Multiple sequence alignment - TraesCS3D01G378200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G378200 chr3D 100.000 4481 0 0 1 4481 495324428 495319948 0.000000e+00 8275.0
1 TraesCS3D01G378200 chr3D 92.405 158 12 0 4 161 436020233 436020076 4.510000e-55 226.0
2 TraesCS3D01G378200 chr3D 80.769 234 34 10 267 491 495328800 495328569 5.960000e-39 172.0
3 TraesCS3D01G378200 chr3D 79.297 256 31 14 260 503 100225675 100225430 4.640000e-35 159.0
4 TraesCS3D01G378200 chr3D 94.231 52 1 2 1352 1402 495322897 495322847 1.340000e-10 78.7
5 TraesCS3D01G378200 chr3D 94.231 52 1 2 1532 1582 495323077 495323027 1.340000e-10 78.7
6 TraesCS3D01G378200 chr3B 95.468 3023 110 12 1436 4453 654358024 654355024 0.000000e+00 4798.0
7 TraesCS3D01G378200 chr3B 93.957 1059 46 7 3400 4453 654346675 654345630 0.000000e+00 1585.0
8 TraesCS3D01G378200 chr3B 93.534 897 37 13 421 1303 654359076 654358187 0.000000e+00 1315.0
9 TraesCS3D01G378200 chr3B 92.126 254 17 2 166 419 654364690 654364440 5.510000e-94 355.0
10 TraesCS3D01G378200 chr3B 92.411 224 8 5 1231 1454 654358193 654357979 1.210000e-80 311.0
11 TraesCS3D01G378200 chr3B 87.200 250 22 6 3783 4028 400325362 400325119 4.420000e-70 276.0
12 TraesCS3D01G378200 chr3B 92.308 52 2 2 1352 1402 654357937 654357887 6.220000e-09 73.1
13 TraesCS3D01G378200 chr3B 92.157 51 4 0 1532 1582 654358081 654358031 6.220000e-09 73.1
14 TraesCS3D01G378200 chr4D 89.096 3164 259 42 562 3696 450137369 450140475 0.000000e+00 3853.0
15 TraesCS3D01G378200 chr4D 92.157 51 4 0 1532 1582 450138146 450138196 6.220000e-09 73.1
16 TraesCS3D01G378200 chr4B 88.397 3163 285 38 562 3696 562879855 562882963 0.000000e+00 3733.0
17 TraesCS3D01G378200 chr4B 90.196 51 5 0 1532 1582 562880635 562880685 2.890000e-07 67.6
18 TraesCS3D01G378200 chr4A 88.565 3052 251 43 700 3696 16512772 16509764 0.000000e+00 3613.0
19 TraesCS3D01G378200 chr3A 96.691 1783 40 9 1257 3038 634726060 634724296 0.000000e+00 2948.0
20 TraesCS3D01G378200 chr3A 95.147 1051 34 5 3036 4083 634712540 634711504 0.000000e+00 1642.0
21 TraesCS3D01G378200 chr3A 90.939 309 17 1 4152 4449 634711503 634711195 5.400000e-109 405.0
22 TraesCS3D01G378200 chr3A 86.885 61 6 2 1352 1411 634725803 634725744 2.890000e-07 67.6
23 TraesCS3D01G378200 chr6D 87.778 270 26 7 3770 4035 304115823 304115557 4.350000e-80 309.0
24 TraesCS3D01G378200 chr2B 88.235 255 24 5 3780 4029 457345822 457346075 2.620000e-77 300.0
25 TraesCS3D01G378200 chr2A 87.402 254 27 5 3780 4029 522492942 522493194 2.040000e-73 287.0
26 TraesCS3D01G378200 chr2A 90.798 163 11 4 4 163 117393049 117393210 9.760000e-52 215.0
27 TraesCS3D01G378200 chr2A 90.184 163 16 0 4 166 158882413 158882251 3.510000e-51 213.0
28 TraesCS3D01G378200 chr6A 87.045 247 27 4 3789 4032 412366496 412366252 1.590000e-69 274.0
29 TraesCS3D01G378200 chr7A 86.166 253 27 7 3783 4031 263716224 263716472 2.660000e-67 267.0
30 TraesCS3D01G378200 chr7A 97.297 74 2 0 258 331 375875896 375875823 4.710000e-25 126.0
31 TraesCS3D01G378200 chr7A 79.114 158 22 9 258 406 375877332 375877177 1.030000e-16 99.0
32 TraesCS3D01G378200 chr7B 94.375 160 8 1 4 163 576660204 576660046 1.250000e-60 244.0
33 TraesCS3D01G378200 chr7B 95.946 74 3 0 258 331 296321530 296321457 2.190000e-23 121.0
34 TraesCS3D01G378200 chr7B 89.189 74 8 0 258 331 296323624 296323551 4.770000e-15 93.5
35 TraesCS3D01G378200 chr2D 91.018 167 14 1 4 170 128025928 128025763 1.620000e-54 224.0
36 TraesCS3D01G378200 chr2D 91.304 161 13 1 4 163 317234564 317234724 7.550000e-53 219.0
37 TraesCS3D01G378200 chr1B 91.875 160 13 0 4 163 242744436 242744595 1.620000e-54 224.0
38 TraesCS3D01G378200 chr5B 90.184 163 16 0 1 163 33712052 33712214 3.510000e-51 213.0
39 TraesCS3D01G378200 chr5A 86.170 188 24 2 4 189 218605991 218605804 7.600000e-48 202.0
40 TraesCS3D01G378200 chr7D 98.649 74 1 0 258 331 311893821 311893894 1.010000e-26 132.0
41 TraesCS3D01G378200 chr7D 84.211 95 15 0 237 331 311892377 311892471 4.770000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G378200 chr3D 495319948 495324428 4480 True 2810.80 8275 96.1540 1 4481 3 chr3D.!!$R4 4480
1 TraesCS3D01G378200 chr3B 654345630 654346675 1045 True 1585.00 1585 93.9570 3400 4453 1 chr3B.!!$R2 1053
2 TraesCS3D01G378200 chr3B 654355024 654359076 4052 True 1314.04 4798 93.1756 421 4453 5 chr3B.!!$R4 4032
3 TraesCS3D01G378200 chr4D 450137369 450140475 3106 False 1963.05 3853 90.6265 562 3696 2 chr4D.!!$F1 3134
4 TraesCS3D01G378200 chr4B 562879855 562882963 3108 False 1900.30 3733 89.2965 562 3696 2 chr4B.!!$F1 3134
5 TraesCS3D01G378200 chr4A 16509764 16512772 3008 True 3613.00 3613 88.5650 700 3696 1 chr4A.!!$R1 2996
6 TraesCS3D01G378200 chr3A 634724296 634726060 1764 True 1507.80 2948 91.7880 1257 3038 2 chr3A.!!$R2 1781
7 TraesCS3D01G378200 chr3A 634711195 634712540 1345 True 1023.50 1642 93.0430 3036 4449 2 chr3A.!!$R1 1413

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
203 204 0.039618 TGAAGGGGGAGAAATGCCAC 59.960 55.0 0.00 0.0 0.00 5.01 F
204 205 0.039618 GAAGGGGGAGAAATGCCACA 59.960 55.0 0.00 0.0 0.00 4.17 F
239 240 0.179045 CCCAGCCGGATAGGTCTTTG 60.179 60.0 5.05 0.0 43.70 2.77 F
240 241 0.541863 CCAGCCGGATAGGTCTTTGT 59.458 55.0 5.05 0.0 43.70 2.83 F
1189 1206 0.613853 TGGAGGTACCGAACTGGGAG 60.614 60.0 6.18 0.0 44.64 4.30 F
1485 1607 0.391793 CTTCAGTTCCTTCCGCTCCC 60.392 60.0 0.00 0.0 0.00 4.30 F
2211 2348 1.055040 AGAGCATGGCAGGGATAGAC 58.945 55.0 0.00 0.0 0.00 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1199 1216 0.111061 TGCAGAGGTTGGCAGAACAT 59.889 50.000 0.0 0.0 34.58 2.71 R
1442 1528 1.272092 CCAAATGAACTGGAGGAGCCA 60.272 52.381 0.0 0.0 46.96 4.75 R
1478 1600 1.345715 ATTACCTTCTGGGGGAGCGG 61.346 60.000 0.0 0.0 40.03 5.52 R
1479 1601 1.420430 TATTACCTTCTGGGGGAGCG 58.580 55.000 0.0 0.0 40.03 5.03 R
3072 3213 0.094216 CGTCTTCTGCATCAACAGCG 59.906 55.000 0.0 0.0 37.59 5.18 R
3151 3292 2.308690 AGGACTAGATTCGCCCAGTAC 58.691 52.381 0.0 0.0 0.00 2.73 R
3941 4113 0.828022 TTATGTTCGCCGAGGATGGT 59.172 50.000 0.0 0.0 0.00 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 8.601845 AAAAATAAGCCGCTCTTAAAAATTGT 57.398 26.923 0.00 0.00 40.38 2.71
42 43 8.601845 AAAATAAGCCGCTCTTAAAAATTGTT 57.398 26.923 0.00 0.00 40.38 2.83
43 44 7.581011 AATAAGCCGCTCTTAAAAATTGTTG 57.419 32.000 0.00 0.00 40.38 3.33
44 45 4.846779 AGCCGCTCTTAAAAATTGTTGA 57.153 36.364 0.00 0.00 0.00 3.18
45 46 4.798574 AGCCGCTCTTAAAAATTGTTGAG 58.201 39.130 0.00 0.00 0.00 3.02
46 47 3.920412 GCCGCTCTTAAAAATTGTTGAGG 59.080 43.478 0.62 0.00 0.00 3.86
47 48 3.920412 CCGCTCTTAAAAATTGTTGAGGC 59.080 43.478 0.62 2.88 0.00 4.70
48 49 4.321230 CCGCTCTTAAAAATTGTTGAGGCT 60.321 41.667 0.62 0.00 0.00 4.58
49 50 5.222631 CGCTCTTAAAAATTGTTGAGGCTT 58.777 37.500 0.62 0.00 0.00 4.35
50 51 5.343325 CGCTCTTAAAAATTGTTGAGGCTTC 59.657 40.000 0.62 0.00 0.00 3.86
51 52 6.450545 GCTCTTAAAAATTGTTGAGGCTTCT 58.549 36.000 0.62 0.00 0.00 2.85
52 53 7.573096 CGCTCTTAAAAATTGTTGAGGCTTCTA 60.573 37.037 0.62 0.00 0.00 2.10
53 54 8.082242 GCTCTTAAAAATTGTTGAGGCTTCTAA 58.918 33.333 0.62 0.00 0.00 2.10
54 55 9.965824 CTCTTAAAAATTGTTGAGGCTTCTAAA 57.034 29.630 0.62 0.00 0.00 1.85
65 66 9.609346 TGTTGAGGCTTCTAAATTAGTTATACC 57.391 33.333 0.00 0.00 0.00 2.73
66 67 9.609346 GTTGAGGCTTCTAAATTAGTTATACCA 57.391 33.333 0.00 0.00 0.00 3.25
83 84 8.422566 AGTTATACCATAACTAGTTCAGAAGCC 58.577 37.037 12.39 0.00 36.14 4.35
84 85 4.489306 ACCATAACTAGTTCAGAAGCCC 57.511 45.455 12.39 0.00 0.00 5.19
85 86 3.200165 ACCATAACTAGTTCAGAAGCCCC 59.800 47.826 12.39 0.00 0.00 5.80
86 87 3.199946 CCATAACTAGTTCAGAAGCCCCA 59.800 47.826 12.39 0.00 0.00 4.96
87 88 4.324254 CCATAACTAGTTCAGAAGCCCCAA 60.324 45.833 12.39 0.00 0.00 4.12
88 89 5.440610 CATAACTAGTTCAGAAGCCCCAAT 58.559 41.667 12.39 0.00 0.00 3.16
89 90 6.409234 CCATAACTAGTTCAGAAGCCCCAATA 60.409 42.308 12.39 0.00 0.00 1.90
90 91 5.514500 AACTAGTTCAGAAGCCCCAATAA 57.486 39.130 1.12 0.00 0.00 1.40
91 92 5.514500 ACTAGTTCAGAAGCCCCAATAAA 57.486 39.130 0.00 0.00 0.00 1.40
92 93 6.079712 ACTAGTTCAGAAGCCCCAATAAAT 57.920 37.500 0.00 0.00 0.00 1.40
93 94 7.208064 ACTAGTTCAGAAGCCCCAATAAATA 57.792 36.000 0.00 0.00 0.00 1.40
94 95 7.639378 ACTAGTTCAGAAGCCCCAATAAATAA 58.361 34.615 0.00 0.00 0.00 1.40
95 96 7.775561 ACTAGTTCAGAAGCCCCAATAAATAAG 59.224 37.037 0.00 0.00 0.00 1.73
96 97 5.360999 AGTTCAGAAGCCCCAATAAATAAGC 59.639 40.000 0.00 0.00 0.00 3.09
97 98 3.882888 TCAGAAGCCCCAATAAATAAGCG 59.117 43.478 0.00 0.00 0.00 4.68
98 99 3.882888 CAGAAGCCCCAATAAATAAGCGA 59.117 43.478 0.00 0.00 0.00 4.93
99 100 4.023707 CAGAAGCCCCAATAAATAAGCGAG 60.024 45.833 0.00 0.00 0.00 5.03
100 101 2.863809 AGCCCCAATAAATAAGCGAGG 58.136 47.619 0.00 0.00 0.00 4.63
101 102 1.269723 GCCCCAATAAATAAGCGAGGC 59.730 52.381 0.00 0.00 0.00 4.70
102 103 1.535462 CCCCAATAAATAAGCGAGGCG 59.465 52.381 0.00 0.00 0.00 5.52
103 104 1.535462 CCCAATAAATAAGCGAGGCGG 59.465 52.381 0.00 0.00 0.00 6.13
104 105 1.069227 CCAATAAATAAGCGAGGCGGC 60.069 52.381 0.00 0.00 0.00 6.53
105 106 1.069227 CAATAAATAAGCGAGGCGGCC 60.069 52.381 12.11 12.11 0.00 6.13
106 107 0.396811 ATAAATAAGCGAGGCGGCCT 59.603 50.000 24.13 24.13 36.03 5.19
107 108 1.042229 TAAATAAGCGAGGCGGCCTA 58.958 50.000 23.92 6.14 31.76 3.93
108 109 0.396811 AAATAAGCGAGGCGGCCTAT 59.603 50.000 23.92 8.63 31.76 2.57
109 110 0.320771 AATAAGCGAGGCGGCCTATG 60.321 55.000 23.92 18.49 31.76 2.23
110 111 2.172483 ATAAGCGAGGCGGCCTATGG 62.172 60.000 23.92 15.25 31.76 2.74
112 113 4.235762 GCGAGGCGGCCTATGGAA 62.236 66.667 23.92 0.00 31.76 3.53
113 114 2.504032 CGAGGCGGCCTATGGAAA 59.496 61.111 23.92 0.00 31.76 3.13
114 115 1.153249 CGAGGCGGCCTATGGAAAA 60.153 57.895 23.92 0.00 31.76 2.29
115 116 0.746563 CGAGGCGGCCTATGGAAAAA 60.747 55.000 23.92 0.00 31.76 1.94
116 117 1.025041 GAGGCGGCCTATGGAAAAAG 58.975 55.000 23.92 0.00 31.76 2.27
117 118 1.037579 AGGCGGCCTATGGAAAAAGC 61.038 55.000 22.47 0.00 28.47 3.51
118 119 1.037579 GGCGGCCTATGGAAAAAGCT 61.038 55.000 12.87 0.00 0.00 3.74
119 120 0.101219 GCGGCCTATGGAAAAAGCTG 59.899 55.000 0.00 0.00 0.00 4.24
120 121 0.740737 CGGCCTATGGAAAAAGCTGG 59.259 55.000 0.00 0.00 0.00 4.85
121 122 1.114627 GGCCTATGGAAAAAGCTGGG 58.885 55.000 0.00 0.00 0.00 4.45
122 123 1.114627 GCCTATGGAAAAAGCTGGGG 58.885 55.000 0.00 0.00 0.00 4.96
123 124 1.341976 GCCTATGGAAAAAGCTGGGGA 60.342 52.381 0.00 0.00 0.00 4.81
124 125 2.659428 CCTATGGAAAAAGCTGGGGAG 58.341 52.381 0.00 0.00 0.00 4.30
125 126 2.659428 CTATGGAAAAAGCTGGGGAGG 58.341 52.381 0.00 0.00 0.00 4.30
126 127 1.084018 ATGGAAAAAGCTGGGGAGGA 58.916 50.000 0.00 0.00 0.00 3.71
127 128 0.405585 TGGAAAAAGCTGGGGAGGAG 59.594 55.000 0.00 0.00 0.00 3.69
128 129 0.323816 GGAAAAAGCTGGGGAGGAGG 60.324 60.000 0.00 0.00 0.00 4.30
129 130 0.967887 GAAAAAGCTGGGGAGGAGGC 60.968 60.000 0.00 0.00 0.00 4.70
130 131 2.771328 AAAAAGCTGGGGAGGAGGCG 62.771 60.000 0.00 0.00 0.00 5.52
135 136 4.408396 TGGGGAGGAGGCGGCTTA 62.408 66.667 14.76 0.00 0.00 3.09
136 137 2.849646 GGGGAGGAGGCGGCTTAT 60.850 66.667 14.76 4.47 0.00 1.73
137 138 2.452937 GGGGAGGAGGCGGCTTATT 61.453 63.158 14.76 1.09 0.00 1.40
138 139 1.532238 GGGAGGAGGCGGCTTATTT 59.468 57.895 14.76 0.00 0.00 1.40
139 140 0.106669 GGGAGGAGGCGGCTTATTTT 60.107 55.000 14.76 0.00 0.00 1.82
140 141 1.685180 GGGAGGAGGCGGCTTATTTTT 60.685 52.381 14.76 0.00 0.00 1.94
141 142 1.676529 GGAGGAGGCGGCTTATTTTTC 59.323 52.381 14.76 4.98 0.00 2.29
142 143 2.365582 GAGGAGGCGGCTTATTTTTCA 58.634 47.619 14.76 0.00 0.00 2.69
143 144 2.752903 GAGGAGGCGGCTTATTTTTCAA 59.247 45.455 14.76 0.00 0.00 2.69
144 145 2.755103 AGGAGGCGGCTTATTTTTCAAG 59.245 45.455 14.76 0.00 0.00 3.02
145 146 2.530177 GAGGCGGCTTATTTTTCAAGC 58.470 47.619 14.76 0.00 46.18 4.01
150 151 2.362169 GCTTATTTTTCAAGCCGCCA 57.638 45.000 0.00 0.00 42.08 5.69
151 152 2.682836 GCTTATTTTTCAAGCCGCCAA 58.317 42.857 0.00 0.00 42.08 4.52
152 153 3.063485 GCTTATTTTTCAAGCCGCCAAA 58.937 40.909 0.00 0.00 42.08 3.28
153 154 3.496507 GCTTATTTTTCAAGCCGCCAAAA 59.503 39.130 0.00 0.00 42.08 2.44
154 155 4.377328 GCTTATTTTTCAAGCCGCCAAAAG 60.377 41.667 0.00 0.00 42.08 2.27
155 156 2.969628 TTTTTCAAGCCGCCAAAAGA 57.030 40.000 0.00 0.00 0.00 2.52
156 157 2.969628 TTTTCAAGCCGCCAAAAGAA 57.030 40.000 0.00 0.00 0.00 2.52
157 158 2.217429 TTTCAAGCCGCCAAAAGAAC 57.783 45.000 0.00 0.00 0.00 3.01
158 159 1.398692 TTCAAGCCGCCAAAAGAACT 58.601 45.000 0.00 0.00 0.00 3.01
159 160 0.667993 TCAAGCCGCCAAAAGAACTG 59.332 50.000 0.00 0.00 0.00 3.16
160 161 0.318955 CAAGCCGCCAAAAGAACTGG 60.319 55.000 0.00 0.00 36.99 4.00
169 170 4.806640 CCAAAAGAACTGGCCATGTATT 57.193 40.909 5.51 0.00 0.00 1.89
170 171 4.747810 CCAAAAGAACTGGCCATGTATTC 58.252 43.478 5.51 8.48 0.00 1.75
171 172 4.381932 CCAAAAGAACTGGCCATGTATTCC 60.382 45.833 5.51 0.00 0.00 3.01
172 173 4.322057 AAAGAACTGGCCATGTATTCCT 57.678 40.909 5.51 0.00 0.00 3.36
173 174 3.287867 AGAACTGGCCATGTATTCCTG 57.712 47.619 5.51 0.00 0.00 3.86
174 175 2.092212 AGAACTGGCCATGTATTCCTGG 60.092 50.000 5.51 0.00 35.53 4.45
175 176 0.552848 ACTGGCCATGTATTCCTGGG 59.447 55.000 5.51 0.00 32.90 4.45
178 179 2.724520 GCCATGTATTCCTGGGCTG 58.275 57.895 0.00 0.00 41.39 4.85
179 180 1.458639 GCCATGTATTCCTGGGCTGC 61.459 60.000 0.00 0.00 41.39 5.25
180 181 0.184451 CCATGTATTCCTGGGCTGCT 59.816 55.000 0.00 0.00 0.00 4.24
181 182 1.410648 CCATGTATTCCTGGGCTGCTT 60.411 52.381 0.00 0.00 0.00 3.91
182 183 1.679680 CATGTATTCCTGGGCTGCTTG 59.320 52.381 0.00 0.00 0.00 4.01
183 184 0.698238 TGTATTCCTGGGCTGCTTGT 59.302 50.000 0.00 0.00 0.00 3.16
184 185 1.075374 TGTATTCCTGGGCTGCTTGTT 59.925 47.619 0.00 0.00 0.00 2.83
185 186 1.474077 GTATTCCTGGGCTGCTTGTTG 59.526 52.381 0.00 0.00 0.00 3.33
186 187 0.112995 ATTCCTGGGCTGCTTGTTGA 59.887 50.000 0.00 0.00 0.00 3.18
187 188 0.106268 TTCCTGGGCTGCTTGTTGAA 60.106 50.000 0.00 0.00 0.00 2.69
188 189 0.538057 TCCTGGGCTGCTTGTTGAAG 60.538 55.000 0.00 0.00 0.00 3.02
189 190 1.530013 CCTGGGCTGCTTGTTGAAGG 61.530 60.000 0.00 0.00 0.00 3.46
190 191 1.530013 CTGGGCTGCTTGTTGAAGGG 61.530 60.000 0.00 0.00 0.00 3.95
191 192 2.278330 GGGCTGCTTGTTGAAGGGG 61.278 63.158 0.00 0.00 0.00 4.79
192 193 2.278330 GGCTGCTTGTTGAAGGGGG 61.278 63.158 0.00 0.00 0.00 5.40
193 194 1.228552 GCTGCTTGTTGAAGGGGGA 60.229 57.895 0.00 0.00 0.00 4.81
194 195 1.246737 GCTGCTTGTTGAAGGGGGAG 61.247 60.000 0.00 0.00 0.00 4.30
195 196 0.401738 CTGCTTGTTGAAGGGGGAGA 59.598 55.000 0.00 0.00 0.00 3.71
196 197 0.850100 TGCTTGTTGAAGGGGGAGAA 59.150 50.000 0.00 0.00 0.00 2.87
197 198 1.216678 TGCTTGTTGAAGGGGGAGAAA 59.783 47.619 0.00 0.00 0.00 2.52
198 199 2.158325 TGCTTGTTGAAGGGGGAGAAAT 60.158 45.455 0.00 0.00 0.00 2.17
199 200 2.232208 GCTTGTTGAAGGGGGAGAAATG 59.768 50.000 0.00 0.00 0.00 2.32
200 201 1.923356 TGTTGAAGGGGGAGAAATGC 58.077 50.000 0.00 0.00 0.00 3.56
201 202 1.186200 GTTGAAGGGGGAGAAATGCC 58.814 55.000 0.00 0.00 0.00 4.40
202 203 0.783206 TTGAAGGGGGAGAAATGCCA 59.217 50.000 0.00 0.00 0.00 4.92
203 204 0.039618 TGAAGGGGGAGAAATGCCAC 59.960 55.000 0.00 0.00 0.00 5.01
204 205 0.039618 GAAGGGGGAGAAATGCCACA 59.960 55.000 0.00 0.00 0.00 4.17
205 206 0.251787 AAGGGGGAGAAATGCCACAC 60.252 55.000 0.00 0.00 0.00 3.82
206 207 1.682344 GGGGGAGAAATGCCACACC 60.682 63.158 0.00 0.00 0.00 4.16
207 208 1.076549 GGGGAGAAATGCCACACCA 59.923 57.895 0.00 0.00 0.00 4.17
208 209 0.324645 GGGGAGAAATGCCACACCAT 60.325 55.000 0.00 0.00 0.00 3.55
209 210 0.819582 GGGAGAAATGCCACACCATG 59.180 55.000 0.00 0.00 0.00 3.66
232 233 3.142393 CTGGACCCAGCCGGATAG 58.858 66.667 5.05 0.00 37.24 2.08
233 234 2.445845 TGGACCCAGCCGGATAGG 60.446 66.667 5.05 3.04 44.97 2.57
234 235 2.446036 GGACCCAGCCGGATAGGT 60.446 66.667 10.39 10.39 43.70 3.08
235 236 2.508751 GGACCCAGCCGGATAGGTC 61.509 68.421 26.72 26.72 46.65 3.85
236 237 1.457831 GACCCAGCCGGATAGGTCT 60.458 63.158 27.24 0.00 44.46 3.85
237 238 1.003051 ACCCAGCCGGATAGGTCTT 59.997 57.895 3.16 0.00 43.70 3.01
238 239 0.620700 ACCCAGCCGGATAGGTCTTT 60.621 55.000 3.16 0.00 43.70 2.52
239 240 0.179045 CCCAGCCGGATAGGTCTTTG 60.179 60.000 5.05 0.00 43.70 2.77
240 241 0.541863 CCAGCCGGATAGGTCTTTGT 59.458 55.000 5.05 0.00 43.70 2.83
241 242 1.065418 CCAGCCGGATAGGTCTTTGTT 60.065 52.381 5.05 0.00 43.70 2.83
242 243 2.009774 CAGCCGGATAGGTCTTTGTTG 58.990 52.381 5.05 0.00 43.70 3.33
243 244 1.628846 AGCCGGATAGGTCTTTGTTGT 59.371 47.619 5.05 0.00 43.70 3.32
244 245 2.039879 AGCCGGATAGGTCTTTGTTGTT 59.960 45.455 5.05 0.00 43.70 2.83
245 246 2.817844 GCCGGATAGGTCTTTGTTGTTT 59.182 45.455 5.05 0.00 43.70 2.83
246 247 3.254903 GCCGGATAGGTCTTTGTTGTTTT 59.745 43.478 5.05 0.00 43.70 2.43
247 248 4.615223 GCCGGATAGGTCTTTGTTGTTTTC 60.615 45.833 5.05 0.00 43.70 2.29
248 249 4.517453 CCGGATAGGTCTTTGTTGTTTTCA 59.483 41.667 0.00 0.00 34.51 2.69
249 250 5.009210 CCGGATAGGTCTTTGTTGTTTTCAA 59.991 40.000 0.00 0.00 34.56 2.69
250 251 6.460399 CCGGATAGGTCTTTGTTGTTTTCAAA 60.460 38.462 0.00 0.00 37.06 2.69
252 253 6.420903 GGATAGGTCTTTGTTGTTTTCAAAGC 59.579 38.462 11.86 8.18 46.27 3.51
253 254 4.503910 AGGTCTTTGTTGTTTTCAAAGCC 58.496 39.130 11.86 14.37 46.27 4.35
254 255 4.222810 AGGTCTTTGTTGTTTTCAAAGCCT 59.777 37.500 18.65 18.65 46.27 4.58
255 256 4.329801 GGTCTTTGTTGTTTTCAAAGCCTG 59.670 41.667 11.86 0.00 46.27 4.85
256 257 3.932089 TCTTTGTTGTTTTCAAAGCCTGC 59.068 39.130 11.86 0.00 46.27 4.85
257 258 3.608316 TTGTTGTTTTCAAAGCCTGCT 57.392 38.095 0.00 0.00 41.76 4.24
258 259 3.608316 TGTTGTTTTCAAAGCCTGCTT 57.392 38.095 0.00 0.00 41.76 3.91
259 260 4.727507 TGTTGTTTTCAAAGCCTGCTTA 57.272 36.364 4.57 0.00 41.76 3.09
260 261 4.681744 TGTTGTTTTCAAAGCCTGCTTAG 58.318 39.130 4.57 0.00 41.76 2.18
261 262 4.159506 TGTTGTTTTCAAAGCCTGCTTAGT 59.840 37.500 4.57 0.00 41.76 2.24
262 263 5.109210 GTTGTTTTCAAAGCCTGCTTAGTT 58.891 37.500 4.57 0.00 41.76 2.24
263 264 5.337578 TGTTTTCAAAGCCTGCTTAGTTT 57.662 34.783 4.57 0.00 34.84 2.66
264 265 5.108517 TGTTTTCAAAGCCTGCTTAGTTTG 58.891 37.500 4.57 0.00 34.84 2.93
265 266 4.320608 TTTCAAAGCCTGCTTAGTTTGG 57.679 40.909 4.57 0.00 34.84 3.28
266 267 2.944129 TCAAAGCCTGCTTAGTTTGGT 58.056 42.857 4.57 0.00 34.84 3.67
267 268 3.295973 TCAAAGCCTGCTTAGTTTGGTT 58.704 40.909 4.57 0.00 34.84 3.67
268 269 4.465886 TCAAAGCCTGCTTAGTTTGGTTA 58.534 39.130 4.57 0.00 34.84 2.85
269 270 4.518970 TCAAAGCCTGCTTAGTTTGGTTAG 59.481 41.667 4.57 0.00 34.84 2.34
270 271 3.790089 AGCCTGCTTAGTTTGGTTAGT 57.210 42.857 0.00 0.00 0.00 2.24
271 272 4.100279 AGCCTGCTTAGTTTGGTTAGTT 57.900 40.909 0.00 0.00 0.00 2.24
272 273 4.072839 AGCCTGCTTAGTTTGGTTAGTTC 58.927 43.478 0.00 0.00 0.00 3.01
273 274 3.818773 GCCTGCTTAGTTTGGTTAGTTCA 59.181 43.478 0.00 0.00 0.00 3.18
274 275 4.083271 GCCTGCTTAGTTTGGTTAGTTCAG 60.083 45.833 0.00 0.00 0.00 3.02
275 276 5.305585 CCTGCTTAGTTTGGTTAGTTCAGA 58.694 41.667 0.00 0.00 0.00 3.27
276 277 5.940470 CCTGCTTAGTTTGGTTAGTTCAGAT 59.060 40.000 0.00 0.00 0.00 2.90
277 278 6.431234 CCTGCTTAGTTTGGTTAGTTCAGATT 59.569 38.462 0.00 0.00 0.00 2.40
278 279 7.361286 CCTGCTTAGTTTGGTTAGTTCAGATTC 60.361 40.741 0.00 0.00 0.00 2.52
279 280 7.224297 TGCTTAGTTTGGTTAGTTCAGATTCT 58.776 34.615 0.00 0.00 0.00 2.40
280 281 7.173218 TGCTTAGTTTGGTTAGTTCAGATTCTG 59.827 37.037 7.38 7.38 0.00 3.02
281 282 7.173390 GCTTAGTTTGGTTAGTTCAGATTCTGT 59.827 37.037 13.23 0.00 32.61 3.41
282 283 8.974060 TTAGTTTGGTTAGTTCAGATTCTGTT 57.026 30.769 13.23 3.95 32.61 3.16
283 284 7.881775 AGTTTGGTTAGTTCAGATTCTGTTT 57.118 32.000 13.23 3.64 32.61 2.83
284 285 8.974060 AGTTTGGTTAGTTCAGATTCTGTTTA 57.026 30.769 13.23 2.78 32.61 2.01
285 286 9.057089 AGTTTGGTTAGTTCAGATTCTGTTTAG 57.943 33.333 13.23 0.00 32.61 1.85
286 287 9.052759 GTTTGGTTAGTTCAGATTCTGTTTAGA 57.947 33.333 13.23 0.00 32.61 2.10
287 288 9.793259 TTTGGTTAGTTCAGATTCTGTTTAGAT 57.207 29.630 13.23 0.00 31.81 1.98
288 289 9.436957 TTGGTTAGTTCAGATTCTGTTTAGATC 57.563 33.333 13.23 0.69 31.81 2.75
289 290 8.816894 TGGTTAGTTCAGATTCTGTTTAGATCT 58.183 33.333 13.23 0.00 31.81 2.75
290 291 9.660180 GGTTAGTTCAGATTCTGTTTAGATCTT 57.340 33.333 13.23 0.00 31.81 2.40
293 294 8.785329 AGTTCAGATTCTGTTTAGATCTTTCC 57.215 34.615 13.23 0.00 31.81 3.13
294 295 8.601546 AGTTCAGATTCTGTTTAGATCTTTCCT 58.398 33.333 13.23 0.00 31.81 3.36
295 296 9.225436 GTTCAGATTCTGTTTAGATCTTTCCTT 57.775 33.333 13.23 0.00 31.81 3.36
296 297 8.783833 TCAGATTCTGTTTAGATCTTTCCTTG 57.216 34.615 13.23 0.00 31.81 3.61
297 298 8.378565 TCAGATTCTGTTTAGATCTTTCCTTGT 58.621 33.333 13.23 0.00 31.81 3.16
298 299 9.007901 CAGATTCTGTTTAGATCTTTCCTTGTT 57.992 33.333 0.00 0.00 31.81 2.83
302 303 9.847224 TTCTGTTTAGATCTTTCCTTGTTAGTT 57.153 29.630 0.00 0.00 31.81 2.24
303 304 9.273016 TCTGTTTAGATCTTTCCTTGTTAGTTG 57.727 33.333 0.00 0.00 0.00 3.16
304 305 9.273016 CTGTTTAGATCTTTCCTTGTTAGTTGA 57.727 33.333 0.00 0.00 0.00 3.18
305 306 9.273016 TGTTTAGATCTTTCCTTGTTAGTTGAG 57.727 33.333 0.00 0.00 0.00 3.02
306 307 9.274206 GTTTAGATCTTTCCTTGTTAGTTGAGT 57.726 33.333 0.00 0.00 0.00 3.41
307 308 9.490379 TTTAGATCTTTCCTTGTTAGTTGAGTC 57.510 33.333 0.00 0.00 0.00 3.36
308 309 6.159988 AGATCTTTCCTTGTTAGTTGAGTCG 58.840 40.000 0.00 0.00 0.00 4.18
309 310 4.628074 TCTTTCCTTGTTAGTTGAGTCGG 58.372 43.478 0.00 0.00 0.00 4.79
310 311 4.100498 TCTTTCCTTGTTAGTTGAGTCGGT 59.900 41.667 0.00 0.00 0.00 4.69
311 312 4.411256 TTCCTTGTTAGTTGAGTCGGTT 57.589 40.909 0.00 0.00 0.00 4.44
312 313 3.986277 TCCTTGTTAGTTGAGTCGGTTC 58.014 45.455 0.00 0.00 0.00 3.62
313 314 3.385433 TCCTTGTTAGTTGAGTCGGTTCA 59.615 43.478 0.00 0.00 0.00 3.18
314 315 4.124238 CCTTGTTAGTTGAGTCGGTTCAA 58.876 43.478 0.00 0.00 34.83 2.69
315 316 4.211374 CCTTGTTAGTTGAGTCGGTTCAAG 59.789 45.833 3.27 0.00 37.72 3.02
316 317 4.395959 TGTTAGTTGAGTCGGTTCAAGT 57.604 40.909 12.58 12.58 42.03 3.16
317 318 4.365723 TGTTAGTTGAGTCGGTTCAAGTC 58.634 43.478 11.68 2.96 40.33 3.01
318 319 4.098960 TGTTAGTTGAGTCGGTTCAAGTCT 59.901 41.667 11.68 6.04 40.33 3.24
319 320 3.821421 AGTTGAGTCGGTTCAAGTCTT 57.179 42.857 3.27 0.00 36.27 3.01
320 321 4.138487 AGTTGAGTCGGTTCAAGTCTTT 57.862 40.909 3.27 0.00 36.27 2.52
321 322 4.120589 AGTTGAGTCGGTTCAAGTCTTTC 58.879 43.478 3.27 0.00 36.27 2.62
322 323 3.107642 TGAGTCGGTTCAAGTCTTTCC 57.892 47.619 0.00 0.00 0.00 3.13
323 324 2.698797 TGAGTCGGTTCAAGTCTTTCCT 59.301 45.455 0.00 0.00 0.00 3.36
324 325 3.893200 TGAGTCGGTTCAAGTCTTTCCTA 59.107 43.478 0.00 0.00 0.00 2.94
325 326 4.342951 TGAGTCGGTTCAAGTCTTTCCTAA 59.657 41.667 0.00 0.00 0.00 2.69
326 327 5.163385 TGAGTCGGTTCAAGTCTTTCCTAAA 60.163 40.000 0.00 0.00 0.00 1.85
327 328 5.055144 AGTCGGTTCAAGTCTTTCCTAAAC 58.945 41.667 0.00 0.00 0.00 2.01
328 329 5.055144 GTCGGTTCAAGTCTTTCCTAAACT 58.945 41.667 0.00 0.00 0.00 2.66
329 330 6.041296 AGTCGGTTCAAGTCTTTCCTAAACTA 59.959 38.462 0.00 0.00 0.00 2.24
330 331 6.145209 GTCGGTTCAAGTCTTTCCTAAACTAC 59.855 42.308 0.00 0.00 0.00 2.73
331 332 5.407691 CGGTTCAAGTCTTTCCTAAACTACC 59.592 44.000 0.00 0.00 0.00 3.18
332 333 6.293698 GGTTCAAGTCTTTCCTAAACTACCA 58.706 40.000 0.00 0.00 0.00 3.25
333 334 6.940867 GGTTCAAGTCTTTCCTAAACTACCAT 59.059 38.462 0.00 0.00 0.00 3.55
334 335 7.447545 GGTTCAAGTCTTTCCTAAACTACCATT 59.552 37.037 0.00 0.00 0.00 3.16
335 336 9.498176 GTTCAAGTCTTTCCTAAACTACCATTA 57.502 33.333 0.00 0.00 0.00 1.90
337 338 9.498176 TCAAGTCTTTCCTAAACTACCATTAAC 57.502 33.333 0.00 0.00 0.00 2.01
338 339 9.280174 CAAGTCTTTCCTAAACTACCATTAACA 57.720 33.333 0.00 0.00 0.00 2.41
355 356 7.538575 CCATTAACATATGGTAGGCAATTAGC 58.461 38.462 7.80 0.00 40.20 3.09
356 357 7.176515 CCATTAACATATGGTAGGCAATTAGCA 59.823 37.037 7.80 0.00 41.75 3.49
362 363 7.211897 ATATGGTAGGCAATTAGCATATGGA 57.788 36.000 18.18 3.20 45.69 3.41
363 364 7.819500 ATATGGTAGGCAATTAGCATATGGAT 58.180 34.615 18.18 4.77 45.69 3.41
364 365 8.284435 ATATGGTAGGCAATTAGCATATGGATT 58.716 33.333 18.18 3.85 45.69 3.01
369 370 5.972107 GCAATTAGCATATGGATTCAGGT 57.028 39.130 4.56 0.00 44.79 4.00
371 372 7.636150 GCAATTAGCATATGGATTCAGGTAT 57.364 36.000 4.56 0.00 44.79 2.73
372 373 7.701445 GCAATTAGCATATGGATTCAGGTATC 58.299 38.462 4.56 0.00 44.79 2.24
373 374 7.466455 GCAATTAGCATATGGATTCAGGTATCG 60.466 40.741 4.56 0.00 44.79 2.92
374 375 6.850752 TTAGCATATGGATTCAGGTATCGA 57.149 37.500 4.56 0.00 0.00 3.59
375 376 5.745312 AGCATATGGATTCAGGTATCGAA 57.255 39.130 4.56 0.00 0.00 3.71
376 377 5.728471 AGCATATGGATTCAGGTATCGAAG 58.272 41.667 4.56 0.00 0.00 3.79
377 378 5.481824 AGCATATGGATTCAGGTATCGAAGA 59.518 40.000 4.56 0.00 45.75 2.87
378 379 6.014242 AGCATATGGATTCAGGTATCGAAGAA 60.014 38.462 4.56 0.00 43.58 2.52
379 380 6.650807 GCATATGGATTCAGGTATCGAAGAAA 59.349 38.462 4.56 0.00 43.58 2.52
380 381 7.335422 GCATATGGATTCAGGTATCGAAGAAAT 59.665 37.037 4.56 0.00 43.58 2.17
381 382 9.875691 CATATGGATTCAGGTATCGAAGAAATA 57.124 33.333 0.00 0.00 43.58 1.40
384 385 8.433421 TGGATTCAGGTATCGAAGAAATAAAC 57.567 34.615 0.00 0.00 43.58 2.01
385 386 8.044309 TGGATTCAGGTATCGAAGAAATAAACA 58.956 33.333 0.00 0.00 43.58 2.83
386 387 8.552034 GGATTCAGGTATCGAAGAAATAAACAG 58.448 37.037 0.00 0.00 43.58 3.16
387 388 9.314321 GATTCAGGTATCGAAGAAATAAACAGA 57.686 33.333 0.00 0.00 43.58 3.41
388 389 8.703604 TTCAGGTATCGAAGAAATAAACAGAG 57.296 34.615 0.00 0.00 43.58 3.35
389 390 8.063200 TCAGGTATCGAAGAAATAAACAGAGA 57.937 34.615 0.00 0.00 43.58 3.10
390 391 8.528643 TCAGGTATCGAAGAAATAAACAGAGAA 58.471 33.333 0.00 0.00 43.58 2.87
391 392 9.151471 CAGGTATCGAAGAAATAAACAGAGAAA 57.849 33.333 0.00 0.00 43.58 2.52
392 393 9.720769 AGGTATCGAAGAAATAAACAGAGAAAA 57.279 29.630 0.00 0.00 43.58 2.29
393 394 9.974750 GGTATCGAAGAAATAAACAGAGAAAAG 57.025 33.333 0.00 0.00 43.58 2.27
394 395 9.479278 GTATCGAAGAAATAAACAGAGAAAAGC 57.521 33.333 0.00 0.00 43.58 3.51
395 396 7.490962 TCGAAGAAATAAACAGAGAAAAGCA 57.509 32.000 0.00 0.00 0.00 3.91
396 397 7.576236 TCGAAGAAATAAACAGAGAAAAGCAG 58.424 34.615 0.00 0.00 0.00 4.24
397 398 7.441157 TCGAAGAAATAAACAGAGAAAAGCAGA 59.559 33.333 0.00 0.00 0.00 4.26
398 399 7.743838 CGAAGAAATAAACAGAGAAAAGCAGAG 59.256 37.037 0.00 0.00 0.00 3.35
399 400 6.907741 AGAAATAAACAGAGAAAAGCAGAGC 58.092 36.000 0.00 0.00 0.00 4.09
400 401 6.714356 AGAAATAAACAGAGAAAAGCAGAGCT 59.286 34.615 0.00 0.00 42.56 4.09
411 412 1.944177 AGCAGAGCTTTACCTCCAGA 58.056 50.000 0.00 0.00 33.89 3.86
412 413 2.260822 AGCAGAGCTTTACCTCCAGAA 58.739 47.619 0.00 0.00 33.89 3.02
413 414 2.027653 AGCAGAGCTTTACCTCCAGAAC 60.028 50.000 0.00 0.00 33.89 3.01
414 415 2.289694 GCAGAGCTTTACCTCCAGAACA 60.290 50.000 0.00 0.00 32.17 3.18
415 416 3.594134 CAGAGCTTTACCTCCAGAACAG 58.406 50.000 0.00 0.00 32.17 3.16
416 417 3.259374 CAGAGCTTTACCTCCAGAACAGA 59.741 47.826 0.00 0.00 32.17 3.41
417 418 4.081198 CAGAGCTTTACCTCCAGAACAGAT 60.081 45.833 0.00 0.00 32.17 2.90
418 419 4.161377 AGAGCTTTACCTCCAGAACAGATC 59.839 45.833 0.00 0.00 32.17 2.75
419 420 4.100373 AGCTTTACCTCCAGAACAGATCT 58.900 43.478 0.00 0.00 39.68 2.75
481 491 3.782443 GCCCTCCTACCACCACGG 61.782 72.222 0.00 0.00 42.50 4.94
493 503 2.445845 CCACGGCTATCCCCTCCA 60.446 66.667 0.00 0.00 0.00 3.86
519 529 4.595781 ACCTAGGTCATGACACAACCTTTA 59.404 41.667 26.47 0.96 40.53 1.85
570 580 8.434589 AATTAGGAAAGAAAACAATCCCATGA 57.565 30.769 0.00 0.00 32.15 3.07
592 602 1.001378 AGCATTTTGTGTCGAACAGCC 60.001 47.619 0.00 0.00 40.74 4.85
679 689 4.318974 GGCACATTTAGCAAGCAAAGTTTG 60.319 41.667 11.41 11.41 0.00 2.93
708 718 7.801547 ATGCTTCATCTTTGTTTATTTGTCG 57.198 32.000 0.00 0.00 0.00 4.35
757 767 6.305877 GTCTTCTGTGTAGTAATCAGTGAACG 59.694 42.308 0.00 0.00 0.00 3.95
758 768 5.700722 TCTGTGTAGTAATCAGTGAACGT 57.299 39.130 0.00 0.00 0.00 3.99
876 890 5.725362 ACTTCTATACTCAAGGCACTGAAC 58.275 41.667 0.00 0.00 40.86 3.18
877 891 5.246203 ACTTCTATACTCAAGGCACTGAACA 59.754 40.000 0.00 0.00 40.86 3.18
942 957 4.075963 GTCTAGACCTGTAGACGAGGAT 57.924 50.000 12.13 0.00 39.61 3.24
966 983 2.200373 AGGAATTGCTGGCGTAAGTT 57.800 45.000 0.00 0.00 41.68 2.66
1065 1082 2.029964 GTCCTCGACGCCAAACCA 59.970 61.111 0.00 0.00 0.00 3.67
1159 1176 3.137544 AGTTGTCTGTGTCACCCCATTTA 59.862 43.478 0.00 0.00 0.00 1.40
1189 1206 0.613853 TGGAGGTACCGAACTGGGAG 60.614 60.000 6.18 0.00 44.64 4.30
1199 1216 1.768684 GAACTGGGAGTGCCTGGTGA 61.769 60.000 12.20 0.00 0.00 4.02
1236 1253 4.385405 GCACTGTCCGCTCCTGCT 62.385 66.667 0.00 0.00 36.97 4.24
1281 1364 7.041576 CCATATATGGTTCATATGAATGGAGCG 60.042 40.741 21.85 6.59 41.15 5.03
1382 1465 2.502130 CTGGTAAGAAGAAGAGGGGGAC 59.498 54.545 0.00 0.00 0.00 4.46
1423 1509 1.405821 CTACTGTTCCTACGGCTCCTG 59.594 57.143 0.00 0.00 33.73 3.86
1442 1528 4.019174 CCTGCAGTTCATTTGGTTCCTAT 58.981 43.478 13.81 0.00 0.00 2.57
1472 1594 3.891366 CCAGTTCATTTGGTTCCTTCAGT 59.109 43.478 0.00 0.00 0.00 3.41
1473 1595 4.342092 CCAGTTCATTTGGTTCCTTCAGTT 59.658 41.667 0.00 0.00 0.00 3.16
1474 1596 5.507985 CCAGTTCATTTGGTTCCTTCAGTTC 60.508 44.000 0.00 0.00 0.00 3.01
1475 1597 4.584743 AGTTCATTTGGTTCCTTCAGTTCC 59.415 41.667 0.00 0.00 0.00 3.62
1476 1598 4.453480 TCATTTGGTTCCTTCAGTTCCT 57.547 40.909 0.00 0.00 0.00 3.36
1477 1599 4.803452 TCATTTGGTTCCTTCAGTTCCTT 58.197 39.130 0.00 0.00 0.00 3.36
1478 1600 4.827284 TCATTTGGTTCCTTCAGTTCCTTC 59.173 41.667 0.00 0.00 0.00 3.46
1479 1601 2.951229 TGGTTCCTTCAGTTCCTTCC 57.049 50.000 0.00 0.00 0.00 3.46
1480 1602 1.071699 TGGTTCCTTCAGTTCCTTCCG 59.928 52.381 0.00 0.00 0.00 4.30
1485 1607 0.391793 CTTCAGTTCCTTCCGCTCCC 60.392 60.000 0.00 0.00 0.00 4.30
1502 1624 4.562963 CGCTCCCCCAGAAGGTAATAATAC 60.563 50.000 0.00 0.00 0.00 1.89
1626 1748 1.197264 GTGCCTATAGTAGACGGCGAG 59.803 57.143 16.62 0.00 45.36 5.03
1679 1801 6.818644 AGCGTACATGAATCTGTTACAAAGAT 59.181 34.615 0.00 0.00 35.89 2.40
1814 1942 1.078823 TGGTAAGAGGAAGAGAGGGCA 59.921 52.381 0.00 0.00 0.00 5.36
2211 2348 1.055040 AGAGCATGGCAGGGATAGAC 58.945 55.000 0.00 0.00 0.00 2.59
2487 2627 4.478206 TGGCCTTTACAAGATCAGAGAG 57.522 45.455 3.32 0.00 0.00 3.20
2947 3088 2.237416 CGGAACCGGGTTGTACAAC 58.763 57.895 27.20 27.20 40.45 3.32
3055 3196 7.886629 ACATTTATCTGTGAATATGCAGGTT 57.113 32.000 0.00 0.00 33.81 3.50
3072 3213 8.986477 ATGCAGGTTAAATTATTGACAAGAAC 57.014 30.769 0.00 0.00 0.00 3.01
3146 3287 4.433615 CACGTAAGATGGAACTATGCACT 58.566 43.478 0.00 0.00 43.62 4.40
3151 3292 6.638873 CGTAAGATGGAACTATGCACTAGAAG 59.361 42.308 0.00 0.00 43.02 2.85
3829 3999 0.960364 AGGCATGGCAAATCGAACGT 60.960 50.000 22.64 0.00 0.00 3.99
3941 4113 3.006940 CCATGCTCGCCAACTAAACTTA 58.993 45.455 0.00 0.00 0.00 2.24
3964 4136 3.303990 CCATCCTCGGCGAACATAATTTG 60.304 47.826 12.13 0.00 0.00 2.32
3986 4158 3.121113 GCCATGAAAAACGTTCGATTTGG 59.879 43.478 0.00 8.13 0.00 3.28
4008 4180 4.081476 GGCATGCCTAAAAATCTGAGGTTT 60.081 41.667 29.98 0.00 32.53 3.27
4211 4384 6.020916 CGCATGATTTTGAATTACTGAGCTTG 60.021 38.462 0.00 0.00 0.00 4.01
4280 4453 3.125316 CAACAACTGCTGGAACCATTTG 58.875 45.455 0.00 0.00 0.00 2.32
4285 4458 2.365293 ACTGCTGGAACCATTTGTTTCC 59.635 45.455 0.25 0.25 37.29 3.13
4308 4481 4.039730 CCATCCACCTGTAGATCCTGTTAG 59.960 50.000 0.00 0.00 0.00 2.34
4321 4494 9.509956 GTAGATCCTGTTAGATGTATGTCTAGT 57.490 37.037 0.00 0.00 32.63 2.57
4439 4623 2.452600 AACAACTTTGCCCCTCTTCA 57.547 45.000 0.00 0.00 0.00 3.02
4446 4630 5.104259 ACTTTGCCCCTCTTCATAGTTAG 57.896 43.478 0.00 0.00 0.00 2.34
4453 4637 6.043243 TGCCCCTCTTCATAGTTAGAATAAGG 59.957 42.308 0.00 0.00 32.11 2.69
4454 4638 6.468543 CCCCTCTTCATAGTTAGAATAAGGC 58.531 44.000 0.00 0.00 31.49 4.35
4455 4639 6.159988 CCCTCTTCATAGTTAGAATAAGGCG 58.840 44.000 0.00 0.00 31.49 5.52
4456 4640 6.239345 CCCTCTTCATAGTTAGAATAAGGCGT 60.239 42.308 0.00 0.00 31.49 5.68
4457 4641 7.039923 CCCTCTTCATAGTTAGAATAAGGCGTA 60.040 40.741 0.00 0.00 31.49 4.42
4458 4642 7.808856 CCTCTTCATAGTTAGAATAAGGCGTAC 59.191 40.741 0.00 0.00 0.00 3.67
4459 4643 8.461249 TCTTCATAGTTAGAATAAGGCGTACT 57.539 34.615 0.00 0.00 0.00 2.73
4460 4644 8.566260 TCTTCATAGTTAGAATAAGGCGTACTC 58.434 37.037 0.00 0.00 0.00 2.59
4461 4645 8.461249 TTCATAGTTAGAATAAGGCGTACTCT 57.539 34.615 0.00 0.00 0.00 3.24
4462 4646 9.565090 TTCATAGTTAGAATAAGGCGTACTCTA 57.435 33.333 0.00 0.00 0.00 2.43
4463 4647 9.217278 TCATAGTTAGAATAAGGCGTACTCTAG 57.783 37.037 0.00 0.00 0.00 2.43
4464 4648 9.217278 CATAGTTAGAATAAGGCGTACTCTAGA 57.783 37.037 0.00 0.00 0.00 2.43
4465 4649 7.733402 AGTTAGAATAAGGCGTACTCTAGAG 57.267 40.000 18.49 18.49 0.00 2.43
4466 4650 7.281841 AGTTAGAATAAGGCGTACTCTAGAGT 58.718 38.462 27.72 27.72 45.02 3.24
4467 4651 8.428063 AGTTAGAATAAGGCGTACTCTAGAGTA 58.572 37.037 25.58 25.58 42.54 2.59
4479 4663 5.468540 ACTCTAGAGTACATGTTGCACAA 57.531 39.130 24.04 0.00 40.43 3.33
4480 4664 5.853936 ACTCTAGAGTACATGTTGCACAAA 58.146 37.500 24.04 0.00 40.43 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 8.601845 ACAATTTTTAAGAGCGGCTTATTTTT 57.398 26.923 2.97 0.00 38.79 1.94
17 18 8.495148 CAACAATTTTTAAGAGCGGCTTATTTT 58.505 29.630 2.97 0.00 38.79 1.82
18 19 7.870445 TCAACAATTTTTAAGAGCGGCTTATTT 59.130 29.630 2.97 2.30 38.79 1.40
19 20 7.375053 TCAACAATTTTTAAGAGCGGCTTATT 58.625 30.769 2.97 5.27 38.79 1.40
20 21 6.919721 TCAACAATTTTTAAGAGCGGCTTAT 58.080 32.000 2.97 0.00 38.79 1.73
21 22 6.320494 TCAACAATTTTTAAGAGCGGCTTA 57.680 33.333 2.97 0.00 38.05 3.09
22 23 5.195001 TCAACAATTTTTAAGAGCGGCTT 57.805 34.783 2.97 0.00 40.68 4.35
23 24 4.321230 CCTCAACAATTTTTAAGAGCGGCT 60.321 41.667 0.00 0.00 0.00 5.52
24 25 3.920412 CCTCAACAATTTTTAAGAGCGGC 59.080 43.478 0.00 0.00 0.00 6.53
25 26 3.920412 GCCTCAACAATTTTTAAGAGCGG 59.080 43.478 0.00 0.00 0.00 5.52
26 27 4.798574 AGCCTCAACAATTTTTAAGAGCG 58.201 39.130 0.00 0.00 0.00 5.03
27 28 6.450545 AGAAGCCTCAACAATTTTTAAGAGC 58.549 36.000 0.00 0.00 0.00 4.09
28 29 9.965824 TTTAGAAGCCTCAACAATTTTTAAGAG 57.034 29.630 0.00 0.00 0.00 2.85
39 40 9.609346 GGTATAACTAATTTAGAAGCCTCAACA 57.391 33.333 10.39 0.00 0.00 3.33
40 41 9.609346 TGGTATAACTAATTTAGAAGCCTCAAC 57.391 33.333 10.39 0.00 0.00 3.18
57 58 8.422566 GGCTTCTGAACTAGTTATGGTATAACT 58.577 37.037 8.42 15.93 40.48 2.24
58 59 7.656542 GGGCTTCTGAACTAGTTATGGTATAAC 59.343 40.741 8.42 4.03 0.00 1.89
59 60 7.202066 GGGGCTTCTGAACTAGTTATGGTATAA 60.202 40.741 8.42 0.00 0.00 0.98
60 61 6.269307 GGGGCTTCTGAACTAGTTATGGTATA 59.731 42.308 8.42 0.00 0.00 1.47
61 62 5.071923 GGGGCTTCTGAACTAGTTATGGTAT 59.928 44.000 8.42 0.00 0.00 2.73
62 63 4.407945 GGGGCTTCTGAACTAGTTATGGTA 59.592 45.833 8.42 0.00 0.00 3.25
63 64 3.200165 GGGGCTTCTGAACTAGTTATGGT 59.800 47.826 8.42 0.00 0.00 3.55
64 65 3.199946 TGGGGCTTCTGAACTAGTTATGG 59.800 47.826 8.42 2.04 0.00 2.74
65 66 4.487714 TGGGGCTTCTGAACTAGTTATG 57.512 45.455 8.42 4.60 0.00 1.90
66 67 5.717119 ATTGGGGCTTCTGAACTAGTTAT 57.283 39.130 8.42 0.00 0.00 1.89
67 68 6.630203 TTATTGGGGCTTCTGAACTAGTTA 57.370 37.500 8.42 0.00 0.00 2.24
68 69 5.514500 TTATTGGGGCTTCTGAACTAGTT 57.486 39.130 8.13 8.13 0.00 2.24
69 70 5.514500 TTTATTGGGGCTTCTGAACTAGT 57.486 39.130 0.00 0.00 0.00 2.57
70 71 7.255277 GCTTATTTATTGGGGCTTCTGAACTAG 60.255 40.741 0.00 0.00 0.00 2.57
71 72 6.546034 GCTTATTTATTGGGGCTTCTGAACTA 59.454 38.462 0.00 0.00 0.00 2.24
72 73 5.360999 GCTTATTTATTGGGGCTTCTGAACT 59.639 40.000 0.00 0.00 0.00 3.01
73 74 5.592054 GCTTATTTATTGGGGCTTCTGAAC 58.408 41.667 0.00 0.00 0.00 3.18
74 75 4.338118 CGCTTATTTATTGGGGCTTCTGAA 59.662 41.667 0.00 0.00 0.00 3.02
75 76 3.882888 CGCTTATTTATTGGGGCTTCTGA 59.117 43.478 0.00 0.00 0.00 3.27
76 77 3.882888 TCGCTTATTTATTGGGGCTTCTG 59.117 43.478 0.00 0.00 0.00 3.02
77 78 4.137543 CTCGCTTATTTATTGGGGCTTCT 58.862 43.478 0.00 0.00 0.00 2.85
78 79 3.253432 CCTCGCTTATTTATTGGGGCTTC 59.747 47.826 0.00 0.00 0.00 3.86
79 80 3.222603 CCTCGCTTATTTATTGGGGCTT 58.777 45.455 0.00 0.00 0.00 4.35
80 81 2.863809 CCTCGCTTATTTATTGGGGCT 58.136 47.619 0.00 0.00 0.00 5.19
81 82 1.269723 GCCTCGCTTATTTATTGGGGC 59.730 52.381 0.00 0.00 0.00 5.80
82 83 1.535462 CGCCTCGCTTATTTATTGGGG 59.465 52.381 0.00 0.00 0.00 4.96
83 84 1.535462 CCGCCTCGCTTATTTATTGGG 59.465 52.381 0.00 0.00 0.00 4.12
84 85 1.069227 GCCGCCTCGCTTATTTATTGG 60.069 52.381 0.00 0.00 0.00 3.16
85 86 1.069227 GGCCGCCTCGCTTATTTATTG 60.069 52.381 0.71 0.00 0.00 1.90
86 87 1.202770 AGGCCGCCTCGCTTATTTATT 60.203 47.619 5.94 0.00 0.00 1.40
87 88 0.396811 AGGCCGCCTCGCTTATTTAT 59.603 50.000 5.94 0.00 0.00 1.40
88 89 1.042229 TAGGCCGCCTCGCTTATTTA 58.958 50.000 17.40 0.00 34.61 1.40
89 90 0.396811 ATAGGCCGCCTCGCTTATTT 59.603 50.000 17.40 0.00 34.61 1.40
90 91 0.320771 CATAGGCCGCCTCGCTTATT 60.321 55.000 17.40 0.00 34.61 1.40
91 92 1.293498 CATAGGCCGCCTCGCTTAT 59.707 57.895 17.40 0.00 34.61 1.73
92 93 2.734591 CATAGGCCGCCTCGCTTA 59.265 61.111 17.40 0.00 34.61 3.09
93 94 4.241555 CCATAGGCCGCCTCGCTT 62.242 66.667 17.40 0.00 34.61 4.68
95 96 3.750373 TTTCCATAGGCCGCCTCGC 62.750 63.158 17.40 0.00 34.61 5.03
96 97 0.746563 TTTTTCCATAGGCCGCCTCG 60.747 55.000 17.40 8.57 34.61 4.63
97 98 1.025041 CTTTTTCCATAGGCCGCCTC 58.975 55.000 17.40 0.00 34.61 4.70
98 99 1.037579 GCTTTTTCCATAGGCCGCCT 61.038 55.000 18.05 18.05 37.71 5.52
99 100 1.037579 AGCTTTTTCCATAGGCCGCC 61.038 55.000 0.00 0.00 0.00 6.13
100 101 0.101219 CAGCTTTTTCCATAGGCCGC 59.899 55.000 0.00 0.00 0.00 6.53
101 102 0.740737 CCAGCTTTTTCCATAGGCCG 59.259 55.000 0.00 0.00 0.00 6.13
102 103 1.114627 CCCAGCTTTTTCCATAGGCC 58.885 55.000 0.00 0.00 0.00 5.19
103 104 1.114627 CCCCAGCTTTTTCCATAGGC 58.885 55.000 0.00 0.00 0.00 3.93
104 105 2.659428 CTCCCCAGCTTTTTCCATAGG 58.341 52.381 0.00 0.00 0.00 2.57
105 106 2.242196 TCCTCCCCAGCTTTTTCCATAG 59.758 50.000 0.00 0.00 0.00 2.23
106 107 2.242196 CTCCTCCCCAGCTTTTTCCATA 59.758 50.000 0.00 0.00 0.00 2.74
107 108 1.006400 CTCCTCCCCAGCTTTTTCCAT 59.994 52.381 0.00 0.00 0.00 3.41
108 109 0.405585 CTCCTCCCCAGCTTTTTCCA 59.594 55.000 0.00 0.00 0.00 3.53
109 110 0.323816 CCTCCTCCCCAGCTTTTTCC 60.324 60.000 0.00 0.00 0.00 3.13
110 111 0.967887 GCCTCCTCCCCAGCTTTTTC 60.968 60.000 0.00 0.00 0.00 2.29
111 112 1.077445 GCCTCCTCCCCAGCTTTTT 59.923 57.895 0.00 0.00 0.00 1.94
112 113 2.766660 GCCTCCTCCCCAGCTTTT 59.233 61.111 0.00 0.00 0.00 2.27
113 114 3.721706 CGCCTCCTCCCCAGCTTT 61.722 66.667 0.00 0.00 0.00 3.51
118 119 3.714078 ATAAGCCGCCTCCTCCCCA 62.714 63.158 0.00 0.00 0.00 4.96
119 120 1.996070 AAATAAGCCGCCTCCTCCCC 61.996 60.000 0.00 0.00 0.00 4.81
120 121 0.106669 AAAATAAGCCGCCTCCTCCC 60.107 55.000 0.00 0.00 0.00 4.30
121 122 1.676529 GAAAAATAAGCCGCCTCCTCC 59.323 52.381 0.00 0.00 0.00 4.30
122 123 2.365582 TGAAAAATAAGCCGCCTCCTC 58.634 47.619 0.00 0.00 0.00 3.71
123 124 2.507407 TGAAAAATAAGCCGCCTCCT 57.493 45.000 0.00 0.00 0.00 3.69
124 125 2.735444 GCTTGAAAAATAAGCCGCCTCC 60.735 50.000 0.00 0.00 43.57 4.30
125 126 2.530177 GCTTGAAAAATAAGCCGCCTC 58.470 47.619 0.00 0.00 43.57 4.70
126 127 2.654749 GCTTGAAAAATAAGCCGCCT 57.345 45.000 0.00 0.00 43.57 5.52
132 133 4.987912 TCTTTTGGCGGCTTGAAAAATAAG 59.012 37.500 11.43 0.00 0.00 1.73
133 134 4.950050 TCTTTTGGCGGCTTGAAAAATAA 58.050 34.783 11.43 0.00 0.00 1.40
134 135 4.592485 TCTTTTGGCGGCTTGAAAAATA 57.408 36.364 11.43 0.00 0.00 1.40
135 136 3.467374 TCTTTTGGCGGCTTGAAAAAT 57.533 38.095 11.43 0.00 0.00 1.82
136 137 2.933260 GTTCTTTTGGCGGCTTGAAAAA 59.067 40.909 11.43 7.62 0.00 1.94
137 138 2.167487 AGTTCTTTTGGCGGCTTGAAAA 59.833 40.909 11.43 8.00 0.00 2.29
138 139 1.754226 AGTTCTTTTGGCGGCTTGAAA 59.246 42.857 11.43 7.94 0.00 2.69
139 140 1.066908 CAGTTCTTTTGGCGGCTTGAA 59.933 47.619 11.43 6.49 0.00 2.69
140 141 0.667993 CAGTTCTTTTGGCGGCTTGA 59.332 50.000 11.43 0.00 0.00 3.02
141 142 0.318955 CCAGTTCTTTTGGCGGCTTG 60.319 55.000 11.43 0.00 0.00 4.01
142 143 2.041153 CCAGTTCTTTTGGCGGCTT 58.959 52.632 11.43 0.00 0.00 4.35
143 144 3.763671 CCAGTTCTTTTGGCGGCT 58.236 55.556 11.43 0.00 0.00 5.52
148 149 4.381932 GGAATACATGGCCAGTTCTTTTGG 60.382 45.833 13.05 0.00 38.78 3.28
149 150 4.463891 AGGAATACATGGCCAGTTCTTTTG 59.536 41.667 13.05 4.95 0.00 2.44
150 151 4.463891 CAGGAATACATGGCCAGTTCTTTT 59.536 41.667 13.05 0.00 0.00 2.27
151 152 4.019174 CAGGAATACATGGCCAGTTCTTT 58.981 43.478 13.05 0.49 0.00 2.52
152 153 3.624777 CAGGAATACATGGCCAGTTCTT 58.375 45.455 13.05 6.67 0.00 2.52
153 154 2.092212 CCAGGAATACATGGCCAGTTCT 60.092 50.000 13.05 0.00 41.02 3.01
154 155 2.301346 CCAGGAATACATGGCCAGTTC 58.699 52.381 13.05 12.48 41.02 3.01
155 156 1.063717 CCCAGGAATACATGGCCAGTT 60.064 52.381 13.05 2.21 45.30 3.16
156 157 0.552848 CCCAGGAATACATGGCCAGT 59.447 55.000 13.05 12.25 45.30 4.00
157 158 0.825010 GCCCAGGAATACATGGCCAG 60.825 60.000 13.05 6.08 45.30 4.85
158 159 1.229927 GCCCAGGAATACATGGCCA 59.770 57.895 8.56 8.56 45.30 5.36
159 160 0.825010 CAGCCCAGGAATACATGGCC 60.825 60.000 0.00 0.00 45.30 5.36
160 161 1.458639 GCAGCCCAGGAATACATGGC 61.459 60.000 0.00 0.00 45.30 4.40
161 162 0.184451 AGCAGCCCAGGAATACATGG 59.816 55.000 0.00 0.00 46.10 3.66
162 163 1.679680 CAAGCAGCCCAGGAATACATG 59.320 52.381 0.00 0.00 0.00 3.21
163 164 1.285962 ACAAGCAGCCCAGGAATACAT 59.714 47.619 0.00 0.00 0.00 2.29
164 165 0.698238 ACAAGCAGCCCAGGAATACA 59.302 50.000 0.00 0.00 0.00 2.29
165 166 1.474077 CAACAAGCAGCCCAGGAATAC 59.526 52.381 0.00 0.00 0.00 1.89
166 167 1.354031 TCAACAAGCAGCCCAGGAATA 59.646 47.619 0.00 0.00 0.00 1.75
167 168 0.112995 TCAACAAGCAGCCCAGGAAT 59.887 50.000 0.00 0.00 0.00 3.01
168 169 0.106268 TTCAACAAGCAGCCCAGGAA 60.106 50.000 0.00 0.00 0.00 3.36
169 170 0.538057 CTTCAACAAGCAGCCCAGGA 60.538 55.000 0.00 0.00 0.00 3.86
170 171 1.530013 CCTTCAACAAGCAGCCCAGG 61.530 60.000 0.00 0.00 0.00 4.45
171 172 1.530013 CCCTTCAACAAGCAGCCCAG 61.530 60.000 0.00 0.00 0.00 4.45
172 173 1.531365 CCCTTCAACAAGCAGCCCA 60.531 57.895 0.00 0.00 0.00 5.36
173 174 2.278330 CCCCTTCAACAAGCAGCCC 61.278 63.158 0.00 0.00 0.00 5.19
174 175 2.278330 CCCCCTTCAACAAGCAGCC 61.278 63.158 0.00 0.00 0.00 4.85
175 176 1.228552 TCCCCCTTCAACAAGCAGC 60.229 57.895 0.00 0.00 0.00 5.25
176 177 0.401738 TCTCCCCCTTCAACAAGCAG 59.598 55.000 0.00 0.00 0.00 4.24
177 178 0.850100 TTCTCCCCCTTCAACAAGCA 59.150 50.000 0.00 0.00 0.00 3.91
178 179 1.995376 TTTCTCCCCCTTCAACAAGC 58.005 50.000 0.00 0.00 0.00 4.01
179 180 2.232208 GCATTTCTCCCCCTTCAACAAG 59.768 50.000 0.00 0.00 0.00 3.16
180 181 2.247358 GCATTTCTCCCCCTTCAACAA 58.753 47.619 0.00 0.00 0.00 2.83
181 182 1.549950 GGCATTTCTCCCCCTTCAACA 60.550 52.381 0.00 0.00 0.00 3.33
182 183 1.186200 GGCATTTCTCCCCCTTCAAC 58.814 55.000 0.00 0.00 0.00 3.18
183 184 0.783206 TGGCATTTCTCCCCCTTCAA 59.217 50.000 0.00 0.00 0.00 2.69
184 185 0.039618 GTGGCATTTCTCCCCCTTCA 59.960 55.000 0.00 0.00 0.00 3.02
185 186 0.039618 TGTGGCATTTCTCCCCCTTC 59.960 55.000 0.00 0.00 0.00 3.46
186 187 0.251787 GTGTGGCATTTCTCCCCCTT 60.252 55.000 0.00 0.00 0.00 3.95
187 188 1.384191 GTGTGGCATTTCTCCCCCT 59.616 57.895 0.00 0.00 0.00 4.79
188 189 1.682344 GGTGTGGCATTTCTCCCCC 60.682 63.158 0.00 0.00 0.00 5.40
189 190 0.324645 ATGGTGTGGCATTTCTCCCC 60.325 55.000 0.00 0.00 0.00 4.81
190 191 0.819582 CATGGTGTGGCATTTCTCCC 59.180 55.000 0.00 0.00 0.00 4.30
191 192 0.819582 CCATGGTGTGGCATTTCTCC 59.180 55.000 2.57 0.00 42.12 3.71
212 213 0.757935 TATCCGGCTGGGTCCAGTAC 60.758 60.000 12.87 10.38 45.24 2.73
213 214 0.469331 CTATCCGGCTGGGTCCAGTA 60.469 60.000 12.87 2.25 45.24 2.74
214 215 1.762460 CTATCCGGCTGGGTCCAGT 60.762 63.158 12.87 1.18 45.24 4.00
215 216 2.511452 CCTATCCGGCTGGGTCCAG 61.511 68.421 12.87 12.42 46.15 3.86
216 217 2.445845 CCTATCCGGCTGGGTCCA 60.446 66.667 12.87 0.00 37.00 4.02
217 218 2.446036 ACCTATCCGGCTGGGTCC 60.446 66.667 12.87 0.00 37.00 4.46
218 219 1.049289 AAGACCTATCCGGCTGGGTC 61.049 60.000 28.05 28.05 44.73 4.46
219 220 0.620700 AAAGACCTATCCGGCTGGGT 60.621 55.000 13.80 13.80 37.00 4.51
220 221 0.179045 CAAAGACCTATCCGGCTGGG 60.179 60.000 12.87 6.09 35.61 4.45
221 222 0.541863 ACAAAGACCTATCCGGCTGG 59.458 55.000 4.71 4.71 35.61 4.85
222 223 2.009774 CAACAAAGACCTATCCGGCTG 58.990 52.381 0.00 0.00 35.61 4.85
223 224 1.628846 ACAACAAAGACCTATCCGGCT 59.371 47.619 0.00 0.00 35.61 5.52
224 225 2.109425 ACAACAAAGACCTATCCGGC 57.891 50.000 0.00 0.00 35.61 6.13
225 226 4.517453 TGAAAACAACAAAGACCTATCCGG 59.483 41.667 0.00 0.00 39.35 5.14
226 227 5.682943 TGAAAACAACAAAGACCTATCCG 57.317 39.130 0.00 0.00 0.00 4.18
236 237 3.936564 AGCAGGCTTTGAAAACAACAAA 58.063 36.364 0.00 0.00 36.15 2.83
237 238 3.608316 AGCAGGCTTTGAAAACAACAA 57.392 38.095 0.00 0.00 0.00 2.83
238 239 3.608316 AAGCAGGCTTTGAAAACAACA 57.392 38.095 0.00 0.00 31.29 3.33
239 240 4.682787 ACTAAGCAGGCTTTGAAAACAAC 58.317 39.130 19.50 0.00 37.47 3.32
240 241 5.337578 AACTAAGCAGGCTTTGAAAACAA 57.662 34.783 19.50 0.00 37.47 2.83
241 242 5.108517 CAAACTAAGCAGGCTTTGAAAACA 58.891 37.500 19.50 0.00 37.47 2.83
242 243 4.507756 CCAAACTAAGCAGGCTTTGAAAAC 59.492 41.667 19.50 0.00 37.47 2.43
243 244 4.161377 ACCAAACTAAGCAGGCTTTGAAAA 59.839 37.500 19.50 0.00 37.47 2.29
244 245 3.704061 ACCAAACTAAGCAGGCTTTGAAA 59.296 39.130 19.50 0.00 37.47 2.69
245 246 3.295973 ACCAAACTAAGCAGGCTTTGAA 58.704 40.909 19.50 0.00 37.47 2.69
246 247 2.944129 ACCAAACTAAGCAGGCTTTGA 58.056 42.857 19.50 0.00 37.47 2.69
247 248 3.733443 AACCAAACTAAGCAGGCTTTG 57.267 42.857 12.27 12.52 37.47 2.77
248 249 4.470602 ACTAACCAAACTAAGCAGGCTTT 58.529 39.130 12.27 0.00 37.47 3.51
249 250 4.100279 ACTAACCAAACTAAGCAGGCTT 57.900 40.909 11.70 11.70 39.83 4.35
250 251 3.790089 ACTAACCAAACTAAGCAGGCT 57.210 42.857 0.00 0.00 0.00 4.58
251 252 3.818773 TGAACTAACCAAACTAAGCAGGC 59.181 43.478 0.00 0.00 0.00 4.85
252 253 5.305585 TCTGAACTAACCAAACTAAGCAGG 58.694 41.667 0.00 0.00 0.00 4.85
253 254 7.389053 AGAATCTGAACTAACCAAACTAAGCAG 59.611 37.037 0.00 0.00 0.00 4.24
254 255 7.173218 CAGAATCTGAACTAACCAAACTAAGCA 59.827 37.037 3.77 0.00 32.44 3.91
255 256 7.173390 ACAGAATCTGAACTAACCAAACTAAGC 59.827 37.037 18.20 0.00 35.18 3.09
256 257 8.608844 ACAGAATCTGAACTAACCAAACTAAG 57.391 34.615 18.20 0.00 35.18 2.18
257 258 8.974060 AACAGAATCTGAACTAACCAAACTAA 57.026 30.769 18.20 0.00 35.18 2.24
258 259 8.974060 AAACAGAATCTGAACTAACCAAACTA 57.026 30.769 18.20 0.00 35.18 2.24
259 260 7.881775 AAACAGAATCTGAACTAACCAAACT 57.118 32.000 18.20 0.00 35.18 2.66
260 261 9.052759 TCTAAACAGAATCTGAACTAACCAAAC 57.947 33.333 18.20 0.00 35.18 2.93
261 262 9.793259 ATCTAAACAGAATCTGAACTAACCAAA 57.207 29.630 18.20 0.00 35.18 3.28
262 263 9.436957 GATCTAAACAGAATCTGAACTAACCAA 57.563 33.333 18.20 0.00 35.18 3.67
263 264 8.816894 AGATCTAAACAGAATCTGAACTAACCA 58.183 33.333 18.20 0.00 35.18 3.67
264 265 9.660180 AAGATCTAAACAGAATCTGAACTAACC 57.340 33.333 18.20 1.54 35.18 2.85
267 268 9.877178 GGAAAGATCTAAACAGAATCTGAACTA 57.123 33.333 18.20 4.20 35.18 2.24
268 269 8.601546 AGGAAAGATCTAAACAGAATCTGAACT 58.398 33.333 18.20 3.20 35.18 3.01
269 270 8.785329 AGGAAAGATCTAAACAGAATCTGAAC 57.215 34.615 18.20 0.00 35.18 3.18
270 271 9.224267 CAAGGAAAGATCTAAACAGAATCTGAA 57.776 33.333 18.20 1.11 35.18 3.02
271 272 8.378565 ACAAGGAAAGATCTAAACAGAATCTGA 58.621 33.333 18.20 0.00 35.18 3.27
272 273 8.558973 ACAAGGAAAGATCTAAACAGAATCTG 57.441 34.615 8.98 8.98 37.52 2.90
276 277 9.847224 AACTAACAAGGAAAGATCTAAACAGAA 57.153 29.630 0.00 0.00 0.00 3.02
277 278 9.273016 CAACTAACAAGGAAAGATCTAAACAGA 57.727 33.333 0.00 0.00 0.00 3.41
278 279 9.273016 TCAACTAACAAGGAAAGATCTAAACAG 57.727 33.333 0.00 0.00 0.00 3.16
279 280 9.273016 CTCAACTAACAAGGAAAGATCTAAACA 57.727 33.333 0.00 0.00 0.00 2.83
280 281 9.274206 ACTCAACTAACAAGGAAAGATCTAAAC 57.726 33.333 0.00 0.00 0.00 2.01
281 282 9.490379 GACTCAACTAACAAGGAAAGATCTAAA 57.510 33.333 0.00 0.00 0.00 1.85
282 283 7.813148 CGACTCAACTAACAAGGAAAGATCTAA 59.187 37.037 0.00 0.00 0.00 2.10
283 284 7.313646 CGACTCAACTAACAAGGAAAGATCTA 58.686 38.462 0.00 0.00 0.00 1.98
284 285 6.159988 CGACTCAACTAACAAGGAAAGATCT 58.840 40.000 0.00 0.00 0.00 2.75
285 286 5.348997 CCGACTCAACTAACAAGGAAAGATC 59.651 44.000 0.00 0.00 0.00 2.75
286 287 5.221661 ACCGACTCAACTAACAAGGAAAGAT 60.222 40.000 0.00 0.00 0.00 2.40
287 288 4.100498 ACCGACTCAACTAACAAGGAAAGA 59.900 41.667 0.00 0.00 0.00 2.52
288 289 4.377897 ACCGACTCAACTAACAAGGAAAG 58.622 43.478 0.00 0.00 0.00 2.62
289 290 4.411256 ACCGACTCAACTAACAAGGAAA 57.589 40.909 0.00 0.00 0.00 3.13
290 291 4.141892 TGAACCGACTCAACTAACAAGGAA 60.142 41.667 0.00 0.00 0.00 3.36
291 292 3.385433 TGAACCGACTCAACTAACAAGGA 59.615 43.478 0.00 0.00 0.00 3.36
292 293 3.724374 TGAACCGACTCAACTAACAAGG 58.276 45.455 0.00 0.00 0.00 3.61
293 294 4.809426 ACTTGAACCGACTCAACTAACAAG 59.191 41.667 0.00 0.00 38.34 3.16
294 295 4.761975 ACTTGAACCGACTCAACTAACAA 58.238 39.130 0.00 0.00 32.00 2.83
295 296 4.098960 AGACTTGAACCGACTCAACTAACA 59.901 41.667 0.00 0.00 32.00 2.41
296 297 4.618965 AGACTTGAACCGACTCAACTAAC 58.381 43.478 0.00 0.00 32.00 2.34
297 298 4.931661 AGACTTGAACCGACTCAACTAA 57.068 40.909 0.00 0.00 32.00 2.24
298 299 4.931661 AAGACTTGAACCGACTCAACTA 57.068 40.909 0.00 0.00 32.00 2.24
299 300 3.821421 AAGACTTGAACCGACTCAACT 57.179 42.857 0.00 0.00 32.00 3.16
300 301 3.247886 GGAAAGACTTGAACCGACTCAAC 59.752 47.826 0.00 0.00 32.00 3.18
301 302 3.134081 AGGAAAGACTTGAACCGACTCAA 59.866 43.478 0.00 0.00 34.22 3.02
302 303 2.698797 AGGAAAGACTTGAACCGACTCA 59.301 45.455 0.00 0.00 0.00 3.41
303 304 3.388345 AGGAAAGACTTGAACCGACTC 57.612 47.619 0.00 0.00 0.00 3.36
304 305 4.950205 TTAGGAAAGACTTGAACCGACT 57.050 40.909 0.00 0.00 0.00 4.18
305 306 5.055144 AGTTTAGGAAAGACTTGAACCGAC 58.945 41.667 0.00 0.00 0.00 4.79
306 307 5.286267 AGTTTAGGAAAGACTTGAACCGA 57.714 39.130 0.00 0.00 0.00 4.69
307 308 5.407691 GGTAGTTTAGGAAAGACTTGAACCG 59.592 44.000 0.00 0.00 0.00 4.44
308 309 6.293698 TGGTAGTTTAGGAAAGACTTGAACC 58.706 40.000 0.00 0.00 0.00 3.62
309 310 7.981102 ATGGTAGTTTAGGAAAGACTTGAAC 57.019 36.000 0.00 0.00 0.00 3.18
311 312 9.498176 GTTAATGGTAGTTTAGGAAAGACTTGA 57.502 33.333 0.00 0.00 0.00 3.02
312 313 9.280174 TGTTAATGGTAGTTTAGGAAAGACTTG 57.720 33.333 0.00 0.00 0.00 3.16
330 331 7.176515 TGCTAATTGCCTACCATATGTTAATGG 59.823 37.037 1.24 1.33 45.58 3.16
331 332 8.109705 TGCTAATTGCCTACCATATGTTAATG 57.890 34.615 1.24 0.00 42.00 1.90
332 333 8.884124 ATGCTAATTGCCTACCATATGTTAAT 57.116 30.769 1.24 0.00 42.00 1.40
333 334 9.973661 ATATGCTAATTGCCTACCATATGTTAA 57.026 29.630 1.24 0.00 42.00 2.01
334 335 9.394767 CATATGCTAATTGCCTACCATATGTTA 57.605 33.333 1.24 0.00 42.00 2.41
335 336 7.340232 CCATATGCTAATTGCCTACCATATGTT 59.660 37.037 13.94 0.00 39.89 2.71
336 337 6.830324 CCATATGCTAATTGCCTACCATATGT 59.170 38.462 13.94 0.00 39.89 2.29
337 338 7.056006 TCCATATGCTAATTGCCTACCATATG 58.944 38.462 0.00 10.07 40.60 1.78
338 339 7.211897 TCCATATGCTAATTGCCTACCATAT 57.788 36.000 0.00 0.00 42.00 1.78
339 340 6.634889 TCCATATGCTAATTGCCTACCATA 57.365 37.500 0.00 0.00 42.00 2.74
340 341 5.519183 TCCATATGCTAATTGCCTACCAT 57.481 39.130 0.00 0.00 42.00 3.55
341 342 4.991789 TCCATATGCTAATTGCCTACCA 57.008 40.909 0.00 0.00 42.00 3.25
342 343 5.945784 TGAATCCATATGCTAATTGCCTACC 59.054 40.000 0.00 0.00 42.00 3.18
343 344 6.094603 CCTGAATCCATATGCTAATTGCCTAC 59.905 42.308 0.00 0.00 42.00 3.18
344 345 6.182627 CCTGAATCCATATGCTAATTGCCTA 58.817 40.000 0.00 0.00 42.00 3.93
345 346 5.014858 CCTGAATCCATATGCTAATTGCCT 58.985 41.667 0.00 0.00 42.00 4.75
346 347 4.768968 ACCTGAATCCATATGCTAATTGCC 59.231 41.667 0.00 0.00 42.00 4.52
347 348 5.972107 ACCTGAATCCATATGCTAATTGC 57.028 39.130 0.00 0.00 43.25 3.56
348 349 7.765819 TCGATACCTGAATCCATATGCTAATTG 59.234 37.037 0.00 0.00 0.00 2.32
349 350 7.851228 TCGATACCTGAATCCATATGCTAATT 58.149 34.615 0.00 0.00 0.00 1.40
350 351 7.423844 TCGATACCTGAATCCATATGCTAAT 57.576 36.000 0.00 0.00 0.00 1.73
351 352 6.850752 TCGATACCTGAATCCATATGCTAA 57.149 37.500 0.00 0.00 0.00 3.09
352 353 6.663523 TCTTCGATACCTGAATCCATATGCTA 59.336 38.462 0.00 0.00 0.00 3.49
353 354 5.481824 TCTTCGATACCTGAATCCATATGCT 59.518 40.000 0.00 0.00 0.00 3.79
354 355 5.724328 TCTTCGATACCTGAATCCATATGC 58.276 41.667 0.00 0.00 0.00 3.14
355 356 8.783833 ATTTCTTCGATACCTGAATCCATATG 57.216 34.615 0.00 0.00 0.00 1.78
358 359 9.057089 GTTTATTTCTTCGATACCTGAATCCAT 57.943 33.333 0.00 0.00 0.00 3.41
359 360 8.044309 TGTTTATTTCTTCGATACCTGAATCCA 58.956 33.333 0.00 0.00 0.00 3.41
360 361 8.433421 TGTTTATTTCTTCGATACCTGAATCC 57.567 34.615 0.00 0.00 0.00 3.01
361 362 9.314321 TCTGTTTATTTCTTCGATACCTGAATC 57.686 33.333 0.00 0.00 0.00 2.52
362 363 9.319143 CTCTGTTTATTTCTTCGATACCTGAAT 57.681 33.333 0.00 0.00 0.00 2.57
363 364 8.528643 TCTCTGTTTATTTCTTCGATACCTGAA 58.471 33.333 0.00 0.00 0.00 3.02
364 365 8.063200 TCTCTGTTTATTTCTTCGATACCTGA 57.937 34.615 0.00 0.00 0.00 3.86
365 366 8.703604 TTCTCTGTTTATTTCTTCGATACCTG 57.296 34.615 0.00 0.00 0.00 4.00
366 367 9.720769 TTTTCTCTGTTTATTTCTTCGATACCT 57.279 29.630 0.00 0.00 0.00 3.08
367 368 9.974750 CTTTTCTCTGTTTATTTCTTCGATACC 57.025 33.333 0.00 0.00 0.00 2.73
368 369 9.479278 GCTTTTCTCTGTTTATTTCTTCGATAC 57.521 33.333 0.00 0.00 0.00 2.24
369 370 9.214957 TGCTTTTCTCTGTTTATTTCTTCGATA 57.785 29.630 0.00 0.00 0.00 2.92
370 371 8.099364 TGCTTTTCTCTGTTTATTTCTTCGAT 57.901 30.769 0.00 0.00 0.00 3.59
371 372 7.441157 TCTGCTTTTCTCTGTTTATTTCTTCGA 59.559 33.333 0.00 0.00 0.00 3.71
372 373 7.576236 TCTGCTTTTCTCTGTTTATTTCTTCG 58.424 34.615 0.00 0.00 0.00 3.79
373 374 7.536964 GCTCTGCTTTTCTCTGTTTATTTCTTC 59.463 37.037 0.00 0.00 0.00 2.87
374 375 7.230309 AGCTCTGCTTTTCTCTGTTTATTTCTT 59.770 33.333 0.00 0.00 33.89 2.52
375 376 6.714356 AGCTCTGCTTTTCTCTGTTTATTTCT 59.286 34.615 0.00 0.00 33.89 2.52
376 377 6.907741 AGCTCTGCTTTTCTCTGTTTATTTC 58.092 36.000 0.00 0.00 33.89 2.17
377 378 6.890979 AGCTCTGCTTTTCTCTGTTTATTT 57.109 33.333 0.00 0.00 33.89 1.40
392 393 1.944177 TCTGGAGGTAAAGCTCTGCT 58.056 50.000 8.91 0.00 42.56 4.24
393 394 2.289694 TGTTCTGGAGGTAAAGCTCTGC 60.290 50.000 8.91 0.00 0.00 4.26
394 395 3.259374 TCTGTTCTGGAGGTAAAGCTCTG 59.741 47.826 8.91 3.50 0.00 3.35
395 396 3.511477 TCTGTTCTGGAGGTAAAGCTCT 58.489 45.455 8.91 0.00 0.00 4.09
396 397 3.963428 TCTGTTCTGGAGGTAAAGCTC 57.037 47.619 0.46 0.46 0.00 4.09
397 398 4.100373 AGATCTGTTCTGGAGGTAAAGCT 58.900 43.478 0.00 0.00 31.79 3.74
398 399 4.479786 AGATCTGTTCTGGAGGTAAAGC 57.520 45.455 0.00 0.00 31.79 3.51
399 400 6.553100 AGGATAGATCTGTTCTGGAGGTAAAG 59.447 42.308 5.18 0.00 35.79 1.85
400 401 6.444704 AGGATAGATCTGTTCTGGAGGTAAA 58.555 40.000 5.18 0.00 35.79 2.01
401 402 6.031964 AGGATAGATCTGTTCTGGAGGTAA 57.968 41.667 5.18 0.00 35.79 2.85
402 403 5.134509 TGAGGATAGATCTGTTCTGGAGGTA 59.865 44.000 4.76 0.00 35.79 3.08
403 404 4.078922 TGAGGATAGATCTGTTCTGGAGGT 60.079 45.833 4.76 0.00 35.79 3.85
404 405 4.478203 TGAGGATAGATCTGTTCTGGAGG 58.522 47.826 4.76 0.00 35.79 4.30
405 406 5.047164 CCATGAGGATAGATCTGTTCTGGAG 60.047 48.000 4.76 0.00 36.89 3.86
406 407 4.837298 CCATGAGGATAGATCTGTTCTGGA 59.163 45.833 4.76 0.00 36.89 3.86
407 408 4.563168 GCCATGAGGATAGATCTGTTCTGG 60.563 50.000 4.76 2.75 36.89 3.86
408 409 4.567971 GCCATGAGGATAGATCTGTTCTG 58.432 47.826 4.76 0.00 36.89 3.02
409 410 3.257873 CGCCATGAGGATAGATCTGTTCT 59.742 47.826 5.18 1.83 36.89 3.01
410 411 3.006323 ACGCCATGAGGATAGATCTGTTC 59.994 47.826 5.18 0.00 36.89 3.18
411 412 2.968574 ACGCCATGAGGATAGATCTGTT 59.031 45.455 5.18 0.00 36.89 3.16
412 413 2.560542 GACGCCATGAGGATAGATCTGT 59.439 50.000 5.18 0.00 36.89 3.41
413 414 2.560105 TGACGCCATGAGGATAGATCTG 59.440 50.000 5.18 0.00 36.89 2.90
414 415 2.881734 TGACGCCATGAGGATAGATCT 58.118 47.619 0.00 0.00 36.89 2.75
415 416 3.883830 ATGACGCCATGAGGATAGATC 57.116 47.619 0.00 0.00 36.89 2.75
438 439 2.436109 GGAGTTCAGGCTTGGGCA 59.564 61.111 0.00 0.00 40.87 5.36
439 440 1.562672 TAGGGAGTTCAGGCTTGGGC 61.563 60.000 0.00 0.00 37.82 5.36
481 491 3.108376 CCTAGGTTATGGAGGGGATAGC 58.892 54.545 0.00 0.00 0.00 2.97
493 503 4.783227 AGGTTGTGTCATGACCTAGGTTAT 59.217 41.667 22.85 15.23 41.83 1.89
519 529 3.721087 ACTATGGCAGCAAAGTACCTT 57.279 42.857 0.00 0.00 0.00 3.50
564 574 2.988493 CGACACAAAATGCTTTCATGGG 59.012 45.455 0.00 0.00 32.23 4.00
570 580 3.115554 GCTGTTCGACACAAAATGCTTT 58.884 40.909 0.00 0.00 33.87 3.51
592 602 1.534028 GTACATGCGAAAATGGCACG 58.466 50.000 0.00 0.00 44.23 5.34
641 651 2.503331 TGTGCCATCAATCGAACTGTT 58.497 42.857 0.00 0.00 0.00 3.16
708 718 9.121517 GACATGCAACATTAATAGCATAATCAC 57.878 33.333 16.90 7.70 45.14 3.06
725 735 6.368791 TGATTACTACACAGAAGACATGCAAC 59.631 38.462 0.00 0.00 0.00 4.17
799 813 3.937706 GCAGATCATGAAGCAGTAACAGT 59.062 43.478 0.00 0.00 0.00 3.55
942 957 1.904287 ACGCCAGCAATTCCTTTGTA 58.096 45.000 0.00 0.00 37.65 2.41
966 983 8.366401 TGCCAACTGATATTTTCTCAAATGAAA 58.634 29.630 0.00 0.00 34.29 2.69
1065 1082 2.350458 GGGGGTCAATGTGCGCAAT 61.350 57.895 14.00 5.34 0.00 3.56
1189 1206 1.589716 GGCAGAACATCACCAGGCAC 61.590 60.000 0.00 0.00 0.00 5.01
1199 1216 0.111061 TGCAGAGGTTGGCAGAACAT 59.889 50.000 0.00 0.00 34.58 2.71
1236 1253 2.835049 TTGCACCGGGTTGGGATCA 61.835 57.895 6.32 0.00 44.64 2.92
1281 1364 6.094881 TGTTTGAAGTACCATTAGCATTAGCC 59.905 38.462 0.00 0.00 43.56 3.93
1423 1509 3.429410 GCCATAGGAACCAAATGAACTGC 60.429 47.826 7.47 0.00 0.00 4.40
1442 1528 1.272092 CCAAATGAACTGGAGGAGCCA 60.272 52.381 0.00 0.00 46.96 4.75
1472 1594 3.009115 CTGGGGGAGCGGAAGGAA 61.009 66.667 0.00 0.00 0.00 3.36
1473 1595 3.556038 TTCTGGGGGAGCGGAAGGA 62.556 63.158 0.00 0.00 0.00 3.36
1474 1596 3.009115 TTCTGGGGGAGCGGAAGG 61.009 66.667 0.00 0.00 0.00 3.46
1475 1597 2.586792 CTTCTGGGGGAGCGGAAG 59.413 66.667 0.00 0.00 0.00 3.46
1476 1598 2.465010 TACCTTCTGGGGGAGCGGAA 62.465 60.000 0.00 0.00 40.03 4.30
1477 1599 2.465010 TTACCTTCTGGGGGAGCGGA 62.465 60.000 0.00 0.00 40.03 5.54
1478 1600 1.345715 ATTACCTTCTGGGGGAGCGG 61.346 60.000 0.00 0.00 40.03 5.52
1479 1601 1.420430 TATTACCTTCTGGGGGAGCG 58.580 55.000 0.00 0.00 40.03 5.03
1480 1602 4.597940 AGTATTATTACCTTCTGGGGGAGC 59.402 45.833 0.00 0.00 40.03 4.70
1485 1607 7.147549 TGGAGAACAGTATTATTACCTTCTGGG 60.148 40.741 8.82 0.00 41.89 4.45
1626 1748 3.691609 CAGGAGGTGTCTGAAAAATAGGC 59.308 47.826 0.00 0.00 34.36 3.93
2013 2150 1.519246 CTTCGCCTCATCCAGCTGA 59.481 57.895 17.39 1.21 0.00 4.26
2211 2348 6.313905 CCTTACCAAACTTAGCAGACATGTAG 59.686 42.308 0.00 0.00 0.00 2.74
2487 2627 2.356667 CCTTTCTCCACCCAGGCC 59.643 66.667 0.00 0.00 37.29 5.19
2947 3088 6.209391 ACTTCAAAGTGGATTTGGATACCTTG 59.791 38.462 0.00 0.00 46.93 3.61
3055 3196 7.866729 TCAACAGCGTTCTTGTCAATAATTTA 58.133 30.769 0.00 0.00 0.00 1.40
3072 3213 0.094216 CGTCTTCTGCATCAACAGCG 59.906 55.000 0.00 0.00 37.59 5.18
3124 3265 4.433615 AGTGCATAGTTCCATCTTACGTG 58.566 43.478 0.00 0.00 0.00 4.49
3146 3287 4.789807 ACTAGATTCGCCCAGTACTTCTA 58.210 43.478 0.00 0.00 0.00 2.10
3151 3292 2.308690 AGGACTAGATTCGCCCAGTAC 58.691 52.381 0.00 0.00 0.00 2.73
3669 3838 4.578928 TGAGTTCTGACTTTACAAAAGGGC 59.421 41.667 4.56 0.00 35.88 5.19
3862 4034 3.247411 GCCGTGCTTGCAAACTAAATTTT 59.753 39.130 0.00 0.00 0.00 1.82
3941 4113 0.828022 TTATGTTCGCCGAGGATGGT 59.172 50.000 0.00 0.00 0.00 3.55
3964 4136 3.121113 CCAAATCGAACGTTTTTCATGGC 59.879 43.478 0.46 0.00 0.00 4.40
3986 4158 4.725790 AACCTCAGATTTTTAGGCATGC 57.274 40.909 9.90 9.90 33.42 4.06
4008 4180 5.708736 TTTAAGGACCTGAATATCCAGCA 57.291 39.130 0.00 0.00 37.47 4.41
4087 4259 6.373774 TCTGCACAATGTTTGAAAATTGGTTT 59.626 30.769 10.50 0.00 37.96 3.27
4131 4303 9.030452 TGTGGGCTATAAAACAACATTATTTCT 57.970 29.630 0.00 0.00 0.00 2.52
4245 4418 3.058016 CAGTTGTTGTGGTGAGCCTTATG 60.058 47.826 0.00 0.00 35.27 1.90
4280 4453 3.433740 GGATCTACAGGTGGATGGGAAAC 60.434 52.174 2.83 0.00 30.61 2.78
4285 4458 2.402564 ACAGGATCTACAGGTGGATGG 58.597 52.381 2.83 0.00 30.61 3.51
4308 4481 9.335891 CATCAGATTACGAACTAGACATACATC 57.664 37.037 0.00 0.00 0.00 3.06
4321 4494 8.197439 TCAAAGATAAGCTCATCAGATTACGAA 58.803 33.333 0.00 0.00 33.32 3.85
4439 4623 9.439500 CTCTAGAGTACGCCTTATTCTAACTAT 57.561 37.037 11.89 0.00 30.71 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.