Multiple sequence alignment - TraesCS3D01G377300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G377300 chr3D 100.000 3280 0 0 1 3280 492130279 492133558 0.000000e+00 6058.0
1 TraesCS3D01G377300 chr3D 95.345 537 24 1 2492 3027 579568117 579568653 0.000000e+00 852.0
2 TraesCS3D01G377300 chr3D 94.972 537 26 1 2492 3027 579557192 579557728 0.000000e+00 841.0
3 TraesCS3D01G377300 chr3D 84.261 521 57 12 1782 2302 470395207 470395702 4.920000e-133 484.0
4 TraesCS3D01G377300 chr3D 83.556 523 60 9 1780 2302 492612161 492612657 1.780000e-127 466.0
5 TraesCS3D01G377300 chr3D 83.527 516 61 11 1787 2302 492654706 492655197 8.290000e-126 460.0
6 TraesCS3D01G377300 chr3D 82.039 206 31 3 115 315 607320967 607320763 1.560000e-38 171.0
7 TraesCS3D01G377300 chr3D 86.486 148 17 2 2349 2493 492612655 492612802 3.390000e-35 159.0
8 TraesCS3D01G377300 chr3D 95.833 48 2 0 2311 2358 614251133 614251086 9.760000e-11 78.7
9 TraesCS3D01G377300 chr3A 89.555 1867 86 45 498 2314 633921455 633923262 0.000000e+00 2266.0
10 TraesCS3D01G377300 chr3A 83.000 800 83 22 1506 2300 634103251 634104002 0.000000e+00 675.0
11 TraesCS3D01G377300 chr3A 92.520 254 15 2 3027 3280 633923538 633923787 8.650000e-96 361.0
12 TraesCS3D01G377300 chr3A 91.908 173 6 5 2326 2493 633923354 633923523 5.470000e-58 235.0
13 TraesCS3D01G377300 chr3A 83.721 258 26 11 3026 3274 634121354 634121604 2.550000e-56 230.0
14 TraesCS3D01G377300 chr3B 90.434 1683 62 38 658 2300 653151577 653153200 0.000000e+00 2124.0
15 TraesCS3D01G377300 chr3B 83.779 524 57 14 1780 2302 653617388 653617884 3.830000e-129 472.0
16 TraesCS3D01G377300 chr1D 95.531 537 23 1 2492 3027 250740831 250741367 0.000000e+00 857.0
17 TraesCS3D01G377300 chr1D 95.158 537 25 1 2492 3027 19874681 19875217 0.000000e+00 846.0
18 TraesCS3D01G377300 chr1D 84.280 528 52 22 1141 1659 364625277 364624772 1.370000e-133 486.0
19 TraesCS3D01G377300 chr1B 95.531 537 23 1 2492 3027 305284316 305284852 0.000000e+00 857.0
20 TraesCS3D01G377300 chr1B 84.476 496 57 16 1142 1632 487951486 487951006 3.830000e-129 472.0
21 TraesCS3D01G377300 chr1B 83.571 140 18 4 329 464 577610461 577610323 3.440000e-25 126.0
22 TraesCS3D01G377300 chr1B 83.099 142 21 2 325 463 642605730 642605871 3.440000e-25 126.0
23 TraesCS3D01G377300 chr6D 95.149 536 26 0 2492 3027 321123139 321122604 0.000000e+00 846.0
24 TraesCS3D01G377300 chr6D 85.612 139 10 7 329 464 383743564 383743433 1.590000e-28 137.0
25 TraesCS3D01G377300 chr6D 83.448 145 18 4 325 464 388209750 388209893 2.660000e-26 130.0
26 TraesCS3D01G377300 chr5D 95.158 537 25 1 2492 3027 342526240 342525704 0.000000e+00 846.0
27 TraesCS3D01G377300 chr5D 95.318 534 22 3 2493 3025 397030357 397029826 0.000000e+00 845.0
28 TraesCS3D01G377300 chr5D 92.481 266 20 0 1146 1411 425077485 425077220 6.640000e-102 381.0
29 TraesCS3D01G377300 chr5D 85.714 147 21 0 1508 1654 200501538 200501684 4.380000e-34 156.0
30 TraesCS3D01G377300 chr5D 86.525 141 15 3 328 464 462454793 462454653 5.670000e-33 152.0
31 TraesCS3D01G377300 chrUn 94.972 537 25 2 2492 3027 115110323 115109788 0.000000e+00 841.0
32 TraesCS3D01G377300 chr1A 85.687 517 57 16 1142 1652 463461701 463461196 2.240000e-146 529.0
33 TraesCS3D01G377300 chr1A 82.126 207 31 3 115 316 541655421 541655626 4.350000e-39 172.0
34 TraesCS3D01G377300 chr1A 84.211 133 15 3 334 463 388749791 388749920 1.240000e-24 124.0
35 TraesCS3D01G377300 chr1A 79.856 139 24 4 1510 1646 545000601 545000737 7.490000e-17 99.0
36 TraesCS3D01G377300 chr1A 79.167 144 25 5 1506 1648 544928190 544928329 9.690000e-16 95.3
37 TraesCS3D01G377300 chr5A 91.729 266 22 0 1146 1411 539093485 539093220 1.440000e-98 370.0
38 TraesCS3D01G377300 chr7D 88.971 272 27 3 1141 1410 262698962 262698692 1.890000e-87 333.0
39 TraesCS3D01G377300 chr7D 87.407 135 16 1 115 249 617807094 617806961 1.580000e-33 154.0
40 TraesCS3D01G377300 chr7D 80.000 140 28 0 1513 1652 262698693 262698554 1.610000e-18 104.0
41 TraesCS3D01G377300 chr7B 88.192 271 29 3 1142 1410 241107676 241107945 1.470000e-83 320.0
42 TraesCS3D01G377300 chr7B 97.778 45 1 0 2311 2355 714471635 714471591 9.760000e-11 78.7
43 TraesCS3D01G377300 chr6A 83.158 190 23 3 116 305 490474256 490474076 7.280000e-37 165.0
44 TraesCS3D01G377300 chr4B 81.553 206 32 3 115 315 3708700 3708904 7.280000e-37 165.0
45 TraesCS3D01G377300 chr4B 90.244 123 12 0 1510 1632 100576909 100577031 9.420000e-36 161.0
46 TraesCS3D01G377300 chr4B 80.583 206 34 3 115 315 3687545 3687749 1.580000e-33 154.0
47 TraesCS3D01G377300 chr4B 80.097 206 35 3 115 315 3697181 3697385 7.330000e-32 148.0
48 TraesCS3D01G377300 chr4B 84.892 139 14 5 329 464 27243655 27243789 2.050000e-27 134.0
49 TraesCS3D01G377300 chr4B 90.323 62 4 2 2311 2370 174776710 174776771 2.710000e-11 80.5
50 TraesCS3D01G377300 chr4B 90.323 62 4 2 2311 2370 645933462 645933523 2.710000e-11 80.5
51 TraesCS3D01G377300 chr4B 94.118 51 3 0 2306 2356 517959037 517958987 9.760000e-11 78.7
52 TraesCS3D01G377300 chr4A 90.244 123 12 0 1510 1632 517884847 517884969 9.420000e-36 161.0
53 TraesCS3D01G377300 chr4A 90.476 63 2 4 2311 2370 203256434 203256495 2.710000e-11 80.5
54 TraesCS3D01G377300 chr5B 86.957 138 15 3 115 251 689907873 689908008 5.670000e-33 152.0
55 TraesCS3D01G377300 chr5B 82.759 145 16 7 325 464 581220863 581221003 1.600000e-23 121.0
56 TraesCS3D01G377300 chr2A 86.957 138 15 3 115 251 19244519 19244384 5.670000e-33 152.0
57 TraesCS3D01G377300 chr6B 86.232 138 16 3 115 251 682361467 682361602 2.640000e-31 147.0
58 TraesCS3D01G377300 chr2D 83.571 140 19 4 328 464 190024125 190023987 9.550000e-26 128.0
59 TraesCS3D01G377300 chr4D 92.308 52 3 1 2315 2366 114329184 114329234 4.540000e-09 73.1
60 TraesCS3D01G377300 chr2B 90.909 55 4 1 2311 2365 14619125 14619178 4.540000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G377300 chr3D 492130279 492133558 3279 False 6058.0 6058 100.000000 1 3280 1 chr3D.!!$F2 3279
1 TraesCS3D01G377300 chr3D 579568117 579568653 536 False 852.0 852 95.345000 2492 3027 1 chr3D.!!$F5 535
2 TraesCS3D01G377300 chr3D 579557192 579557728 536 False 841.0 841 94.972000 2492 3027 1 chr3D.!!$F4 535
3 TraesCS3D01G377300 chr3D 492612161 492612802 641 False 312.5 466 85.021000 1780 2493 2 chr3D.!!$F6 713
4 TraesCS3D01G377300 chr3A 633921455 633923787 2332 False 954.0 2266 91.327667 498 3280 3 chr3A.!!$F3 2782
5 TraesCS3D01G377300 chr3A 634103251 634104002 751 False 675.0 675 83.000000 1506 2300 1 chr3A.!!$F1 794
6 TraesCS3D01G377300 chr3B 653151577 653153200 1623 False 2124.0 2124 90.434000 658 2300 1 chr3B.!!$F1 1642
7 TraesCS3D01G377300 chr1D 250740831 250741367 536 False 857.0 857 95.531000 2492 3027 1 chr1D.!!$F2 535
8 TraesCS3D01G377300 chr1D 19874681 19875217 536 False 846.0 846 95.158000 2492 3027 1 chr1D.!!$F1 535
9 TraesCS3D01G377300 chr1D 364624772 364625277 505 True 486.0 486 84.280000 1141 1659 1 chr1D.!!$R1 518
10 TraesCS3D01G377300 chr1B 305284316 305284852 536 False 857.0 857 95.531000 2492 3027 1 chr1B.!!$F1 535
11 TraesCS3D01G377300 chr6D 321122604 321123139 535 True 846.0 846 95.149000 2492 3027 1 chr6D.!!$R1 535
12 TraesCS3D01G377300 chr5D 342525704 342526240 536 True 846.0 846 95.158000 2492 3027 1 chr5D.!!$R1 535
13 TraesCS3D01G377300 chr5D 397029826 397030357 531 True 845.0 845 95.318000 2493 3025 1 chr5D.!!$R2 532
14 TraesCS3D01G377300 chrUn 115109788 115110323 535 True 841.0 841 94.972000 2492 3027 1 chrUn.!!$R1 535
15 TraesCS3D01G377300 chr1A 463461196 463461701 505 True 529.0 529 85.687000 1142 1652 1 chr1A.!!$R1 510

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
45 46 0.100325 TGGTGCAAAGAAACTGTGCG 59.900 50.0 8.98 0.0 46.83 5.34 F
46 47 0.100503 GGTGCAAAGAAACTGTGCGT 59.899 50.0 8.98 0.0 46.83 5.24 F
613 614 0.179097 TGTGTTGTCTACGCTGTGCA 60.179 50.0 0.00 0.0 38.12 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1091 1139 0.036875 CCCTTCCCGCTCAGTTTCTT 59.963 55.000 0.0 0.0 0.00 2.52 R
1736 1812 1.078567 GTGCTGCTCTGGAAGGAGG 60.079 63.158 0.0 0.0 43.35 4.30 R
2585 2756 0.459585 TATGACGCCTTTGTCTCGGC 60.460 55.000 0.0 0.0 42.86 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.876701 AACACACGTCACATGGCT 57.123 50.000 0.00 0.00 0.00 4.75
18 19 3.094386 AACACACGTCACATGGCTT 57.906 47.368 0.00 0.00 0.00 4.35
19 20 0.662619 AACACACGTCACATGGCTTG 59.337 50.000 0.00 0.00 0.00 4.01
20 21 1.081906 CACACGTCACATGGCTTGC 60.082 57.895 0.00 0.00 0.00 4.01
21 22 1.525765 ACACGTCACATGGCTTGCA 60.526 52.632 0.00 0.00 0.00 4.08
22 23 1.100463 ACACGTCACATGGCTTGCAA 61.100 50.000 0.00 0.00 0.00 4.08
23 24 0.241749 CACGTCACATGGCTTGCAAT 59.758 50.000 0.00 0.00 0.00 3.56
24 25 0.241749 ACGTCACATGGCTTGCAATG 59.758 50.000 8.31 8.31 0.00 2.82
25 26 0.241749 CGTCACATGGCTTGCAATGT 59.758 50.000 9.62 9.62 37.50 2.71
26 27 1.336148 CGTCACATGGCTTGCAATGTT 60.336 47.619 12.47 0.00 34.81 2.71
27 28 2.063266 GTCACATGGCTTGCAATGTTG 58.937 47.619 12.47 8.88 34.81 3.33
28 29 1.001068 TCACATGGCTTGCAATGTTGG 59.999 47.619 12.47 3.91 34.81 3.77
29 30 1.050204 ACATGGCTTGCAATGTTGGT 58.950 45.000 9.62 0.00 33.19 3.67
30 31 1.270412 ACATGGCTTGCAATGTTGGTG 60.270 47.619 9.62 0.00 33.19 4.17
31 32 0.320946 ATGGCTTGCAATGTTGGTGC 60.321 50.000 0.00 0.00 42.55 5.01
39 40 3.590720 GCAATGTTGGTGCAAAGAAAC 57.409 42.857 0.00 0.00 41.80 2.78
40 41 3.197265 GCAATGTTGGTGCAAAGAAACT 58.803 40.909 0.00 0.00 41.80 2.66
41 42 3.001533 GCAATGTTGGTGCAAAGAAACTG 59.998 43.478 0.00 0.00 41.80 3.16
42 43 4.183101 CAATGTTGGTGCAAAGAAACTGT 58.817 39.130 0.00 0.00 0.00 3.55
43 44 3.229276 TGTTGGTGCAAAGAAACTGTG 57.771 42.857 0.00 0.00 0.00 3.66
44 45 1.926510 GTTGGTGCAAAGAAACTGTGC 59.073 47.619 6.94 6.94 44.36 4.57
45 46 0.100325 TGGTGCAAAGAAACTGTGCG 59.900 50.000 8.98 0.00 46.83 5.34
46 47 0.100503 GGTGCAAAGAAACTGTGCGT 59.899 50.000 8.98 0.00 46.83 5.24
47 48 1.466855 GTGCAAAGAAACTGTGCGTC 58.533 50.000 8.98 2.42 46.83 5.19
48 49 0.380378 TGCAAAGAAACTGTGCGTCC 59.620 50.000 8.98 0.00 46.83 4.79
49 50 0.380378 GCAAAGAAACTGTGCGTCCA 59.620 50.000 0.00 0.00 34.87 4.02
50 51 1.202245 GCAAAGAAACTGTGCGTCCAA 60.202 47.619 0.00 0.00 34.87 3.53
51 52 2.719798 CAAAGAAACTGTGCGTCCAAG 58.280 47.619 0.00 0.00 0.00 3.61
52 53 0.663153 AAGAAACTGTGCGTCCAAGC 59.337 50.000 0.00 0.00 37.71 4.01
53 54 0.463654 AGAAACTGTGCGTCCAAGCA 60.464 50.000 0.00 0.00 45.96 3.91
59 60 4.361253 TGCGTCCAAGCAAGTCTC 57.639 55.556 0.00 0.00 45.06 3.36
60 61 1.664649 TGCGTCCAAGCAAGTCTCG 60.665 57.895 0.00 0.00 45.06 4.04
61 62 3.016474 GCGTCCAAGCAAGTCTCGC 62.016 63.158 0.00 0.00 37.05 5.03
62 63 1.373497 CGTCCAAGCAAGTCTCGCT 60.373 57.895 0.00 0.00 42.98 4.93
70 71 3.782889 AGCAAGTCTCGCTTTTTGTTT 57.217 38.095 0.00 0.00 35.82 2.83
71 72 4.110036 AGCAAGTCTCGCTTTTTGTTTT 57.890 36.364 0.00 0.00 35.82 2.43
72 73 4.105486 AGCAAGTCTCGCTTTTTGTTTTC 58.895 39.130 0.00 0.00 35.82 2.29
73 74 4.105486 GCAAGTCTCGCTTTTTGTTTTCT 58.895 39.130 0.00 0.00 34.69 2.52
74 75 4.562789 GCAAGTCTCGCTTTTTGTTTTCTT 59.437 37.500 0.00 0.00 34.69 2.52
75 76 5.499176 GCAAGTCTCGCTTTTTGTTTTCTTG 60.499 40.000 0.00 0.00 34.69 3.02
76 77 4.105486 AGTCTCGCTTTTTGTTTTCTTGC 58.895 39.130 0.00 0.00 0.00 4.01
77 78 3.857093 GTCTCGCTTTTTGTTTTCTTGCA 59.143 39.130 0.00 0.00 0.00 4.08
78 79 4.326009 GTCTCGCTTTTTGTTTTCTTGCAA 59.674 37.500 0.00 0.00 0.00 4.08
79 80 4.926238 TCTCGCTTTTTGTTTTCTTGCAAA 59.074 33.333 0.00 0.00 33.40 3.68
80 81 5.406780 TCTCGCTTTTTGTTTTCTTGCAAAA 59.593 32.000 0.00 0.00 41.15 2.44
81 82 5.616658 TCGCTTTTTGTTTTCTTGCAAAAG 58.383 33.333 0.00 0.00 42.88 2.27
82 83 5.178438 TCGCTTTTTGTTTTCTTGCAAAAGT 59.822 32.000 0.00 0.00 42.88 2.66
83 84 5.504409 CGCTTTTTGTTTTCTTGCAAAAGTC 59.496 36.000 0.00 0.00 42.88 3.01
84 85 6.602179 GCTTTTTGTTTTCTTGCAAAAGTCT 58.398 32.000 0.00 0.00 42.88 3.24
85 86 7.411372 CGCTTTTTGTTTTCTTGCAAAAGTCTA 60.411 33.333 0.00 0.00 42.88 2.59
86 87 8.390354 GCTTTTTGTTTTCTTGCAAAAGTCTAT 58.610 29.630 0.00 0.00 42.88 1.98
87 88 9.693157 CTTTTTGTTTTCTTGCAAAAGTCTATG 57.307 29.630 0.00 0.00 42.88 2.23
88 89 8.994429 TTTTGTTTTCTTGCAAAAGTCTATGA 57.006 26.923 0.00 0.00 38.96 2.15
89 90 8.633075 TTTGTTTTCTTGCAAAAGTCTATGAG 57.367 30.769 0.00 0.00 32.46 2.90
90 91 7.566760 TGTTTTCTTGCAAAAGTCTATGAGA 57.433 32.000 0.00 0.00 0.00 3.27
91 92 7.417612 TGTTTTCTTGCAAAAGTCTATGAGAC 58.582 34.615 0.00 0.00 45.38 3.36
104 105 6.380095 GTCTATGAGACTTAGTAGGGTGTG 57.620 45.833 0.00 0.00 41.88 3.82
105 106 5.299782 GTCTATGAGACTTAGTAGGGTGTGG 59.700 48.000 0.00 0.00 41.88 4.17
106 107 2.176889 TGAGACTTAGTAGGGTGTGGC 58.823 52.381 0.00 0.00 0.00 5.01
107 108 2.225293 TGAGACTTAGTAGGGTGTGGCT 60.225 50.000 0.00 0.00 0.00 4.75
108 109 3.010920 TGAGACTTAGTAGGGTGTGGCTA 59.989 47.826 0.00 0.00 0.00 3.93
109 110 3.633065 GAGACTTAGTAGGGTGTGGCTAG 59.367 52.174 0.00 0.00 0.00 3.42
110 111 2.694109 GACTTAGTAGGGTGTGGCTAGG 59.306 54.545 0.00 0.00 0.00 3.02
111 112 2.044077 ACTTAGTAGGGTGTGGCTAGGT 59.956 50.000 0.00 0.00 0.00 3.08
112 113 2.449137 TAGTAGGGTGTGGCTAGGTC 57.551 55.000 0.00 0.00 0.00 3.85
113 114 0.683504 AGTAGGGTGTGGCTAGGTCG 60.684 60.000 0.00 0.00 0.00 4.79
114 115 0.682209 GTAGGGTGTGGCTAGGTCGA 60.682 60.000 0.00 0.00 0.00 4.20
115 116 0.260816 TAGGGTGTGGCTAGGTCGAT 59.739 55.000 0.00 0.00 0.00 3.59
116 117 1.144057 GGGTGTGGCTAGGTCGATG 59.856 63.158 0.00 0.00 0.00 3.84
117 118 1.144057 GGTGTGGCTAGGTCGATGG 59.856 63.158 0.00 0.00 0.00 3.51
118 119 1.614241 GGTGTGGCTAGGTCGATGGT 61.614 60.000 0.00 0.00 0.00 3.55
119 120 0.179108 GTGTGGCTAGGTCGATGGTC 60.179 60.000 0.00 0.00 0.00 4.02
120 121 0.324368 TGTGGCTAGGTCGATGGTCT 60.324 55.000 0.00 0.00 0.00 3.85
121 122 0.824759 GTGGCTAGGTCGATGGTCTT 59.175 55.000 0.00 0.00 0.00 3.01
122 123 1.112113 TGGCTAGGTCGATGGTCTTC 58.888 55.000 0.00 0.00 0.00 2.87
123 124 1.112113 GGCTAGGTCGATGGTCTTCA 58.888 55.000 0.00 0.00 0.00 3.02
124 125 1.202428 GGCTAGGTCGATGGTCTTCAC 60.202 57.143 0.00 0.00 0.00 3.18
125 126 1.751924 GCTAGGTCGATGGTCTTCACT 59.248 52.381 0.00 0.00 0.00 3.41
126 127 2.166664 GCTAGGTCGATGGTCTTCACTT 59.833 50.000 0.00 0.00 0.00 3.16
127 128 3.368531 GCTAGGTCGATGGTCTTCACTTT 60.369 47.826 0.00 0.00 0.00 2.66
128 129 3.320673 AGGTCGATGGTCTTCACTTTC 57.679 47.619 0.00 0.00 0.00 2.62
129 130 2.632996 AGGTCGATGGTCTTCACTTTCA 59.367 45.455 0.00 0.00 0.00 2.69
130 131 3.071023 AGGTCGATGGTCTTCACTTTCAA 59.929 43.478 0.00 0.00 0.00 2.69
131 132 3.186613 GGTCGATGGTCTTCACTTTCAAC 59.813 47.826 0.00 0.00 0.00 3.18
132 133 3.057019 TCGATGGTCTTCACTTTCAACG 58.943 45.455 0.00 0.00 0.00 4.10
133 134 3.057019 CGATGGTCTTCACTTTCAACGA 58.943 45.455 0.00 0.00 0.00 3.85
134 135 3.121944 CGATGGTCTTCACTTTCAACGAG 59.878 47.826 0.00 0.00 0.00 4.18
135 136 3.812156 TGGTCTTCACTTTCAACGAGA 57.188 42.857 0.00 0.00 0.00 4.04
136 137 4.336889 TGGTCTTCACTTTCAACGAGAT 57.663 40.909 0.00 0.00 0.00 2.75
137 138 4.703897 TGGTCTTCACTTTCAACGAGATT 58.296 39.130 0.00 0.00 0.00 2.40
138 139 5.123227 TGGTCTTCACTTTCAACGAGATTT 58.877 37.500 0.00 0.00 0.00 2.17
139 140 5.588648 TGGTCTTCACTTTCAACGAGATTTT 59.411 36.000 0.00 0.00 0.00 1.82
140 141 5.909610 GGTCTTCACTTTCAACGAGATTTTG 59.090 40.000 0.00 0.00 0.00 2.44
141 142 6.238374 GGTCTTCACTTTCAACGAGATTTTGA 60.238 38.462 0.00 0.00 0.00 2.69
142 143 7.355778 GTCTTCACTTTCAACGAGATTTTGAT 58.644 34.615 0.00 0.00 33.03 2.57
143 144 7.322222 GTCTTCACTTTCAACGAGATTTTGATG 59.678 37.037 0.00 0.00 33.03 3.07
144 145 6.859420 TCACTTTCAACGAGATTTTGATGA 57.141 33.333 0.00 0.00 33.03 2.92
145 146 7.258022 TCACTTTCAACGAGATTTTGATGAA 57.742 32.000 0.00 0.00 33.03 2.57
146 147 7.702386 TCACTTTCAACGAGATTTTGATGAAA 58.298 30.769 8.18 8.18 37.23 2.69
147 148 7.643764 TCACTTTCAACGAGATTTTGATGAAAC 59.356 33.333 5.18 0.00 35.66 2.78
148 149 7.645340 CACTTTCAACGAGATTTTGATGAAACT 59.355 33.333 5.18 0.00 35.66 2.66
149 150 7.857885 ACTTTCAACGAGATTTTGATGAAACTC 59.142 33.333 5.18 0.00 35.66 3.01
150 151 6.859420 TCAACGAGATTTTGATGAAACTCA 57.141 33.333 0.00 0.00 31.46 3.41
151 152 6.658831 TCAACGAGATTTTGATGAAACTCAC 58.341 36.000 0.00 0.00 31.46 3.51
152 153 6.483307 TCAACGAGATTTTGATGAAACTCACT 59.517 34.615 0.00 0.00 31.46 3.41
153 154 6.233430 ACGAGATTTTGATGAAACTCACTG 57.767 37.500 0.00 0.00 31.46 3.66
154 155 5.991606 ACGAGATTTTGATGAAACTCACTGA 59.008 36.000 0.00 0.00 31.46 3.41
155 156 6.483307 ACGAGATTTTGATGAAACTCACTGAA 59.517 34.615 0.00 0.00 31.46 3.02
156 157 7.173907 ACGAGATTTTGATGAAACTCACTGAAT 59.826 33.333 0.00 0.00 31.46 2.57
157 158 8.019669 CGAGATTTTGATGAAACTCACTGAATT 58.980 33.333 0.00 0.00 31.46 2.17
158 159 9.688592 GAGATTTTGATGAAACTCACTGAATTT 57.311 29.630 0.00 0.00 31.46 1.82
159 160 9.688592 AGATTTTGATGAAACTCACTGAATTTC 57.311 29.630 6.10 6.10 33.75 2.17
160 161 9.467258 GATTTTGATGAAACTCACTGAATTTCA 57.533 29.630 15.91 15.91 44.18 2.69
178 179 9.778741 TGAATTTCAGTAATTTCAGTAGACACT 57.221 29.630 0.00 0.00 36.59 3.55
195 196 7.980099 AGTAGACACTGAAATATTTACCTTCCG 59.020 37.037 0.00 0.00 32.25 4.30
196 197 6.113411 AGACACTGAAATATTTACCTTCCGG 58.887 40.000 0.00 0.00 0.00 5.14
197 198 4.638865 ACACTGAAATATTTACCTTCCGGC 59.361 41.667 0.00 0.00 0.00 6.13
198 199 4.036380 CACTGAAATATTTACCTTCCGGCC 59.964 45.833 0.00 0.00 0.00 6.13
199 200 4.204012 CTGAAATATTTACCTTCCGGCCA 58.796 43.478 2.24 0.00 0.00 5.36
200 201 4.601084 TGAAATATTTACCTTCCGGCCAA 58.399 39.130 2.24 0.00 0.00 4.52
201 202 5.017490 TGAAATATTTACCTTCCGGCCAAA 58.983 37.500 2.24 0.00 0.00 3.28
202 203 5.480772 TGAAATATTTACCTTCCGGCCAAAA 59.519 36.000 2.24 0.00 0.00 2.44
203 204 6.155393 TGAAATATTTACCTTCCGGCCAAAAT 59.845 34.615 2.24 1.09 0.00 1.82
204 205 3.885724 ATTTACCTTCCGGCCAAAATG 57.114 42.857 2.24 0.00 0.00 2.32
205 206 2.296073 TTACCTTCCGGCCAAAATGT 57.704 45.000 2.24 1.82 0.00 2.71
206 207 2.296073 TACCTTCCGGCCAAAATGTT 57.704 45.000 2.24 0.00 0.00 2.71
207 208 1.419381 ACCTTCCGGCCAAAATGTTT 58.581 45.000 2.24 0.00 0.00 2.83
208 209 1.343142 ACCTTCCGGCCAAAATGTTTC 59.657 47.619 2.24 0.00 0.00 2.78
209 210 1.342819 CCTTCCGGCCAAAATGTTTCA 59.657 47.619 2.24 0.00 0.00 2.69
210 211 2.403259 CTTCCGGCCAAAATGTTTCAC 58.597 47.619 2.24 0.00 0.00 3.18
211 212 0.676736 TCCGGCCAAAATGTTTCACC 59.323 50.000 2.24 0.00 0.00 4.02
212 213 0.390860 CCGGCCAAAATGTTTCACCA 59.609 50.000 2.24 0.00 0.00 4.17
213 214 1.202580 CCGGCCAAAATGTTTCACCAA 60.203 47.619 2.24 0.00 0.00 3.67
214 215 2.549778 CCGGCCAAAATGTTTCACCAAT 60.550 45.455 2.24 0.00 0.00 3.16
215 216 3.137533 CGGCCAAAATGTTTCACCAATT 58.862 40.909 2.24 0.00 0.00 2.32
216 217 3.563390 CGGCCAAAATGTTTCACCAATTT 59.437 39.130 2.24 0.00 0.00 1.82
217 218 4.319405 CGGCCAAAATGTTTCACCAATTTC 60.319 41.667 2.24 0.00 0.00 2.17
218 219 4.578105 GGCCAAAATGTTTCACCAATTTCA 59.422 37.500 0.00 0.00 0.00 2.69
219 220 5.277925 GGCCAAAATGTTTCACCAATTTCAG 60.278 40.000 0.00 0.00 0.00 3.02
220 221 5.296531 GCCAAAATGTTTCACCAATTTCAGT 59.703 36.000 0.00 0.00 0.00 3.41
221 222 6.481644 GCCAAAATGTTTCACCAATTTCAGTA 59.518 34.615 0.00 0.00 0.00 2.74
222 223 7.011857 GCCAAAATGTTTCACCAATTTCAGTAA 59.988 33.333 0.00 0.00 0.00 2.24
223 224 9.054922 CCAAAATGTTTCACCAATTTCAGTAAT 57.945 29.630 0.00 0.00 0.00 1.89
227 228 9.691362 AATGTTTCACCAATTTCAGTAATACAC 57.309 29.630 0.00 0.00 0.00 2.90
228 229 8.226819 TGTTTCACCAATTTCAGTAATACACA 57.773 30.769 0.00 0.00 0.00 3.72
229 230 8.349245 TGTTTCACCAATTTCAGTAATACACAG 58.651 33.333 0.00 0.00 0.00 3.66
230 231 7.447374 TTCACCAATTTCAGTAATACACAGG 57.553 36.000 0.00 0.00 0.00 4.00
231 232 6.774673 TCACCAATTTCAGTAATACACAGGA 58.225 36.000 0.00 0.00 0.00 3.86
232 233 7.227873 TCACCAATTTCAGTAATACACAGGAA 58.772 34.615 0.00 0.00 0.00 3.36
233 234 7.888021 TCACCAATTTCAGTAATACACAGGAAT 59.112 33.333 0.00 0.00 0.00 3.01
234 235 8.522830 CACCAATTTCAGTAATACACAGGAATT 58.477 33.333 0.00 0.00 0.00 2.17
235 236 8.739972 ACCAATTTCAGTAATACACAGGAATTC 58.260 33.333 0.00 0.00 0.00 2.17
236 237 8.739039 CCAATTTCAGTAATACACAGGAATTCA 58.261 33.333 7.93 0.00 0.00 2.57
240 241 8.684386 TTCAGTAATACACAGGAATTCAAACA 57.316 30.769 7.93 0.00 0.00 2.83
241 242 8.862325 TCAGTAATACACAGGAATTCAAACAT 57.138 30.769 7.93 0.00 0.00 2.71
242 243 9.295825 TCAGTAATACACAGGAATTCAAACATT 57.704 29.630 7.93 1.87 0.00 2.71
243 244 9.912634 CAGTAATACACAGGAATTCAAACATTT 57.087 29.630 7.93 0.00 0.00 2.32
247 248 9.829507 AATACACAGGAATTCAAACATTTTTCA 57.170 25.926 7.93 0.00 0.00 2.69
248 249 9.829507 ATACACAGGAATTCAAACATTTTTCAA 57.170 25.926 7.93 0.00 0.00 2.69
249 250 8.558973 ACACAGGAATTCAAACATTTTTCAAA 57.441 26.923 7.93 0.00 0.00 2.69
250 251 9.007901 ACACAGGAATTCAAACATTTTTCAAAA 57.992 25.926 7.93 0.00 0.00 2.44
251 252 9.493206 CACAGGAATTCAAACATTTTTCAAAAG 57.507 29.630 7.93 0.00 0.00 2.27
252 253 9.230122 ACAGGAATTCAAACATTTTTCAAAAGT 57.770 25.926 7.93 0.00 0.00 2.66
253 254 9.706846 CAGGAATTCAAACATTTTTCAAAAGTC 57.293 29.630 7.93 0.00 0.00 3.01
254 255 8.892723 AGGAATTCAAACATTTTTCAAAAGTCC 58.107 29.630 7.93 0.00 30.35 3.85
255 256 8.672815 GGAATTCAAACATTTTTCAAAAGTCCA 58.327 29.630 7.93 0.00 30.50 4.02
290 291 8.721019 TTGAATTCAAATGAATATTTCAGCCC 57.279 30.769 18.45 0.00 43.41 5.19
291 292 8.081517 TGAATTCAAATGAATATTTCAGCCCT 57.918 30.769 5.45 0.00 43.41 5.19
292 293 8.199449 TGAATTCAAATGAATATTTCAGCCCTC 58.801 33.333 5.45 0.87 43.41 4.30
293 294 7.909485 ATTCAAATGAATATTTCAGCCCTCT 57.091 32.000 6.85 0.00 43.98 3.69
294 295 6.704289 TCAAATGAATATTTCAGCCCTCTG 57.296 37.500 0.00 0.00 43.98 3.35
295 296 5.595542 TCAAATGAATATTTCAGCCCTCTGG 59.404 40.000 0.00 0.00 43.98 3.86
296 297 4.343239 AAATGAATATTTCAGCCCTCTGGC 59.657 41.667 0.00 0.00 46.01 4.85
297 298 6.682604 AAATGAATATTTCAGCCCTCTGGCC 61.683 44.000 0.00 0.00 44.87 5.36
315 316 3.782889 GCCGAAATGCCTACTGAAATT 57.217 42.857 0.00 0.00 0.00 1.82
316 317 3.438360 GCCGAAATGCCTACTGAAATTG 58.562 45.455 0.00 0.00 0.00 2.32
317 318 3.128589 GCCGAAATGCCTACTGAAATTGA 59.871 43.478 0.00 0.00 0.00 2.57
318 319 4.380444 GCCGAAATGCCTACTGAAATTGAA 60.380 41.667 0.00 0.00 0.00 2.69
319 320 5.708948 CCGAAATGCCTACTGAAATTGAAA 58.291 37.500 0.00 0.00 0.00 2.69
320 321 6.155827 CCGAAATGCCTACTGAAATTGAAAA 58.844 36.000 0.00 0.00 0.00 2.29
321 322 6.089417 CCGAAATGCCTACTGAAATTGAAAAC 59.911 38.462 0.00 0.00 0.00 2.43
322 323 6.089417 CGAAATGCCTACTGAAATTGAAAACC 59.911 38.462 0.00 0.00 0.00 3.27
323 324 6.418057 AATGCCTACTGAAATTGAAAACCA 57.582 33.333 0.00 0.00 0.00 3.67
324 325 6.610075 ATGCCTACTGAAATTGAAAACCAT 57.390 33.333 0.00 0.00 0.00 3.55
325 326 5.782047 TGCCTACTGAAATTGAAAACCATG 58.218 37.500 0.00 0.00 0.00 3.66
326 327 4.627035 GCCTACTGAAATTGAAAACCATGC 59.373 41.667 0.00 0.00 0.00 4.06
327 328 5.170748 CCTACTGAAATTGAAAACCATGCC 58.829 41.667 0.00 0.00 0.00 4.40
328 329 4.961438 ACTGAAATTGAAAACCATGCCT 57.039 36.364 0.00 0.00 0.00 4.75
329 330 6.152661 CCTACTGAAATTGAAAACCATGCCTA 59.847 38.462 0.00 0.00 0.00 3.93
330 331 6.029346 ACTGAAATTGAAAACCATGCCTAG 57.971 37.500 0.00 0.00 0.00 3.02
331 332 5.047092 ACTGAAATTGAAAACCATGCCTAGG 60.047 40.000 3.67 3.67 0.00 3.02
332 333 4.837860 TGAAATTGAAAACCATGCCTAGGT 59.162 37.500 11.31 0.00 42.34 3.08
333 334 5.047377 TGAAATTGAAAACCATGCCTAGGTC 60.047 40.000 11.31 3.32 38.76 3.85
334 335 3.806949 TTGAAAACCATGCCTAGGTCT 57.193 42.857 11.31 0.00 38.76 3.85
335 336 3.350219 TGAAAACCATGCCTAGGTCTC 57.650 47.619 11.31 0.00 38.76 3.36
336 337 2.642311 TGAAAACCATGCCTAGGTCTCA 59.358 45.455 11.31 0.00 38.76 3.27
337 338 3.274288 GAAAACCATGCCTAGGTCTCAG 58.726 50.000 11.31 0.00 38.76 3.35
338 339 1.958288 AACCATGCCTAGGTCTCAGT 58.042 50.000 11.31 0.00 38.76 3.41
339 340 1.490574 ACCATGCCTAGGTCTCAGTC 58.509 55.000 11.31 0.00 32.90 3.51
340 341 0.387202 CCATGCCTAGGTCTCAGTCG 59.613 60.000 11.31 0.00 0.00 4.18
341 342 1.393603 CATGCCTAGGTCTCAGTCGA 58.606 55.000 11.31 0.00 0.00 4.20
342 343 1.066303 CATGCCTAGGTCTCAGTCGAC 59.934 57.143 11.31 7.70 0.00 4.20
343 344 0.328592 TGCCTAGGTCTCAGTCGACT 59.671 55.000 13.58 13.58 34.38 4.18
344 345 0.736053 GCCTAGGTCTCAGTCGACTG 59.264 60.000 34.76 34.76 45.08 3.51
357 358 5.769967 CAGTCGACTGAGATTTAACCAAG 57.230 43.478 36.73 7.53 46.59 3.61
358 359 5.230942 CAGTCGACTGAGATTTAACCAAGT 58.769 41.667 36.73 0.00 46.59 3.16
359 360 5.346281 CAGTCGACTGAGATTTAACCAAGTC 59.654 44.000 36.73 0.00 46.59 3.01
360 361 5.244178 AGTCGACTGAGATTTAACCAAGTCT 59.756 40.000 19.30 0.00 33.74 3.24
361 362 5.573669 GTCGACTGAGATTTAACCAAGTCTC 59.426 44.000 8.70 3.67 44.01 3.36
366 367 6.419484 TGAGATTTAACCAAGTCTCAGTCA 57.581 37.500 8.09 0.00 46.61 3.41
367 368 6.826668 TGAGATTTAACCAAGTCTCAGTCAA 58.173 36.000 8.09 0.00 46.61 3.18
368 369 7.279615 TGAGATTTAACCAAGTCTCAGTCAAA 58.720 34.615 8.09 0.00 46.61 2.69
369 370 7.939039 TGAGATTTAACCAAGTCTCAGTCAAAT 59.061 33.333 8.09 0.00 46.61 2.32
370 371 9.436957 GAGATTTAACCAAGTCTCAGTCAAATA 57.563 33.333 5.36 0.00 43.50 1.40
371 372 9.793259 AGATTTAACCAAGTCTCAGTCAAATAA 57.207 29.630 0.00 0.00 0.00 1.40
372 373 9.827411 GATTTAACCAAGTCTCAGTCAAATAAC 57.173 33.333 0.00 0.00 0.00 1.89
373 374 8.740123 TTTAACCAAGTCTCAGTCAAATAACA 57.260 30.769 0.00 0.00 0.00 2.41
374 375 8.918202 TTAACCAAGTCTCAGTCAAATAACAT 57.082 30.769 0.00 0.00 0.00 2.71
376 377 7.907214 ACCAAGTCTCAGTCAAATAACATAC 57.093 36.000 0.00 0.00 0.00 2.39
377 378 7.680730 ACCAAGTCTCAGTCAAATAACATACT 58.319 34.615 0.00 0.00 0.00 2.12
378 379 8.157476 ACCAAGTCTCAGTCAAATAACATACTT 58.843 33.333 0.00 0.00 0.00 2.24
379 380 9.653287 CCAAGTCTCAGTCAAATAACATACTTA 57.347 33.333 0.00 0.00 0.00 2.24
420 421 9.995003 AAAACCAATAAGAAAATTATGCACAGA 57.005 25.926 0.00 0.00 0.00 3.41
459 460 9.688091 ATCTTAAGGATATAGCATCGACTAAGA 57.312 33.333 1.85 0.00 32.04 2.10
460 461 8.948145 TCTTAAGGATATAGCATCGACTAAGAC 58.052 37.037 1.85 0.00 0.00 3.01
461 462 8.865420 TTAAGGATATAGCATCGACTAAGACT 57.135 34.615 0.00 0.00 0.00 3.24
462 463 7.768807 AAGGATATAGCATCGACTAAGACTT 57.231 36.000 0.00 0.00 0.00 3.01
463 464 8.865420 AAGGATATAGCATCGACTAAGACTTA 57.135 34.615 0.00 0.00 0.00 2.24
464 465 8.500753 AGGATATAGCATCGACTAAGACTTAG 57.499 38.462 18.80 18.80 39.18 2.18
466 467 9.381033 GGATATAGCATCGACTAAGACTTAGTA 57.619 37.037 24.51 12.92 46.01 1.82
468 469 9.947433 ATATAGCATCGACTAAGACTTAGTAGT 57.053 33.333 24.51 13.66 46.01 2.73
470 471 7.718272 AGCATCGACTAAGACTTAGTAGTAG 57.282 40.000 24.51 20.02 46.01 2.57
471 472 7.274447 AGCATCGACTAAGACTTAGTAGTAGT 58.726 38.462 24.51 13.55 46.01 2.73
472 473 8.420222 AGCATCGACTAAGACTTAGTAGTAGTA 58.580 37.037 24.51 11.21 46.01 1.82
473 474 9.039870 GCATCGACTAAGACTTAGTAGTAGTAA 57.960 37.037 24.51 10.90 46.01 2.24
476 477 9.929180 TCGACTAAGACTTAGTAGTAGTAACAA 57.071 33.333 24.51 6.52 46.01 2.83
503 504 7.941790 AGAGAAAAAGGAAAACTAAGATCAGCT 59.058 33.333 0.00 0.00 0.00 4.24
544 545 3.335579 CTGTACCAAGCCAACTAAGGAC 58.664 50.000 0.00 0.00 0.00 3.85
546 547 1.145571 ACCAAGCCAACTAAGGACCA 58.854 50.000 0.00 0.00 0.00 4.02
555 556 4.770531 GCCAACTAAGGACCAAATTTAGGT 59.229 41.667 10.81 10.81 43.46 3.08
610 611 2.135139 CATGTGTGTTGTCTACGCTGT 58.865 47.619 0.00 0.00 38.12 4.40
613 614 0.179097 TGTGTTGTCTACGCTGTGCA 60.179 50.000 0.00 0.00 38.12 4.57
614 615 0.934496 GTGTTGTCTACGCTGTGCAA 59.066 50.000 0.00 0.00 34.37 4.08
615 616 1.070577 GTGTTGTCTACGCTGTGCAAG 60.071 52.381 0.00 0.00 34.37 4.01
617 618 2.223852 TGTTGTCTACGCTGTGCAAGTA 60.224 45.455 0.00 0.00 0.00 2.24
618 619 2.993899 GTTGTCTACGCTGTGCAAGTAT 59.006 45.455 0.00 0.00 0.00 2.12
619 620 2.876091 TGTCTACGCTGTGCAAGTATC 58.124 47.619 0.00 0.00 0.00 2.24
620 621 2.492088 TGTCTACGCTGTGCAAGTATCT 59.508 45.455 0.00 0.00 0.00 1.98
624 625 5.004535 GTCTACGCTGTGCAAGTATCTAAAC 59.995 44.000 0.00 0.00 0.00 2.01
625 626 3.659786 ACGCTGTGCAAGTATCTAAACA 58.340 40.909 0.00 0.00 0.00 2.83
627 628 4.084013 ACGCTGTGCAAGTATCTAAACAAC 60.084 41.667 0.00 0.00 0.00 3.32
628 629 4.152402 CGCTGTGCAAGTATCTAAACAACT 59.848 41.667 0.00 0.00 0.00 3.16
631 632 6.312399 TGTGCAAGTATCTAAACAACTTGG 57.688 37.500 14.29 0.04 46.50 3.61
632 633 5.240623 TGTGCAAGTATCTAAACAACTTGGG 59.759 40.000 14.29 0.00 46.50 4.12
633 634 4.764823 TGCAAGTATCTAAACAACTTGGGG 59.235 41.667 14.29 0.00 46.50 4.96
634 635 4.765339 GCAAGTATCTAAACAACTTGGGGT 59.235 41.667 14.29 0.00 46.50 4.95
635 636 5.106277 GCAAGTATCTAAACAACTTGGGGTC 60.106 44.000 14.29 0.00 46.50 4.46
636 637 6.238648 CAAGTATCTAAACAACTTGGGGTCT 58.761 40.000 6.55 0.00 44.02 3.85
637 638 6.449830 AGTATCTAAACAACTTGGGGTCTT 57.550 37.500 0.00 0.00 0.00 3.01
638 639 6.238648 AGTATCTAAACAACTTGGGGTCTTG 58.761 40.000 0.00 0.00 0.00 3.02
639 640 4.513406 TCTAAACAACTTGGGGTCTTGT 57.487 40.909 0.00 0.00 0.00 3.16
640 641 4.862371 TCTAAACAACTTGGGGTCTTGTT 58.138 39.130 0.00 0.00 37.43 2.83
641 642 4.885325 TCTAAACAACTTGGGGTCTTGTTC 59.115 41.667 0.00 0.00 35.11 3.18
642 643 2.818751 ACAACTTGGGGTCTTGTTCA 57.181 45.000 0.00 0.00 0.00 3.18
643 644 3.094484 ACAACTTGGGGTCTTGTTCAA 57.906 42.857 0.00 0.00 0.00 2.69
644 645 3.436243 ACAACTTGGGGTCTTGTTCAAA 58.564 40.909 0.00 0.00 0.00 2.69
645 646 3.835395 ACAACTTGGGGTCTTGTTCAAAA 59.165 39.130 0.00 0.00 0.00 2.44
646 647 4.284746 ACAACTTGGGGTCTTGTTCAAAAA 59.715 37.500 0.00 0.00 0.00 1.94
708 725 0.386731 GATCCGTTTTGCAACCACCG 60.387 55.000 0.00 0.00 0.00 4.94
710 727 1.008995 CCGTTTTGCAACCACCGAG 60.009 57.895 0.00 0.00 0.00 4.63
874 914 2.824041 CAGGCGGTCAAATCCCCG 60.824 66.667 0.00 0.00 46.90 5.73
878 918 2.513897 CGGTCAAATCCCCGCTCC 60.514 66.667 0.00 0.00 37.43 4.70
879 919 2.124278 GGTCAAATCCCCGCTCCC 60.124 66.667 0.00 0.00 0.00 4.30
880 920 2.513897 GTCAAATCCCCGCTCCCG 60.514 66.667 0.00 0.00 0.00 5.14
909 949 0.807667 CGGGTCAATGGAGCGAGAAG 60.808 60.000 0.00 0.00 42.46 2.85
944 984 3.197265 CCAGCAAAAGAACCACCAAAAG 58.803 45.455 0.00 0.00 0.00 2.27
1021 1061 3.625897 CCACACCGCTCCTCCACA 61.626 66.667 0.00 0.00 0.00 4.17
1086 1134 1.971695 GCCGTCCACCCCAAGAAAG 60.972 63.158 0.00 0.00 0.00 2.62
1088 1136 1.971695 CGTCCACCCCAAGAAAGGC 60.972 63.158 0.00 0.00 0.00 4.35
1089 1137 1.152830 GTCCACCCCAAGAAAGGCA 59.847 57.895 0.00 0.00 0.00 4.75
1091 1139 1.065410 TCCACCCCAAGAAAGGCAGA 61.065 55.000 0.00 0.00 0.00 4.26
1098 1153 3.225940 CCCAAGAAAGGCAGAAGAAACT 58.774 45.455 0.00 0.00 0.00 2.66
1114 1169 1.842381 AACTGAGCGGGAAGGGAAGG 61.842 60.000 0.00 0.00 0.00 3.46
1119 1174 4.162690 CGGGAAGGGAAGGAGCGG 62.163 72.222 0.00 0.00 0.00 5.52
1330 1385 1.112113 GCTGGATGAACTACCTCCGA 58.888 55.000 0.00 0.00 36.33 4.55
1466 1539 1.374252 CGTCCGTCCCTGGTTTCTG 60.374 63.158 0.00 0.00 0.00 3.02
2090 2168 2.954611 GCACCCGGCAAAACTCTC 59.045 61.111 0.00 0.00 43.97 3.20
2110 2189 3.947626 TCTACAAAGCACAAAACGAAGC 58.052 40.909 0.00 0.00 0.00 3.86
2118 2197 2.287915 GCACAAAACGAAGCAAGAGAGA 59.712 45.455 0.00 0.00 0.00 3.10
2125 2204 1.405105 CGAAGCAAGAGAGAGAGGGAG 59.595 57.143 0.00 0.00 0.00 4.30
2235 2317 8.809468 TCTTGCCATATACTCCTACTAGTATG 57.191 38.462 2.33 0.51 41.63 2.39
2302 2387 4.497300 CAGGGTGGCAAAAATTGATAGTG 58.503 43.478 0.00 0.00 0.00 2.74
2304 2389 2.923020 GGTGGCAAAAATTGATAGTGCG 59.077 45.455 0.00 0.00 36.04 5.34
2310 2395 5.163754 GGCAAAAATTGATAGTGCGTACTCT 60.164 40.000 10.21 0.00 38.36 3.24
2314 2399 3.946308 TTGATAGTGCGTACTCTCTCG 57.054 47.619 10.21 0.00 38.36 4.04
2315 2400 3.175109 TGATAGTGCGTACTCTCTCGA 57.825 47.619 10.21 0.00 38.36 4.04
2316 2401 2.864946 TGATAGTGCGTACTCTCTCGAC 59.135 50.000 10.21 0.00 38.36 4.20
2317 2402 2.669300 TAGTGCGTACTCTCTCGACT 57.331 50.000 10.21 0.00 38.36 4.18
2318 2403 2.669300 AGTGCGTACTCTCTCGACTA 57.331 50.000 0.00 0.00 28.79 2.59
2319 2404 2.969990 AGTGCGTACTCTCTCGACTAA 58.030 47.619 0.00 0.00 28.79 2.24
2320 2405 3.533547 AGTGCGTACTCTCTCGACTAAT 58.466 45.455 0.00 0.00 28.79 1.73
2321 2406 3.556775 AGTGCGTACTCTCTCGACTAATC 59.443 47.826 0.00 0.00 28.79 1.75
2322 2407 3.556775 GTGCGTACTCTCTCGACTAATCT 59.443 47.826 0.00 0.00 0.00 2.40
2324 2409 5.233902 GTGCGTACTCTCTCGACTAATCTAA 59.766 44.000 0.00 0.00 0.00 2.10
2331 2496 7.332557 ACTCTCTCGACTAATCTAAGACAAGA 58.667 38.462 0.00 0.00 0.00 3.02
2338 2503 9.923143 TCGACTAATCTAAGACAAGAATTTTGA 57.077 29.630 7.18 0.00 0.00 2.69
2418 2588 4.675146 GCAGATGGTATTGTTTGATTGCGT 60.675 41.667 0.00 0.00 0.00 5.24
2585 2756 2.350772 GGCTGATCTTTTTGTGTGACGG 60.351 50.000 0.00 0.00 0.00 4.79
2590 2761 0.041312 CTTTTTGTGTGACGGCCGAG 60.041 55.000 35.90 10.85 0.00 4.63
2603 2774 1.741770 GCCGAGACAAAGGCGTCAT 60.742 57.895 0.00 0.00 44.22 3.06
2751 2923 2.366480 CTAGCTCTCAGGCGCTGCAT 62.366 60.000 7.64 0.00 37.05 3.96
2949 3121 4.228567 TGTGGCGCCTTCGTGTCA 62.229 61.111 29.70 11.87 38.14 3.58
2971 3143 0.655733 CGTCACGCAAAAAGGTCAGT 59.344 50.000 0.00 0.00 0.00 3.41
3047 3219 4.285260 GGTATTTAGGCCCTCGAGGAAATA 59.715 45.833 33.39 26.82 38.24 1.40
3056 3228 4.022676 GCCCTCGAGGAAATAAAAACAACA 60.023 41.667 33.39 0.00 38.24 3.33
3086 3258 5.353394 TCATCCATTTAGTAGTCACCACC 57.647 43.478 0.00 0.00 0.00 4.61
3181 3353 9.836864 TCCAGTTCATATTATATCCATGCATAC 57.163 33.333 0.00 0.00 0.00 2.39
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.662619 CAAGCCATGTGACGTGTGTT 59.337 50.000 3.87 0.00 0.00 3.32
1 2 1.785041 GCAAGCCATGTGACGTGTGT 61.785 55.000 3.87 0.00 0.00 3.72
2 3 1.081906 GCAAGCCATGTGACGTGTG 60.082 57.895 3.87 0.00 0.00 3.82
3 4 1.100463 TTGCAAGCCATGTGACGTGT 61.100 50.000 3.87 0.00 0.00 4.49
4 5 0.241749 ATTGCAAGCCATGTGACGTG 59.758 50.000 4.94 0.00 0.00 4.49
5 6 0.241749 CATTGCAAGCCATGTGACGT 59.758 50.000 4.94 0.00 0.00 4.34
6 7 0.241749 ACATTGCAAGCCATGTGACG 59.758 50.000 10.52 0.00 0.00 4.35
7 8 2.063266 CAACATTGCAAGCCATGTGAC 58.937 47.619 11.83 0.00 0.00 3.67
8 9 1.001068 CCAACATTGCAAGCCATGTGA 59.999 47.619 11.83 0.00 0.00 3.58
9 10 1.270412 ACCAACATTGCAAGCCATGTG 60.270 47.619 11.83 0.00 0.00 3.21
10 11 1.050204 ACCAACATTGCAAGCCATGT 58.950 45.000 4.94 5.99 0.00 3.21
11 12 1.434555 CACCAACATTGCAAGCCATG 58.565 50.000 4.94 0.05 0.00 3.66
12 13 0.320946 GCACCAACATTGCAAGCCAT 60.321 50.000 4.94 0.00 39.93 4.40
13 14 1.069427 GCACCAACATTGCAAGCCA 59.931 52.632 4.94 0.00 39.93 4.75
14 15 1.069427 TGCACCAACATTGCAAGCC 59.931 52.632 4.94 0.00 46.90 4.35
15 16 4.754570 TGCACCAACATTGCAAGC 57.245 50.000 4.94 1.03 46.90 4.01
19 20 3.001533 CAGTTTCTTTGCACCAACATTGC 59.998 43.478 0.00 0.00 40.63 3.56
20 21 4.033129 CACAGTTTCTTTGCACCAACATTG 59.967 41.667 0.00 0.00 0.00 2.82
21 22 4.183101 CACAGTTTCTTTGCACCAACATT 58.817 39.130 0.00 0.00 0.00 2.71
22 23 3.784338 CACAGTTTCTTTGCACCAACAT 58.216 40.909 0.00 0.00 0.00 2.71
23 24 2.673610 GCACAGTTTCTTTGCACCAACA 60.674 45.455 3.49 0.00 36.22 3.33
24 25 1.926510 GCACAGTTTCTTTGCACCAAC 59.073 47.619 3.49 0.00 36.22 3.77
25 26 1.468908 CGCACAGTTTCTTTGCACCAA 60.469 47.619 8.28 0.00 35.93 3.67
26 27 0.100325 CGCACAGTTTCTTTGCACCA 59.900 50.000 8.28 0.00 35.93 4.17
27 28 0.100503 ACGCACAGTTTCTTTGCACC 59.899 50.000 8.28 0.00 35.93 5.01
28 29 1.466855 GACGCACAGTTTCTTTGCAC 58.533 50.000 8.28 0.00 35.93 4.57
29 30 0.380378 GGACGCACAGTTTCTTTGCA 59.620 50.000 8.28 0.00 35.93 4.08
30 31 0.380378 TGGACGCACAGTTTCTTTGC 59.620 50.000 0.00 0.00 0.00 3.68
31 32 2.719798 CTTGGACGCACAGTTTCTTTG 58.280 47.619 0.00 0.00 0.00 2.77
32 33 1.065551 GCTTGGACGCACAGTTTCTTT 59.934 47.619 0.00 0.00 0.00 2.52
33 34 0.663153 GCTTGGACGCACAGTTTCTT 59.337 50.000 0.00 0.00 0.00 2.52
34 35 0.463654 TGCTTGGACGCACAGTTTCT 60.464 50.000 0.00 0.00 34.44 2.52
35 36 0.380378 TTGCTTGGACGCACAGTTTC 59.620 50.000 0.00 0.00 40.09 2.78
36 37 0.381801 CTTGCTTGGACGCACAGTTT 59.618 50.000 0.00 0.00 40.09 2.66
37 38 0.748005 ACTTGCTTGGACGCACAGTT 60.748 50.000 0.00 0.00 40.09 3.16
38 39 1.153168 ACTTGCTTGGACGCACAGT 60.153 52.632 0.00 0.00 40.09 3.55
39 40 0.882042 AGACTTGCTTGGACGCACAG 60.882 55.000 0.00 0.00 40.09 3.66
40 41 0.880278 GAGACTTGCTTGGACGCACA 60.880 55.000 0.00 0.00 40.09 4.57
41 42 1.862806 GAGACTTGCTTGGACGCAC 59.137 57.895 0.00 0.00 40.09 5.34
42 43 1.664649 CGAGACTTGCTTGGACGCA 60.665 57.895 0.00 0.00 38.31 5.24
43 44 3.016474 GCGAGACTTGCTTGGACGC 62.016 63.158 7.49 0.00 38.03 5.19
44 45 1.373497 AGCGAGACTTGCTTGGACG 60.373 57.895 11.72 0.00 40.48 4.79
45 46 4.683432 AGCGAGACTTGCTTGGAC 57.317 55.556 11.72 0.00 40.48 4.02
50 51 3.782889 AAACAAAAAGCGAGACTTGCT 57.217 38.095 11.72 11.72 46.68 3.91
51 52 4.105486 AGAAAACAAAAAGCGAGACTTGC 58.895 39.130 6.57 6.57 39.09 4.01
52 53 5.499176 GCAAGAAAACAAAAAGCGAGACTTG 60.499 40.000 0.00 0.00 39.09 3.16
53 54 4.562789 GCAAGAAAACAAAAAGCGAGACTT 59.437 37.500 0.00 0.00 41.70 3.01
54 55 4.105486 GCAAGAAAACAAAAAGCGAGACT 58.895 39.130 0.00 0.00 0.00 3.24
55 56 3.857093 TGCAAGAAAACAAAAAGCGAGAC 59.143 39.130 0.00 0.00 0.00 3.36
56 57 4.103365 TGCAAGAAAACAAAAAGCGAGA 57.897 36.364 0.00 0.00 0.00 4.04
57 58 4.838665 TTGCAAGAAAACAAAAAGCGAG 57.161 36.364 0.00 0.00 0.00 5.03
58 59 5.178438 ACTTTTGCAAGAAAACAAAAAGCGA 59.822 32.000 0.00 0.00 43.15 4.93
59 60 5.381477 ACTTTTGCAAGAAAACAAAAAGCG 58.619 33.333 0.00 0.00 43.15 4.68
60 61 6.602179 AGACTTTTGCAAGAAAACAAAAAGC 58.398 32.000 0.00 0.00 43.15 3.51
61 62 9.693157 CATAGACTTTTGCAAGAAAACAAAAAG 57.307 29.630 0.00 0.00 43.15 2.27
62 63 9.429359 TCATAGACTTTTGCAAGAAAACAAAAA 57.571 25.926 0.00 0.00 43.15 1.94
63 64 8.994429 TCATAGACTTTTGCAAGAAAACAAAA 57.006 26.923 0.00 0.00 41.97 2.44
64 65 8.465999 TCTCATAGACTTTTGCAAGAAAACAAA 58.534 29.630 0.00 0.00 34.11 2.83
65 66 7.915397 GTCTCATAGACTTTTGCAAGAAAACAA 59.085 33.333 0.00 0.00 41.88 2.83
66 67 7.417612 GTCTCATAGACTTTTGCAAGAAAACA 58.582 34.615 0.00 0.00 41.88 2.83
67 68 7.844070 GTCTCATAGACTTTTGCAAGAAAAC 57.156 36.000 0.00 0.00 41.88 2.43
81 82 5.299782 CCACACCCTACTAAGTCTCATAGAC 59.700 48.000 0.00 0.00 45.38 2.59
82 83 5.446860 CCACACCCTACTAAGTCTCATAGA 58.553 45.833 0.00 0.00 0.00 1.98
83 84 4.038162 GCCACACCCTACTAAGTCTCATAG 59.962 50.000 0.00 0.00 0.00 2.23
84 85 3.958798 GCCACACCCTACTAAGTCTCATA 59.041 47.826 0.00 0.00 0.00 2.15
85 86 2.766828 GCCACACCCTACTAAGTCTCAT 59.233 50.000 0.00 0.00 0.00 2.90
86 87 2.176889 GCCACACCCTACTAAGTCTCA 58.823 52.381 0.00 0.00 0.00 3.27
87 88 2.458620 AGCCACACCCTACTAAGTCTC 58.541 52.381 0.00 0.00 0.00 3.36
88 89 2.625282 AGCCACACCCTACTAAGTCT 57.375 50.000 0.00 0.00 0.00 3.24
89 90 2.694109 CCTAGCCACACCCTACTAAGTC 59.306 54.545 0.00 0.00 0.00 3.01
90 91 2.044077 ACCTAGCCACACCCTACTAAGT 59.956 50.000 0.00 0.00 0.00 2.24
91 92 2.694109 GACCTAGCCACACCCTACTAAG 59.306 54.545 0.00 0.00 0.00 2.18
92 93 2.743553 GACCTAGCCACACCCTACTAA 58.256 52.381 0.00 0.00 0.00 2.24
93 94 1.409241 CGACCTAGCCACACCCTACTA 60.409 57.143 0.00 0.00 0.00 1.82
94 95 0.683504 CGACCTAGCCACACCCTACT 60.684 60.000 0.00 0.00 0.00 2.57
95 96 0.682209 TCGACCTAGCCACACCCTAC 60.682 60.000 0.00 0.00 0.00 3.18
96 97 0.260816 ATCGACCTAGCCACACCCTA 59.739 55.000 0.00 0.00 0.00 3.53
97 98 1.001760 ATCGACCTAGCCACACCCT 59.998 57.895 0.00 0.00 0.00 4.34
98 99 1.144057 CATCGACCTAGCCACACCC 59.856 63.158 0.00 0.00 0.00 4.61
99 100 1.144057 CCATCGACCTAGCCACACC 59.856 63.158 0.00 0.00 0.00 4.16
100 101 0.179108 GACCATCGACCTAGCCACAC 60.179 60.000 0.00 0.00 0.00 3.82
101 102 0.324368 AGACCATCGACCTAGCCACA 60.324 55.000 0.00 0.00 0.00 4.17
102 103 0.824759 AAGACCATCGACCTAGCCAC 59.175 55.000 0.00 0.00 0.00 5.01
103 104 1.112113 GAAGACCATCGACCTAGCCA 58.888 55.000 0.00 0.00 0.00 4.75
104 105 1.112113 TGAAGACCATCGACCTAGCC 58.888 55.000 0.00 0.00 0.00 3.93
105 106 1.751924 AGTGAAGACCATCGACCTAGC 59.248 52.381 0.00 0.00 0.00 3.42
106 107 4.082190 TGAAAGTGAAGACCATCGACCTAG 60.082 45.833 0.00 0.00 0.00 3.02
107 108 3.830178 TGAAAGTGAAGACCATCGACCTA 59.170 43.478 0.00 0.00 0.00 3.08
108 109 2.632996 TGAAAGTGAAGACCATCGACCT 59.367 45.455 0.00 0.00 0.00 3.85
109 110 3.040147 TGAAAGTGAAGACCATCGACC 57.960 47.619 0.00 0.00 0.00 4.79
110 111 3.120991 CGTTGAAAGTGAAGACCATCGAC 60.121 47.826 0.00 0.00 0.00 4.20
111 112 3.057019 CGTTGAAAGTGAAGACCATCGA 58.943 45.455 0.00 0.00 0.00 3.59
112 113 3.057019 TCGTTGAAAGTGAAGACCATCG 58.943 45.455 0.00 0.00 0.00 3.84
113 114 4.307432 TCTCGTTGAAAGTGAAGACCATC 58.693 43.478 0.00 0.00 0.00 3.51
114 115 4.336889 TCTCGTTGAAAGTGAAGACCAT 57.663 40.909 0.00 0.00 0.00 3.55
115 116 3.812156 TCTCGTTGAAAGTGAAGACCA 57.188 42.857 0.00 0.00 0.00 4.02
116 117 5.674933 AAATCTCGTTGAAAGTGAAGACC 57.325 39.130 0.00 0.00 0.00 3.85
117 118 6.715464 TCAAAATCTCGTTGAAAGTGAAGAC 58.285 36.000 0.00 0.00 32.13 3.01
118 119 6.918892 TCAAAATCTCGTTGAAAGTGAAGA 57.081 33.333 0.00 0.00 32.13 2.87
119 120 7.355017 TCATCAAAATCTCGTTGAAAGTGAAG 58.645 34.615 0.00 0.00 38.44 3.02
120 121 7.258022 TCATCAAAATCTCGTTGAAAGTGAA 57.742 32.000 0.00 0.00 38.44 3.18
121 122 6.859420 TCATCAAAATCTCGTTGAAAGTGA 57.141 33.333 0.00 0.00 38.44 3.41
122 123 7.645340 AGTTTCATCAAAATCTCGTTGAAAGTG 59.355 33.333 0.00 0.00 38.44 3.16
123 124 7.707104 AGTTTCATCAAAATCTCGTTGAAAGT 58.293 30.769 0.00 0.00 38.44 2.66
124 125 7.857389 TGAGTTTCATCAAAATCTCGTTGAAAG 59.143 33.333 0.00 0.00 37.47 2.62
125 126 7.643764 GTGAGTTTCATCAAAATCTCGTTGAAA 59.356 33.333 0.00 0.00 37.47 2.69
126 127 7.012327 AGTGAGTTTCATCAAAATCTCGTTGAA 59.988 33.333 0.00 0.00 37.47 2.69
127 128 6.483307 AGTGAGTTTCATCAAAATCTCGTTGA 59.517 34.615 0.00 0.00 37.47 3.18
128 129 6.576313 CAGTGAGTTTCATCAAAATCTCGTTG 59.424 38.462 0.00 0.00 37.47 4.10
129 130 6.483307 TCAGTGAGTTTCATCAAAATCTCGTT 59.517 34.615 0.00 0.00 37.47 3.85
130 131 5.991606 TCAGTGAGTTTCATCAAAATCTCGT 59.008 36.000 0.00 0.00 37.47 4.18
131 132 6.471976 TCAGTGAGTTTCATCAAAATCTCG 57.528 37.500 0.00 0.00 37.47 4.04
132 133 9.688592 AAATTCAGTGAGTTTCATCAAAATCTC 57.311 29.630 7.74 0.00 37.47 2.75
133 134 9.688592 GAAATTCAGTGAGTTTCATCAAAATCT 57.311 29.630 27.16 0.00 37.91 2.40
134 135 9.467258 TGAAATTCAGTGAGTTTCATCAAAATC 57.533 29.630 29.57 10.53 41.13 2.17
135 136 9.472361 CTGAAATTCAGTGAGTTTCATCAAAAT 57.528 29.630 31.80 4.14 43.53 1.82
136 137 8.861033 CTGAAATTCAGTGAGTTTCATCAAAA 57.139 30.769 31.80 16.10 43.53 2.44
152 153 9.778741 AGTGTCTACTGAAATTACTGAAATTCA 57.221 29.630 0.00 0.00 34.62 2.57
169 170 7.980099 CGGAAGGTAAATATTTCAGTGTCTACT 59.020 37.037 3.39 0.00 37.75 2.57
170 171 8.128016 CGGAAGGTAAATATTTCAGTGTCTAC 57.872 38.462 3.39 0.00 0.00 2.59
190 191 2.403259 GTGAAACATTTTGGCCGGAAG 58.597 47.619 5.05 0.00 36.32 3.46
191 192 1.069358 GGTGAAACATTTTGGCCGGAA 59.931 47.619 5.05 0.00 39.98 4.30
192 193 0.676736 GGTGAAACATTTTGGCCGGA 59.323 50.000 5.05 0.00 39.98 5.14
193 194 0.390860 TGGTGAAACATTTTGGCCGG 59.609 50.000 0.00 0.00 39.98 6.13
194 195 2.231215 TTGGTGAAACATTTTGGCCG 57.769 45.000 0.00 0.00 39.98 6.13
195 196 4.578105 TGAAATTGGTGAAACATTTTGGCC 59.422 37.500 0.00 0.00 39.98 5.36
196 197 5.296531 ACTGAAATTGGTGAAACATTTTGGC 59.703 36.000 0.00 0.00 39.98 4.52
197 198 6.923928 ACTGAAATTGGTGAAACATTTTGG 57.076 33.333 0.00 0.00 39.98 3.28
201 202 9.691362 GTGTATTACTGAAATTGGTGAAACATT 57.309 29.630 0.00 0.00 39.98 2.71
202 203 8.855110 TGTGTATTACTGAAATTGGTGAAACAT 58.145 29.630 0.00 0.00 39.98 2.71
203 204 8.226819 TGTGTATTACTGAAATTGGTGAAACA 57.773 30.769 0.00 0.00 39.98 2.83
204 205 7.807907 CCTGTGTATTACTGAAATTGGTGAAAC 59.192 37.037 0.00 0.00 0.00 2.78
205 206 7.721842 TCCTGTGTATTACTGAAATTGGTGAAA 59.278 33.333 0.00 0.00 0.00 2.69
206 207 7.227873 TCCTGTGTATTACTGAAATTGGTGAA 58.772 34.615 0.00 0.00 0.00 3.18
207 208 6.774673 TCCTGTGTATTACTGAAATTGGTGA 58.225 36.000 0.00 0.00 0.00 4.02
208 209 7.447374 TTCCTGTGTATTACTGAAATTGGTG 57.553 36.000 0.00 0.00 0.00 4.17
209 210 8.650143 AATTCCTGTGTATTACTGAAATTGGT 57.350 30.769 0.00 0.00 0.00 3.67
210 211 8.739039 TGAATTCCTGTGTATTACTGAAATTGG 58.261 33.333 2.27 0.00 0.00 3.16
214 215 9.126151 TGTTTGAATTCCTGTGTATTACTGAAA 57.874 29.630 2.27 0.00 0.00 2.69
215 216 8.684386 TGTTTGAATTCCTGTGTATTACTGAA 57.316 30.769 2.27 0.00 0.00 3.02
216 217 8.862325 ATGTTTGAATTCCTGTGTATTACTGA 57.138 30.769 2.27 0.00 0.00 3.41
217 218 9.912634 AAATGTTTGAATTCCTGTGTATTACTG 57.087 29.630 2.27 0.00 0.00 2.74
221 222 9.829507 TGAAAAATGTTTGAATTCCTGTGTATT 57.170 25.926 2.27 0.00 0.00 1.89
222 223 9.829507 TTGAAAAATGTTTGAATTCCTGTGTAT 57.170 25.926 2.27 0.00 0.00 2.29
223 224 9.658799 TTTGAAAAATGTTTGAATTCCTGTGTA 57.341 25.926 2.27 0.00 0.00 2.90
224 225 8.558973 TTTGAAAAATGTTTGAATTCCTGTGT 57.441 26.923 2.27 0.00 0.00 3.72
225 226 9.493206 CTTTTGAAAAATGTTTGAATTCCTGTG 57.507 29.630 2.27 0.00 0.00 3.66
226 227 9.230122 ACTTTTGAAAAATGTTTGAATTCCTGT 57.770 25.926 2.27 0.00 0.00 4.00
227 228 9.706846 GACTTTTGAAAAATGTTTGAATTCCTG 57.293 29.630 2.27 0.00 0.00 3.86
228 229 8.892723 GGACTTTTGAAAAATGTTTGAATTCCT 58.107 29.630 2.27 0.00 0.00 3.36
229 230 8.672815 TGGACTTTTGAAAAATGTTTGAATTCC 58.327 29.630 2.27 0.00 0.00 3.01
264 265 9.333724 GGGCTGAAATATTCATTTGAATTCAAT 57.666 29.630 21.10 8.89 41.64 2.57
265 266 8.542080 AGGGCTGAAATATTCATTTGAATTCAA 58.458 29.630 16.91 16.91 41.64 2.69
266 267 8.081517 AGGGCTGAAATATTCATTTGAATTCA 57.918 30.769 10.81 3.38 41.64 2.57
267 268 8.419442 AGAGGGCTGAAATATTCATTTGAATTC 58.581 33.333 10.81 0.00 41.64 2.17
268 269 8.202137 CAGAGGGCTGAAATATTCATTTGAATT 58.798 33.333 10.81 0.00 45.17 2.17
269 270 7.201974 CCAGAGGGCTGAAATATTCATTTGAAT 60.202 37.037 10.42 10.42 45.17 2.57
270 271 6.097270 CCAGAGGGCTGAAATATTCATTTGAA 59.903 38.462 0.00 0.00 45.17 2.69
271 272 5.595542 CCAGAGGGCTGAAATATTCATTTGA 59.404 40.000 0.00 0.00 45.17 2.69
272 273 5.839621 CCAGAGGGCTGAAATATTCATTTG 58.160 41.667 0.00 0.00 45.17 2.32
295 296 3.128589 TCAATTTCAGTAGGCATTTCGGC 59.871 43.478 0.00 0.00 41.61 5.54
296 297 4.963276 TCAATTTCAGTAGGCATTTCGG 57.037 40.909 0.00 0.00 0.00 4.30
297 298 6.089417 GGTTTTCAATTTCAGTAGGCATTTCG 59.911 38.462 0.00 0.00 0.00 3.46
298 299 6.928492 TGGTTTTCAATTTCAGTAGGCATTTC 59.072 34.615 0.00 0.00 0.00 2.17
299 300 6.825610 TGGTTTTCAATTTCAGTAGGCATTT 58.174 32.000 0.00 0.00 0.00 2.32
300 301 6.418057 TGGTTTTCAATTTCAGTAGGCATT 57.582 33.333 0.00 0.00 0.00 3.56
301 302 6.400568 CATGGTTTTCAATTTCAGTAGGCAT 58.599 36.000 0.00 0.00 0.00 4.40
302 303 5.782047 CATGGTTTTCAATTTCAGTAGGCA 58.218 37.500 0.00 0.00 0.00 4.75
303 304 4.627035 GCATGGTTTTCAATTTCAGTAGGC 59.373 41.667 0.00 0.00 0.00 3.93
304 305 5.047092 AGGCATGGTTTTCAATTTCAGTAGG 60.047 40.000 0.00 0.00 0.00 3.18
305 306 6.029346 AGGCATGGTTTTCAATTTCAGTAG 57.971 37.500 0.00 0.00 0.00 2.57
306 307 6.152661 CCTAGGCATGGTTTTCAATTTCAGTA 59.847 38.462 0.00 0.00 0.00 2.74
307 308 4.961438 AGGCATGGTTTTCAATTTCAGT 57.039 36.364 0.00 0.00 0.00 3.41
308 309 5.047092 ACCTAGGCATGGTTTTCAATTTCAG 60.047 40.000 9.30 0.00 33.34 3.02
309 310 4.837860 ACCTAGGCATGGTTTTCAATTTCA 59.162 37.500 9.30 0.00 33.34 2.69
310 311 5.185828 AGACCTAGGCATGGTTTTCAATTTC 59.814 40.000 9.30 0.00 38.03 2.17
311 312 5.086621 AGACCTAGGCATGGTTTTCAATTT 58.913 37.500 9.30 0.00 38.03 1.82
312 313 4.677182 AGACCTAGGCATGGTTTTCAATT 58.323 39.130 9.30 0.00 38.03 2.32
313 314 4.263905 TGAGACCTAGGCATGGTTTTCAAT 60.264 41.667 9.30 0.00 38.03 2.57
314 315 3.073798 TGAGACCTAGGCATGGTTTTCAA 59.926 43.478 9.30 0.00 38.03 2.69
315 316 2.642311 TGAGACCTAGGCATGGTTTTCA 59.358 45.455 9.30 0.00 38.03 2.69
316 317 3.274288 CTGAGACCTAGGCATGGTTTTC 58.726 50.000 9.30 0.00 38.03 2.29
317 318 2.644798 ACTGAGACCTAGGCATGGTTTT 59.355 45.455 9.30 0.00 38.03 2.43
318 319 2.237392 GACTGAGACCTAGGCATGGTTT 59.763 50.000 9.30 0.00 38.03 3.27
319 320 1.834263 GACTGAGACCTAGGCATGGTT 59.166 52.381 9.30 0.00 38.03 3.67
320 321 1.490574 GACTGAGACCTAGGCATGGT 58.509 55.000 9.30 1.49 41.07 3.55
321 322 0.387202 CGACTGAGACCTAGGCATGG 59.613 60.000 9.30 0.00 0.00 3.66
322 323 1.066303 GTCGACTGAGACCTAGGCATG 59.934 57.143 9.30 0.00 35.22 4.06
323 324 1.064314 AGTCGACTGAGACCTAGGCAT 60.064 52.381 19.30 0.00 41.83 4.40
324 325 0.328592 AGTCGACTGAGACCTAGGCA 59.671 55.000 19.30 0.00 41.83 4.75
325 326 0.736053 CAGTCGACTGAGACCTAGGC 59.264 60.000 36.73 1.39 46.59 3.93
335 336 5.230942 ACTTGGTTAAATCTCAGTCGACTG 58.769 41.667 34.76 34.76 45.08 3.51
336 337 5.244178 AGACTTGGTTAAATCTCAGTCGACT 59.756 40.000 13.58 13.58 0.00 4.18
337 338 5.471257 AGACTTGGTTAAATCTCAGTCGAC 58.529 41.667 7.70 7.70 0.00 4.20
338 339 5.243060 TGAGACTTGGTTAAATCTCAGTCGA 59.757 40.000 0.00 0.00 41.99 4.20
339 340 5.470368 TGAGACTTGGTTAAATCTCAGTCG 58.530 41.667 0.00 0.00 41.99 4.18
343 344 6.419484 TGACTGAGACTTGGTTAAATCTCA 57.581 37.500 3.03 3.03 44.05 3.27
344 345 7.730364 TTTGACTGAGACTTGGTTAAATCTC 57.270 36.000 0.00 0.00 38.46 2.75
345 346 9.793259 TTATTTGACTGAGACTTGGTTAAATCT 57.207 29.630 11.70 0.00 33.47 2.40
346 347 9.827411 GTTATTTGACTGAGACTTGGTTAAATC 57.173 33.333 11.70 1.52 33.47 2.17
347 348 9.349713 TGTTATTTGACTGAGACTTGGTTAAAT 57.650 29.630 12.46 12.46 34.89 1.40
348 349 8.740123 TGTTATTTGACTGAGACTTGGTTAAA 57.260 30.769 0.00 0.00 0.00 1.52
349 350 8.918202 ATGTTATTTGACTGAGACTTGGTTAA 57.082 30.769 0.00 0.00 0.00 2.01
350 351 9.431887 GTATGTTATTTGACTGAGACTTGGTTA 57.568 33.333 0.00 0.00 0.00 2.85
351 352 8.157476 AGTATGTTATTTGACTGAGACTTGGTT 58.843 33.333 0.00 0.00 0.00 3.67
352 353 7.680730 AGTATGTTATTTGACTGAGACTTGGT 58.319 34.615 0.00 0.00 0.00 3.67
353 354 8.553459 AAGTATGTTATTTGACTGAGACTTGG 57.447 34.615 0.00 0.00 0.00 3.61
394 395 9.995003 TCTGTGCATAATTTTCTTATTGGTTTT 57.005 25.926 0.00 0.00 0.00 2.43
433 434 9.688091 TCTTAGTCGATGCTATATCCTTAAGAT 57.312 33.333 3.36 0.00 39.15 2.40
434 435 8.948145 GTCTTAGTCGATGCTATATCCTTAAGA 58.052 37.037 3.36 0.00 0.00 2.10
435 436 8.952278 AGTCTTAGTCGATGCTATATCCTTAAG 58.048 37.037 0.00 0.00 0.00 1.85
436 437 8.865420 AGTCTTAGTCGATGCTATATCCTTAA 57.135 34.615 0.00 0.00 0.00 1.85
437 438 8.865420 AAGTCTTAGTCGATGCTATATCCTTA 57.135 34.615 0.00 0.00 0.00 2.69
438 439 7.768807 AAGTCTTAGTCGATGCTATATCCTT 57.231 36.000 0.00 0.00 0.00 3.36
439 440 8.104566 ACTAAGTCTTAGTCGATGCTATATCCT 58.895 37.037 17.91 0.00 42.62 3.24
440 441 8.271312 ACTAAGTCTTAGTCGATGCTATATCC 57.729 38.462 17.91 0.00 42.62 2.59
442 443 9.947433 ACTACTAAGTCTTAGTCGATGCTATAT 57.053 33.333 25.21 3.01 44.90 0.86
444 445 9.426837 CTACTACTAAGTCTTAGTCGATGCTAT 57.573 37.037 25.21 7.92 44.90 2.97
445 446 8.420222 ACTACTACTAAGTCTTAGTCGATGCTA 58.580 37.037 25.21 8.38 44.90 3.49
446 447 7.274447 ACTACTACTAAGTCTTAGTCGATGCT 58.726 38.462 25.21 8.82 44.90 3.79
447 448 7.481275 ACTACTACTAAGTCTTAGTCGATGC 57.519 40.000 25.21 0.00 44.90 3.91
450 451 9.929180 TTGTTACTACTACTAAGTCTTAGTCGA 57.071 33.333 25.21 10.94 44.90 4.20
476 477 8.572185 GCTGATCTTAGTTTTCCTTTTTCTCTT 58.428 33.333 0.00 0.00 0.00 2.85
477 478 7.941790 AGCTGATCTTAGTTTTCCTTTTTCTCT 59.058 33.333 0.00 0.00 0.00 3.10
478 479 8.020244 CAGCTGATCTTAGTTTTCCTTTTTCTC 58.980 37.037 8.42 0.00 0.00 2.87
479 480 7.040132 CCAGCTGATCTTAGTTTTCCTTTTTCT 60.040 37.037 17.39 0.00 0.00 2.52
480 481 7.040409 TCCAGCTGATCTTAGTTTTCCTTTTTC 60.040 37.037 17.39 0.00 0.00 2.29
481 482 6.777580 TCCAGCTGATCTTAGTTTTCCTTTTT 59.222 34.615 17.39 0.00 0.00 1.94
482 483 6.207614 GTCCAGCTGATCTTAGTTTTCCTTTT 59.792 38.462 17.39 0.00 0.00 2.27
483 484 5.707764 GTCCAGCTGATCTTAGTTTTCCTTT 59.292 40.000 17.39 0.00 0.00 3.11
484 485 5.249420 GTCCAGCTGATCTTAGTTTTCCTT 58.751 41.667 17.39 0.00 0.00 3.36
485 486 4.621747 CGTCCAGCTGATCTTAGTTTTCCT 60.622 45.833 17.39 0.00 0.00 3.36
486 487 3.619038 CGTCCAGCTGATCTTAGTTTTCC 59.381 47.826 17.39 0.00 0.00 3.13
487 488 3.619038 CCGTCCAGCTGATCTTAGTTTTC 59.381 47.826 17.39 0.00 0.00 2.29
488 489 3.600388 CCGTCCAGCTGATCTTAGTTTT 58.400 45.455 17.39 0.00 0.00 2.43
489 490 2.678190 GCCGTCCAGCTGATCTTAGTTT 60.678 50.000 17.39 0.00 0.00 2.66
490 491 1.134670 GCCGTCCAGCTGATCTTAGTT 60.135 52.381 17.39 0.00 0.00 2.24
491 492 0.461961 GCCGTCCAGCTGATCTTAGT 59.538 55.000 17.39 0.00 0.00 2.24
492 493 0.749649 AGCCGTCCAGCTGATCTTAG 59.250 55.000 17.39 0.00 42.95 2.18
493 494 1.957177 CTAGCCGTCCAGCTGATCTTA 59.043 52.381 17.39 0.00 44.67 2.10
494 495 0.749649 CTAGCCGTCCAGCTGATCTT 59.250 55.000 17.39 0.00 44.67 2.40
495 496 0.396417 ACTAGCCGTCCAGCTGATCT 60.396 55.000 17.39 6.82 44.67 2.75
496 497 0.249238 CACTAGCCGTCCAGCTGATC 60.249 60.000 17.39 6.66 44.67 2.92
503 504 1.982395 CACCTCCACTAGCCGTCCA 60.982 63.158 0.00 0.00 0.00 4.02
539 540 6.954102 AGCATCTAAACCTAAATTTGGTCCTT 59.046 34.615 11.23 7.12 36.69 3.36
541 542 6.458342 CGAGCATCTAAACCTAAATTTGGTCC 60.458 42.308 11.23 0.00 36.69 4.46
544 545 6.487103 GTCGAGCATCTAAACCTAAATTTGG 58.513 40.000 0.00 0.00 0.00 3.28
546 547 6.035758 GTCGTCGAGCATCTAAACCTAAATTT 59.964 38.462 0.00 0.00 0.00 1.82
555 556 1.179152 TGGGTCGTCGAGCATCTAAA 58.821 50.000 24.40 1.62 0.00 1.85
583 584 5.454520 CGTAGACAACACACATGTACACTA 58.545 41.667 0.00 0.00 38.45 2.74
597 598 1.217882 ACTTGCACAGCGTAGACAAC 58.782 50.000 0.00 0.00 0.00 3.32
610 611 4.764823 CCCCAAGTTGTTTAGATACTTGCA 59.235 41.667 1.45 0.00 44.54 4.08
613 614 6.449830 AGACCCCAAGTTGTTTAGATACTT 57.550 37.500 1.45 0.00 32.60 2.24
614 615 6.183361 ACAAGACCCCAAGTTGTTTAGATACT 60.183 38.462 1.45 0.00 30.07 2.12
615 616 6.002082 ACAAGACCCCAAGTTGTTTAGATAC 58.998 40.000 1.45 0.00 30.07 2.24
617 618 5.061721 ACAAGACCCCAAGTTGTTTAGAT 57.938 39.130 1.45 0.00 30.07 1.98
618 619 4.513406 ACAAGACCCCAAGTTGTTTAGA 57.487 40.909 1.45 0.00 30.07 2.10
619 620 4.642885 TGAACAAGACCCCAAGTTGTTTAG 59.357 41.667 1.45 0.00 42.91 1.85
620 621 4.601084 TGAACAAGACCCCAAGTTGTTTA 58.399 39.130 1.45 0.00 42.91 2.01
624 625 4.464069 TTTTGAACAAGACCCCAAGTTG 57.536 40.909 0.00 0.00 0.00 3.16
643 644 4.452795 CCACCGAGTTTTGGTTTTGTTTTT 59.547 37.500 0.00 0.00 37.72 1.94
644 645 3.997681 CCACCGAGTTTTGGTTTTGTTTT 59.002 39.130 0.00 0.00 37.72 2.43
645 646 3.258622 TCCACCGAGTTTTGGTTTTGTTT 59.741 39.130 0.00 0.00 37.72 2.83
646 647 2.826725 TCCACCGAGTTTTGGTTTTGTT 59.173 40.909 0.00 0.00 37.72 2.83
647 648 2.425668 CTCCACCGAGTTTTGGTTTTGT 59.574 45.455 0.00 0.00 37.72 2.83
648 649 2.798145 GCTCCACCGAGTTTTGGTTTTG 60.798 50.000 0.00 0.00 37.72 2.44
649 650 1.407618 GCTCCACCGAGTTTTGGTTTT 59.592 47.619 0.00 0.00 37.72 2.43
653 654 1.856265 GCTGCTCCACCGAGTTTTGG 61.856 60.000 0.00 0.00 38.49 3.28
654 655 1.165907 TGCTGCTCCACCGAGTTTTG 61.166 55.000 0.00 0.00 38.49 2.44
656 657 1.598130 GTGCTGCTCCACCGAGTTT 60.598 57.895 0.00 0.00 38.49 2.66
681 682 0.960364 GCAAAACGGATCTGCCCTCA 60.960 55.000 0.00 0.00 0.00 3.86
710 727 0.741221 CGGAGTGGAGTAGCTTTGGC 60.741 60.000 0.00 0.00 39.06 4.52
818 843 3.572222 TCGGGGTTGGGTTGGGTC 61.572 66.667 0.00 0.00 0.00 4.46
874 914 2.897350 CGATCCTTTGCCGGGAGC 60.897 66.667 2.18 0.00 44.14 4.70
878 918 2.513897 GACCCGATCCTTTGCCGG 60.514 66.667 0.00 0.00 42.64 6.13
879 919 0.748005 ATTGACCCGATCCTTTGCCG 60.748 55.000 0.00 0.00 0.00 5.69
880 920 0.740737 CATTGACCCGATCCTTTGCC 59.259 55.000 0.00 0.00 0.00 4.52
881 921 0.740737 CCATTGACCCGATCCTTTGC 59.259 55.000 0.00 0.00 0.00 3.68
882 922 2.292267 CTCCATTGACCCGATCCTTTG 58.708 52.381 0.00 0.00 0.00 2.77
883 923 1.408822 GCTCCATTGACCCGATCCTTT 60.409 52.381 0.00 0.00 0.00 3.11
884 924 0.181350 GCTCCATTGACCCGATCCTT 59.819 55.000 0.00 0.00 0.00 3.36
885 925 1.832912 GCTCCATTGACCCGATCCT 59.167 57.895 0.00 0.00 0.00 3.24
909 949 2.912025 CTGGGTGTTGGTGGTGGC 60.912 66.667 0.00 0.00 0.00 5.01
1021 1061 1.152963 GTTGTATGCGGCAGGGGAT 60.153 57.895 9.25 0.00 0.00 3.85
1033 1073 2.582498 GCTCGCTCGCGGTTGTAT 60.582 61.111 6.13 0.00 40.25 2.29
1086 1134 1.301677 CCCGCTCAGTTTCTTCTGCC 61.302 60.000 0.00 0.00 35.63 4.85
1088 1136 2.072298 CTTCCCGCTCAGTTTCTTCTG 58.928 52.381 0.00 0.00 36.85 3.02
1089 1137 1.002544 CCTTCCCGCTCAGTTTCTTCT 59.997 52.381 0.00 0.00 0.00 2.85
1091 1139 0.036875 CCCTTCCCGCTCAGTTTCTT 59.963 55.000 0.00 0.00 0.00 2.52
1098 1153 1.990060 CTCCTTCCCTTCCCGCTCA 60.990 63.158 0.00 0.00 0.00 4.26
1165 1220 1.891919 GTTGGTGTGCGCCTTCTCA 60.892 57.895 4.18 0.00 0.00 3.27
1466 1539 2.173569 AGTCAATAACTGCCCATCTCCC 59.826 50.000 0.00 0.00 36.65 4.30
1736 1812 1.078567 GTGCTGCTCTGGAAGGAGG 60.079 63.158 0.00 0.00 43.35 4.30
1737 1813 1.078567 GGTGCTGCTCTGGAAGGAG 60.079 63.158 0.00 0.00 45.76 3.69
1738 1814 2.947532 CGGTGCTGCTCTGGAAGGA 61.948 63.158 0.00 0.00 0.00 3.36
2090 2168 3.690422 TGCTTCGTTTTGTGCTTTGTAG 58.310 40.909 0.00 0.00 0.00 2.74
2235 2317 4.201744 CCGCTGCATGAAATTCAAAATTCC 60.202 41.667 0.00 0.00 0.00 3.01
2272 2357 1.923356 TTTGCCACCCTGGATCTTTC 58.077 50.000 0.00 0.00 40.96 2.62
2280 2365 4.497300 CACTATCAATTTTTGCCACCCTG 58.503 43.478 0.00 0.00 0.00 4.45
2302 2387 5.691305 TCTTAGATTAGTCGAGAGAGTACGC 59.309 44.000 0.00 0.00 45.17 4.42
2304 2389 8.422973 TTGTCTTAGATTAGTCGAGAGAGTAC 57.577 38.462 0.00 0.00 45.17 2.73
2317 2402 9.151471 CCGTCTCAAAATTCTTGTCTTAGATTA 57.849 33.333 0.00 0.00 0.00 1.75
2318 2403 7.878127 TCCGTCTCAAAATTCTTGTCTTAGATT 59.122 33.333 0.00 0.00 0.00 2.40
2319 2404 7.386851 TCCGTCTCAAAATTCTTGTCTTAGAT 58.613 34.615 0.00 0.00 0.00 1.98
2320 2405 6.755206 TCCGTCTCAAAATTCTTGTCTTAGA 58.245 36.000 0.00 0.00 0.00 2.10
2321 2406 6.091441 CCTCCGTCTCAAAATTCTTGTCTTAG 59.909 42.308 0.00 0.00 0.00 2.18
2322 2407 5.932303 CCTCCGTCTCAAAATTCTTGTCTTA 59.068 40.000 0.00 0.00 0.00 2.10
2324 2409 4.319177 CCTCCGTCTCAAAATTCTTGTCT 58.681 43.478 0.00 0.00 0.00 3.41
2331 2496 3.838903 AGTACTCCCTCCGTCTCAAAATT 59.161 43.478 0.00 0.00 0.00 1.82
2337 2502 5.827267 ACTAATTTAGTACTCCCTCCGTCTC 59.173 44.000 7.31 0.00 37.23 3.36
2338 2503 5.593502 CACTAATTTAGTACTCCCTCCGTCT 59.406 44.000 8.71 0.00 37.23 4.18
2418 2588 1.299850 CAGACGCCCGAATCGCATA 60.300 57.895 0.00 0.00 0.00 3.14
2479 2650 5.163258 TGTCAAATTTGCCTACCCAAAACAT 60.163 36.000 13.54 0.00 38.12 2.71
2585 2756 0.459585 TATGACGCCTTTGTCTCGGC 60.460 55.000 0.00 0.00 42.86 5.54
2590 2761 3.612860 CAGTGTAGTATGACGCCTTTGTC 59.387 47.826 0.00 0.00 39.37 3.18
2603 2774 0.677288 AGGCGTTGCACAGTGTAGTA 59.323 50.000 1.61 0.00 0.00 1.82
2643 2814 3.372730 GGATGCAACGCTGGCCAA 61.373 61.111 7.01 0.00 0.00 4.52
2958 3130 0.657368 CACGCGACTGACCTTTTTGC 60.657 55.000 15.93 0.00 0.00 3.68
3066 3238 3.431766 GCGGTGGTGACTACTAAATGGAT 60.432 47.826 0.00 0.00 0.00 3.41
3074 3246 1.228769 TCCTGCGGTGGTGACTACT 60.229 57.895 0.00 0.00 0.00 2.57
3082 3254 2.332063 ATTATTGAGTCCTGCGGTGG 57.668 50.000 0.00 0.00 0.00 4.61
3086 3258 7.471721 TGTAATGAAAATTATTGAGTCCTGCG 58.528 34.615 0.00 0.00 0.00 5.18
3148 3320 9.739276 TGGATATAATATGAACTGGAACAATCC 57.261 33.333 0.00 0.00 46.76 3.01
3151 3323 9.013229 GCATGGATATAATATGAACTGGAACAA 57.987 33.333 0.00 0.00 38.70 2.83
3158 3330 8.370493 GCGTATGCATGGATATAATATGAACT 57.630 34.615 10.16 0.00 42.15 3.01
3181 3353 9.845305 TTTTAAAACGTTTAACCATATTTTGCG 57.155 25.926 15.03 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.