Multiple sequence alignment - TraesCS3D01G378400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G378400 chr3D 100.000 3604 0 0 1 3604 495494853 495491250 0.000000e+00 6656
1 TraesCS3D01G378400 chr3D 87.748 555 61 6 1 553 36201603 36201054 3.030000e-180 641
2 TraesCS3D01G378400 chr3B 91.020 1715 97 28 629 2322 654434903 654433225 0.000000e+00 2261
3 TraesCS3D01G378400 chr3B 85.252 556 69 12 5 552 822782667 822782117 8.740000e-156 560
4 TraesCS3D01G378400 chr3B 85.619 452 46 10 2362 2805 654433045 654432605 1.180000e-124 457
5 TraesCS3D01G378400 chr3B 81.312 503 57 21 3082 3552 654432401 654431904 1.220000e-99 374
6 TraesCS3D01G378400 chr3A 90.263 1561 107 27 781 2322 634945663 634944129 0.000000e+00 1999
7 TraesCS3D01G378400 chr3A 85.651 453 46 10 2362 2805 634943937 634943495 3.280000e-125 459
8 TraesCS3D01G378400 chr3A 83.206 131 18 2 2877 3003 634943487 634943357 2.270000e-22 117
9 TraesCS3D01G378400 chr1D 85.463 626 72 16 1 612 342219129 342219749 5.080000e-178 634
10 TraesCS3D01G378400 chr1D 83.657 618 81 17 6 612 322072514 322073122 6.760000e-157 564
11 TraesCS3D01G378400 chr1D 83.013 624 76 24 5 612 202538257 202538866 4.090000e-149 538
12 TraesCS3D01G378400 chr1D 93.296 179 11 1 2968 3146 238940380 238940203 2.760000e-66 263
13 TraesCS3D01G378400 chr4D 85.950 605 68 12 10 612 111646339 111645750 6.570000e-177 630
14 TraesCS3D01G378400 chr4D 85.315 572 71 12 9 573 486761287 486761852 2.410000e-161 579
15 TraesCS3D01G378400 chr4D 94.220 173 10 0 2968 3140 404108578 404108750 7.670000e-67 265
16 TraesCS3D01G378400 chr5B 84.530 627 77 12 1 612 485157591 485158212 1.430000e-168 603
17 TraesCS3D01G378400 chr2D 83.333 618 86 15 6 612 333496922 333497533 4.070000e-154 555
18 TraesCS3D01G378400 chr2D 95.349 172 7 1 2962 3133 516708307 516708477 4.590000e-69 272
19 TraesCS3D01G378400 chr2D 94.286 175 10 0 2968 3142 89441282 89441456 5.930000e-68 268
20 TraesCS3D01G378400 chr5A 95.402 174 7 1 2966 3138 651496988 651496815 3.540000e-70 276
21 TraesCS3D01G378400 chr6A 93.820 178 9 2 2967 3143 222571409 222571233 2.130000e-67 267
22 TraesCS3D01G378400 chr4A 94.253 174 9 1 2960 3133 18115562 18115390 7.670000e-67 265
23 TraesCS3D01G378400 chr7D 93.714 175 11 0 2968 3142 381458552 381458378 2.760000e-66 263
24 TraesCS3D01G378400 chr6D 93.714 175 11 0 2965 3139 406391356 406391530 2.760000e-66 263


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G378400 chr3D 495491250 495494853 3603 True 6656.000000 6656 100.000000 1 3604 1 chr3D.!!$R2 3603
1 TraesCS3D01G378400 chr3D 36201054 36201603 549 True 641.000000 641 87.748000 1 553 1 chr3D.!!$R1 552
2 TraesCS3D01G378400 chr3B 654431904 654434903 2999 True 1030.666667 2261 85.983667 629 3552 3 chr3B.!!$R2 2923
3 TraesCS3D01G378400 chr3B 822782117 822782667 550 True 560.000000 560 85.252000 5 552 1 chr3B.!!$R1 547
4 TraesCS3D01G378400 chr3A 634943357 634945663 2306 True 858.333333 1999 86.373333 781 3003 3 chr3A.!!$R1 2222
5 TraesCS3D01G378400 chr1D 342219129 342219749 620 False 634.000000 634 85.463000 1 612 1 chr1D.!!$F3 611
6 TraesCS3D01G378400 chr1D 322072514 322073122 608 False 564.000000 564 83.657000 6 612 1 chr1D.!!$F2 606
7 TraesCS3D01G378400 chr1D 202538257 202538866 609 False 538.000000 538 83.013000 5 612 1 chr1D.!!$F1 607
8 TraesCS3D01G378400 chr4D 111645750 111646339 589 True 630.000000 630 85.950000 10 612 1 chr4D.!!$R1 602
9 TraesCS3D01G378400 chr4D 486761287 486761852 565 False 579.000000 579 85.315000 9 573 1 chr4D.!!$F2 564
10 TraesCS3D01G378400 chr5B 485157591 485158212 621 False 603.000000 603 84.530000 1 612 1 chr5B.!!$F1 611
11 TraesCS3D01G378400 chr2D 333496922 333497533 611 False 555.000000 555 83.333000 6 612 1 chr2D.!!$F2 606

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
614 640 0.108472 CGTGGCTGAAGATGCTCAGA 60.108 55.0 4.95 0.0 44.82 3.27 F
991 1026 0.919289 ACATCCCCTTCCCACCGAAT 60.919 55.0 0.00 0.0 0.00 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2042 2116 0.465642 GGATTCCGGGAACACCATCC 60.466 60.0 22.07 16.63 40.22 3.51 R
2939 3176 0.179000 CCGGCAGCTACCAGAATTCT 59.821 55.0 0.88 0.88 0.00 2.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 0.254747 GGTGGATTCAACATCCCCGA 59.745 55.000 0.00 0.00 37.40 5.14
40 41 1.065418 GTGGATTCAACATCCCCGAGT 60.065 52.381 0.00 0.00 37.40 4.18
257 258 4.335647 CTGCTTCGGCTGGGTGGT 62.336 66.667 0.00 0.00 42.37 4.16
374 383 0.253327 GAATGGGAGGAAAGCCGAGT 59.747 55.000 0.00 0.00 39.96 4.18
388 401 3.327404 GAGTGGGAAAGCGGGGGA 61.327 66.667 0.00 0.00 0.00 4.81
403 416 0.319083 GGGGAAAACGGCGGAAAAAT 59.681 50.000 13.24 0.00 0.00 1.82
449 462 3.047877 ACGCCCCTTTTCGCTTCG 61.048 61.111 0.00 0.00 0.00 3.79
543 558 0.904865 AGATTCTGGGGCGTGACTGA 60.905 55.000 0.00 0.00 0.00 3.41
565 580 1.689352 CGATTTTTAGGCGTCGGCGT 61.689 55.000 12.58 4.67 41.24 5.68
612 638 1.742880 GCGTGGCTGAAGATGCTCA 60.743 57.895 0.00 0.00 0.00 4.26
613 639 1.703438 GCGTGGCTGAAGATGCTCAG 61.703 60.000 0.00 0.00 44.82 3.35
614 640 0.108472 CGTGGCTGAAGATGCTCAGA 60.108 55.000 4.95 0.00 44.82 3.27
615 641 1.673923 CGTGGCTGAAGATGCTCAGAA 60.674 52.381 4.95 0.00 44.82 3.02
616 642 2.430465 GTGGCTGAAGATGCTCAGAAA 58.570 47.619 4.95 0.00 44.82 2.52
617 643 2.161211 GTGGCTGAAGATGCTCAGAAAC 59.839 50.000 4.95 0.00 44.82 2.78
618 644 2.224597 TGGCTGAAGATGCTCAGAAACA 60.225 45.455 4.95 0.00 44.82 2.83
619 645 2.161211 GGCTGAAGATGCTCAGAAACAC 59.839 50.000 4.95 0.00 44.82 3.32
620 646 2.161211 GCTGAAGATGCTCAGAAACACC 59.839 50.000 4.95 0.00 44.82 4.16
621 647 2.414481 CTGAAGATGCTCAGAAACACCG 59.586 50.000 0.00 0.00 44.82 4.94
622 648 2.037121 TGAAGATGCTCAGAAACACCGA 59.963 45.455 0.00 0.00 0.00 4.69
623 649 2.839486 AGATGCTCAGAAACACCGAA 57.161 45.000 0.00 0.00 0.00 4.30
624 650 3.340814 AGATGCTCAGAAACACCGAAT 57.659 42.857 0.00 0.00 0.00 3.34
625 651 3.679389 AGATGCTCAGAAACACCGAATT 58.321 40.909 0.00 0.00 0.00 2.17
626 652 3.438087 AGATGCTCAGAAACACCGAATTG 59.562 43.478 0.00 0.00 0.00 2.32
627 653 2.844946 TGCTCAGAAACACCGAATTGA 58.155 42.857 0.00 0.00 0.00 2.57
628 654 3.411446 TGCTCAGAAACACCGAATTGAT 58.589 40.909 0.00 0.00 0.00 2.57
629 655 3.820467 TGCTCAGAAACACCGAATTGATT 59.180 39.130 0.00 0.00 0.00 2.57
630 656 5.000591 TGCTCAGAAACACCGAATTGATTA 58.999 37.500 0.00 0.00 0.00 1.75
631 657 5.106712 TGCTCAGAAACACCGAATTGATTAC 60.107 40.000 0.00 0.00 0.00 1.89
632 658 5.673818 GCTCAGAAACACCGAATTGATTACC 60.674 44.000 0.00 0.00 0.00 2.85
672 698 3.118884 ACACACCGTGTCAAGAGTTAACT 60.119 43.478 8.13 8.13 43.92 2.24
673 699 3.869246 CACACCGTGTCAAGAGTTAACTT 59.131 43.478 10.02 0.00 0.00 2.66
679 705 5.305812 CGTGTCAAGAGTTAACTTTATGCG 58.694 41.667 10.02 5.71 0.00 4.73
693 719 3.446310 TTATGCGATTCGGCTTGTCTA 57.554 42.857 8.34 0.00 0.00 2.59
856 883 0.983378 AAGATGGGACGGCCTAAGCT 60.983 55.000 7.57 0.06 39.73 3.74
878 905 3.194329 TCACCACATTTGAAACTGCAACA 59.806 39.130 0.00 0.00 0.00 3.33
935 964 3.367607 CAAAATCCGAACAGCGTTTTCA 58.632 40.909 0.00 0.00 38.67 2.69
968 997 1.308998 CCTTATCCACATCCGCAACC 58.691 55.000 0.00 0.00 0.00 3.77
988 1023 2.272146 CACATCCCCTTCCCACCG 59.728 66.667 0.00 0.00 0.00 4.94
991 1026 0.919289 ACATCCCCTTCCCACCGAAT 60.919 55.000 0.00 0.00 0.00 3.34
1006 1044 1.105167 CGAATCCAGCACCATGCCAT 61.105 55.000 0.00 0.00 46.52 4.40
1086 1124 2.439156 GCAGCAGCACCCCTTAGG 60.439 66.667 0.00 0.00 41.58 2.69
1278 1316 2.338620 CCGATATGCTTCCGCGGA 59.661 61.111 27.28 27.28 44.43 5.54
1367 1405 1.007336 CCCGTTGTCGCTGTGAGTAC 61.007 60.000 0.00 0.00 35.54 2.73
1379 1422 1.229400 TGAGTACACCCCAGACCCC 60.229 63.158 0.00 0.00 0.00 4.95
1383 1426 1.162329 TACACCCCAGACCCCACAT 59.838 57.895 0.00 0.00 0.00 3.21
1390 1433 1.584724 CCAGACCCCACATAGGAGTT 58.415 55.000 0.00 0.00 41.22 3.01
1391 1434 1.210478 CCAGACCCCACATAGGAGTTG 59.790 57.143 0.00 0.00 41.22 3.16
1393 1436 2.305927 CAGACCCCACATAGGAGTTGTT 59.694 50.000 0.00 0.00 41.22 2.83
1396 1439 3.496331 ACCCCACATAGGAGTTGTTTTG 58.504 45.455 0.00 0.00 41.22 2.44
1397 1440 3.117284 ACCCCACATAGGAGTTGTTTTGT 60.117 43.478 0.00 0.00 41.22 2.83
1398 1441 3.255642 CCCCACATAGGAGTTGTTTTGTG 59.744 47.826 0.00 0.00 41.22 3.33
1399 1442 3.888930 CCCACATAGGAGTTGTTTTGTGT 59.111 43.478 0.00 0.00 41.22 3.72
1401 1444 5.163457 CCCACATAGGAGTTGTTTTGTGTTT 60.163 40.000 0.00 0.00 41.22 2.83
1402 1445 6.337356 CCACATAGGAGTTGTTTTGTGTTTT 58.663 36.000 0.00 0.00 41.22 2.43
1412 1461 8.017587 AGTTGTTTTGTGTTTTCAGTGAATTC 57.982 30.769 6.36 0.00 0.00 2.17
1427 1476 8.063200 TCAGTGAATTCTTAATTCTACCTCGA 57.937 34.615 7.05 0.00 45.85 4.04
1441 1490 2.180276 ACCTCGATGTGCTAGGTCTTT 58.820 47.619 0.00 0.00 38.20 2.52
1444 1493 3.181471 CCTCGATGTGCTAGGTCTTTGAT 60.181 47.826 0.00 0.00 0.00 2.57
1616 1665 3.005261 AGTTGTGTTAATTGCGCAATCCA 59.995 39.130 33.93 25.83 38.39 3.41
1655 1704 7.148188 TGTCACAATTCTTTCTGATCCTAATGC 60.148 37.037 0.00 0.00 0.00 3.56
1664 1713 6.748333 TTCTGATCCTAATGCTTTTGTGAG 57.252 37.500 0.00 0.00 0.00 3.51
1677 1726 1.165907 TTGTGAGCGGCAAACTCAGG 61.166 55.000 1.45 0.00 44.51 3.86
1772 1821 1.421268 AGAGTTGTCATTGCCTCACCA 59.579 47.619 0.00 0.00 0.00 4.17
1930 1979 8.343168 AGCCTCAGTGAGTATATATCTTGTAC 57.657 38.462 18.74 0.00 0.00 2.90
1931 1980 7.945109 AGCCTCAGTGAGTATATATCTTGTACA 59.055 37.037 18.74 0.00 0.00 2.90
1950 1999 7.686438 TGTACAATAATCTGCAACTGTTCAT 57.314 32.000 0.00 0.00 0.00 2.57
1953 2002 9.410556 GTACAATAATCTGCAACTGTTCATTTT 57.589 29.630 0.00 0.00 0.00 1.82
1975 2024 6.804534 TTTTGTTTTCATTACTTGCAGTCG 57.195 33.333 0.00 0.00 0.00 4.18
1976 2025 4.481930 TGTTTTCATTACTTGCAGTCGG 57.518 40.909 0.00 0.00 0.00 4.79
1977 2026 3.252215 TGTTTTCATTACTTGCAGTCGGG 59.748 43.478 0.00 0.00 0.00 5.14
1978 2027 2.851263 TTCATTACTTGCAGTCGGGT 57.149 45.000 0.00 0.00 0.00 5.28
1979 2028 2.851263 TCATTACTTGCAGTCGGGTT 57.149 45.000 0.00 0.00 0.00 4.11
1980 2029 3.134574 TCATTACTTGCAGTCGGGTTT 57.865 42.857 0.00 0.00 0.00 3.27
1981 2030 3.482436 TCATTACTTGCAGTCGGGTTTT 58.518 40.909 0.00 0.00 0.00 2.43
1982 2031 4.643463 TCATTACTTGCAGTCGGGTTTTA 58.357 39.130 0.00 0.00 0.00 1.52
1983 2032 4.453136 TCATTACTTGCAGTCGGGTTTTAC 59.547 41.667 0.00 0.00 0.00 2.01
1984 2033 1.601166 ACTTGCAGTCGGGTTTTACC 58.399 50.000 0.00 0.00 37.60 2.85
1985 2034 1.142262 ACTTGCAGTCGGGTTTTACCT 59.858 47.619 0.00 0.00 38.64 3.08
1986 2035 2.227194 CTTGCAGTCGGGTTTTACCTT 58.773 47.619 0.00 0.00 38.64 3.50
1987 2036 2.351706 TGCAGTCGGGTTTTACCTTT 57.648 45.000 0.00 0.00 38.64 3.11
1992 2041 4.603985 CAGTCGGGTTTTACCTTTTCAAC 58.396 43.478 0.00 0.00 38.64 3.18
1994 2068 4.951715 AGTCGGGTTTTACCTTTTCAACTT 59.048 37.500 0.00 0.00 38.64 2.66
1997 2071 7.040892 AGTCGGGTTTTACCTTTTCAACTTATC 60.041 37.037 0.00 0.00 38.64 1.75
2042 2116 2.763249 GCTTTATGGGTGATGAAGCG 57.237 50.000 0.00 0.00 42.07 4.68
2054 2128 0.394352 ATGAAGCGGATGGTGTTCCC 60.394 55.000 0.00 0.00 31.61 3.97
2066 2140 1.002624 TGTTCCCGGAATCCAGCAC 60.003 57.895 0.73 0.00 0.00 4.40
2159 2233 5.577164 ACTTAATACAGCTGCAGTTAGAACG 59.423 40.000 15.27 0.00 0.00 3.95
2187 2261 1.771255 AGGAGTATGCCCAGGATGTTC 59.229 52.381 0.00 0.00 0.00 3.18
2213 2287 1.019673 AGCATGCAGATTACTTGCGG 58.980 50.000 21.98 0.00 41.59 5.69
2234 2308 5.622378 CGGAAAAACTATGAAGTTCTCAGC 58.378 41.667 4.17 0.00 45.37 4.26
2239 2313 7.807977 AAAACTATGAAGTTCTCAGCTTGAA 57.192 32.000 4.17 0.00 45.37 2.69
2250 2324 5.336150 TCTCAGCTTGAAGAGGTATGAAG 57.664 43.478 0.00 0.00 33.99 3.02
2256 2330 7.936847 TCAGCTTGAAGAGGTATGAAGTTTTTA 59.063 33.333 0.00 0.00 33.99 1.52
2258 2333 9.131791 AGCTTGAAGAGGTATGAAGTTTTTAAA 57.868 29.630 0.00 0.00 33.44 1.52
2280 2355 6.734104 AAACAACATGCAAGCAAAACTTTA 57.266 29.167 0.00 0.00 36.04 1.85
2282 2357 5.174395 ACAACATGCAAGCAAAACTTTACA 58.826 33.333 0.00 0.00 36.04 2.41
2285 2360 6.923928 ACATGCAAGCAAAACTTTACATTT 57.076 29.167 0.00 0.00 36.04 2.32
2307 2382 7.692460 TTTGATCATATCCATATCTTGGCAC 57.308 36.000 0.00 0.00 46.01 5.01
2308 2383 6.377245 TGATCATATCCATATCTTGGCACA 57.623 37.500 0.00 0.00 46.01 4.57
2328 2427 9.653287 TGGCACATATATACAGTAAATAGCTTC 57.347 33.333 0.00 0.00 0.00 3.86
2329 2428 9.653287 GGCACATATATACAGTAAATAGCTTCA 57.347 33.333 0.00 0.00 0.00 3.02
2343 2442 9.152595 GTAAATAGCTTCATGTACTATTAGGGC 57.847 37.037 13.93 0.00 35.97 5.19
2345 2444 5.832539 AGCTTCATGTACTATTAGGGCAT 57.167 39.130 0.00 0.00 0.00 4.40
2346 2445 5.555017 AGCTTCATGTACTATTAGGGCATG 58.445 41.667 16.82 16.82 38.49 4.06
2347 2446 4.697352 GCTTCATGTACTATTAGGGCATGG 59.303 45.833 20.00 11.85 37.92 3.66
2348 2447 4.286297 TCATGTACTATTAGGGCATGGC 57.714 45.455 11.56 11.56 37.92 4.40
2349 2448 2.831685 TGTACTATTAGGGCATGGCG 57.168 50.000 13.76 0.30 0.00 5.69
2463 2690 3.636300 TGTTGAACTGAATTCTTGGTGGG 59.364 43.478 7.05 0.00 38.25 4.61
2466 2693 3.230976 GAACTGAATTCTTGGTGGGGTT 58.769 45.455 7.05 0.00 34.15 4.11
2494 2721 4.379339 AATGAGTCGCTACTTTCTCCTC 57.621 45.455 0.00 0.00 35.56 3.71
2495 2722 2.791655 TGAGTCGCTACTTTCTCCTCA 58.208 47.619 0.00 0.00 35.56 3.86
2537 2764 5.104817 TCAGCTTGATGACAGATGGTTATCA 60.105 40.000 0.00 0.00 46.99 2.15
2540 2767 3.721035 TGATGACAGATGGTTATCAGCG 58.279 45.455 0.00 0.00 44.71 5.18
2582 2809 5.702670 CACCAGTGTGTTATCTGACTTCATT 59.297 40.000 0.00 0.00 37.72 2.57
2583 2810 5.934625 ACCAGTGTGTTATCTGACTTCATTC 59.065 40.000 0.00 0.00 34.02 2.67
2584 2811 6.169094 CCAGTGTGTTATCTGACTTCATTCT 58.831 40.000 0.00 0.00 34.02 2.40
2595 2822 7.984422 TCTGACTTCATTCTTAAATTCAGCA 57.016 32.000 0.00 0.00 30.86 4.41
2601 2828 8.810041 ACTTCATTCTTAAATTCAGCAAAGGAT 58.190 29.630 0.00 0.00 0.00 3.24
2613 2840 6.932356 TCAGCAAAGGATAGAAGCTAAATG 57.068 37.500 0.00 0.00 33.59 2.32
2616 2843 4.339247 GCAAAGGATAGAAGCTAAATGGCA 59.661 41.667 0.00 0.00 34.17 4.92
2626 2853 6.010219 AGAAGCTAAATGGCAGGTAAAAAGA 58.990 36.000 0.00 0.00 34.17 2.52
2628 2855 6.857437 AGCTAAATGGCAGGTAAAAAGAAT 57.143 33.333 0.00 0.00 34.17 2.40
2631 2858 8.416329 AGCTAAATGGCAGGTAAAAAGAATATG 58.584 33.333 0.00 0.00 34.17 1.78
2632 2859 7.653311 GCTAAATGGCAGGTAAAAAGAATATGG 59.347 37.037 0.00 0.00 0.00 2.74
2633 2860 5.535753 ATGGCAGGTAAAAAGAATATGGC 57.464 39.130 0.00 0.00 0.00 4.40
2641 2868 7.492344 CAGGTAAAAAGAATATGGCACCAATTC 59.508 37.037 9.78 9.78 0.00 2.17
2644 2871 4.660789 AAGAATATGGCACCAATTCTGC 57.339 40.909 17.39 1.18 39.34 4.26
2655 2882 3.688673 CACCAATTCTGCTTCTTCCTCTC 59.311 47.826 0.00 0.00 0.00 3.20
2677 2904 6.609212 TCTCAAGCTCTATTTACCATCAGACT 59.391 38.462 0.00 0.00 0.00 3.24
2684 2914 8.364142 GCTCTATTTACCATCAGACTATCAGTT 58.636 37.037 0.00 0.00 0.00 3.16
2720 2950 7.898014 TTCAATAGTTAGATGAGGCAGTCTA 57.102 36.000 0.00 0.00 0.00 2.59
2724 2954 8.363390 CAATAGTTAGATGAGGCAGTCTATTGA 58.637 37.037 13.04 0.00 42.33 2.57
2731 2962 4.973168 TGAGGCAGTCTATTGACAAGTTT 58.027 39.130 9.96 0.00 45.20 2.66
2743 2974 8.429641 TCTATTGACAAGTTTCTTGGTAAGAGT 58.570 33.333 12.95 0.00 39.03 3.24
2764 2996 7.533426 AGAGTATTTTTGTCACAGATCATTGC 58.467 34.615 0.00 0.00 0.00 3.56
2797 3030 6.773976 ACTGAAATTGAAGTGTTCTTGGAA 57.226 33.333 0.00 0.00 33.64 3.53
2805 3038 5.139727 TGAAGTGTTCTTGGAATGGTCATT 58.860 37.500 0.00 0.00 33.64 2.57
2807 3040 6.775142 TGAAGTGTTCTTGGAATGGTCATTTA 59.225 34.615 0.00 0.00 33.64 1.40
2808 3041 7.286546 TGAAGTGTTCTTGGAATGGTCATTTAA 59.713 33.333 0.00 0.00 33.64 1.52
2809 3042 7.781324 AGTGTTCTTGGAATGGTCATTTAAT 57.219 32.000 0.00 0.00 0.00 1.40
2812 3045 6.014755 TGTTCTTGGAATGGTCATTTAATGCA 60.015 34.615 0.00 0.00 0.00 3.96
2813 3046 6.795144 TCTTGGAATGGTCATTTAATGCAT 57.205 33.333 0.00 0.00 0.00 3.96
2814 3047 7.894753 TCTTGGAATGGTCATTTAATGCATA 57.105 32.000 0.00 0.00 0.00 3.14
2815 3048 8.303780 TCTTGGAATGGTCATTTAATGCATAA 57.696 30.769 0.00 0.00 0.00 1.90
2816 3049 8.756927 TCTTGGAATGGTCATTTAATGCATAAA 58.243 29.630 0.00 1.72 37.86 1.40
2817 3050 9.550406 CTTGGAATGGTCATTTAATGCATAAAT 57.450 29.630 0.00 4.11 43.45 1.40
2818 3051 9.902684 TTGGAATGGTCATTTAATGCATAAATT 57.097 25.926 0.00 0.00 41.27 1.82
2819 3052 9.902684 TGGAATGGTCATTTAATGCATAAATTT 57.097 25.926 0.00 0.00 41.27 1.82
2824 3057 9.729023 TGGTCATTTAATGCATAAATTTAGTCG 57.271 29.630 0.00 0.00 41.27 4.18
2825 3058 9.730420 GGTCATTTAATGCATAAATTTAGTCGT 57.270 29.630 0.00 0.00 41.27 4.34
2840 3073 6.897259 TTTAGTCGTACAATCATAAGCACC 57.103 37.500 0.00 0.00 0.00 5.01
2841 3074 4.737855 AGTCGTACAATCATAAGCACCT 57.262 40.909 0.00 0.00 0.00 4.00
2842 3075 5.086104 AGTCGTACAATCATAAGCACCTT 57.914 39.130 0.00 0.00 0.00 3.50
2843 3076 4.870426 AGTCGTACAATCATAAGCACCTTG 59.130 41.667 0.00 0.00 0.00 3.61
2844 3077 4.034048 GTCGTACAATCATAAGCACCTTGG 59.966 45.833 0.00 0.00 0.00 3.61
2845 3078 3.242739 CGTACAATCATAAGCACCTTGGC 60.243 47.826 0.00 0.00 0.00 4.52
2847 3080 2.756760 ACAATCATAAGCACCTTGGCTG 59.243 45.455 0.00 0.00 45.07 4.85
2848 3081 1.396653 ATCATAAGCACCTTGGCTGC 58.603 50.000 0.00 0.00 45.07 5.25
2849 3082 0.038021 TCATAAGCACCTTGGCTGCA 59.962 50.000 0.50 0.00 45.07 4.41
2850 3083 0.889994 CATAAGCACCTTGGCTGCAA 59.110 50.000 0.50 0.00 45.07 4.08
2851 3084 1.135199 CATAAGCACCTTGGCTGCAAG 60.135 52.381 0.50 3.53 45.07 4.01
2867 3100 3.593048 AGCAGGAAAGCTTGGGGA 58.407 55.556 0.00 0.00 43.70 4.81
2868 3101 1.381851 AGCAGGAAAGCTTGGGGAG 59.618 57.895 0.00 0.00 43.70 4.30
2869 3102 1.075659 GCAGGAAAGCTTGGGGAGT 59.924 57.895 0.00 0.00 0.00 3.85
2870 3103 0.962855 GCAGGAAAGCTTGGGGAGTC 60.963 60.000 0.00 0.00 0.00 3.36
2871 3104 0.695347 CAGGAAAGCTTGGGGAGTCT 59.305 55.000 0.00 0.00 0.00 3.24
2872 3105 0.988063 AGGAAAGCTTGGGGAGTCTC 59.012 55.000 0.00 0.00 0.00 3.36
2873 3106 0.988063 GGAAAGCTTGGGGAGTCTCT 59.012 55.000 0.00 0.00 0.00 3.10
2874 3107 1.352687 GGAAAGCTTGGGGAGTCTCTT 59.647 52.381 0.00 0.00 0.00 2.85
2875 3108 2.224892 GGAAAGCTTGGGGAGTCTCTTT 60.225 50.000 0.00 0.00 0.00 2.52
2879 3112 2.646798 AGCTTGGGGAGTCTCTTTTGAT 59.353 45.455 0.00 0.00 0.00 2.57
2882 3115 3.703001 TGGGGAGTCTCTTTTGATGTC 57.297 47.619 0.00 0.00 0.00 3.06
2889 3122 4.646572 AGTCTCTTTTGATGTCCTGGAAC 58.353 43.478 0.00 0.00 0.00 3.62
2897 3130 3.743521 TGATGTCCTGGAACAAACTGAG 58.256 45.455 0.00 0.00 38.70 3.35
2912 3145 7.715265 ACAAACTGAGAGTAGTACATTGTTG 57.285 36.000 2.52 0.78 29.48 3.33
2913 3146 7.272978 ACAAACTGAGAGTAGTACATTGTTGT 58.727 34.615 2.52 1.34 39.98 3.32
2914 3147 8.418662 ACAAACTGAGAGTAGTACATTGTTGTA 58.581 33.333 2.52 0.00 37.28 2.41
2915 3148 9.424319 CAAACTGAGAGTAGTACATTGTTGTAT 57.576 33.333 2.52 0.00 40.35 2.29
2916 3149 8.988064 AACTGAGAGTAGTACATTGTTGTATG 57.012 34.615 2.52 0.00 40.35 2.39
2917 3150 8.349568 ACTGAGAGTAGTACATTGTTGTATGA 57.650 34.615 2.52 0.00 40.35 2.15
2919 3152 8.981724 TGAGAGTAGTACATTGTTGTATGAAC 57.018 34.615 2.52 0.00 40.35 3.18
2939 3176 5.362717 TGAACTGAGTAGGAAGTTGTTCTGA 59.637 40.000 0.00 0.00 36.77 3.27
2981 3218 1.956159 GCTGTCTACTCCCTCCGTTCT 60.956 57.143 0.00 0.00 0.00 3.01
2982 3219 2.448453 CTGTCTACTCCCTCCGTTCTT 58.552 52.381 0.00 0.00 0.00 2.52
2989 3226 7.343833 TGTCTACTCCCTCCGTTCTTAAATATT 59.656 37.037 0.00 0.00 0.00 1.28
2990 3227 8.202811 GTCTACTCCCTCCGTTCTTAAATATTT 58.797 37.037 5.89 5.89 0.00 1.40
2992 3229 6.718294 ACTCCCTCCGTTCTTAAATATTTGT 58.282 36.000 11.05 0.00 0.00 2.83
2994 3231 7.668469 ACTCCCTCCGTTCTTAAATATTTGTTT 59.332 33.333 11.05 0.00 0.00 2.83
3016 3253 9.173021 TGTTTTTCTAGAGATTTCAACAAGTGA 57.827 29.630 0.00 0.00 0.00 3.41
3017 3254 9.439537 GTTTTTCTAGAGATTTCAACAAGTGAC 57.560 33.333 0.00 0.00 35.39 3.67
3019 3256 7.953158 TTCTAGAGATTTCAACAAGTGACTG 57.047 36.000 0.00 0.00 35.39 3.51
3020 3257 5.928839 TCTAGAGATTTCAACAAGTGACTGC 59.071 40.000 0.00 0.00 35.39 4.40
3024 3261 6.148480 AGAGATTTCAACAAGTGACTGCATAC 59.852 38.462 0.00 0.00 35.39 2.39
3025 3262 4.466567 TTTCAACAAGTGACTGCATACG 57.533 40.909 0.00 0.00 35.39 3.06
3028 3265 3.740832 TCAACAAGTGACTGCATACGAAG 59.259 43.478 0.00 0.00 0.00 3.79
3029 3266 2.069273 ACAAGTGACTGCATACGAAGC 58.931 47.619 0.00 0.00 0.00 3.86
3030 3267 2.068519 CAAGTGACTGCATACGAAGCA 58.931 47.619 0.00 0.00 40.19 3.91
3032 3269 2.766313 AGTGACTGCATACGAAGCAAA 58.234 42.857 0.00 0.00 42.17 3.68
3033 3270 3.138304 AGTGACTGCATACGAAGCAAAA 58.862 40.909 0.00 0.00 42.17 2.44
3035 3272 3.848019 GTGACTGCATACGAAGCAAAATG 59.152 43.478 0.00 0.00 42.17 2.32
3036 3273 3.750652 TGACTGCATACGAAGCAAAATGA 59.249 39.130 0.00 0.00 42.17 2.57
3040 3277 3.750652 TGCATACGAAGCAAAATGAGTGA 59.249 39.130 0.00 0.00 39.39 3.41
3041 3278 4.215185 TGCATACGAAGCAAAATGAGTGAA 59.785 37.500 0.00 0.00 39.39 3.18
3043 3280 5.453587 GCATACGAAGCAAAATGAGTGAATC 59.546 40.000 0.00 0.00 0.00 2.52
3045 3282 7.465916 GCATACGAAGCAAAATGAGTGAATCTA 60.466 37.037 0.00 0.00 0.00 1.98
3046 3283 6.170675 ACGAAGCAAAATGAGTGAATCTAC 57.829 37.500 0.00 0.00 0.00 2.59
3047 3284 5.700832 ACGAAGCAAAATGAGTGAATCTACA 59.299 36.000 0.00 0.00 0.00 2.74
3081 3318 9.769677 ATATGCCTATATATATCCGTATGTGGT 57.230 33.333 0.00 0.00 0.00 4.16
3083 3320 8.631480 TGCCTATATATATCCGTATGTGGTAG 57.369 38.462 0.00 0.00 0.00 3.18
3084 3321 8.222637 TGCCTATATATATCCGTATGTGGTAGT 58.777 37.037 0.00 0.00 0.00 2.73
3085 3322 8.728833 GCCTATATATATCCGTATGTGGTAGTC 58.271 40.741 0.00 0.00 0.00 2.59
3086 3323 9.228949 CCTATATATATCCGTATGTGGTAGTCC 57.771 40.741 0.00 0.00 0.00 3.85
3087 3324 9.788889 CTATATATATCCGTATGTGGTAGTCCA 57.211 37.037 0.00 0.00 42.05 4.02
3096 3333 6.238374 CCGTATGTGGTAGTCCATTTGAAATC 60.238 42.308 0.00 0.00 46.20 2.17
3099 3336 6.126863 TGTGGTAGTCCATTTGAAATCTCT 57.873 37.500 0.00 0.00 46.20 3.10
3100 3337 7.252612 TGTGGTAGTCCATTTGAAATCTCTA 57.747 36.000 0.00 0.00 46.20 2.43
3104 3341 9.581289 TGGTAGTCCATTTGAAATCTCTAAAAA 57.419 29.630 0.00 0.00 39.03 1.94
3108 3345 9.354673 AGTCCATTTGAAATCTCTAAAAAGACA 57.645 29.630 0.00 0.00 0.00 3.41
3109 3346 9.965824 GTCCATTTGAAATCTCTAAAAAGACAA 57.034 29.630 0.00 0.00 0.00 3.18
3143 3380 4.101119 ACGGAGGGAGTATCATTTAACAGG 59.899 45.833 0.00 0.00 36.25 4.00
3152 3389 3.825908 TCATTTAACAGGAGGGCCTTT 57.174 42.857 7.89 0.00 43.90 3.11
3156 3393 5.656416 TCATTTAACAGGAGGGCCTTTAATG 59.344 40.000 7.89 7.51 43.90 1.90
3160 3398 4.881157 ACAGGAGGGCCTTTAATGTTAT 57.119 40.909 7.89 0.00 43.90 1.89
3163 3401 4.580580 CAGGAGGGCCTTTAATGTTATCAC 59.419 45.833 7.89 0.00 43.90 3.06
3170 3408 5.576774 GGCCTTTAATGTTATCACAGTTTGC 59.423 40.000 0.00 0.00 35.94 3.68
3175 3413 3.624326 TGTTATCACAGTTTGCAGCAC 57.376 42.857 0.00 0.00 0.00 4.40
3179 3417 1.299620 CACAGTTTGCAGCACAGGC 60.300 57.895 0.00 0.00 41.61 4.85
3181 3419 1.299620 CAGTTTGCAGCACAGGCAC 60.300 57.895 0.00 0.00 44.61 5.01
3183 3421 1.008079 GTTTGCAGCACAGGCACTC 60.008 57.895 0.00 0.00 44.61 3.51
3185 3423 1.036481 TTTGCAGCACAGGCACTCAA 61.036 50.000 0.00 0.00 44.61 3.02
3186 3424 1.036481 TTGCAGCACAGGCACTCAAA 61.036 50.000 0.00 0.00 44.61 2.69
3187 3425 1.008079 GCAGCACAGGCACTCAAAC 60.008 57.895 0.00 0.00 44.61 2.93
3188 3426 1.450531 GCAGCACAGGCACTCAAACT 61.451 55.000 0.00 0.00 44.61 2.66
3189 3427 1.882912 CAGCACAGGCACTCAAACTA 58.117 50.000 0.00 0.00 44.61 2.24
3190 3428 2.430465 CAGCACAGGCACTCAAACTAT 58.570 47.619 0.00 0.00 44.61 2.12
3191 3429 2.816087 CAGCACAGGCACTCAAACTATT 59.184 45.455 0.00 0.00 44.61 1.73
3193 3431 4.637534 CAGCACAGGCACTCAAACTATTAT 59.362 41.667 0.00 0.00 44.61 1.28
3194 3432 5.124457 CAGCACAGGCACTCAAACTATTATT 59.876 40.000 0.00 0.00 44.61 1.40
3198 3444 6.803320 CACAGGCACTCAAACTATTATTGTTG 59.197 38.462 0.00 0.00 34.60 3.33
3204 3450 7.328493 GCACTCAAACTATTATTGTTGGTTTCC 59.672 37.037 0.00 0.00 0.00 3.13
3205 3451 8.356657 CACTCAAACTATTATTGTTGGTTTCCA 58.643 33.333 0.00 0.00 0.00 3.53
3206 3452 8.576442 ACTCAAACTATTATTGTTGGTTTCCAG 58.424 33.333 0.00 0.00 33.81 3.86
3211 3457 5.880054 ATTATTGTTGGTTTCCAGAGTCG 57.120 39.130 0.00 0.00 33.81 4.18
3216 3462 2.526304 TGGTTTCCAGAGTCGTTCAG 57.474 50.000 0.00 0.00 0.00 3.02
3218 3464 1.149148 GTTTCCAGAGTCGTTCAGGC 58.851 55.000 0.00 0.00 32.70 4.85
3220 3466 0.318441 TTCCAGAGTCGTTCAGGCTG 59.682 55.000 8.58 8.58 33.03 4.85
3221 3467 1.739562 CCAGAGTCGTTCAGGCTGC 60.740 63.158 10.34 0.00 33.03 5.25
3222 3468 1.005748 CAGAGTCGTTCAGGCTGCA 60.006 57.895 10.34 0.00 33.03 4.41
3233 3479 0.242825 CAGGCTGCAAACATGTCAGG 59.757 55.000 13.26 1.86 0.00 3.86
3235 3481 0.961019 GGCTGCAAACATGTCAGGAA 59.039 50.000 13.26 0.00 0.00 3.36
3281 3531 4.512198 TGTTGTGTGGTTTCGGTTATACTG 59.488 41.667 0.00 0.00 0.00 2.74
3292 3542 5.196341 TCGGTTATACTGGCATTACTCAG 57.804 43.478 0.00 0.00 37.07 3.35
3318 3568 6.266558 TGTGTGTTTATGGCAATTCTAGGTTT 59.733 34.615 0.00 0.00 0.00 3.27
3323 3573 7.121168 TGTTTATGGCAATTCTAGGTTTCAGAG 59.879 37.037 0.00 0.00 0.00 3.35
3334 3584 0.793250 GTTTCAGAGCTGGAACGAGC 59.207 55.000 5.94 0.74 39.07 5.03
3336 3586 0.037882 TTCAGAGCTGGAACGAGCAG 60.038 55.000 10.96 0.00 41.83 4.24
3339 3589 0.610509 AGAGCTGGAACGAGCAGAGA 60.611 55.000 10.96 0.00 41.83 3.10
3340 3590 0.457681 GAGCTGGAACGAGCAGAGAC 60.458 60.000 10.96 0.00 41.83 3.36
3341 3591 1.446966 GCTGGAACGAGCAGAGACC 60.447 63.158 4.09 0.00 38.95 3.85
3345 3597 1.286260 GAACGAGCAGAGACCGTGT 59.714 57.895 0.00 0.00 36.58 4.49
3363 3615 1.302192 TCTAACCAACCCACGCTGC 60.302 57.895 0.00 0.00 0.00 5.25
3367 3619 1.734388 AACCAACCCACGCTGCTTTC 61.734 55.000 0.00 0.00 0.00 2.62
3375 3627 0.368227 CACGCTGCTTTCATCTCGTC 59.632 55.000 0.00 0.00 0.00 4.20
3396 3648 0.674895 AACGAGAAGGTGATGCTGGC 60.675 55.000 0.00 0.00 0.00 4.85
3402 3654 2.012673 GAAGGTGATGCTGGCTACAAG 58.987 52.381 0.00 0.00 0.00 3.16
3404 3656 1.842562 AGGTGATGCTGGCTACAAGAT 59.157 47.619 0.00 0.00 0.00 2.40
3407 3659 0.585357 GATGCTGGCTACAAGATGCG 59.415 55.000 0.00 0.00 0.00 4.73
3409 3661 1.153369 GCTGGCTACAAGATGCGGA 60.153 57.895 0.00 0.00 0.00 5.54
3411 3663 0.461548 CTGGCTACAAGATGCGGAGA 59.538 55.000 0.00 0.00 0.00 3.71
3428 3680 1.222936 GATGTGGTCCAGGAGCAGG 59.777 63.158 22.20 0.00 40.79 4.85
3429 3681 2.883267 GATGTGGTCCAGGAGCAGGC 62.883 65.000 22.20 11.68 40.79 4.85
3430 3682 4.416738 GTGGTCCAGGAGCAGGCC 62.417 72.222 22.20 6.79 40.79 5.19
3438 3690 0.749649 CAGGAGCAGGCCAGTACTAG 59.250 60.000 5.01 0.00 0.00 2.57
3439 3691 0.336737 AGGAGCAGGCCAGTACTAGT 59.663 55.000 5.01 0.00 0.00 2.57
3440 3692 1.569548 AGGAGCAGGCCAGTACTAGTA 59.430 52.381 5.01 0.00 0.00 1.82
3441 3693 1.682323 GGAGCAGGCCAGTACTAGTAC 59.318 57.143 23.03 23.03 36.35 2.73
3442 3694 1.334243 GAGCAGGCCAGTACTAGTACG 59.666 57.143 23.87 18.55 40.80 3.67
3443 3695 1.101331 GCAGGCCAGTACTAGTACGT 58.899 55.000 23.87 12.02 40.80 3.57
3461 3713 1.882625 TGTGCAGCGTCACAGTGAC 60.883 57.895 22.09 22.09 41.57 3.67
3462 3714 2.280119 TGCAGCGTCACAGTGACC 60.280 61.111 25.11 18.06 44.20 4.02
3463 3715 3.044305 GCAGCGTCACAGTGACCC 61.044 66.667 25.11 17.85 44.20 4.46
3464 3716 2.421314 CAGCGTCACAGTGACCCA 59.579 61.111 25.11 0.00 44.20 4.51
3465 3717 1.004560 CAGCGTCACAGTGACCCAT 60.005 57.895 25.11 10.50 44.20 4.00
3466 3718 1.016130 CAGCGTCACAGTGACCCATC 61.016 60.000 25.11 13.17 44.20 3.51
3467 3719 2.094659 GCGTCACAGTGACCCATCG 61.095 63.158 25.11 15.53 44.20 3.84
3546 3816 5.509498 AGCATATCTTAAAGGAGCCAACAA 58.491 37.500 0.00 0.00 0.00 2.83
3552 3822 6.575162 TCTTAAAGGAGCCAACAAAGATTC 57.425 37.500 0.00 0.00 0.00 2.52
3553 3823 6.068010 TCTTAAAGGAGCCAACAAAGATTCA 58.932 36.000 0.00 0.00 0.00 2.57
3554 3824 6.549364 TCTTAAAGGAGCCAACAAAGATTCAA 59.451 34.615 0.00 0.00 0.00 2.69
3555 3825 5.813513 AAAGGAGCCAACAAAGATTCAAT 57.186 34.783 0.00 0.00 0.00 2.57
3556 3826 5.813513 AAGGAGCCAACAAAGATTCAATT 57.186 34.783 0.00 0.00 0.00 2.32
3557 3827 5.397142 AGGAGCCAACAAAGATTCAATTC 57.603 39.130 0.00 0.00 0.00 2.17
3558 3828 4.834496 AGGAGCCAACAAAGATTCAATTCA 59.166 37.500 0.00 0.00 0.00 2.57
3559 3829 5.305128 AGGAGCCAACAAAGATTCAATTCAA 59.695 36.000 0.00 0.00 0.00 2.69
3560 3830 5.636543 GGAGCCAACAAAGATTCAATTCAAG 59.363 40.000 0.00 0.00 0.00 3.02
3561 3831 6.409524 AGCCAACAAAGATTCAATTCAAGA 57.590 33.333 0.00 0.00 0.00 3.02
3562 3832 6.819284 AGCCAACAAAGATTCAATTCAAGAA 58.181 32.000 0.00 0.00 0.00 2.52
3563 3833 6.927381 AGCCAACAAAGATTCAATTCAAGAAG 59.073 34.615 0.00 0.00 0.00 2.85
3564 3834 6.146673 GCCAACAAAGATTCAATTCAAGAAGG 59.853 38.462 0.00 0.00 0.00 3.46
3565 3835 6.647895 CCAACAAAGATTCAATTCAAGAAGGG 59.352 38.462 0.00 0.00 0.00 3.95
3566 3836 7.436118 CAACAAAGATTCAATTCAAGAAGGGA 58.564 34.615 0.00 0.00 0.00 4.20
3567 3837 7.224522 ACAAAGATTCAATTCAAGAAGGGAG 57.775 36.000 0.00 0.00 0.00 4.30
3568 3838 7.006509 ACAAAGATTCAATTCAAGAAGGGAGA 58.993 34.615 0.00 0.00 0.00 3.71
3569 3839 7.176340 ACAAAGATTCAATTCAAGAAGGGAGAG 59.824 37.037 0.00 0.00 0.00 3.20
3570 3840 5.192176 AGATTCAATTCAAGAAGGGAGAGC 58.808 41.667 0.00 0.00 0.00 4.09
3571 3841 4.371624 TTCAATTCAAGAAGGGAGAGCA 57.628 40.909 0.00 0.00 0.00 4.26
3572 3842 4.581309 TCAATTCAAGAAGGGAGAGCAT 57.419 40.909 0.00 0.00 0.00 3.79
3573 3843 4.521146 TCAATTCAAGAAGGGAGAGCATC 58.479 43.478 0.00 0.00 0.00 3.91
3590 3860 3.294904 TCTGCAGGCAGAGATCTGA 57.705 52.632 19.37 0.00 46.80 3.27
3591 3861 1.790818 TCTGCAGGCAGAGATCTGAT 58.209 50.000 19.37 0.00 46.80 2.90
3592 3862 1.687660 TCTGCAGGCAGAGATCTGATC 59.312 52.381 19.37 9.65 46.80 2.92
3593 3863 1.689813 CTGCAGGCAGAGATCTGATCT 59.310 52.381 19.63 19.63 46.59 2.75
3594 3864 1.413077 TGCAGGCAGAGATCTGATCTG 59.587 52.381 24.04 17.79 46.59 2.90
3595 3865 1.687660 GCAGGCAGAGATCTGATCTGA 59.312 52.381 24.04 4.63 45.80 3.27
3596 3866 2.300723 GCAGGCAGAGATCTGATCTGAT 59.699 50.000 24.04 14.33 45.80 2.90
3597 3867 3.615592 GCAGGCAGAGATCTGATCTGATC 60.616 52.174 26.74 26.74 45.80 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 3.461773 CGGCTCACTCGGGGATGT 61.462 66.667 0.00 0.00 0.00 3.06
69 70 4.479993 GTGGCAGAGCAGGCGGAT 62.480 66.667 0.00 0.00 36.77 4.18
232 233 3.191539 GCCGAAGCAGAGGAAGCG 61.192 66.667 0.00 0.00 39.53 4.68
291 293 3.551915 GCCGCCGAAGAAGTACGC 61.552 66.667 0.00 0.00 0.00 4.42
374 383 1.532078 GTTTTCCCCCGCTTTCCCA 60.532 57.895 0.00 0.00 0.00 4.37
388 401 0.601576 GGCCATTTTTCCGCCGTTTT 60.602 50.000 0.00 0.00 31.92 2.43
467 481 4.016706 CCCGAGCCGAACCCAAGT 62.017 66.667 0.00 0.00 0.00 3.16
543 558 1.087771 CCGACGCCTAAAAATCGGCT 61.088 55.000 0.00 0.00 46.75 5.52
575 590 1.604593 CCCCAACAGCCTCACAAGG 60.605 63.158 0.00 0.00 46.44 3.61
577 592 2.520458 CCCCCAACAGCCTCACAA 59.480 61.111 0.00 0.00 0.00 3.33
578 593 4.284550 GCCCCCAACAGCCTCACA 62.285 66.667 0.00 0.00 0.00 3.58
603 629 2.839486 TCGGTGTTTCTGAGCATCTT 57.161 45.000 0.00 0.00 34.92 2.40
612 638 4.918588 AGGGTAATCAATTCGGTGTTTCT 58.081 39.130 0.00 0.00 0.00 2.52
613 639 6.746745 TTAGGGTAATCAATTCGGTGTTTC 57.253 37.500 0.00 0.00 0.00 2.78
614 640 7.527568 TTTTAGGGTAATCAATTCGGTGTTT 57.472 32.000 0.00 0.00 0.00 2.83
615 641 7.527568 TTTTTAGGGTAATCAATTCGGTGTT 57.472 32.000 0.00 0.00 0.00 3.32
660 686 6.035650 CCGAATCGCATAAAGTTAACTCTTGA 59.964 38.462 8.95 2.38 0.00 3.02
672 698 2.627945 AGACAAGCCGAATCGCATAAA 58.372 42.857 0.00 0.00 0.00 1.40
673 699 2.309528 AGACAAGCCGAATCGCATAA 57.690 45.000 0.00 0.00 0.00 1.90
693 719 6.291648 TGATGAAGCACTCTAGTCTTTCAT 57.708 37.500 14.07 14.07 39.13 2.57
779 805 3.063997 GTGGACATTTGGAGCGAGTAATG 59.936 47.826 0.00 0.00 34.87 1.90
818 844 8.971073 CCCATCTTAACAAAGTGGATATTTCTT 58.029 33.333 0.00 0.00 31.59 2.52
819 845 8.336235 TCCCATCTTAACAAAGTGGATATTTCT 58.664 33.333 0.00 0.00 31.59 2.52
825 851 4.261801 CGTCCCATCTTAACAAAGTGGAT 58.738 43.478 0.00 0.00 31.59 3.41
856 883 3.194329 TGTTGCAGTTTCAAATGTGGTGA 59.806 39.130 0.00 0.00 0.00 4.02
878 905 4.814224 ACATATGGGCTAAAATGGTCCT 57.186 40.909 7.80 0.00 0.00 3.85
935 964 2.356844 GGATAAGGGGCCGAAAGAAACT 60.357 50.000 0.00 0.00 0.00 2.66
968 997 2.616893 TGGGAAGGGGATGTGGGG 60.617 66.667 0.00 0.00 0.00 4.96
988 1023 1.117150 AATGGCATGGTGCTGGATTC 58.883 50.000 0.00 0.00 44.28 2.52
991 1026 2.352821 GCAATGGCATGGTGCTGGA 61.353 57.895 15.21 0.00 44.28 3.86
1278 1316 2.801631 GCTGAGGCTACGCTGGGAT 61.802 63.158 0.00 0.00 35.22 3.85
1359 1397 0.834687 GGGTCTGGGGTGTACTCACA 60.835 60.000 0.00 0.00 45.45 3.58
1367 1405 1.635817 CCTATGTGGGGTCTGGGGTG 61.636 65.000 0.00 0.00 0.00 4.61
1379 1422 7.032580 TGAAAACACAAAACAACTCCTATGTG 58.967 34.615 0.00 0.00 42.78 3.21
1383 1426 6.431543 TCACTGAAAACACAAAACAACTCCTA 59.568 34.615 0.00 0.00 0.00 2.94
1390 1433 9.698309 TTAAGAATTCACTGAAAACACAAAACA 57.302 25.926 8.44 0.00 0.00 2.83
1412 1461 6.153067 CCTAGCACATCGAGGTAGAATTAAG 58.847 44.000 0.77 0.00 38.91 1.85
1422 1471 2.166459 TCAAAGACCTAGCACATCGAGG 59.834 50.000 0.00 0.00 42.57 4.63
1427 1476 2.092212 CCCCATCAAAGACCTAGCACAT 60.092 50.000 0.00 0.00 0.00 3.21
1616 1665 5.533903 AGAATTGTGACAAAGAGAGCATTGT 59.466 36.000 0.62 0.00 42.18 2.71
1655 1704 1.065401 TGAGTTTGCCGCTCACAAAAG 59.935 47.619 0.00 0.00 38.64 2.27
1664 1713 1.008538 CACAACCTGAGTTTGCCGC 60.009 57.895 0.00 0.00 32.45 6.53
1677 1726 2.029244 CGTATCCATCGACTTGCACAAC 59.971 50.000 0.00 0.00 0.00 3.32
1772 1821 3.118261 TCAACTGCTTGAAGTCCTTGTCT 60.118 43.478 0.00 0.00 33.20 3.41
1886 1935 3.557595 GGCTCAAATCTACAGTTGGATCG 59.442 47.826 0.00 0.00 0.00 3.69
1960 2009 6.542386 GGTAAAACCCGACTGCAAGTAATGA 61.542 44.000 0.00 0.00 39.20 2.57
1961 2010 4.379082 GGTAAAACCCGACTGCAAGTAATG 60.379 45.833 0.00 0.00 39.20 1.90
1962 2011 3.754850 GGTAAAACCCGACTGCAAGTAAT 59.245 43.478 0.00 0.00 39.20 1.89
1963 2012 3.140623 GGTAAAACCCGACTGCAAGTAA 58.859 45.455 0.00 0.00 39.20 2.24
1964 2013 2.369532 AGGTAAAACCCGACTGCAAGTA 59.630 45.455 0.00 0.00 44.65 2.24
1965 2014 1.142262 AGGTAAAACCCGACTGCAAGT 59.858 47.619 0.00 0.00 46.82 3.16
1966 2015 1.892209 AGGTAAAACCCGACTGCAAG 58.108 50.000 0.00 0.00 39.75 4.01
1967 2016 2.351706 AAGGTAAAACCCGACTGCAA 57.648 45.000 0.00 0.00 39.75 4.08
1968 2017 2.351706 AAAGGTAAAACCCGACTGCA 57.648 45.000 0.00 0.00 39.75 4.41
1969 2018 2.619646 TGAAAAGGTAAAACCCGACTGC 59.380 45.455 0.00 0.00 39.75 4.40
1970 2019 4.337274 AGTTGAAAAGGTAAAACCCGACTG 59.663 41.667 0.00 0.00 39.75 3.51
1971 2020 4.529897 AGTTGAAAAGGTAAAACCCGACT 58.470 39.130 0.00 0.00 39.75 4.18
1972 2021 4.906065 AGTTGAAAAGGTAAAACCCGAC 57.094 40.909 0.00 0.00 39.75 4.79
1973 2022 6.771749 TGATAAGTTGAAAAGGTAAAACCCGA 59.228 34.615 0.00 0.00 39.75 5.14
1974 2023 6.972722 TGATAAGTTGAAAAGGTAAAACCCG 58.027 36.000 0.00 0.00 39.75 5.28
1975 2024 9.772973 AATTGATAAGTTGAAAAGGTAAAACCC 57.227 29.630 0.00 0.00 39.75 4.11
2012 2086 4.018870 TCACCCATAAAGCATCCTACACAA 60.019 41.667 0.00 0.00 0.00 3.33
2042 2116 0.465642 GGATTCCGGGAACACCATCC 60.466 60.000 22.07 16.63 40.22 3.51
2066 2140 0.895559 GACCAAAACCAGGAGCCAGG 60.896 60.000 0.00 0.00 0.00 4.45
2096 2170 5.885912 ACCATGTTTGTTCAGTAGTTTCACT 59.114 36.000 0.00 0.00 0.00 3.41
2187 2261 5.503683 GCAAGTAATCTGCATGCTTGACTAG 60.504 44.000 20.33 6.69 38.90 2.57
2213 2287 7.865707 TCAAGCTGAGAACTTCATAGTTTTTC 58.134 34.615 0.00 0.00 44.51 2.29
2250 2324 7.787823 TTTGCTTGCATGTTGTTTTAAAAAC 57.212 28.000 1.31 0.00 0.00 2.43
2256 2330 5.625921 AAGTTTTGCTTGCATGTTGTTTT 57.374 30.435 1.14 0.00 35.80 2.43
2258 2333 5.641209 TGTAAAGTTTTGCTTGCATGTTGTT 59.359 32.000 0.00 0.00 37.52 2.83
2260 2335 5.715429 TGTAAAGTTTTGCTTGCATGTTG 57.285 34.783 0.00 0.00 37.52 3.33
2263 2338 6.946165 TCAAATGTAAAGTTTTGCTTGCATG 58.054 32.000 0.00 0.00 37.52 4.06
2264 2339 7.441760 TGATCAAATGTAAAGTTTTGCTTGCAT 59.558 29.630 0.00 0.00 37.52 3.96
2265 2340 6.760298 TGATCAAATGTAAAGTTTTGCTTGCA 59.240 30.769 0.00 0.00 37.52 4.08
2266 2341 7.176285 TGATCAAATGTAAAGTTTTGCTTGC 57.824 32.000 0.00 0.00 37.52 4.01
2269 2344 9.807649 GGATATGATCAAATGTAAAGTTTTGCT 57.192 29.630 0.00 0.00 0.00 3.91
2270 2345 9.585099 TGGATATGATCAAATGTAAAGTTTTGC 57.415 29.630 0.00 0.00 0.00 3.68
2300 2375 9.658799 AGCTATTTACTGTATATATGTGCCAAG 57.341 33.333 0.00 0.00 0.00 3.61
2328 2427 3.002791 CGCCATGCCCTAATAGTACATG 58.997 50.000 10.88 10.88 38.24 3.21
2329 2428 2.615493 GCGCCATGCCCTAATAGTACAT 60.615 50.000 0.00 0.00 37.76 2.29
2347 2446 3.494045 AAAGAAATAGAAGGCAAGCGC 57.506 42.857 0.00 0.00 37.44 5.92
2348 2447 4.394920 TGGTAAAGAAATAGAAGGCAAGCG 59.605 41.667 0.00 0.00 0.00 4.68
2349 2448 5.897377 TGGTAAAGAAATAGAAGGCAAGC 57.103 39.130 0.00 0.00 0.00 4.01
2356 2455 7.648142 CACACTTGCTTGGTAAAGAAATAGAA 58.352 34.615 0.00 0.00 35.19 2.10
2358 2457 5.858581 GCACACTTGCTTGGTAAAGAAATAG 59.141 40.000 0.00 0.00 46.17 1.73
2403 2630 9.298250 ACATATCGATAAGACTGTAACCATACT 57.702 33.333 14.22 0.00 32.98 2.12
2434 2661 8.641541 ACCAAGAATTCAGTTCAACATTATTGT 58.358 29.630 8.44 0.00 39.39 2.71
2437 2664 7.309990 CCCACCAAGAATTCAGTTCAACATTAT 60.310 37.037 8.44 0.00 39.39 1.28
2441 2668 3.636300 CCCACCAAGAATTCAGTTCAACA 59.364 43.478 8.44 0.00 39.39 3.33
2443 2670 3.230134 CCCCACCAAGAATTCAGTTCAA 58.770 45.455 8.44 0.00 39.39 2.69
2478 2705 3.650139 TGTTTGAGGAGAAAGTAGCGAC 58.350 45.455 0.00 0.00 0.00 5.19
2480 2707 2.996621 CCTGTTTGAGGAGAAAGTAGCG 59.003 50.000 0.00 0.00 46.33 4.26
2481 2708 3.008049 TCCCTGTTTGAGGAGAAAGTAGC 59.992 47.826 0.00 0.00 46.33 3.58
2482 2709 4.891992 TCCCTGTTTGAGGAGAAAGTAG 57.108 45.455 0.00 0.00 46.33 2.57
2484 2711 3.395941 ACATCCCTGTTTGAGGAGAAAGT 59.604 43.478 0.00 0.00 46.33 2.66
2494 2721 5.047802 AGCTGAACATTTACATCCCTGTTTG 60.048 40.000 0.00 0.00 36.79 2.93
2495 2722 5.079643 AGCTGAACATTTACATCCCTGTTT 58.920 37.500 0.00 0.00 36.79 2.83
2537 2764 1.899814 TCATTACAAGTGTCCCTCGCT 59.100 47.619 0.00 0.00 38.68 4.93
2538 2765 2.000447 GTCATTACAAGTGTCCCTCGC 59.000 52.381 0.00 0.00 0.00 5.03
2540 2767 3.244422 TGGTGTCATTACAAGTGTCCCTC 60.244 47.826 0.00 0.00 37.36 4.30
2582 2809 7.831193 AGCTTCTATCCTTTGCTGAATTTAAGA 59.169 33.333 0.00 0.00 32.32 2.10
2583 2810 7.994194 AGCTTCTATCCTTTGCTGAATTTAAG 58.006 34.615 0.00 0.00 32.32 1.85
2584 2811 7.944729 AGCTTCTATCCTTTGCTGAATTTAA 57.055 32.000 0.00 0.00 32.32 1.52
2593 2820 4.339247 TGCCATTTAGCTTCTATCCTTTGC 59.661 41.667 0.00 0.00 0.00 3.68
2595 2822 5.136105 CCTGCCATTTAGCTTCTATCCTTT 58.864 41.667 0.00 0.00 0.00 3.11
2601 2828 7.172342 TCTTTTTACCTGCCATTTAGCTTCTA 58.828 34.615 0.00 0.00 0.00 2.10
2613 2840 4.441495 GGTGCCATATTCTTTTTACCTGCC 60.441 45.833 0.00 0.00 0.00 4.85
2616 2843 7.400052 AGAATTGGTGCCATATTCTTTTTACCT 59.600 33.333 15.97 0.00 33.94 3.08
2626 2853 4.284178 AGAAGCAGAATTGGTGCCATATT 58.716 39.130 5.88 0.00 42.24 1.28
2628 2855 3.370840 AGAAGCAGAATTGGTGCCATA 57.629 42.857 5.88 0.00 42.24 2.74
2631 2858 1.203287 GGAAGAAGCAGAATTGGTGCC 59.797 52.381 5.88 0.00 42.24 5.01
2632 2859 2.163211 GAGGAAGAAGCAGAATTGGTGC 59.837 50.000 1.75 1.75 41.54 5.01
2633 2860 3.683802 AGAGGAAGAAGCAGAATTGGTG 58.316 45.455 0.00 0.00 34.72 4.17
2641 2868 2.234414 AGAGCTTGAGAGGAAGAAGCAG 59.766 50.000 0.00 0.00 43.78 4.24
2644 2871 6.983890 GGTAAATAGAGCTTGAGAGGAAGAAG 59.016 42.308 0.00 0.00 0.00 2.85
2655 2882 8.363390 TGATAGTCTGATGGTAAATAGAGCTTG 58.637 37.037 0.00 0.00 0.00 4.01
2694 2924 7.044798 AGACTGCCTCATCTAACTATTGAAAC 58.955 38.462 0.00 0.00 0.00 2.78
2720 2950 9.574516 AATACTCTTACCAAGAAACTTGTCAAT 57.425 29.630 9.99 0.00 37.02 2.57
2731 2962 8.208224 TCTGTGACAAAAATACTCTTACCAAGA 58.792 33.333 0.00 0.00 35.87 3.02
2743 2974 7.660112 ACAAGCAATGATCTGTGACAAAAATA 58.340 30.769 0.00 0.00 0.00 1.40
2781 3014 4.531854 TGACCATTCCAAGAACACTTCAA 58.468 39.130 0.00 0.00 0.00 2.69
2782 3015 4.163441 TGACCATTCCAAGAACACTTCA 57.837 40.909 0.00 0.00 0.00 3.02
2788 3021 6.397272 TGCATTAAATGACCATTCCAAGAAC 58.603 36.000 0.00 0.00 0.00 3.01
2791 3024 8.945481 TTTATGCATTAAATGACCATTCCAAG 57.055 30.769 3.54 0.00 0.00 3.61
2814 3047 8.395633 GGTGCTTATGATTGTACGACTAAATTT 58.604 33.333 0.00 0.00 0.00 1.82
2815 3048 7.769044 AGGTGCTTATGATTGTACGACTAAATT 59.231 33.333 0.00 0.00 0.00 1.82
2816 3049 7.272978 AGGTGCTTATGATTGTACGACTAAAT 58.727 34.615 0.00 0.00 0.00 1.40
2817 3050 6.636705 AGGTGCTTATGATTGTACGACTAAA 58.363 36.000 0.00 0.00 0.00 1.85
2818 3051 6.216801 AGGTGCTTATGATTGTACGACTAA 57.783 37.500 0.00 0.00 0.00 2.24
2819 3052 5.847111 AGGTGCTTATGATTGTACGACTA 57.153 39.130 0.00 0.00 0.00 2.59
2820 3053 4.737855 AGGTGCTTATGATTGTACGACT 57.262 40.909 0.00 0.00 0.00 4.18
2821 3054 4.034048 CCAAGGTGCTTATGATTGTACGAC 59.966 45.833 0.00 0.00 0.00 4.34
2822 3055 4.188462 CCAAGGTGCTTATGATTGTACGA 58.812 43.478 0.00 0.00 0.00 3.43
2823 3056 3.242739 GCCAAGGTGCTTATGATTGTACG 60.243 47.826 0.00 0.00 0.00 3.67
2824 3057 3.947834 AGCCAAGGTGCTTATGATTGTAC 59.052 43.478 0.00 0.00 38.85 2.90
2825 3058 3.947196 CAGCCAAGGTGCTTATGATTGTA 59.053 43.478 0.00 0.00 40.32 2.41
2826 3059 2.756760 CAGCCAAGGTGCTTATGATTGT 59.243 45.455 0.00 0.00 40.32 2.71
2827 3060 3.431922 CAGCCAAGGTGCTTATGATTG 57.568 47.619 0.00 0.00 40.32 2.67
2837 3070 2.649034 CTGCTTGCAGCCAAGGTG 59.351 61.111 9.78 0.00 46.77 4.00
2838 3071 2.599578 CCTGCTTGCAGCCAAGGT 60.600 61.111 16.37 0.00 46.77 3.50
2839 3072 1.466025 TTTCCTGCTTGCAGCCAAGG 61.466 55.000 16.37 4.47 46.77 3.61
2841 3074 2.043625 CTTTCCTGCTTGCAGCCAA 58.956 52.632 16.37 8.72 41.51 4.52
2842 3075 2.567497 GCTTTCCTGCTTGCAGCCA 61.567 57.895 16.37 3.07 41.51 4.75
2843 3076 2.260743 GCTTTCCTGCTTGCAGCC 59.739 61.111 16.37 0.00 41.51 4.85
2844 3077 3.363351 AGCTTTCCTGCTTGCAGC 58.637 55.556 16.37 6.40 40.93 5.25
2850 3083 1.381851 CTCCCCAAGCTTTCCTGCT 59.618 57.895 0.00 0.00 46.40 4.24
2851 3084 0.962855 GACTCCCCAAGCTTTCCTGC 60.963 60.000 0.00 0.00 0.00 4.85
2852 3085 0.695347 AGACTCCCCAAGCTTTCCTG 59.305 55.000 0.00 0.00 0.00 3.86
2853 3086 0.988063 GAGACTCCCCAAGCTTTCCT 59.012 55.000 0.00 0.00 0.00 3.36
2854 3087 0.988063 AGAGACTCCCCAAGCTTTCC 59.012 55.000 0.00 0.00 0.00 3.13
2855 3088 2.869101 AAGAGACTCCCCAAGCTTTC 57.131 50.000 0.00 0.00 0.00 2.62
2856 3089 3.117512 TCAAAAGAGACTCCCCAAGCTTT 60.118 43.478 0.00 0.00 0.00 3.51
2857 3090 2.443255 TCAAAAGAGACTCCCCAAGCTT 59.557 45.455 0.00 0.00 0.00 3.74
2858 3091 2.057922 TCAAAAGAGACTCCCCAAGCT 58.942 47.619 0.00 0.00 0.00 3.74
2859 3092 2.568623 TCAAAAGAGACTCCCCAAGC 57.431 50.000 0.00 0.00 0.00 4.01
2860 3093 4.006319 GACATCAAAAGAGACTCCCCAAG 58.994 47.826 0.00 0.00 0.00 3.61
2861 3094 3.244911 GGACATCAAAAGAGACTCCCCAA 60.245 47.826 0.00 0.00 0.00 4.12
2862 3095 2.305927 GGACATCAAAAGAGACTCCCCA 59.694 50.000 0.00 0.00 0.00 4.96
2863 3096 2.573915 AGGACATCAAAAGAGACTCCCC 59.426 50.000 0.00 0.00 0.00 4.81
2864 3097 3.604582 CAGGACATCAAAAGAGACTCCC 58.395 50.000 0.00 0.00 0.00 4.30
2865 3098 3.261897 TCCAGGACATCAAAAGAGACTCC 59.738 47.826 0.00 0.00 0.00 3.85
2866 3099 4.543590 TCCAGGACATCAAAAGAGACTC 57.456 45.455 0.00 0.00 0.00 3.36
2867 3100 4.103153 TGTTCCAGGACATCAAAAGAGACT 59.897 41.667 0.00 0.00 0.00 3.24
2868 3101 4.389374 TGTTCCAGGACATCAAAAGAGAC 58.611 43.478 0.00 0.00 0.00 3.36
2869 3102 4.705110 TGTTCCAGGACATCAAAAGAGA 57.295 40.909 0.00 0.00 0.00 3.10
2870 3103 5.300286 AGTTTGTTCCAGGACATCAAAAGAG 59.700 40.000 12.49 0.00 31.45 2.85
2871 3104 5.067674 CAGTTTGTTCCAGGACATCAAAAGA 59.932 40.000 12.49 0.00 31.45 2.52
2872 3105 5.067674 TCAGTTTGTTCCAGGACATCAAAAG 59.932 40.000 12.49 9.77 31.45 2.27
2873 3106 4.952957 TCAGTTTGTTCCAGGACATCAAAA 59.047 37.500 12.49 0.00 31.45 2.44
2874 3107 4.531854 TCAGTTTGTTCCAGGACATCAAA 58.468 39.130 8.67 8.67 0.00 2.69
2875 3108 4.136796 CTCAGTTTGTTCCAGGACATCAA 58.863 43.478 0.00 0.00 0.00 2.57
2879 3112 2.771943 ACTCTCAGTTTGTTCCAGGACA 59.228 45.455 0.00 0.00 0.00 4.02
2882 3115 4.608948 ACTACTCTCAGTTTGTTCCAGG 57.391 45.455 0.00 0.00 0.00 4.45
2889 3122 7.715265 ACAACAATGTACTACTCTCAGTTTG 57.285 36.000 0.00 0.00 38.24 2.93
2897 3130 8.981724 TCAGTTCATACAACAATGTACTACTC 57.018 34.615 0.00 0.00 44.47 2.59
2912 3145 7.329717 CAGAACAACTTCCTACTCAGTTCATAC 59.670 40.741 0.00 0.00 37.07 2.39
2913 3146 7.232737 TCAGAACAACTTCCTACTCAGTTCATA 59.767 37.037 0.00 0.00 37.07 2.15
2914 3147 6.042093 TCAGAACAACTTCCTACTCAGTTCAT 59.958 38.462 0.00 0.00 37.07 2.57
2915 3148 5.362717 TCAGAACAACTTCCTACTCAGTTCA 59.637 40.000 0.00 0.00 37.07 3.18
2916 3149 5.844004 TCAGAACAACTTCCTACTCAGTTC 58.156 41.667 0.00 0.00 35.40 3.01
2917 3150 5.598830 TCTCAGAACAACTTCCTACTCAGTT 59.401 40.000 0.00 0.00 33.29 3.16
2919 3152 5.713792 TCTCAGAACAACTTCCTACTCAG 57.286 43.478 0.00 0.00 0.00 3.35
2939 3176 0.179000 CCGGCAGCTACCAGAATTCT 59.821 55.000 0.88 0.88 0.00 2.40
2989 3226 9.787532 CACTTGTTGAAATCTCTAGAAAAACAA 57.212 29.630 0.00 4.48 35.60 2.83
2990 3227 9.173021 TCACTTGTTGAAATCTCTAGAAAAACA 57.827 29.630 0.00 0.00 0.00 2.83
2992 3229 9.396022 AGTCACTTGTTGAAATCTCTAGAAAAA 57.604 29.630 0.00 0.00 35.39 1.94
2994 3231 7.041780 GCAGTCACTTGTTGAAATCTCTAGAAA 60.042 37.037 0.00 0.00 35.39 2.52
3003 3240 4.754618 TCGTATGCAGTCACTTGTTGAAAT 59.245 37.500 0.00 0.00 35.39 2.17
3007 3244 3.665323 GCTTCGTATGCAGTCACTTGTTG 60.665 47.826 0.00 0.00 0.00 3.33
3008 3245 2.480419 GCTTCGTATGCAGTCACTTGTT 59.520 45.455 0.00 0.00 0.00 2.83
3009 3246 2.069273 GCTTCGTATGCAGTCACTTGT 58.931 47.619 0.00 0.00 0.00 3.16
3010 3247 2.068519 TGCTTCGTATGCAGTCACTTG 58.931 47.619 0.00 0.00 35.31 3.16
3013 3250 3.536158 TTTTGCTTCGTATGCAGTCAC 57.464 42.857 0.00 0.00 41.71 3.67
3016 3253 3.753272 ACTCATTTTGCTTCGTATGCAGT 59.247 39.130 0.00 0.00 41.71 4.40
3017 3254 4.093514 CACTCATTTTGCTTCGTATGCAG 58.906 43.478 0.00 0.00 41.71 4.41
3019 3256 4.340894 TCACTCATTTTGCTTCGTATGC 57.659 40.909 0.00 0.00 0.00 3.14
3020 3257 6.779117 AGATTCACTCATTTTGCTTCGTATG 58.221 36.000 0.00 0.00 0.00 2.39
3024 3261 6.017933 GTGTAGATTCACTCATTTTGCTTCG 58.982 40.000 0.00 0.00 35.68 3.79
3025 3262 7.138692 AGTGTAGATTCACTCATTTTGCTTC 57.861 36.000 0.00 0.00 44.07 3.86
3028 3265 9.677567 TTTAAAGTGTAGATTCACTCATTTTGC 57.322 29.630 0.00 0.00 46.25 3.68
3035 3272 9.937175 GGCATATTTTAAAGTGTAGATTCACTC 57.063 33.333 0.00 0.00 46.25 3.51
3055 3292 9.769677 ACCACATACGGATATATATAGGCATAT 57.230 33.333 0.00 0.00 0.00 1.78
3057 3294 9.244292 CTACCACATACGGATATATATAGGCAT 57.756 37.037 0.00 0.00 0.00 4.40
3058 3295 8.222637 ACTACCACATACGGATATATATAGGCA 58.777 37.037 0.00 0.00 0.00 4.75
3060 3297 9.228949 GGACTACCACATACGGATATATATAGG 57.771 40.741 0.00 0.00 35.97 2.57
3082 3319 9.354673 TGTCTTTTTAGAGATTTCAAATGGACT 57.645 29.630 0.00 0.00 0.00 3.85
3083 3320 9.965824 TTGTCTTTTTAGAGATTTCAAATGGAC 57.034 29.630 0.00 0.00 0.00 4.02
3099 3336 9.169592 CTCCGTCCCTAAATATTTGTCTTTTTA 57.830 33.333 11.05 0.00 0.00 1.52
3100 3337 7.122204 CCTCCGTCCCTAAATATTTGTCTTTTT 59.878 37.037 11.05 0.00 0.00 1.94
3104 3341 4.102681 CCCTCCGTCCCTAAATATTTGTCT 59.897 45.833 11.05 0.00 0.00 3.41
3105 3342 4.102054 TCCCTCCGTCCCTAAATATTTGTC 59.898 45.833 11.05 0.00 0.00 3.18
3106 3343 4.042174 TCCCTCCGTCCCTAAATATTTGT 58.958 43.478 11.05 0.00 0.00 2.83
3108 3345 4.304659 ACTCCCTCCGTCCCTAAATATTT 58.695 43.478 5.89 5.89 0.00 1.40
3109 3346 3.937751 ACTCCCTCCGTCCCTAAATATT 58.062 45.455 0.00 0.00 0.00 1.28
3116 3353 0.861155 ATGATACTCCCTCCGTCCCT 59.139 55.000 0.00 0.00 0.00 4.20
3117 3354 1.718280 AATGATACTCCCTCCGTCCC 58.282 55.000 0.00 0.00 0.00 4.46
3119 3356 5.272283 TGTTAAATGATACTCCCTCCGTC 57.728 43.478 0.00 0.00 0.00 4.79
3122 3359 5.221742 CCTCCTGTTAAATGATACTCCCTCC 60.222 48.000 0.00 0.00 0.00 4.30
3143 3380 5.193679 ACTGTGATAACATTAAAGGCCCTC 58.806 41.667 0.00 0.00 0.00 4.30
3152 3389 5.240403 TGTGCTGCAAACTGTGATAACATTA 59.760 36.000 2.77 0.00 0.00 1.90
3156 3393 3.558505 CTGTGCTGCAAACTGTGATAAC 58.441 45.455 2.77 0.00 0.00 1.89
3160 3398 1.727511 GCCTGTGCTGCAAACTGTGA 61.728 55.000 2.77 0.00 33.53 3.58
3163 3401 1.299620 GTGCCTGTGCTGCAAACTG 60.300 57.895 2.77 0.00 41.06 3.16
3170 3408 1.882912 TAGTTTGAGTGCCTGTGCTG 58.117 50.000 0.00 0.00 38.71 4.41
3175 3413 6.071952 ACCAACAATAATAGTTTGAGTGCCTG 60.072 38.462 0.00 0.00 0.00 4.85
3179 3417 8.356657 TGGAAACCAACAATAATAGTTTGAGTG 58.643 33.333 0.00 0.00 31.14 3.51
3181 3419 8.792633 TCTGGAAACCAACAATAATAGTTTGAG 58.207 33.333 0.00 0.00 30.80 3.02
3183 3421 8.576442 ACTCTGGAAACCAACAATAATAGTTTG 58.424 33.333 0.00 0.00 30.80 2.93
3185 3423 7.119262 CGACTCTGGAAACCAACAATAATAGTT 59.881 37.037 0.00 0.00 30.80 2.24
3186 3424 6.594159 CGACTCTGGAAACCAACAATAATAGT 59.406 38.462 0.00 0.00 30.80 2.12
3187 3425 6.594159 ACGACTCTGGAAACCAACAATAATAG 59.406 38.462 0.00 0.00 30.80 1.73
3188 3426 6.469410 ACGACTCTGGAAACCAACAATAATA 58.531 36.000 0.00 0.00 30.80 0.98
3189 3427 5.313712 ACGACTCTGGAAACCAACAATAAT 58.686 37.500 0.00 0.00 30.80 1.28
3190 3428 4.710324 ACGACTCTGGAAACCAACAATAA 58.290 39.130 0.00 0.00 30.80 1.40
3191 3429 4.345859 ACGACTCTGGAAACCAACAATA 57.654 40.909 0.00 0.00 30.80 1.90
3193 3431 2.702592 ACGACTCTGGAAACCAACAA 57.297 45.000 0.00 0.00 30.80 2.83
3194 3432 2.093394 TGAACGACTCTGGAAACCAACA 60.093 45.455 0.00 0.00 30.80 3.33
3198 3444 1.797025 CCTGAACGACTCTGGAAACC 58.203 55.000 8.73 0.00 44.14 3.27
3204 3450 0.601046 TTGCAGCCTGAACGACTCTG 60.601 55.000 0.00 0.00 0.00 3.35
3205 3451 0.106708 TTTGCAGCCTGAACGACTCT 59.893 50.000 0.00 0.00 0.00 3.24
3206 3452 0.235926 GTTTGCAGCCTGAACGACTC 59.764 55.000 0.00 0.00 0.00 3.36
3211 3457 1.337703 TGACATGTTTGCAGCCTGAAC 59.662 47.619 0.00 0.00 0.00 3.18
3216 3462 0.961019 TTCCTGACATGTTTGCAGCC 59.039 50.000 0.00 0.00 0.00 4.85
3218 3464 3.067180 ACTGTTTCCTGACATGTTTGCAG 59.933 43.478 0.00 2.66 0.00 4.41
3220 3466 3.181487 ACACTGTTTCCTGACATGTTTGC 60.181 43.478 0.00 0.00 0.00 3.68
3221 3467 4.498009 GGACACTGTTTCCTGACATGTTTG 60.498 45.833 0.00 0.00 0.00 2.93
3222 3468 3.632145 GGACACTGTTTCCTGACATGTTT 59.368 43.478 0.00 0.00 0.00 2.83
3233 3479 2.031683 CGTTCCACAAGGACACTGTTTC 59.968 50.000 0.00 0.00 45.73 2.78
3235 3481 1.208535 TCGTTCCACAAGGACACTGTT 59.791 47.619 0.00 0.00 45.73 3.16
3281 3531 5.391950 CCATAAACACACACTGAGTAATGCC 60.392 44.000 0.00 0.00 0.00 4.40
3292 3542 5.183140 ACCTAGAATTGCCATAAACACACAC 59.817 40.000 0.00 0.00 0.00 3.82
3318 3568 0.895559 TCTGCTCGTTCCAGCTCTGA 60.896 55.000 0.00 0.00 40.39 3.27
3323 3573 1.446966 GGTCTCTGCTCGTTCCAGC 60.447 63.158 0.00 0.00 40.13 4.85
3331 3581 1.135344 GGTTAGACACGGTCTCTGCTC 60.135 57.143 9.44 0.08 42.40 4.26
3332 3582 0.889306 GGTTAGACACGGTCTCTGCT 59.111 55.000 9.44 0.00 42.40 4.24
3334 3584 2.609737 GGTTGGTTAGACACGGTCTCTG 60.610 54.545 9.44 0.00 42.40 3.35
3336 3586 1.337541 GGGTTGGTTAGACACGGTCTC 60.338 57.143 9.44 0.00 42.40 3.36
3339 3589 0.107268 GTGGGTTGGTTAGACACGGT 59.893 55.000 0.00 0.00 0.00 4.83
3340 3590 2.922779 GTGGGTTGGTTAGACACGG 58.077 57.895 0.00 0.00 0.00 4.94
3341 3591 2.524300 CGTGGGTTGGTTAGACACG 58.476 57.895 0.00 0.00 46.82 4.49
3345 3597 1.302192 GCAGCGTGGGTTGGTTAGA 60.302 57.895 0.00 0.00 0.00 2.10
3375 3627 0.994995 CAGCATCACCTTCTCGTTCG 59.005 55.000 0.00 0.00 0.00 3.95
3383 3635 1.630369 TCTTGTAGCCAGCATCACCTT 59.370 47.619 0.00 0.00 0.00 3.50
3396 3648 2.159043 ACCACATCTCCGCATCTTGTAG 60.159 50.000 0.00 0.00 0.00 2.74
3402 3654 0.531532 CTGGACCACATCTCCGCATC 60.532 60.000 0.00 0.00 0.00 3.91
3404 3656 2.659063 CCTGGACCACATCTCCGCA 61.659 63.158 0.00 0.00 0.00 5.69
3407 3659 1.267574 TGCTCCTGGACCACATCTCC 61.268 60.000 0.00 0.00 0.00 3.71
3409 3661 1.270414 CCTGCTCCTGGACCACATCT 61.270 60.000 0.00 0.00 0.00 2.90
3411 3663 2.976490 GCCTGCTCCTGGACCACAT 61.976 63.158 0.00 0.00 0.00 3.21
3428 3680 1.200716 TGCACACGTACTAGTACTGGC 59.799 52.381 26.36 23.48 34.04 4.85
3429 3681 2.731341 GCTGCACACGTACTAGTACTGG 60.731 54.545 26.36 20.45 34.04 4.00
3430 3682 2.516923 GCTGCACACGTACTAGTACTG 58.483 52.381 26.36 23.43 34.04 2.74
3438 3690 1.876453 CTGTGACGCTGCACACGTAC 61.876 60.000 17.43 9.15 45.24 3.67
3439 3691 1.660264 CTGTGACGCTGCACACGTA 60.660 57.895 17.43 5.21 45.24 3.57
3441 3693 2.961721 ACTGTGACGCTGCACACG 60.962 61.111 17.43 14.85 43.35 4.49
3442 3694 1.882625 TCACTGTGACGCTGCACAC 60.883 57.895 6.36 16.33 43.35 3.82
3443 3695 1.882625 GTCACTGTGACGCTGCACA 60.883 57.895 23.54 8.03 45.80 4.57
3461 3713 1.141881 CTTCGGGTGAGACGATGGG 59.858 63.158 0.00 0.00 40.38 4.00
3462 3714 0.179134 GTCTTCGGGTGAGACGATGG 60.179 60.000 0.00 0.00 40.38 3.51
3463 3715 3.330766 GTCTTCGGGTGAGACGATG 57.669 57.895 0.00 0.00 40.38 3.84
3482 3748 1.598130 GATAGCATGTCCGGTGCCC 60.598 63.158 11.61 0.00 43.50 5.36
3484 3750 0.104855 TGAGATAGCATGTCCGGTGC 59.895 55.000 7.42 7.42 42.81 5.01
3546 3816 5.651576 GCTCTCCCTTCTTGAATTGAATCTT 59.348 40.000 0.00 0.00 0.00 2.40
3552 3822 4.335874 CAGATGCTCTCCCTTCTTGAATTG 59.664 45.833 0.00 0.00 0.00 2.32
3553 3823 4.525024 CAGATGCTCTCCCTTCTTGAATT 58.475 43.478 0.00 0.00 0.00 2.17
3554 3824 3.684981 GCAGATGCTCTCCCTTCTTGAAT 60.685 47.826 0.00 0.00 38.21 2.57
3555 3825 2.355513 GCAGATGCTCTCCCTTCTTGAA 60.356 50.000 0.00 0.00 38.21 2.69
3556 3826 1.209019 GCAGATGCTCTCCCTTCTTGA 59.791 52.381 0.00 0.00 38.21 3.02
3557 3827 1.065636 TGCAGATGCTCTCCCTTCTTG 60.066 52.381 6.35 0.00 42.66 3.02
3558 3828 1.209990 CTGCAGATGCTCTCCCTTCTT 59.790 52.381 8.42 0.00 42.66 2.52
3559 3829 0.831966 CTGCAGATGCTCTCCCTTCT 59.168 55.000 8.42 0.00 42.66 2.85
3560 3830 0.179051 CCTGCAGATGCTCTCCCTTC 60.179 60.000 17.39 0.00 42.66 3.46
3561 3831 1.913722 CCTGCAGATGCTCTCCCTT 59.086 57.895 17.39 0.00 42.66 3.95
3562 3832 2.744243 GCCTGCAGATGCTCTCCCT 61.744 63.158 17.39 0.00 42.66 4.20
3563 3833 2.203181 GCCTGCAGATGCTCTCCC 60.203 66.667 17.39 0.00 42.66 4.30
3564 3834 1.524165 CTGCCTGCAGATGCTCTCC 60.524 63.158 17.39 0.00 46.30 3.71
3565 3835 1.521141 TCTGCCTGCAGATGCTCTC 59.479 57.895 17.39 0.00 46.80 3.20
3566 3836 3.723245 TCTGCCTGCAGATGCTCT 58.277 55.556 17.39 0.00 46.80 4.09
3573 3843 1.689813 AGATCAGATCTCTGCCTGCAG 59.310 52.381 12.91 12.91 43.46 4.41
3574 3844 1.413077 CAGATCAGATCTCTGCCTGCA 59.587 52.381 10.25 0.00 43.46 4.41
3575 3845 1.687660 TCAGATCAGATCTCTGCCTGC 59.312 52.381 10.25 3.81 43.46 4.85
3576 3846 4.182693 GATCAGATCAGATCTCTGCCTG 57.817 50.000 18.19 16.51 43.46 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.