATG 60.045 66.667 0.00 0.00 0.00 3.07
739 794 3.372206 GTGTTTGGAATCTGATGAGACGG 59.628 47.826 0.00 0.00 0.00 4.79
964 1025 0.392998 CTCCCCAAATCACCTCACGG 60.393 60.000 0.00 0.00 0.00 4.94
972 1033 4.095946 CCTCCAAAATTCTCCCCAAATCA 58.904 43.478 0.00 0.00 0.00 2.57
1398 1480 4.678499 TCCATGAGCGCGTGCACA 62.678 61.111 22.81 22.81 45.75 4.57
1545 1627 1.140375 CTGGTTCCCGCCGTAGTAC 59.860 63.158 0.00 0.00 0.00 2.73
1680 1762 1.203187 AGGAGAAGCCCTGTGTAGACA 60.203 52.381 0.00 0.00 37.37 3.41
1758 1840 4.785301 TCTTACCACTAGGCGTGTAGTAT 58.215 43.478 0.00 0.00 42.20 2.12
1929 2011 0.327924 TCATCCGTGCAAAGTCCCAT 59.672 50.000 0.00 0.00 0.00 4.00
1962 2044 0.467804 TGAGCACTGCACCACACTTA 59.532 50.000 3.30 0.00 0.00 2.24
2039 2121 9.562583 GTGAGATAATTAAACAAAATTGCCGTA 57.437 29.630 0.00 0.00 31.63 4.02
2041 2123 7.253618 CCGTGAGATAATTAAACAAAATTGCCG 60.254 37.037 0.00 0.00 31.63 5.69
2056 2138 7.414098 GCAATCAAACTGTAACCGTGAGATAAT 60.414 37.037 0.00 0.00 0.00 1.28
2069 2151 8.022550 CAGAACACAATATGCAATCAAACTGTA 58.977 33.333 0.00 0.00 0.00 2.74
2071 2153 7.085746 TCAGAACACAATATGCAATCAAACTG 58.914 34.615 0.00 0.00 0.00 3.16
2078 2160 6.927416 ACACATTCAGAACACAATATGCAAT 58.073 32.000 0.00 0.00 0.00 3.56
2095 2177 5.651139 TGTGAGAGGTACCTACTACACATTC 59.349 44.000 25.25 9.55 33.22 2.67
2100 2182 5.826737 GCTATTGTGAGAGGTACCTACTACA 59.173 44.000 16.29 16.39 0.00 2.74
2101 2183 6.063404 AGCTATTGTGAGAGGTACCTACTAC 58.937 44.000 16.29 13.96 0.00 2.73
2102 2184 6.263412 AGCTATTGTGAGAGGTACCTACTA 57.737 41.667 16.29 7.17 0.00 1.82
2104 2186 7.148205 GCTATAGCTATTGTGAGAGGTACCTAC 60.148 44.444 16.29 10.55 38.21 3.18
2106 2188 5.712917 GCTATAGCTATTGTGAGAGGTACCT 59.287 44.000 16.26 16.26 38.21 3.08
2123 2205 5.294552 CACAACTAGTTTTCCCAGCTATAGC 59.705 44.000 17.33 17.33 42.49 2.97
2155 2237 4.605640 AACAGCACAAGGTAATGCAATT 57.394 36.364 0.00 0.00 44.59 2.32
2168 2259 1.518325 CCATACGGACAAACAGCACA 58.482 50.000 0.00 0.00 0.00 4.57
2169 2260 0.168128 GCCATACGGACAAACAGCAC 59.832 55.000 0.00 0.00 0.00 4.40
2175 2266 1.904287 AGCTTTGCCATACGGACAAA 58.096 45.000 0.00 0.00 36.54 2.83
2176 2267 2.772077 TAGCTTTGCCATACGGACAA 57.228 45.000 0.00 0.00 0.00 3.18
2199 2290 8.680903 AGGACATTATCAAAGCACAAAGATAAG 58.319 33.333 0.00 0.00 36.67 1.73
2225 2316 8.272173 AGAAACGAGGGGATAATCTTTGAAATA 58.728 33.333 0.00 0.00 0.00 1.40
2241 2332 7.120726 ACAAATAAAGGATAACAGAAACGAGGG 59.879 37.037 0.00 0.00 0.00 4.30
2287 2378 9.438291 CCGTCAAAATCTAATCAATGTAATCAC 57.562 33.333 0.00 0.00 0.00 3.06
2290 2381 7.995289 TGCCGTCAAAATCTAATCAATGTAAT 58.005 30.769 0.00 0.00 0.00 1.89
2304 2395 3.573967 AGTTTCAGGATTGCCGTCAAAAT 59.426 39.130 0.00 0.00 39.96 1.82
2305 2396 2.955660 AGTTTCAGGATTGCCGTCAAAA 59.044 40.909 0.00 0.00 39.96 2.44
2306 2397 2.582052 AGTTTCAGGATTGCCGTCAAA 58.418 42.857 0.00 0.00 39.96 2.69
2307 2398 2.270352 AGTTTCAGGATTGCCGTCAA 57.730 45.000 0.00 0.00 39.96 3.18
2308 2399 3.627395 ATAGTTTCAGGATTGCCGTCA 57.373 42.857 0.00 0.00 39.96 4.35
2309 2400 4.965119 AAATAGTTTCAGGATTGCCGTC 57.035 40.909 0.00 0.00 39.96 4.79
2310 2401 4.335594 GCTAAATAGTTTCAGGATTGCCGT 59.664 41.667 0.00 0.00 39.96 5.68
2311 2402 4.576463 AGCTAAATAGTTTCAGGATTGCCG 59.424 41.667 0.00 0.00 39.96 5.69
2312 2403 7.308830 CCATAGCTAAATAGTTTCAGGATTGCC 60.309 40.741 0.00 0.00 0.00 4.52
2313 2404 7.308830 CCCATAGCTAAATAGTTTCAGGATTGC 60.309 40.741 0.00 0.00 0.00 3.56
2314 2405 7.308830 GCCCATAGCTAAATAGTTTCAGGATTG 60.309 40.741 0.00 0.00 38.99 2.67
2315 2406 6.717084 GCCCATAGCTAAATAGTTTCAGGATT 59.283 38.462 0.00 0.00 38.99 3.01
2316 2407 6.241645 GCCCATAGCTAAATAGTTTCAGGAT 58.758 40.000 0.00 0.00 38.99 3.24
2317 2408 5.621193 GCCCATAGCTAAATAGTTTCAGGA 58.379 41.667 0.00 0.00 38.99 3.86
2318 2409 5.948992 GCCCATAGCTAAATAGTTTCAGG 57.051 43.478 0.00 0.00 38.99 3.86
2332 2423 5.799213 ACTCAGTAATGATAAGCCCATAGC 58.201 41.667 0.00 0.00 44.25 2.97
2333 2424 7.933577 TCAAACTCAGTAATGATAAGCCCATAG 59.066 37.037 0.00 0.00 0.00 2.23
2334 2425 7.801104 TCAAACTCAGTAATGATAAGCCCATA 58.199 34.615 0.00 0.00 0.00 2.74
2335 2426 6.662755 TCAAACTCAGTAATGATAAGCCCAT 58.337 36.000 0.00 0.00 0.00 4.00
2336 2427 6.061022 TCAAACTCAGTAATGATAAGCCCA 57.939 37.500 0.00 0.00 0.00 5.36
2337 2428 6.374333 TGTTCAAACTCAGTAATGATAAGCCC 59.626 38.462 0.00 0.00 0.00 5.19
2338 2429 7.377766 TGTTCAAACTCAGTAATGATAAGCC 57.622 36.000 0.00 0.00 0.00 4.35
2374 2465 2.802816 CAATACTACCTCGCATCTTGCC 59.197 50.000 0.00 0.00 41.12 4.52
2383 2474 7.480542 GCAAACATAACAAACAATACTACCTCG 59.519 37.037 0.00 0.00 0.00 4.63
2390 2481 7.383572 TGGACATGCAAACATAACAAACAATAC 59.616 33.333 0.00 0.00 33.67 1.89
2395 2486 5.288804 AGTGGACATGCAAACATAACAAAC 58.711 37.500 0.00 0.00 33.67 2.93
2411 2503 4.346709 TGATCTAAACTGGACAAGTGGACA 59.653 41.667 0.00 0.00 39.81 4.02
2412 2504 4.894784 TGATCTAAACTGGACAAGTGGAC 58.105 43.478 0.00 0.00 39.81 4.02
2413 2505 4.563580 GCTGATCTAAACTGGACAAGTGGA 60.564 45.833 0.00 0.00 39.81 4.02
2414 2506 3.686726 GCTGATCTAAACTGGACAAGTGG 59.313 47.826 0.00 0.00 39.81 4.00
2415 2507 4.573900 AGCTGATCTAAACTGGACAAGTG 58.426 43.478 0.00 0.00 39.81 3.16
2416 2508 4.899352 AGCTGATCTAAACTGGACAAGT 57.101 40.909 0.00 0.00 42.60 3.16
2417 2509 6.166279 TGTTAGCTGATCTAAACTGGACAAG 58.834 40.000 0.00 0.00 38.86 3.16
2418 2510 6.109156 TGTTAGCTGATCTAAACTGGACAA 57.891 37.500 0.00 0.00 38.86 3.18
2419 2511 5.738619 TGTTAGCTGATCTAAACTGGACA 57.261 39.130 0.00 0.00 38.86 4.02
2461 2553 5.163478 GCATCCTTCAATTTGAGGTAATGCT 60.163 40.000 23.90 0.00 37.55 3.79
2468 2560 5.993441 ACAAAAAGCATCCTTCAATTTGAGG 59.007 36.000 1.69 1.69 33.28 3.86
2484 2576 3.069586 AGAACAAAGGCCCTACAAAAAGC 59.930 43.478 0.00 0.00 0.00 3.51
2512 2604 3.312146 CCTGAATTTGCACAAACCAAACC 59.688 43.478 0.00 0.00 35.27 3.27
2555 2647 6.647067 CCTCCTAATTACATCCTCGTCATTTC 59.353 42.308 0.00 0.00 0.00 2.17
2563 2655 4.984146 AAGGCCTCCTAATTACATCCTC 57.016 45.455 5.23 0.00 31.13 3.71
2566 2658 5.048846 TCCAAAGGCCTCCTAATTACATC 57.951 43.478 5.23 0.00 31.13 3.06
2568 2660 3.371595 GCTCCAAAGGCCTCCTAATTACA 60.372 47.826 5.23 0.00 31.13 2.41
2569 2661 3.117851 AGCTCCAAAGGCCTCCTAATTAC 60.118 47.826 5.23 0.00 31.13 1.89
2572 2664 1.213926 CAGCTCCAAAGGCCTCCTAAT 59.786 52.381 5.23 0.00 31.13 1.73
2573 2665 0.620556 CAGCTCCAAAGGCCTCCTAA 59.379 55.000 5.23 0.00 31.13 2.69
2574 2666 0.547712 ACAGCTCCAAAGGCCTCCTA 60.548 55.000 5.23 0.00 31.13 2.94
2575 2667 1.846712 GACAGCTCCAAAGGCCTCCT 61.847 60.000 5.23 0.00 33.87 3.69
2576 2668 1.377856 GACAGCTCCAAAGGCCTCC 60.378 63.158 5.23 0.00 0.00 4.30
2577 2669 0.676151 CAGACAGCTCCAAAGGCCTC 60.676 60.000 5.23 0.00 0.00 4.70
2578 2670 1.377994 CAGACAGCTCCAAAGGCCT 59.622 57.895 0.00 0.00 0.00 5.19
2579 2671 0.957888 GACAGACAGCTCCAAAGGCC 60.958 60.000 0.00 0.00 0.00 5.19
2590 2682 3.064958 GCATGAATCACCATGACAGACAG 59.935 47.826 7.94 0.00 44.98 3.51
2592 2684 3.276857 AGCATGAATCACCATGACAGAC 58.723 45.455 7.94 0.00 44.98 3.51
2604 2696 9.142515 TGAAAAACAATATGTCAAGCATGAATC 57.857 29.630 0.00 0.00 38.47 2.52
2633 2890 7.766278 CAGCCTTAGACTAAGTTACAATGATGT 59.234 37.037 18.72 0.00 37.54 3.06
2637 2894 9.250624 GATACAGCCTTAGACTAAGTTACAATG 57.749 37.037 18.72 10.90 33.96 2.82
2638 2895 8.978472 TGATACAGCCTTAGACTAAGTTACAAT 58.022 33.333 18.72 8.35 33.96 2.71
2649 2906 3.526931 TGCACTGATACAGCCTTAGAC 57.473 47.619 0.00 0.00 34.37 2.59
2662 2919 2.622942 GGAACAGGTGATTTTGCACTGA 59.377 45.455 5.35 0.00 38.78 3.41
2664 2921 2.665165 TGGAACAGGTGATTTTGCACT 58.335 42.857 0.00 0.00 38.78 4.40
2681 2958 6.941857 TGTTGTAACAGAAGTGCTATATGGA 58.058 36.000 0.00 0.00 34.30 3.41
2694 2971 5.182190 TGCTTGTCACTTTTGTTGTAACAGA 59.818 36.000 0.00 0.00 40.50 3.41
2695 2972 5.398169 TGCTTGTCACTTTTGTTGTAACAG 58.602 37.500 0.00 0.00 40.50 3.16
2728 3018 4.793028 GCAATCATGAATGAGATGGCACAG 60.793 45.833 15.08 0.00 40.96 3.66
2766 3056 5.483685 TGTATAACCATCAGATACCAGCC 57.516 43.478 0.00 0.00 0.00 4.85
2798 3088 4.240881 TGCTCCATAAGAAGAATTGCCT 57.759 40.909 0.00 0.00 0.00 4.75
2838 3129 9.442047 GGATGGTTTCTATGGTCTATTCTAATG 57.558 37.037 0.00 0.00 0.00 1.90
2839 3130 8.606830 GGGATGGTTTCTATGGTCTATTCTAAT 58.393 37.037 0.00 0.00 0.00 1.73
2855 3146 2.876581 ACAACTCAAGGGGATGGTTTC 58.123 47.619 0.00 0.00 0.00 2.78
2856 3147 4.675063 ATACAACTCAAGGGGATGGTTT 57.325 40.909 0.00 0.00 0.00 3.27
2862 3153 5.280317 GGTGTTCTTATACAACTCAAGGGGA 60.280 44.000 0.00 0.00 32.92 4.81
2864 3155 5.556915 TGGTGTTCTTATACAACTCAAGGG 58.443 41.667 0.00 0.00 36.67 3.95
2915 3207 8.777865 TGAACATTTATCACTAAGGAACTGAG 57.222 34.615 0.00 0.00 44.40 3.35
2950 3242 4.147219 AGAAAACGAACAAGTAGCATGC 57.853 40.909 10.51 10.51 0.00 4.06
2951 3243 4.911610 CCAAGAAAACGAACAAGTAGCATG 59.088 41.667 0.00 0.00 0.00 4.06
2964 3256 5.621422 CATGACTACATCACCAAGAAAACG 58.379 41.667 0.00 0.00 41.24 3.60
2981 3273 5.104776 TCTAATGGCTTAGTTCAGCATGACT 60.105 40.000 0.00 0.00 42.10 3.41
2999 3291 7.134815 CGGGAGCAAGAATAAATGTTCTAATG 58.865 38.462 0.00 0.00 37.46 1.90
3001 3293 6.093495 CACGGGAGCAAGAATAAATGTTCTAA 59.907 38.462 0.00 0.00 37.46 2.10
3004 3296 4.662145 CACGGGAGCAAGAATAAATGTTC 58.338 43.478 0.00 0.00 0.00 3.18
3044 3343 9.167311 GAAGGTTTGAGTGTTCATAGATAACAT 57.833 33.333 0.00 0.00 38.95 2.71
3061 3360 6.356556 TCAGACAATCTTTCAGAAGGTTTGA 58.643 36.000 18.31 6.60 33.97 2.69
3063 3362 7.830099 ATTCAGACAATCTTTCAGAAGGTTT 57.170 32.000 0.00 0.00 33.97 3.27
3064 3363 7.655490 CAATTCAGACAATCTTTCAGAAGGTT 58.345 34.615 0.00 0.00 36.65 3.50
3173 3472 3.088532 AGCAAAGTGTGACAAGGTTCAA 58.911 40.909 0.00 0.00 0.00 2.69
3179 3478 5.274881 CTTAGCTAGCAAAGTGTGACAAG 57.725 43.478 18.83 0.73 0.00 3.16
3202 3505 2.806818 CAGCTATCAGCAGGCAGTAATG 59.193 50.000 0.38 0.00 45.56 1.90
3204 3507 1.833630 ACAGCTATCAGCAGGCAGTAA 59.166 47.619 0.38 0.00 45.56 2.24
3210 3513 7.976135 ATAATAAGAAACAGCTATCAGCAGG 57.024 36.000 0.38 0.00 45.56 4.85
3242 3545 0.745845 ATGGACTGCGACATTCCTGC 60.746 55.000 14.14 0.00 34.79 4.85
3284 3587 6.295916 CCCTTAGGTTCTTGTGAGTAGTTGAT 60.296 42.308 0.00 0.00 0.00 2.57
3335 3638 5.636903 TCCTCATATTCTTCCCTTTCCTG 57.363 43.478 0.00 0.00 0.00 3.86
3695 3998 9.592196 AGGGAATACTTGATACATTGCAATAAT 57.408 29.630 12.53 8.84 0.00 1.28
3727 4155 6.825721 ACCGAATTTGCATCTTCTTAGAAGAT 59.174 34.615 26.46 26.46 37.47 2.40
3732 4160 6.611381 TGAAACCGAATTTGCATCTTCTTAG 58.389 36.000 0.00 0.00 0.00 2.18
3773 4202 9.965824 ACATAACCATTTTACTTTCTGACTTTG 57.034 29.630 0.00 0.00 0.00 2.77
3774 4203 9.965824 CACATAACCATTTTACTTTCTGACTTT 57.034 29.630 0.00 0.00 0.00 2.66
3785 4214 4.815269 TGCAAGCCACATAACCATTTTAC 58.185 39.130 0.00 0.00 0.00 2.01
3790 4219 2.220653 ACTGCAAGCCACATAACCAT 57.779 45.000 0.00 0.00 37.60 3.55
3831 4260 8.630054 AACTAAAAGTGATGCCTAACATACAA 57.370 30.769 0.00 0.00 39.84 2.41
3877 4462 9.495754 CACAGAAAACTTTTACAAGAGAAGAAG 57.504 33.333 0.00 0.00 33.72 2.85
3880 4465 9.495754 CTTCACAGAAAACTTTTACAAGAGAAG 57.504 33.333 0.00 0.00 33.72 2.85
3893 4478 3.316308 GCATCACCACTTCACAGAAAACT 59.684 43.478 0.00 0.00 0.00 2.66
3935 4520 3.370840 TCCCTGTCAAAATGATGGAGG 57.629 47.619 4.60 0.00 0.00 4.30
3999 4584 3.323691 TGTCCCCATATATCGGTGTCTTG 59.676 47.826 0.00 0.00 0.00 3.02
4402 4991 3.019564 GGACAATCCCCAAGAAGATGTG 58.980 50.000 0.00 0.00 0.00 3.21
4539 5128 4.406648 TTGCTTGAGAGTCAAAGAGTCA 57.593 40.909 9.20 0.00 35.73 3.41
4674 5345 5.310409 ACACTCAAAAGGATCCAGAAGAA 57.690 39.130 15.82 0.00 0.00 2.52
4911 5584 5.200454 CAATCGCTAAATGACCTTTCATCG 58.800 41.667 0.00 0.00 42.00 3.84
4922 5595 8.882199 CACACGATATAAAACAATCGCTAAATG 58.118 33.333 4.75 0.00 46.87 2.32
4933 5606 6.019075 GCAGATAGCACACACGATATAAAACA 60.019 38.462 0.00 0.00 44.79 2.83
4975 5648 7.284489 ACACTCAGCTGATGGTTAAGTTAAAAA 59.716 33.333 18.63 0.00 0.00 1.94
4997 5670 5.121105 AGCTGACGGTTAAGTTAAAACACT 58.879 37.500 0.00 0.00 0.00 3.55
4998 5671 5.235831 AGAGCTGACGGTTAAGTTAAAACAC 59.764 40.000 0.00 0.00 0.00 3.32
5021 5855 6.092748 CCAAAATAACCTTTCATCCACGAAG 58.907 40.000 0.00 0.00 0.00 3.79
5024 5858 4.461081 TCCCAAAATAACCTTTCATCCACG 59.539 41.667 0.00 0.00 0.00 4.94
5079 5914 7.219726 GCAAAATGTTAGCATAAGAAAGCTCTC 59.780 37.037 0.00 0.00 42.05 3.20
5081 5916 7.031975 AGCAAAATGTTAGCATAAGAAAGCTC 58.968 34.615 0.00 0.00 42.05 4.09
5114 5949 9.059485 CGACAAGTATACGTCCTAATTATAAGC 57.941 37.037 0.00 0.00 0.00 3.09
5115 5950 9.552114 CCGACAAGTATACGTCCTAATTATAAG 57.448 37.037 0.00 0.00 0.00 1.73
5116 5951 8.514594 CCCGACAAGTATACGTCCTAATTATAA 58.485 37.037 0.00 0.00 0.00 0.98
5117 5952 7.665559 ACCCGACAAGTATACGTCCTAATTATA 59.334 37.037 0.00 0.00 0.00 0.98
5118 5953 6.491403 ACCCGACAAGTATACGTCCTAATTAT 59.509 38.462 0.00 0.00 0.00 1.28
5119 5954 5.827797 ACCCGACAAGTATACGTCCTAATTA 59.172 40.000 0.00 0.00 0.00 1.40
5120 5955 4.646492 ACCCGACAAGTATACGTCCTAATT 59.354 41.667 0.00 0.00 0.00 1.40
5121 5956 4.210331 ACCCGACAAGTATACGTCCTAAT 58.790 43.478 0.00 0.00 0.00 1.73
5122 5957 3.620488 ACCCGACAAGTATACGTCCTAA 58.380 45.455 0.00 0.00 0.00 2.69
5123 5958 3.281727 ACCCGACAAGTATACGTCCTA 57.718 47.619 0.00 0.00 0.00 2.94
5124 5959 2.134789 ACCCGACAAGTATACGTCCT 57.865 50.000 0.00 0.00 0.00 3.85
5125 5960 2.947448 AACCCGACAAGTATACGTCC 57.053 50.000 0.00 0.00 0.00 4.79
5126 5961 4.143052 CCAAAAACCCGACAAGTATACGTC 60.143 45.833 0.00 0.00 0.00 4.34
5127 5962 3.747529 CCAAAAACCCGACAAGTATACGT 59.252 43.478 0.00 0.00 0.00 3.57
5208 6043 4.695200 CAAGGTTCTTCGCGTAGTTAAAC 58.305 43.478 12.66 9.51 0.00 2.01
5218 6053 0.039256 TTGCATGCAAGGTTCTTCGC 60.039 50.000 28.80 0.00 0.00 4.70
5228 6063 2.681064 GGCCCTCCTTGCATGCAA 60.681 61.111 30.12 30.12 0.00 4.08
5229 6064 3.982111 TGGCCCTCCTTGCATGCA 61.982 61.111 18.46 18.46 0.00 3.96
5230 6065 3.455469 GTGGCCCTCCTTGCATGC 61.455 66.667 11.82 11.82 0.00 4.06
5231 6066 2.757099 GGTGGCCCTCCTTGCATG 60.757 66.667 0.00 0.00 0.00 4.06
5232 6067 4.431131 CGGTGGCCCTCCTTGCAT 62.431 66.667 0.00 0.00 0.00 3.96
5235 6070 4.101448 CTCCGGTGGCCCTCCTTG 62.101 72.222 0.00 0.00 0.00 3.61
5266 6101 4.598894 CAGGATCAGCCGCCTCCG 62.599 72.222 0.00 0.00 43.43 4.63
5267 6102 3.157252 TCAGGATCAGCCGCCTCC 61.157 66.667 0.00 0.00 43.43 4.30
5268 6103 2.420890 CTCAGGATCAGCCGCCTC 59.579 66.667 0.00 0.00 43.43 4.70
5269 6104 3.160047 CCTCAGGATCAGCCGCCT 61.160 66.667 0.00 0.00 43.43 5.52
5270 6105 3.474570 ACCTCAGGATCAGCCGCC 61.475 66.667 0.00 0.00 43.43 6.13
5271 6106 2.202987 CACCTCAGGATCAGCCGC 60.203 66.667 0.00 0.00 43.43 6.53
5272 6107 2.202987 GCACCTCAGGATCAGCCG 60.203 66.667 0.00 0.00 43.43 5.52
5273 6108 2.191641 GGCACCTCAGGATCAGCC 59.808 66.667 0.00 0.99 34.71 4.85
5300 6135 4.147449 TCCATGTCCTCGGCAGCG 62.147 66.667 0.00 0.00 0.00 5.18
5301 6136 2.512515 GTCCATGTCCTCGGCAGC 60.513 66.667 0.00 0.00 0.00 5.25
5302 6137 0.460987 GAAGTCCATGTCCTCGGCAG 60.461 60.000 0.00 0.00 0.00 4.85
5303 6138 1.596934 GAAGTCCATGTCCTCGGCA 59.403 57.895 0.00 0.00 0.00 5.69
5304 6139 1.519455 CGAAGTCCATGTCCTCGGC 60.519 63.158 0.00 0.00 0.00 5.54
5305 6140 1.519455 GCGAAGTCCATGTCCTCGG 60.519 63.158 7.78 0.00 0.00 4.63
5306 6141 1.519455 GGCGAAGTCCATGTCCTCG 60.519 63.158 0.00 0.00 0.00 4.63
5307 6142 1.519455 CGGCGAAGTCCATGTCCTC 60.519 63.158 0.00 0.00 0.00 3.71
5308 6143 2.283529 ACGGCGAAGTCCATGTCCT 61.284 57.895 16.62 0.00 0.00 3.85
5309 6144 2.100631 CACGGCGAAGTCCATGTCC 61.101 63.158 16.62 0.00 0.00 4.02
5310 6145 1.080093 TCACGGCGAAGTCCATGTC 60.080 57.895 16.62 0.00 0.00 3.06
5311 6146 1.374252 GTCACGGCGAAGTCCATGT 60.374 57.895 16.62 0.00 0.00 3.21
5312 6147 1.354337 CTGTCACGGCGAAGTCCATG 61.354 60.000 16.62 0.00 0.00 3.66
5313 6148 1.079819 CTGTCACGGCGAAGTCCAT 60.080 57.895 16.62 0.00 0.00 3.41
5314 6149 2.338620 CTGTCACGGCGAAGTCCA 59.661 61.111 16.62 6.49 0.00 4.02
5315 6150 3.112709 GCTGTCACGGCGAAGTCC 61.113 66.667 16.62 2.03 0.00 3.85
5316 6151 3.112709 GGCTGTCACGGCGAAGTC 61.113 66.667 16.62 2.95 36.46 3.01
5317 6152 3.923864 TGGCTGTCACGGCGAAGT 61.924 61.111 16.62 0.00 36.46 3.01
5318 6153 3.414700 GTGGCTGTCACGGCGAAG 61.415 66.667 16.62 5.73 36.46 3.79
5319 6154 4.980805 GGTGGCTGTCACGGCGAA 62.981 66.667 16.62 0.00 46.96 4.70
5322 6157 2.672996 ATTGGTGGCTGTCACGGC 60.673 61.111 6.28 0.00 46.96 5.68
5323 6158 0.249120 TAGATTGGTGGCTGTCACGG 59.751 55.000 6.28 0.00 46.96 4.94
5324 6159 1.204704 TCTAGATTGGTGGCTGTCACG 59.795 52.381 6.28 0.00 46.96 4.35
5325 6160 2.419297 CCTCTAGATTGGTGGCTGTCAC 60.419 54.545 3.25 3.25 45.34 3.67
5326 6161 1.833630 CCTCTAGATTGGTGGCTGTCA 59.166 52.381 0.00 0.00 0.00 3.58
5327 6162 1.834263 ACCTCTAGATTGGTGGCTGTC 59.166 52.381 2.93 0.00 34.90 3.51
5328 6163 1.958288 ACCTCTAGATTGGTGGCTGT 58.042 50.000 2.93 0.00 34.90 4.40
5329 6164 2.026822 ACAACCTCTAGATTGGTGGCTG 60.027 50.000 10.15 4.42 36.57 4.85
5330 6165 2.026822 CACAACCTCTAGATTGGTGGCT 60.027 50.000 10.15 0.00 36.57 4.75
5331 6166 2.359900 CACAACCTCTAGATTGGTGGC 58.640 52.381 10.15 0.00 36.57 5.01
5332 6167 2.359900 GCACAACCTCTAGATTGGTGG 58.640 52.381 10.15 7.37 36.57 4.61
5333 6168 2.359900 GGCACAACCTCTAGATTGGTG 58.640 52.381 10.15 8.12 36.57 4.17
5334 6169 1.282157 GGGCACAACCTCTAGATTGGT 59.718 52.381 10.15 4.67 39.10 3.67
5335 6170 1.743772 CGGGCACAACCTCTAGATTGG 60.744 57.143 10.15 4.06 39.10 3.16
5336 6171 1.656652 CGGGCACAACCTCTAGATTG 58.343 55.000 4.81 4.81 39.10 2.67
5337 6172 0.107654 GCGGGCACAACCTCTAGATT 60.108 55.000 0.00 0.00 39.10 2.40
5338 6173 1.522569 GCGGGCACAACCTCTAGAT 59.477 57.895 0.00 0.00 39.10 1.98
5339 6174 2.656069 GGCGGGCACAACCTCTAGA 61.656 63.158 0.00 0.00 39.10 2.43
5340 6175 2.125106 GGCGGGCACAACCTCTAG 60.125 66.667 0.00 0.00 39.10 2.43
5341 6176 4.077184 CGGCGGGCACAACCTCTA 62.077 66.667 0.00 0.00 39.10 2.43
5353 6188 3.976701 AAGTTGCTCATCCCGGCGG 62.977 63.158 21.46 21.46 0.00 6.13
5354 6189 2.436646 AAGTTGCTCATCCCGGCG 60.437 61.111 0.00 0.00 0.00 6.46
5355 6190 1.648467 GACAAGTTGCTCATCCCGGC 61.648 60.000 1.81 0.00 0.00 6.13
5356 6191 1.361668 CGACAAGTTGCTCATCCCGG 61.362 60.000 1.81 0.00 0.00 5.73
5357 6192 1.361668 CCGACAAGTTGCTCATCCCG 61.362 60.000 1.81 0.00 0.00 5.14
5358 6193 1.648467 GCCGACAAGTTGCTCATCCC 61.648 60.000 1.81 0.00 0.00 3.85
5359 6194 1.796796 GCCGACAAGTTGCTCATCC 59.203 57.895 1.81 0.00 0.00 3.51
5360 6195 1.421485 CGCCGACAAGTTGCTCATC 59.579 57.895 1.81 0.00 0.00 2.92
5361 6196 2.034879 CCGCCGACAAGTTGCTCAT 61.035 57.895 1.81 0.00 0.00 2.90
5362 6197 2.664851 CCGCCGACAAGTTGCTCA 60.665 61.111 1.81 0.00 0.00 4.26
5363 6198 2.357034 TCCGCCGACAAGTTGCTC 60.357 61.111 1.81 0.00 0.00 4.26
5364 6199 2.357517 CTCCGCCGACAAGTTGCT 60.358 61.111 1.81 0.00 0.00 3.91
5365 6200 4.090057 GCTCCGCCGACAAGTTGC 62.090 66.667 1.81 0.00 0.00 4.17
5366 6201 3.423154 GGCTCCGCCGACAAGTTG 61.423 66.667 0.00 0.00 39.62 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.