Multiple sequence alignment - TraesCS3D01G377200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G377200 chr3D 100.000 5442 0 0 1 5442 492005568 492000127 0.000000e+00 10050.0
1 TraesCS3D01G377200 chr3D 88.525 61 3 4 1512 1571 583871880 583871823 2.720000e-08 71.3
2 TraesCS3D01G377200 chr3D 84.507 71 5 4 1495 1564 443268710 443268775 1.270000e-06 65.8
3 TraesCS3D01G377200 chr3A 95.171 3562 137 21 1561 5099 633910450 633906901 0.000000e+00 5592.0
4 TraesCS3D01G377200 chr3A 93.984 881 29 8 657 1515 633911333 633910455 0.000000e+00 1312.0
5 TraesCS3D01G377200 chr3B 96.193 2180 50 14 1561 3711 652971227 652969052 0.000000e+00 3535.0
6 TraesCS3D01G377200 chr3B 93.677 775 25 12 759 1515 652971994 652971226 0.000000e+00 1138.0
7 TraesCS3D01G377200 chr3B 96.013 602 23 1 3891 4491 652968494 652967893 0.000000e+00 977.0
8 TraesCS3D01G377200 chr3B 91.892 592 33 8 4520 5101 652967895 652967309 0.000000e+00 813.0
9 TraesCS3D01G377200 chr3B 95.470 287 10 1 3428 3711 652968496 652968782 6.430000e-124 455.0
10 TraesCS3D01G377200 chr3B 89.552 67 7 0 664 730 653123210 653123144 9.710000e-13 86.1
11 TraesCS3D01G377200 chr5A 95.113 573 25 2 77 646 580928364 580927792 0.000000e+00 900.0
12 TraesCS3D01G377200 chr5A 86.154 65 5 2 1502 1565 31448178 31448239 3.520000e-07 67.6
13 TraesCS3D01G377200 chr2D 94.921 571 26 2 77 644 318349988 318350558 0.000000e+00 891.0
14 TraesCS3D01G377200 chr2D 88.286 350 30 8 5102 5442 466805315 466804968 5.070000e-110 409.0
15 TraesCS3D01G377200 chr2D 98.765 81 1 0 1 81 71452858 71452938 1.580000e-30 145.0
16 TraesCS3D01G377200 chr2D 90.000 60 2 2 1506 1564 634857068 634857124 2.100000e-09 75.0
17 TraesCS3D01G377200 chr7D 94.921 571 23 5 80 646 565207994 565207426 0.000000e+00 889.0
18 TraesCS3D01G377200 chr7D 94.921 571 21 6 77 644 562194150 562194715 0.000000e+00 887.0
19 TraesCS3D01G377200 chr7D 97.067 341 9 1 5102 5442 12418448 12418787 1.700000e-159 573.0
20 TraesCS3D01G377200 chr7D 98.765 81 1 0 1 81 604444511 604444431 1.580000e-30 145.0
21 TraesCS3D01G377200 chr7D 98.765 81 1 0 1 81 607548645 607548565 1.580000e-30 145.0
22 TraesCS3D01G377200 chr1D 94.764 573 27 3 77 646 457215814 457215242 0.000000e+00 889.0
23 TraesCS3D01G377200 chr1D 94.746 571 27 2 77 644 433908279 433907709 0.000000e+00 885.0
24 TraesCS3D01G377200 chr1D 94.746 571 26 3 77 644 469096234 469095665 0.000000e+00 885.0
25 TraesCS3D01G377200 chr1D 91.071 56 2 1 1510 1565 245982608 245982660 7.560000e-09 73.1
26 TraesCS3D01G377200 chr1D 90.741 54 2 1 1511 1564 16084941 16084891 9.780000e-08 69.4
27 TraesCS3D01G377200 chr1D 90.741 54 2 1 1511 1564 16086896 16086846 9.780000e-08 69.4
28 TraesCS3D01G377200 chr1D 88.333 60 4 1 1505 1564 371198842 371198898 9.780000e-08 69.4
29 TraesCS3D01G377200 chr1D 86.154 65 6 1 1500 1564 367684830 367684891 3.520000e-07 67.6
30 TraesCS3D01G377200 chr1D 88.136 59 3 2 1506 1564 379793637 379793583 3.520000e-07 67.6
31 TraesCS3D01G377200 chr2A 94.599 574 28 2 77 647 651133834 651133261 0.000000e+00 885.0
32 TraesCS3D01G377200 chr2A 87.500 64 5 3 1510 1571 84152002 84152064 2.720000e-08 71.3
33 TraesCS3D01G377200 chr7A 94.571 571 28 3 77 644 28356274 28356844 0.000000e+00 880.0
34 TraesCS3D01G377200 chr7A 80.460 348 35 17 5097 5442 496883249 496883565 9.110000e-58 235.0
35 TraesCS3D01G377200 chr1A 98.765 81 1 0 1 81 520511104 520511024 1.580000e-30 145.0
36 TraesCS3D01G377200 chr1A 97.531 81 2 0 1 81 320339829 320339749 7.350000e-29 139.0
37 TraesCS3D01G377200 chr1A 85.075 67 4 4 1501 1565 395484914 395484976 4.550000e-06 63.9
38 TraesCS3D01G377200 chrUn 97.561 82 2 0 1 82 305360550 305360631 2.040000e-29 141.0
39 TraesCS3D01G377200 chrUn 97.531 81 2 0 1 81 270108126 270108046 7.350000e-29 139.0
40 TraesCS3D01G377200 chrUn 97.531 81 2 0 1 81 292180482 292180402 7.350000e-29 139.0
41 TraesCS3D01G377200 chrUn 90.164 61 2 2 1505 1565 29722139 29722083 5.850000e-10 76.8
42 TraesCS3D01G377200 chrUn 90.566 53 2 1 1512 1564 42198683 42198732 3.520000e-07 67.6
43 TraesCS3D01G377200 chrUn 89.286 56 2 3 1509 1564 320256093 320256144 3.520000e-07 67.6
44 TraesCS3D01G377200 chrUn 89.286 56 2 3 1509 1564 357700743 357700794 3.520000e-07 67.6
45 TraesCS3D01G377200 chrUn 88.333 60 2 3 1507 1564 359670003 359670059 3.520000e-07 67.6
46 TraesCS3D01G377200 chrUn 88.136 59 2 3 1508 1564 26701816 26701871 1.270000e-06 65.8
47 TraesCS3D01G377200 chrUn 89.091 55 3 1 1510 1564 132121144 132121195 1.270000e-06 65.8
48 TraesCS3D01G377200 chrUn 90.385 52 2 2 1513 1564 225564115 225564067 1.270000e-06 65.8
49 TraesCS3D01G377200 chrUn 90.385 52 2 2 1513 1564 237460255 237460303 1.270000e-06 65.8
50 TraesCS3D01G377200 chr7B 97.561 82 2 0 1 82 36860431 36860350 2.040000e-29 141.0
51 TraesCS3D01G377200 chr7B 96.825 63 1 1 5283 5344 21308133 21308195 2.680000e-18 104.0
52 TraesCS3D01G377200 chr7B 100.000 28 0 0 5308 5335 106604371 106604398 1.000000e-02 52.8
53 TraesCS3D01G377200 chr6B 94.253 87 5 0 5102 5188 602844795 602844881 3.420000e-27 134.0
54 TraesCS3D01G377200 chr6B 82.051 156 15 7 5283 5438 602845391 602845533 2.660000e-23 121.0
55 TraesCS3D01G377200 chr2B 93.182 88 6 0 5102 5189 789041452 789041365 4.420000e-26 130.0
56 TraesCS3D01G377200 chr2B 81.707 82 8 5 1485 1564 136175687 136175763 1.640000e-05 62.1
57 TraesCS3D01G377200 chr1B 81.250 160 17 7 5283 5442 673544832 673544978 3.440000e-22 117.0
58 TraesCS3D01G377200 chr4B 92.500 80 6 0 5321 5400 559643293 559643372 1.240000e-21 115.0
59 TraesCS3D01G377200 chr4B 92.500 80 6 0 5321 5400 559643803 559643882 1.240000e-21 115.0
60 TraesCS3D01G377200 chr4B 90.164 61 2 2 1505 1565 667977366 667977422 5.850000e-10 76.8
61 TraesCS3D01G377200 chr4B 92.453 53 1 3 1512 1564 345265680 345265729 7.560000e-09 73.1
62 TraesCS3D01G377200 chr4B 88.333 60 3 2 1506 1564 103890062 103890006 9.780000e-08 69.4
63 TraesCS3D01G377200 chr5B 85.263 95 13 1 5284 5377 360404989 360404895 4.490000e-16 97.1
64 TraesCS3D01G377200 chr4A 91.667 60 5 0 5283 5342 603212887 603212828 3.490000e-12 84.2
65 TraesCS3D01G377200 chr4A 88.710 62 3 2 1511 1571 55431798 55431856 7.560000e-09 73.1
66 TraesCS3D01G377200 chr4A 88.333 60 4 1 1505 1564 729347501 729347445 9.780000e-08 69.4
67 TraesCS3D01G377200 chr4D 89.394 66 1 5 1501 1564 16652531 16652470 1.630000e-10 78.7
68 TraesCS3D01G377200 chr4D 90.909 55 2 1 1510 1564 39220534 39220585 2.720000e-08 71.3
69 TraesCS3D01G377200 chr4D 90.909 55 2 1 1510 1564 335315829 335315778 2.720000e-08 71.3
70 TraesCS3D01G377200 chr6D 91.071 56 2 1 1509 1564 382611178 382611126 7.560000e-09 73.1
71 TraesCS3D01G377200 chr6D 88.525 61 2 3 1506 1564 50742257 50742314 9.780000e-08 69.4
72 TraesCS3D01G377200 chr6D 90.385 52 2 1 1513 1564 142141247 142141199 1.270000e-06 65.8
73 TraesCS3D01G377200 chr6A 89.655 58 3 1 1506 1563 511531606 511531660 2.720000e-08 71.3
74 TraesCS3D01G377200 chr6A 87.302 63 4 2 1502 1564 563706151 563706093 9.780000e-08 69.4
75 TraesCS3D01G377200 chr5D 86.000 50 6 1 5286 5335 37196245 37196293 1.000000e-02 52.8
76 TraesCS3D01G377200 chr5D 100.000 28 0 0 5308 5335 401352107 401352080 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G377200 chr3D 492000127 492005568 5441 True 10050.00 10050 100.00000 1 5442 1 chr3D.!!$R1 5441
1 TraesCS3D01G377200 chr3A 633906901 633911333 4432 True 3452.00 5592 94.57750 657 5099 2 chr3A.!!$R1 4442
2 TraesCS3D01G377200 chr3B 652967309 652971994 4685 True 1615.75 3535 94.44375 759 5101 4 chr3B.!!$R2 4342
3 TraesCS3D01G377200 chr5A 580927792 580928364 572 True 900.00 900 95.11300 77 646 1 chr5A.!!$R1 569
4 TraesCS3D01G377200 chr2D 318349988 318350558 570 False 891.00 891 94.92100 77 644 1 chr2D.!!$F2 567
5 TraesCS3D01G377200 chr7D 565207426 565207994 568 True 889.00 889 94.92100 80 646 1 chr7D.!!$R1 566
6 TraesCS3D01G377200 chr7D 562194150 562194715 565 False 887.00 887 94.92100 77 644 1 chr7D.!!$F2 567
7 TraesCS3D01G377200 chr1D 457215242 457215814 572 True 889.00 889 94.76400 77 646 1 chr1D.!!$R3 569
8 TraesCS3D01G377200 chr1D 433907709 433908279 570 True 885.00 885 94.74600 77 644 1 chr1D.!!$R2 567
9 TraesCS3D01G377200 chr1D 469095665 469096234 569 True 885.00 885 94.74600 77 644 1 chr1D.!!$R4 567
10 TraesCS3D01G377200 chr2A 651133261 651133834 573 True 885.00 885 94.59900 77 647 1 chr2A.!!$R1 570
11 TraesCS3D01G377200 chr7A 28356274 28356844 570 False 880.00 880 94.57100 77 644 1 chr7A.!!$F1 567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
742 757 0.248054 AACAAAAGTGCAGCGACACG 60.248 50.0 6.52 0.0 45.45 4.49 F
1425 1463 0.541863 AGAAGGGATTCGATGGCGTT 59.458 50.0 0.00 0.0 38.98 4.84 F
2041 2100 0.917533 AGGCTTGGAGCATCATCACT 59.082 50.0 2.04 0.0 44.75 3.41 F
3806 3877 0.397941 TGAGACCAAGTCCAGCCTTG 59.602 55.0 0.00 0.0 41.21 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1921 1970 0.105964 TTTGTGAGTGCAGCGTAGGT 59.894 50.000 0.00 0.0 41.48 3.08 R
2251 2316 3.819368 TGCAAGAACTCAACCATCTTCA 58.181 40.909 0.00 0.0 31.26 3.02 R
4029 4478 1.467342 CATGCCATGTGTCACTGACAG 59.533 52.381 12.33 0.0 43.57 3.51 R
5397 5858 0.035739 ATAAACTGGAACGTGCGGGT 59.964 50.000 0.00 0.0 0.00 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.544038 AAACATTTTGTAGGCATTTCAAGC 57.456 33.333 0.00 0.00 0.00 4.01
24 25 5.473066 ACATTTTGTAGGCATTTCAAGCT 57.527 34.783 0.00 0.00 0.00 3.74
25 26 5.857268 ACATTTTGTAGGCATTTCAAGCTT 58.143 33.333 0.00 0.00 0.00 3.74
26 27 6.290605 ACATTTTGTAGGCATTTCAAGCTTT 58.709 32.000 0.00 0.00 0.00 3.51
27 28 6.203338 ACATTTTGTAGGCATTTCAAGCTTTG 59.797 34.615 0.00 0.00 0.00 2.77
28 29 3.940209 TGTAGGCATTTCAAGCTTTGG 57.060 42.857 0.00 0.00 0.00 3.28
29 30 3.495331 TGTAGGCATTTCAAGCTTTGGA 58.505 40.909 0.00 0.00 0.00 3.53
30 31 3.507233 TGTAGGCATTTCAAGCTTTGGAG 59.493 43.478 0.00 0.00 0.00 3.86
31 32 1.897802 AGGCATTTCAAGCTTTGGAGG 59.102 47.619 0.00 0.00 0.00 4.30
32 33 1.673923 GGCATTTCAAGCTTTGGAGGC 60.674 52.381 0.00 0.00 0.00 4.70
33 34 1.274447 GCATTTCAAGCTTTGGAGGCT 59.726 47.619 0.00 0.00 42.31 4.58
35 36 3.804759 GCATTTCAAGCTTTGGAGGCTTT 60.805 43.478 0.00 0.00 46.24 3.51
36 37 3.733443 TTTCAAGCTTTGGAGGCTTTC 57.267 42.857 0.00 0.00 46.24 2.62
37 38 2.363306 TCAAGCTTTGGAGGCTTTCA 57.637 45.000 0.00 0.00 46.24 2.69
38 39 2.665165 TCAAGCTTTGGAGGCTTTCAA 58.335 42.857 0.00 0.00 46.24 2.69
39 40 2.624838 TCAAGCTTTGGAGGCTTTCAAG 59.375 45.455 0.00 0.00 46.24 3.02
40 41 1.625511 AGCTTTGGAGGCTTTCAAGG 58.374 50.000 0.00 0.00 36.56 3.61
41 42 1.133356 AGCTTTGGAGGCTTTCAAGGT 60.133 47.619 0.83 7.22 36.56 3.50
42 43 1.688735 GCTTTGGAGGCTTTCAAGGTT 59.311 47.619 0.83 0.00 0.00 3.50
43 44 2.288457 GCTTTGGAGGCTTTCAAGGTTC 60.288 50.000 0.83 0.00 0.00 3.62
44 45 2.746279 TTGGAGGCTTTCAAGGTTCA 57.254 45.000 0.00 0.00 0.00 3.18
45 46 2.746279 TGGAGGCTTTCAAGGTTCAA 57.254 45.000 0.00 0.00 0.00 2.69
46 47 2.306847 TGGAGGCTTTCAAGGTTCAAC 58.693 47.619 0.00 0.00 0.00 3.18
47 48 2.306847 GGAGGCTTTCAAGGTTCAACA 58.693 47.619 0.00 0.00 0.00 3.33
48 49 2.034685 GGAGGCTTTCAAGGTTCAACAC 59.965 50.000 0.00 0.00 0.00 3.32
49 50 2.687935 GAGGCTTTCAAGGTTCAACACA 59.312 45.455 0.00 0.00 0.00 3.72
50 51 3.096092 AGGCTTTCAAGGTTCAACACAA 58.904 40.909 0.00 0.00 0.00 3.33
51 52 3.706086 AGGCTTTCAAGGTTCAACACAAT 59.294 39.130 0.00 0.00 0.00 2.71
52 53 3.803778 GGCTTTCAAGGTTCAACACAATG 59.196 43.478 0.00 0.00 0.00 2.82
53 54 3.803778 GCTTTCAAGGTTCAACACAATGG 59.196 43.478 0.00 0.00 0.00 3.16
54 55 3.451141 TTCAAGGTTCAACACAATGGC 57.549 42.857 0.00 0.00 0.00 4.40
55 56 2.382882 TCAAGGTTCAACACAATGGCA 58.617 42.857 0.00 0.00 0.00 4.92
56 57 2.762887 TCAAGGTTCAACACAATGGCAA 59.237 40.909 0.00 0.00 0.00 4.52
57 58 3.125316 CAAGGTTCAACACAATGGCAAG 58.875 45.455 0.00 0.00 0.00 4.01
58 59 2.387757 AGGTTCAACACAATGGCAAGT 58.612 42.857 0.00 0.00 0.00 3.16
59 60 2.101249 AGGTTCAACACAATGGCAAGTG 59.899 45.455 18.29 18.29 41.40 3.16
60 61 1.860326 GTTCAACACAATGGCAAGTGC 59.140 47.619 19.40 0.00 39.30 4.40
61 62 1.401761 TCAACACAATGGCAAGTGCT 58.598 45.000 19.40 8.13 39.30 4.40
62 63 1.755959 TCAACACAATGGCAAGTGCTT 59.244 42.857 19.40 11.96 39.30 3.91
63 64 2.129607 CAACACAATGGCAAGTGCTTC 58.870 47.619 19.40 0.00 39.30 3.86
64 65 1.401761 ACACAATGGCAAGTGCTTCA 58.598 45.000 19.40 0.00 39.30 3.02
65 66 1.755959 ACACAATGGCAAGTGCTTCAA 59.244 42.857 19.40 0.00 39.30 2.69
66 67 2.129607 CACAATGGCAAGTGCTTCAAC 58.870 47.619 9.96 0.00 41.70 3.18
67 68 1.069049 ACAATGGCAAGTGCTTCAACC 59.931 47.619 2.85 0.00 41.70 3.77
68 69 1.342174 CAATGGCAAGTGCTTCAACCT 59.658 47.619 2.85 0.00 41.70 3.50
69 70 1.708341 ATGGCAAGTGCTTCAACCTT 58.292 45.000 2.85 0.00 41.70 3.50
70 71 1.484038 TGGCAAGTGCTTCAACCTTT 58.516 45.000 2.85 0.00 41.70 3.11
71 72 1.408702 TGGCAAGTGCTTCAACCTTTC 59.591 47.619 2.85 0.00 41.70 2.62
72 73 1.269778 GGCAAGTGCTTCAACCTTTCC 60.270 52.381 2.85 0.00 41.70 3.13
73 74 1.269778 GCAAGTGCTTCAACCTTTCCC 60.270 52.381 0.00 0.00 38.21 3.97
74 75 2.031120 CAAGTGCTTCAACCTTTCCCA 58.969 47.619 0.00 0.00 0.00 4.37
75 76 2.629617 CAAGTGCTTCAACCTTTCCCAT 59.370 45.455 0.00 0.00 0.00 4.00
120 121 2.223711 GCCAAGACAAAGGCGAAAGAAA 60.224 45.455 0.00 0.00 41.70 2.52
188 190 1.008538 CAACACCTTGTCGCCAAGC 60.009 57.895 0.00 0.00 45.57 4.01
191 193 1.034838 ACACCTTGTCGCCAAGCAAA 61.035 50.000 0.00 0.00 45.57 3.68
254 257 1.333931 GACGACGAGTGATCTATGGCA 59.666 52.381 0.00 0.00 0.00 4.92
647 656 2.290896 CCCCATTGGAGTTGCTCTTACA 60.291 50.000 3.62 0.00 35.39 2.41
648 657 3.420893 CCCATTGGAGTTGCTCTTACAA 58.579 45.455 3.62 0.00 0.00 2.41
649 658 4.019174 CCCATTGGAGTTGCTCTTACAAT 58.981 43.478 3.62 0.00 35.77 2.71
650 659 4.463891 CCCATTGGAGTTGCTCTTACAATT 59.536 41.667 3.62 0.00 34.34 2.32
651 660 5.393461 CCCATTGGAGTTGCTCTTACAATTC 60.393 44.000 3.62 0.00 36.01 2.17
652 661 5.416952 CCATTGGAGTTGCTCTTACAATTCT 59.583 40.000 0.00 0.00 36.73 2.40
653 662 6.071728 CCATTGGAGTTGCTCTTACAATTCTT 60.072 38.462 0.00 0.00 36.73 2.52
654 663 6.959639 TTGGAGTTGCTCTTACAATTCTTT 57.040 33.333 0.00 0.00 36.73 2.52
655 664 6.317789 TGGAGTTGCTCTTACAATTCTTTG 57.682 37.500 0.00 0.00 36.73 2.77
662 671 4.913924 GCTCTTACAATTCTTTGTGTGCTG 59.086 41.667 1.76 0.00 45.56 4.41
667 676 4.675510 ACAATTCTTTGTGTGCTGAAGTG 58.324 39.130 0.00 0.00 44.36 3.16
731 740 1.064952 CGCAGGACCGAAAACAAAAGT 59.935 47.619 0.00 0.00 0.00 2.66
742 757 0.248054 AACAAAAGTGCAGCGACACG 60.248 50.000 6.52 0.00 45.45 4.49
769 784 4.675933 GCCCGTCCTATTTTACGCATTTTT 60.676 41.667 0.00 0.00 37.78 1.94
770 785 5.032220 CCCGTCCTATTTTACGCATTTTTC 58.968 41.667 0.00 0.00 37.78 2.29
772 787 5.737290 CCGTCCTATTTTACGCATTTTTCAG 59.263 40.000 0.00 0.00 37.78 3.02
855 876 2.525381 CCCTCCTCCCCATCCTCG 60.525 72.222 0.00 0.00 0.00 4.63
1126 1158 3.452786 CCCTCTCCGCTTGCTCGA 61.453 66.667 0.00 0.00 0.00 4.04
1425 1463 0.541863 AGAAGGGATTCGATGGCGTT 59.458 50.000 0.00 0.00 38.98 4.84
1503 1541 5.007234 TGGATTGTTCGTACTGTTTGTCTTG 59.993 40.000 0.00 0.00 0.00 3.02
1515 1553 9.442033 GTACTGTTTGTCTTGGTTTTATTGTAC 57.558 33.333 0.00 0.00 0.00 2.90
1517 1555 8.403236 ACTGTTTGTCTTGGTTTTATTGTACTC 58.597 33.333 0.00 0.00 0.00 2.59
1519 1557 6.887626 TTGTCTTGGTTTTATTGTACTCCC 57.112 37.500 0.00 0.00 0.00 4.30
1520 1558 6.195600 TGTCTTGGTTTTATTGTACTCCCT 57.804 37.500 0.00 0.00 0.00 4.20
1521 1559 6.235664 TGTCTTGGTTTTATTGTACTCCCTC 58.764 40.000 0.00 0.00 0.00 4.30
1522 1560 6.043938 TGTCTTGGTTTTATTGTACTCCCTCT 59.956 38.462 0.00 0.00 0.00 3.69
1523 1561 6.371825 GTCTTGGTTTTATTGTACTCCCTCTG 59.628 42.308 0.00 0.00 0.00 3.35
1524 1562 5.836024 TGGTTTTATTGTACTCCCTCTGT 57.164 39.130 0.00 0.00 0.00 3.41
1525 1563 6.938698 TGGTTTTATTGTACTCCCTCTGTA 57.061 37.500 0.00 0.00 0.00 2.74
1526 1564 7.319052 TGGTTTTATTGTACTCCCTCTGTAA 57.681 36.000 0.00 0.00 0.00 2.41
1527 1565 7.924541 TGGTTTTATTGTACTCCCTCTGTAAT 58.075 34.615 0.00 0.00 0.00 1.89
1528 1566 9.049050 TGGTTTTATTGTACTCCCTCTGTAATA 57.951 33.333 0.00 0.00 0.00 0.98
1529 1567 9.895138 GGTTTTATTGTACTCCCTCTGTAATAA 57.105 33.333 0.00 0.00 0.00 1.40
1586 1624 5.506686 TTGCAAAGTATGTAAGCAACACA 57.493 34.783 0.00 0.00 42.09 3.72
1606 1644 2.672961 TATGCTTGGAGTCTTCACCG 57.327 50.000 0.00 0.00 0.00 4.94
1921 1970 7.490657 TTTAGTCCTGAAGTTTATGCCTAGA 57.509 36.000 0.00 0.00 0.00 2.43
1927 1976 5.258456 TGAAGTTTATGCCTAGACCTACG 57.742 43.478 0.00 0.00 0.00 3.51
1953 2003 4.437930 GCACTCACAAACTTCAGATATGCC 60.438 45.833 0.00 0.00 0.00 4.40
1960 2010 5.415701 ACAAACTTCAGATATGCCGTCAAAT 59.584 36.000 0.00 0.00 0.00 2.32
1967 2025 5.633601 TCAGATATGCCGTCAAATTCGTATC 59.366 40.000 0.00 0.00 0.00 2.24
1979 2037 7.004225 GTCAAATTCGTATCGATTGTAGCATC 58.996 38.462 1.71 0.00 35.23 3.91
1980 2038 6.699642 TCAAATTCGTATCGATTGTAGCATCA 59.300 34.615 1.71 0.00 35.23 3.07
1988 2046 8.435430 CGTATCGATTGTAGCATCACATAAAAT 58.565 33.333 1.71 0.00 0.00 1.82
1991 2049 9.710900 ATCGATTGTAGCATCACATAAAATAGA 57.289 29.630 0.00 0.00 0.00 1.98
2041 2100 0.917533 AGGCTTGGAGCATCATCACT 59.082 50.000 2.04 0.00 44.75 3.41
2042 2101 1.022735 GGCTTGGAGCATCATCACTG 58.977 55.000 2.04 0.00 44.75 3.66
2044 2103 1.669779 GCTTGGAGCATCATCACTGTC 59.330 52.381 0.00 0.00 41.89 3.51
2064 2123 7.649306 CACTGTCAAATTCTTAAGTTTGAAGGG 59.351 37.037 17.93 14.98 43.56 3.95
2080 2140 7.985184 AGTTTGAAGGGAAAAAGAACAATTACC 59.015 33.333 0.00 0.00 0.00 2.85
2099 2159 9.219603 CAATTACCTTTGTCTGTTATCTTCTGA 57.780 33.333 0.00 0.00 0.00 3.27
2122 2187 9.604626 CTGAGTTTGCTTTATTCTCTTTAGTTG 57.395 33.333 0.00 0.00 0.00 3.16
2141 2206 4.630894 TTGTTTGTCACAATCCTGTCAC 57.369 40.909 0.00 0.00 40.71 3.67
2148 2213 4.696877 TGTCACAATCCTGTCACATGAATC 59.303 41.667 0.00 0.00 30.72 2.52
2193 2258 2.396590 TCTGCCGGTTCAATCTAACC 57.603 50.000 1.90 0.00 44.63 2.85
2221 2286 3.700038 GCACCTAGAGCTAACACTTCCTA 59.300 47.826 0.00 0.00 0.00 2.94
2251 2316 3.567164 CAGTTCTTTGGCAAGTCTGATGT 59.433 43.478 0.00 0.00 36.30 3.06
2720 2785 5.584649 TCATATCTTTGCCGAAAACACTAGG 59.415 40.000 0.00 0.00 0.00 3.02
3349 3416 8.772250 AGTGATCAGAACCTTTATATTCCTGAA 58.228 33.333 0.00 0.00 0.00 3.02
3552 3619 5.596361 TGTGATGTGTAAACTGACCCAAAAT 59.404 36.000 0.00 0.00 0.00 1.82
3703 3774 7.355101 AGTCTAGGTCTGGTTAGATATGAACA 58.645 38.462 0.00 0.00 34.94 3.18
3747 3818 4.202503 ACAATCTGGATGGCTTATAGGTGG 60.203 45.833 0.00 0.00 0.00 4.61
3766 3837 6.924111 AGGTGGTTCTTTGCATATAACTTTG 58.076 36.000 5.62 0.00 0.00 2.77
3806 3877 0.397941 TGAGACCAAGTCCAGCCTTG 59.602 55.000 0.00 0.00 41.21 3.61
3877 3948 6.005198 ACCCGTTCAATTTGTTATCCTTGTA 58.995 36.000 0.00 0.00 0.00 2.41
4200 4649 1.988107 TCCTTCAAATCTCTGCACCCT 59.012 47.619 0.00 0.00 0.00 4.34
4452 4901 1.824852 CCCAAAGTAGGGGCAAACATC 59.175 52.381 0.00 0.00 45.60 3.06
4456 4905 2.496899 AGTAGGGGCAAACATCACTG 57.503 50.000 0.00 0.00 0.00 3.66
4466 4915 4.161333 GCAAACATCACTGATGCAACTAC 58.839 43.478 17.50 1.31 43.15 2.73
4468 4917 3.701205 ACATCACTGATGCAACTACCA 57.299 42.857 17.50 0.00 43.15 3.25
4523 4973 4.018490 TGGATGGTCATTTGGTCAATCAG 58.982 43.478 0.00 0.00 0.00 2.90
4538 4988 1.332889 ATCAGCACATCCGAGCCTCA 61.333 55.000 0.00 0.00 0.00 3.86
4549 4999 0.320374 CGAGCCTCAAAGTACCACCA 59.680 55.000 0.00 0.00 0.00 4.17
4592 5042 4.504097 TGAATGCTGTATGATCTCGAAACG 59.496 41.667 0.00 0.00 0.00 3.60
4647 5098 8.093307 CCAATGCTGTATGATAGTATCTGACTT 58.907 37.037 11.40 0.00 39.81 3.01
4708 5159 5.741040 GCGTCGGTGCCTATTAGTATATTAC 59.259 44.000 0.00 0.00 0.00 1.89
4712 5163 6.830324 TCGGTGCCTATTAGTATATTACGGAT 59.170 38.462 0.00 0.00 0.00 4.18
4748 5199 7.712639 ACCATATGCTGTTTCTATCTACTGTTG 59.287 37.037 0.00 0.00 0.00 3.33
4836 5296 8.230486 GTGTACAGGAAAGAGAAACATATGTTG 58.770 37.037 21.46 8.39 38.44 3.33
4851 5311 6.291377 ACATATGTTGTGAGGTATAGCTTGG 58.709 40.000 5.80 0.00 37.11 3.61
4870 5330 3.496331 TGGATGGTGTTCCCTTTTCTTC 58.504 45.455 0.00 0.00 34.67 2.87
4874 5334 3.295973 TGGTGTTCCCTTTTCTTCCTTG 58.704 45.455 0.00 0.00 0.00 3.61
4920 5380 3.771479 TGATGTTGTCTACTCCAGCATCT 59.229 43.478 15.10 0.00 45.36 2.90
5011 5471 7.148018 CCCCCATATTCATTATGAAATTCGAGG 60.148 40.741 11.88 8.55 40.12 4.63
5012 5472 7.148018 CCCCATATTCATTATGAAATTCGAGGG 60.148 40.741 11.88 15.03 40.12 4.30
5013 5473 7.611467 CCCATATTCATTATGAAATTCGAGGGA 59.389 37.037 11.88 0.00 40.12 4.20
5113 5574 8.846943 TTTAGATTAACATCACTTCTGCTTCA 57.153 30.769 0.00 0.00 0.00 3.02
5114 5575 6.981762 AGATTAACATCACTTCTGCTTCAG 57.018 37.500 0.00 0.00 0.00 3.02
5115 5576 6.471146 AGATTAACATCACTTCTGCTTCAGT 58.529 36.000 0.00 0.00 32.61 3.41
5116 5577 7.615403 AGATTAACATCACTTCTGCTTCAGTA 58.385 34.615 0.00 0.00 32.61 2.74
5117 5578 7.763528 AGATTAACATCACTTCTGCTTCAGTAG 59.236 37.037 0.00 0.00 35.49 2.57
5118 5579 5.474578 AACATCACTTCTGCTTCAGTAGA 57.525 39.130 7.33 0.00 33.94 2.59
5119 5580 4.815269 ACATCACTTCTGCTTCAGTAGAC 58.185 43.478 7.33 0.00 36.52 2.59
5120 5581 3.944055 TCACTTCTGCTTCAGTAGACC 57.056 47.619 7.33 0.00 36.52 3.85
5121 5582 2.563179 TCACTTCTGCTTCAGTAGACCC 59.437 50.000 7.33 0.00 36.52 4.46
5122 5583 1.903183 ACTTCTGCTTCAGTAGACCCC 59.097 52.381 7.33 0.00 36.52 4.95
5123 5584 1.208293 CTTCTGCTTCAGTAGACCCCC 59.792 57.143 0.00 0.00 36.52 5.40
5124 5585 0.413832 TCTGCTTCAGTAGACCCCCT 59.586 55.000 0.00 0.00 31.83 4.79
5125 5586 1.203313 TCTGCTTCAGTAGACCCCCTT 60.203 52.381 0.00 0.00 31.83 3.95
5126 5587 2.043939 TCTGCTTCAGTAGACCCCCTTA 59.956 50.000 0.00 0.00 31.83 2.69
5127 5588 2.838202 CTGCTTCAGTAGACCCCCTTAA 59.162 50.000 0.00 0.00 0.00 1.85
5128 5589 3.456277 CTGCTTCAGTAGACCCCCTTAAT 59.544 47.826 0.00 0.00 0.00 1.40
5129 5590 3.454812 TGCTTCAGTAGACCCCCTTAATC 59.545 47.826 0.00 0.00 0.00 1.75
5130 5591 3.454812 GCTTCAGTAGACCCCCTTAATCA 59.545 47.826 0.00 0.00 0.00 2.57
5131 5592 4.683671 GCTTCAGTAGACCCCCTTAATCAC 60.684 50.000 0.00 0.00 0.00 3.06
5132 5593 4.069312 TCAGTAGACCCCCTTAATCACA 57.931 45.455 0.00 0.00 0.00 3.58
5133 5594 4.631234 TCAGTAGACCCCCTTAATCACAT 58.369 43.478 0.00 0.00 0.00 3.21
5134 5595 4.654262 TCAGTAGACCCCCTTAATCACATC 59.346 45.833 0.00 0.00 0.00 3.06
5135 5596 3.641906 AGTAGACCCCCTTAATCACATCG 59.358 47.826 0.00 0.00 0.00 3.84
5136 5597 2.759355 AGACCCCCTTAATCACATCGA 58.241 47.619 0.00 0.00 0.00 3.59
5137 5598 3.318313 AGACCCCCTTAATCACATCGAT 58.682 45.455 0.00 0.00 35.12 3.59
5138 5599 3.071602 AGACCCCCTTAATCACATCGATG 59.928 47.826 23.68 23.68 33.40 3.84
5139 5600 2.106511 ACCCCCTTAATCACATCGATGG 59.893 50.000 28.09 17.13 33.40 3.51
5140 5601 2.154462 CCCCTTAATCACATCGATGGC 58.846 52.381 28.09 0.00 33.40 4.40
5141 5602 2.224621 CCCCTTAATCACATCGATGGCT 60.225 50.000 28.09 12.20 33.40 4.75
5142 5603 2.810274 CCCTTAATCACATCGATGGCTG 59.190 50.000 28.09 18.33 33.40 4.85
5143 5604 3.494924 CCCTTAATCACATCGATGGCTGA 60.495 47.826 28.09 22.60 33.40 4.26
5144 5605 3.744942 CCTTAATCACATCGATGGCTGAG 59.255 47.826 28.09 16.59 33.40 3.35
5145 5606 4.502087 CCTTAATCACATCGATGGCTGAGA 60.502 45.833 28.09 17.08 33.40 3.27
5146 5607 3.766068 AATCACATCGATGGCTGAGAT 57.234 42.857 28.09 18.35 33.40 2.75
5147 5608 3.766068 ATCACATCGATGGCTGAGATT 57.234 42.857 28.09 7.44 31.20 2.40
5148 5609 4.879197 ATCACATCGATGGCTGAGATTA 57.121 40.909 28.09 3.90 31.20 1.75
5149 5610 3.982475 TCACATCGATGGCTGAGATTAC 58.018 45.455 28.09 0.00 0.00 1.89
5150 5611 3.062763 CACATCGATGGCTGAGATTACC 58.937 50.000 28.09 0.00 0.00 2.85
5151 5612 2.037772 ACATCGATGGCTGAGATTACCC 59.962 50.000 28.09 0.00 0.00 3.69
5152 5613 2.088104 TCGATGGCTGAGATTACCCT 57.912 50.000 0.00 0.00 0.00 4.34
5153 5614 3.238788 TCGATGGCTGAGATTACCCTA 57.761 47.619 0.00 0.00 0.00 3.53
5154 5615 3.779444 TCGATGGCTGAGATTACCCTAT 58.221 45.455 0.00 0.00 0.00 2.57
5155 5616 4.930696 TCGATGGCTGAGATTACCCTATA 58.069 43.478 0.00 0.00 0.00 1.31
5156 5617 4.705507 TCGATGGCTGAGATTACCCTATAC 59.294 45.833 0.00 0.00 0.00 1.47
5157 5618 4.142138 CGATGGCTGAGATTACCCTATACC 60.142 50.000 0.00 0.00 0.00 2.73
5158 5619 3.517612 TGGCTGAGATTACCCTATACCC 58.482 50.000 0.00 0.00 0.00 3.69
5159 5620 2.838813 GGCTGAGATTACCCTATACCCC 59.161 54.545 0.00 0.00 0.00 4.95
5160 5621 3.504343 GGCTGAGATTACCCTATACCCCT 60.504 52.174 0.00 0.00 0.00 4.79
5161 5622 4.168883 GCTGAGATTACCCTATACCCCTT 58.831 47.826 0.00 0.00 0.00 3.95
5162 5623 4.223255 GCTGAGATTACCCTATACCCCTTC 59.777 50.000 0.00 0.00 0.00 3.46
5163 5624 5.403512 CTGAGATTACCCTATACCCCTTCA 58.596 45.833 0.00 0.00 0.00 3.02
5164 5625 5.989717 TGAGATTACCCTATACCCCTTCAT 58.010 41.667 0.00 0.00 0.00 2.57
5165 5626 7.123560 TGAGATTACCCTATACCCCTTCATA 57.876 40.000 0.00 0.00 0.00 2.15
5166 5627 7.550042 TGAGATTACCCTATACCCCTTCATAA 58.450 38.462 0.00 0.00 0.00 1.90
5167 5628 8.191110 TGAGATTACCCTATACCCCTTCATAAT 58.809 37.037 0.00 0.00 0.00 1.28
5168 5629 9.725206 GAGATTACCCTATACCCCTTCATAATA 57.275 37.037 0.00 0.00 0.00 0.98
5172 5633 7.584396 ACCCTATACCCCTTCATAATAAAGG 57.416 40.000 0.00 0.00 42.52 3.11
5173 5634 7.326248 ACCCTATACCCCTTCATAATAAAGGA 58.674 38.462 3.49 0.00 45.15 3.36
5174 5635 7.239143 ACCCTATACCCCTTCATAATAAAGGAC 59.761 40.741 3.49 0.00 45.15 3.85
5175 5636 7.238933 CCCTATACCCCTTCATAATAAAGGACA 59.761 40.741 3.49 0.00 45.15 4.02
5176 5637 8.322091 CCTATACCCCTTCATAATAAAGGACAG 58.678 40.741 3.49 0.00 45.15 3.51
5177 5638 5.388599 ACCCCTTCATAATAAAGGACAGG 57.611 43.478 3.49 0.00 45.15 4.00
5178 5639 5.043762 ACCCCTTCATAATAAAGGACAGGA 58.956 41.667 3.49 0.00 45.15 3.86
5179 5640 5.676811 ACCCCTTCATAATAAAGGACAGGAT 59.323 40.000 3.49 0.00 45.15 3.24
5180 5641 6.006449 CCCCTTCATAATAAAGGACAGGATG 58.994 44.000 3.49 0.00 45.15 3.51
5181 5642 6.006449 CCCTTCATAATAAAGGACAGGATGG 58.994 44.000 3.49 0.00 45.15 3.51
5182 5643 6.410853 CCCTTCATAATAAAGGACAGGATGGT 60.411 42.308 3.49 0.00 45.15 3.55
5183 5644 6.712547 CCTTCATAATAAAGGACAGGATGGTC 59.287 42.308 0.00 0.00 45.15 4.02
5184 5645 7.420680 CCTTCATAATAAAGGACAGGATGGTCT 60.421 40.741 0.00 0.00 45.15 3.85
5185 5646 7.451731 TCATAATAAAGGACAGGATGGTCTT 57.548 36.000 0.00 0.00 43.62 3.01
5186 5647 7.872138 TCATAATAAAGGACAGGATGGTCTTT 58.128 34.615 0.00 0.00 43.62 2.52
5187 5648 8.336235 TCATAATAAAGGACAGGATGGTCTTTT 58.664 33.333 8.19 8.19 45.41 2.27
5188 5649 8.971073 CATAATAAAGGACAGGATGGTCTTTTT 58.029 33.333 8.38 5.55 42.28 1.94
5189 5650 7.468141 AATAAAGGACAGGATGGTCTTTTTC 57.532 36.000 8.38 0.00 42.28 2.29
5190 5651 4.731313 AAGGACAGGATGGTCTTTTTCT 57.269 40.909 0.00 0.00 43.62 2.52
5191 5652 4.293662 AGGACAGGATGGTCTTTTTCTC 57.706 45.455 0.00 0.00 43.62 2.87
5192 5653 3.652869 AGGACAGGATGGTCTTTTTCTCA 59.347 43.478 0.00 0.00 43.62 3.27
5193 5654 4.006319 GGACAGGATGGTCTTTTTCTCAG 58.994 47.826 0.00 0.00 43.62 3.35
5194 5655 4.263068 GGACAGGATGGTCTTTTTCTCAGA 60.263 45.833 0.00 0.00 43.62 3.27
5195 5656 4.904241 ACAGGATGGTCTTTTTCTCAGAG 58.096 43.478 0.00 0.00 43.62 3.35
5196 5657 4.349342 ACAGGATGGTCTTTTTCTCAGAGT 59.651 41.667 0.00 0.00 43.62 3.24
5197 5658 5.544176 ACAGGATGGTCTTTTTCTCAGAGTA 59.456 40.000 0.00 0.00 43.62 2.59
5198 5659 5.872070 CAGGATGGTCTTTTTCTCAGAGTAC 59.128 44.000 0.00 0.00 0.00 2.73
5199 5660 5.782845 AGGATGGTCTTTTTCTCAGAGTACT 59.217 40.000 0.00 0.00 0.00 2.73
5200 5661 6.271159 AGGATGGTCTTTTTCTCAGAGTACTT 59.729 38.462 0.00 0.00 0.00 2.24
5201 5662 7.455008 AGGATGGTCTTTTTCTCAGAGTACTTA 59.545 37.037 0.00 0.00 0.00 2.24
5202 5663 7.762159 GGATGGTCTTTTTCTCAGAGTACTTAG 59.238 40.741 0.00 0.00 0.00 2.18
5203 5664 7.598759 TGGTCTTTTTCTCAGAGTACTTAGT 57.401 36.000 0.00 0.00 0.00 2.24
5204 5665 7.659186 TGGTCTTTTTCTCAGAGTACTTAGTC 58.341 38.462 0.00 0.00 0.00 2.59
5205 5666 7.092079 GGTCTTTTTCTCAGAGTACTTAGTCC 58.908 42.308 0.00 0.00 0.00 3.85
5206 5667 6.802834 GTCTTTTTCTCAGAGTACTTAGTCCG 59.197 42.308 0.00 0.00 0.00 4.79
5207 5668 6.489361 TCTTTTTCTCAGAGTACTTAGTCCGT 59.511 38.462 0.00 0.00 0.00 4.69
5208 5669 5.624344 TTTCTCAGAGTACTTAGTCCGTG 57.376 43.478 0.00 0.00 0.00 4.94
5209 5670 3.008330 TCTCAGAGTACTTAGTCCGTGC 58.992 50.000 0.00 0.00 0.00 5.34
5210 5671 3.011119 CTCAGAGTACTTAGTCCGTGCT 58.989 50.000 0.00 0.00 0.00 4.40
5211 5672 2.747989 TCAGAGTACTTAGTCCGTGCTG 59.252 50.000 0.00 0.00 0.00 4.41
5212 5673 2.093106 AGAGTACTTAGTCCGTGCTGG 58.907 52.381 0.00 0.00 40.09 4.85
5213 5674 1.817447 GAGTACTTAGTCCGTGCTGGT 59.183 52.381 0.00 0.00 39.52 4.00
5214 5675 3.012518 GAGTACTTAGTCCGTGCTGGTA 58.987 50.000 0.00 0.00 39.52 3.25
5215 5676 3.424703 AGTACTTAGTCCGTGCTGGTAA 58.575 45.455 0.00 0.00 39.52 2.85
5216 5677 4.021916 AGTACTTAGTCCGTGCTGGTAAT 58.978 43.478 0.00 0.00 39.52 1.89
5217 5678 3.975168 ACTTAGTCCGTGCTGGTAATT 57.025 42.857 0.00 0.00 39.52 1.40
5218 5679 3.858247 ACTTAGTCCGTGCTGGTAATTC 58.142 45.455 0.00 0.00 39.52 2.17
5219 5680 2.973694 TAGTCCGTGCTGGTAATTCC 57.026 50.000 0.00 0.00 39.52 3.01
5220 5681 0.108329 AGTCCGTGCTGGTAATTCCG 60.108 55.000 0.00 0.00 39.52 4.30
5221 5682 1.087771 GTCCGTGCTGGTAATTCCGG 61.088 60.000 0.00 0.00 45.06 5.14
5222 5683 1.078708 CCGTGCTGGTAATTCCGGT 60.079 57.895 0.00 0.00 44.16 5.28
5223 5684 0.176219 CCGTGCTGGTAATTCCGGTA 59.824 55.000 0.00 0.00 44.16 4.02
5224 5685 1.405797 CCGTGCTGGTAATTCCGGTAA 60.406 52.381 0.00 0.00 44.16 2.85
5225 5686 1.931172 CGTGCTGGTAATTCCGGTAAG 59.069 52.381 0.00 0.00 44.16 2.34
5226 5687 2.675889 CGTGCTGGTAATTCCGGTAAGT 60.676 50.000 0.00 0.00 44.16 2.24
5227 5688 3.340928 GTGCTGGTAATTCCGGTAAGTT 58.659 45.455 0.00 0.00 44.16 2.66
5228 5689 3.754850 GTGCTGGTAATTCCGGTAAGTTT 59.245 43.478 0.00 0.00 44.16 2.66
5229 5690 4.216902 GTGCTGGTAATTCCGGTAAGTTTT 59.783 41.667 0.00 0.00 44.16 2.43
5230 5691 4.828387 TGCTGGTAATTCCGGTAAGTTTTT 59.172 37.500 0.00 0.00 44.16 1.94
5231 5692 6.002704 TGCTGGTAATTCCGGTAAGTTTTTA 58.997 36.000 0.00 0.00 44.16 1.52
5232 5693 6.660094 TGCTGGTAATTCCGGTAAGTTTTTAT 59.340 34.615 0.00 0.00 44.16 1.40
5233 5694 7.177041 TGCTGGTAATTCCGGTAAGTTTTTATT 59.823 33.333 0.00 0.00 44.16 1.40
5234 5695 7.699391 GCTGGTAATTCCGGTAAGTTTTTATTC 59.301 37.037 0.00 0.00 44.16 1.75
5235 5696 8.866970 TGGTAATTCCGGTAAGTTTTTATTCT 57.133 30.769 0.00 0.00 39.52 2.40
5236 5697 9.299465 TGGTAATTCCGGTAAGTTTTTATTCTT 57.701 29.630 0.00 0.00 39.52 2.52
5237 5698 9.778993 GGTAATTCCGGTAAGTTTTTATTCTTC 57.221 33.333 0.00 0.00 0.00 2.87
5240 5701 8.857694 ATTCCGGTAAGTTTTTATTCTTCAGA 57.142 30.769 0.00 0.00 0.00 3.27
5241 5702 7.900782 TCCGGTAAGTTTTTATTCTTCAGAG 57.099 36.000 0.00 0.00 0.00 3.35
5242 5703 7.673180 TCCGGTAAGTTTTTATTCTTCAGAGA 58.327 34.615 0.00 0.00 0.00 3.10
5243 5704 8.152246 TCCGGTAAGTTTTTATTCTTCAGAGAA 58.848 33.333 0.00 0.00 45.45 2.87
5244 5705 8.443937 CCGGTAAGTTTTTATTCTTCAGAGAAG 58.556 37.037 0.00 0.39 44.65 2.85
5245 5706 9.204570 CGGTAAGTTTTTATTCTTCAGAGAAGA 57.795 33.333 5.41 5.41 44.65 2.87
5252 5713 9.495572 TTTTTATTCTTCAGAGAAGAGAACTCC 57.504 33.333 9.17 0.00 44.65 3.85
5253 5714 4.775058 TTCTTCAGAGAAGAGAACTCCG 57.225 45.455 9.17 0.00 36.99 4.63
5254 5715 3.085533 TCTTCAGAGAAGAGAACTCCGG 58.914 50.000 5.41 0.00 35.27 5.14
5255 5716 2.588464 TCAGAGAAGAGAACTCCGGT 57.412 50.000 0.00 0.00 35.27 5.28
5256 5717 3.715638 TCAGAGAAGAGAACTCCGGTA 57.284 47.619 0.00 0.00 35.27 4.02
5257 5718 4.030314 TCAGAGAAGAGAACTCCGGTAA 57.970 45.455 0.00 0.00 35.27 2.85
5258 5719 4.011023 TCAGAGAAGAGAACTCCGGTAAG 58.989 47.826 0.00 0.00 35.27 2.34
5259 5720 3.759618 CAGAGAAGAGAACTCCGGTAAGT 59.240 47.826 0.00 0.00 35.27 2.24
5260 5721 3.759618 AGAGAAGAGAACTCCGGTAAGTG 59.240 47.826 0.00 0.00 35.27 3.16
5261 5722 2.826725 AGAAGAGAACTCCGGTAAGTGG 59.173 50.000 0.00 0.00 0.00 4.00
5262 5723 2.305858 AGAGAACTCCGGTAAGTGGT 57.694 50.000 0.00 0.00 0.00 4.16
5263 5724 2.169330 AGAGAACTCCGGTAAGTGGTC 58.831 52.381 0.00 0.00 0.00 4.02
5264 5725 2.169330 GAGAACTCCGGTAAGTGGTCT 58.831 52.381 0.00 0.00 0.00 3.85
5265 5726 3.009916 AGAGAACTCCGGTAAGTGGTCTA 59.990 47.826 0.00 0.00 0.00 2.59
5266 5727 3.087781 AGAACTCCGGTAAGTGGTCTAC 58.912 50.000 0.00 0.00 0.00 2.59
5267 5728 1.457346 ACTCCGGTAAGTGGTCTACG 58.543 55.000 0.00 0.00 0.00 3.51
5268 5729 1.271597 ACTCCGGTAAGTGGTCTACGT 60.272 52.381 0.00 0.00 0.00 3.57
5269 5730 2.027192 ACTCCGGTAAGTGGTCTACGTA 60.027 50.000 0.00 0.00 0.00 3.57
5270 5731 2.352960 CTCCGGTAAGTGGTCTACGTAC 59.647 54.545 0.00 4.23 41.63 3.67
5271 5732 1.062587 CCGGTAAGTGGTCTACGTACG 59.937 57.143 15.01 15.01 42.77 3.67
5272 5733 1.999735 CGGTAAGTGGTCTACGTACGA 59.000 52.381 24.41 4.69 42.77 3.43
5273 5734 2.609459 CGGTAAGTGGTCTACGTACGAT 59.391 50.000 24.41 8.93 42.77 3.73
5274 5735 3.544834 CGGTAAGTGGTCTACGTACGATG 60.545 52.174 24.41 13.70 42.77 3.84
5275 5736 2.556534 AAGTGGTCTACGTACGATGC 57.443 50.000 24.41 8.66 0.00 3.91
5276 5737 1.747709 AGTGGTCTACGTACGATGCT 58.252 50.000 24.41 1.05 0.00 3.79
5277 5738 2.910199 AGTGGTCTACGTACGATGCTA 58.090 47.619 24.41 2.40 0.00 3.49
5278 5739 2.611292 AGTGGTCTACGTACGATGCTAC 59.389 50.000 24.41 15.43 0.00 3.58
5279 5740 1.942657 TGGTCTACGTACGATGCTACC 59.057 52.381 24.41 19.64 0.00 3.18
5280 5741 2.216898 GGTCTACGTACGATGCTACCT 58.783 52.381 24.41 0.00 0.00 3.08
5281 5742 2.032204 GGTCTACGTACGATGCTACCTG 60.032 54.545 24.41 1.13 0.00 4.00
5282 5743 2.032204 GTCTACGTACGATGCTACCTGG 60.032 54.545 24.41 0.00 0.00 4.45
5283 5744 1.266175 CTACGTACGATGCTACCTGGG 59.734 57.143 24.41 0.00 0.00 4.45
5284 5745 1.299926 CGTACGATGCTACCTGGGC 60.300 63.158 10.44 0.00 0.00 5.36
5285 5746 1.820581 GTACGATGCTACCTGGGCA 59.179 57.895 0.00 0.00 44.05 5.36
5286 5747 0.177141 GTACGATGCTACCTGGGCAA 59.823 55.000 1.71 0.00 43.14 4.52
5287 5748 0.464036 TACGATGCTACCTGGGCAAG 59.536 55.000 1.71 2.79 43.14 4.01
5288 5749 1.264749 ACGATGCTACCTGGGCAAGA 61.265 55.000 1.71 0.00 43.14 3.02
5289 5750 0.107703 CGATGCTACCTGGGCAAGAA 60.108 55.000 1.71 0.00 43.14 2.52
5290 5751 1.673168 GATGCTACCTGGGCAAGAAG 58.327 55.000 1.71 0.00 43.14 2.85
5291 5752 0.995024 ATGCTACCTGGGCAAGAAGT 59.005 50.000 1.71 0.00 43.14 3.01
5292 5753 0.324943 TGCTACCTGGGCAAGAAGTC 59.675 55.000 0.00 0.00 36.71 3.01
5293 5754 0.324943 GCTACCTGGGCAAGAAGTCA 59.675 55.000 0.00 0.00 0.00 3.41
5294 5755 1.271379 GCTACCTGGGCAAGAAGTCAA 60.271 52.381 0.00 0.00 0.00 3.18
5295 5756 2.427506 CTACCTGGGCAAGAAGTCAAC 58.572 52.381 0.00 0.00 0.00 3.18
5296 5757 0.535102 ACCTGGGCAAGAAGTCAACG 60.535 55.000 0.00 0.00 0.00 4.10
5297 5758 0.535102 CCTGGGCAAGAAGTCAACGT 60.535 55.000 0.00 0.00 0.00 3.99
5298 5759 1.308998 CTGGGCAAGAAGTCAACGTT 58.691 50.000 0.00 0.00 0.00 3.99
5299 5760 1.676006 CTGGGCAAGAAGTCAACGTTT 59.324 47.619 0.00 0.00 0.00 3.60
5300 5761 2.096248 TGGGCAAGAAGTCAACGTTTT 58.904 42.857 0.00 0.00 0.00 2.43
5301 5762 2.159310 TGGGCAAGAAGTCAACGTTTTG 60.159 45.455 0.00 0.34 0.00 2.44
5302 5763 1.852280 GGCAAGAAGTCAACGTTTTGC 59.148 47.619 19.77 19.77 39.96 3.68
5303 5764 2.525055 GCAAGAAGTCAACGTTTTGCA 58.475 42.857 21.92 0.00 40.30 4.08
5304 5765 2.278875 GCAAGAAGTCAACGTTTTGCAC 59.721 45.455 21.92 7.93 40.30 4.57
5305 5766 2.844122 AGAAGTCAACGTTTTGCACC 57.156 45.000 0.00 0.00 32.17 5.01
5306 5767 2.365582 AGAAGTCAACGTTTTGCACCT 58.634 42.857 0.00 0.00 32.17 4.00
5307 5768 2.097466 AGAAGTCAACGTTTTGCACCTG 59.903 45.455 0.00 0.00 32.17 4.00
5308 5769 0.738389 AGTCAACGTTTTGCACCTGG 59.262 50.000 0.00 0.00 32.17 4.45
5309 5770 0.248866 GTCAACGTTTTGCACCTGGG 60.249 55.000 0.00 0.00 32.17 4.45
5310 5771 1.591327 CAACGTTTTGCACCTGGGC 60.591 57.895 0.00 0.00 0.00 5.36
5311 5772 3.132481 AACGTTTTGCACCTGGGCG 62.132 57.895 0.00 0.00 36.28 6.13
5312 5773 4.341502 CGTTTTGCACCTGGGCGG 62.342 66.667 0.00 0.00 36.28 6.13
5313 5774 4.662961 GTTTTGCACCTGGGCGGC 62.663 66.667 0.00 0.00 36.28 6.53
5314 5775 4.912395 TTTTGCACCTGGGCGGCT 62.912 61.111 9.56 0.00 36.28 5.52
5344 5805 4.067913 CCCATTTGTGGGTGCGCC 62.068 66.667 8.12 8.12 44.08 6.53
5345 5806 4.418401 CCATTTGTGGGTGCGCCG 62.418 66.667 10.86 0.00 34.97 6.46
5353 5814 3.747976 GGGTGCGCCGCTTTCAAT 61.748 61.111 11.67 0.00 34.97 2.57
5354 5815 2.504681 GGTGCGCCGCTTTCAATG 60.505 61.111 11.67 0.00 0.00 2.82
5355 5816 2.504681 GTGCGCCGCTTTCAATGG 60.505 61.111 11.67 0.00 0.00 3.16
5356 5817 3.746889 TGCGCCGCTTTCAATGGG 61.747 61.111 11.67 0.00 0.00 4.00
5357 5818 3.439540 GCGCCGCTTTCAATGGGA 61.440 61.111 0.00 0.00 0.00 4.37
5358 5819 2.793946 CGCCGCTTTCAATGGGAG 59.206 61.111 0.00 0.00 0.00 4.30
5359 5820 1.745115 CGCCGCTTTCAATGGGAGA 60.745 57.895 0.00 0.00 0.00 3.71
5360 5821 1.305219 CGCCGCTTTCAATGGGAGAA 61.305 55.000 0.00 0.00 0.00 2.87
5361 5822 0.887933 GCCGCTTTCAATGGGAGAAA 59.112 50.000 0.00 0.00 34.16 2.52
5362 5823 1.272212 GCCGCTTTCAATGGGAGAAAA 59.728 47.619 0.00 0.00 34.84 2.29
5363 5824 2.288763 GCCGCTTTCAATGGGAGAAAAA 60.289 45.455 0.00 0.00 34.84 1.94
5364 5825 3.617288 GCCGCTTTCAATGGGAGAAAAAT 60.617 43.478 0.00 0.00 34.84 1.82
5365 5826 4.568956 CCGCTTTCAATGGGAGAAAAATT 58.431 39.130 0.00 0.00 34.84 1.82
5366 5827 4.389687 CCGCTTTCAATGGGAGAAAAATTG 59.610 41.667 0.00 0.00 34.84 2.32
5367 5828 4.143052 CGCTTTCAATGGGAGAAAAATTGC 60.143 41.667 0.00 0.00 34.84 3.56
5368 5829 4.143052 GCTTTCAATGGGAGAAAAATTGCG 60.143 41.667 0.00 0.00 34.84 4.85
5369 5830 4.862902 TTCAATGGGAGAAAAATTGCGA 57.137 36.364 0.00 0.00 32.50 5.10
5370 5831 4.439305 TCAATGGGAGAAAAATTGCGAG 57.561 40.909 0.00 0.00 32.50 5.03
5371 5832 4.078537 TCAATGGGAGAAAAATTGCGAGA 58.921 39.130 0.00 0.00 32.50 4.04
5372 5833 4.522405 TCAATGGGAGAAAAATTGCGAGAA 59.478 37.500 0.00 0.00 32.50 2.87
5373 5834 5.010516 TCAATGGGAGAAAAATTGCGAGAAA 59.989 36.000 0.00 0.00 32.50 2.52
5374 5835 4.927978 TGGGAGAAAAATTGCGAGAAAA 57.072 36.364 0.00 0.00 0.00 2.29
5375 5836 5.269505 TGGGAGAAAAATTGCGAGAAAAA 57.730 34.783 0.00 0.00 0.00 1.94
5395 5856 4.335735 AAAATGAGGGTGATGGGAATCA 57.664 40.909 0.00 0.00 0.00 2.57
5396 5857 4.335735 AAATGAGGGTGATGGGAATCAA 57.664 40.909 0.00 0.00 31.60 2.57
5397 5858 4.335735 AATGAGGGTGATGGGAATCAAA 57.664 40.909 0.00 0.00 31.60 2.69
5398 5859 3.085952 TGAGGGTGATGGGAATCAAAC 57.914 47.619 0.00 0.00 31.60 2.93
5399 5860 2.291540 TGAGGGTGATGGGAATCAAACC 60.292 50.000 3.65 3.65 36.17 3.27
5400 5861 1.485124 GGGTGATGGGAATCAAACCC 58.515 55.000 0.00 0.00 44.16 4.11
5405 5866 2.874751 GGGAATCAAACCCGCACG 59.125 61.111 0.00 0.00 37.85 5.34
5406 5867 1.969589 GGGAATCAAACCCGCACGT 60.970 57.895 0.00 0.00 37.85 4.49
5407 5868 1.520600 GGGAATCAAACCCGCACGTT 61.521 55.000 0.00 0.00 37.85 3.99
5408 5869 0.109919 GGAATCAAACCCGCACGTTC 60.110 55.000 0.00 0.00 0.00 3.95
5409 5870 0.109919 GAATCAAACCCGCACGTTCC 60.110 55.000 0.00 0.00 0.00 3.62
5410 5871 0.820074 AATCAAACCCGCACGTTCCA 60.820 50.000 0.00 0.00 0.00 3.53
5411 5872 1.234615 ATCAAACCCGCACGTTCCAG 61.235 55.000 0.00 0.00 0.00 3.86
5412 5873 2.184167 CAAACCCGCACGTTCCAGT 61.184 57.895 0.00 0.00 0.00 4.00
5413 5874 1.452470 AAACCCGCACGTTCCAGTT 60.452 52.632 0.00 0.00 0.00 3.16
5414 5875 1.033202 AAACCCGCACGTTCCAGTTT 61.033 50.000 0.00 0.00 0.00 2.66
5415 5876 0.179051 AACCCGCACGTTCCAGTTTA 60.179 50.000 0.00 0.00 0.00 2.01
5416 5877 0.035739 ACCCGCACGTTCCAGTTTAT 59.964 50.000 0.00 0.00 0.00 1.40
5417 5878 0.446222 CCCGCACGTTCCAGTTTATG 59.554 55.000 0.00 0.00 0.00 1.90
5418 5879 1.153353 CCGCACGTTCCAGTTTATGT 58.847 50.000 0.00 0.00 0.00 2.29
5419 5880 1.136085 CCGCACGTTCCAGTTTATGTG 60.136 52.381 0.00 0.00 35.02 3.21
5420 5881 1.963747 GCACGTTCCAGTTTATGTGC 58.036 50.000 0.00 0.00 46.31 4.57
5422 5883 2.916111 CACGTTCCAGTTTATGTGCAC 58.084 47.619 10.75 10.75 0.00 4.57
5423 5884 1.529438 ACGTTCCAGTTTATGTGCACG 59.471 47.619 13.13 0.00 0.00 5.34
5424 5885 1.724654 CGTTCCAGTTTATGTGCACGC 60.725 52.381 13.13 0.00 0.00 5.34
5425 5886 1.535462 GTTCCAGTTTATGTGCACGCT 59.465 47.619 13.13 4.56 0.00 5.07
5426 5887 1.155889 TCCAGTTTATGTGCACGCTG 58.844 50.000 13.13 13.78 0.00 5.18
5427 5888 0.874390 CCAGTTTATGTGCACGCTGT 59.126 50.000 13.13 0.62 0.00 4.40
5428 5889 1.400113 CCAGTTTATGTGCACGCTGTG 60.400 52.381 13.13 4.67 36.51 3.66
5437 5898 4.361253 CACGCTGTGCTAACCACT 57.639 55.556 0.00 0.00 44.92 4.00
5438 5899 1.862123 CACGCTGTGCTAACCACTG 59.138 57.895 0.00 0.00 44.92 3.66
5439 5900 1.301716 ACGCTGTGCTAACCACTGG 60.302 57.895 0.00 0.00 44.92 4.00
5440 5901 2.034879 CGCTGTGCTAACCACTGGG 61.035 63.158 0.00 3.77 44.92 4.45
5441 5902 1.374947 GCTGTGCTAACCACTGGGA 59.625 57.895 0.00 0.00 44.92 4.37
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.290605 AGCTTGAAATGCCTACAAAATGTTT 58.709 32.000 0.00 0.00 37.80 2.83
1 2 5.857268 AGCTTGAAATGCCTACAAAATGTT 58.143 33.333 0.00 0.00 37.80 2.71
2 3 5.473066 AGCTTGAAATGCCTACAAAATGT 57.527 34.783 0.00 0.00 37.80 2.71
3 4 6.347888 CCAAAGCTTGAAATGCCTACAAAATG 60.348 38.462 0.00 0.00 37.80 2.32
4 5 5.702209 CCAAAGCTTGAAATGCCTACAAAAT 59.298 36.000 0.00 0.00 37.80 1.82
5 6 5.055812 CCAAAGCTTGAAATGCCTACAAAA 58.944 37.500 0.00 0.00 37.80 2.44
6 7 4.343526 TCCAAAGCTTGAAATGCCTACAAA 59.656 37.500 0.00 0.00 37.80 2.83
7 8 3.894427 TCCAAAGCTTGAAATGCCTACAA 59.106 39.130 0.00 0.00 37.80 2.41
8 9 3.495331 TCCAAAGCTTGAAATGCCTACA 58.505 40.909 0.00 0.00 37.80 2.74
9 10 3.119352 CCTCCAAAGCTTGAAATGCCTAC 60.119 47.826 0.00 0.00 37.80 3.18
10 11 3.091545 CCTCCAAAGCTTGAAATGCCTA 58.908 45.455 0.00 0.00 37.80 3.93
11 12 1.897802 CCTCCAAAGCTTGAAATGCCT 59.102 47.619 0.00 0.00 37.80 4.75
12 13 1.673923 GCCTCCAAAGCTTGAAATGCC 60.674 52.381 0.00 0.00 37.80 4.40
13 14 1.274447 AGCCTCCAAAGCTTGAAATGC 59.726 47.619 0.00 0.68 37.24 3.56
21 22 1.133356 ACCTTGAAAGCCTCCAAAGCT 60.133 47.619 0.00 0.00 44.19 3.74
22 23 1.332195 ACCTTGAAAGCCTCCAAAGC 58.668 50.000 0.00 0.00 0.00 3.51
23 24 2.958355 TGAACCTTGAAAGCCTCCAAAG 59.042 45.455 0.00 0.00 0.00 2.77
24 25 3.025322 TGAACCTTGAAAGCCTCCAAA 57.975 42.857 0.00 0.00 0.00 3.28
25 26 2.693074 GTTGAACCTTGAAAGCCTCCAA 59.307 45.455 0.00 0.00 0.00 3.53
26 27 2.306847 GTTGAACCTTGAAAGCCTCCA 58.693 47.619 0.00 0.00 0.00 3.86
27 28 2.034685 GTGTTGAACCTTGAAAGCCTCC 59.965 50.000 0.00 0.00 0.00 4.30
28 29 2.687935 TGTGTTGAACCTTGAAAGCCTC 59.312 45.455 0.00 0.00 0.00 4.70
29 30 2.733956 TGTGTTGAACCTTGAAAGCCT 58.266 42.857 0.00 0.00 0.00 4.58
30 31 3.518634 TTGTGTTGAACCTTGAAAGCC 57.481 42.857 0.00 0.00 0.00 4.35
31 32 3.803778 CCATTGTGTTGAACCTTGAAAGC 59.196 43.478 0.00 0.00 0.00 3.51
32 33 3.803778 GCCATTGTGTTGAACCTTGAAAG 59.196 43.478 0.00 0.00 0.00 2.62
33 34 3.196469 TGCCATTGTGTTGAACCTTGAAA 59.804 39.130 0.00 0.00 0.00 2.69
34 35 2.762887 TGCCATTGTGTTGAACCTTGAA 59.237 40.909 0.00 0.00 0.00 2.69
35 36 2.382882 TGCCATTGTGTTGAACCTTGA 58.617 42.857 0.00 0.00 0.00 3.02
36 37 2.886862 TGCCATTGTGTTGAACCTTG 57.113 45.000 0.00 0.00 0.00 3.61
37 38 2.765699 ACTTGCCATTGTGTTGAACCTT 59.234 40.909 0.00 0.00 0.00 3.50
38 39 2.101249 CACTTGCCATTGTGTTGAACCT 59.899 45.455 0.00 0.00 0.00 3.50
39 40 2.472816 CACTTGCCATTGTGTTGAACC 58.527 47.619 0.00 0.00 0.00 3.62
40 41 1.860326 GCACTTGCCATTGTGTTGAAC 59.140 47.619 0.00 0.00 36.63 3.18
41 42 1.755959 AGCACTTGCCATTGTGTTGAA 59.244 42.857 0.00 0.00 43.38 2.69
42 43 1.401761 AGCACTTGCCATTGTGTTGA 58.598 45.000 0.00 0.00 43.38 3.18
43 44 2.129607 GAAGCACTTGCCATTGTGTTG 58.870 47.619 0.00 0.00 43.38 3.33
44 45 1.755959 TGAAGCACTTGCCATTGTGTT 59.244 42.857 0.00 0.00 43.38 3.32
45 46 1.401761 TGAAGCACTTGCCATTGTGT 58.598 45.000 0.00 0.00 43.38 3.72
46 47 2.129607 GTTGAAGCACTTGCCATTGTG 58.870 47.619 0.00 0.00 43.38 3.33
47 48 1.069049 GGTTGAAGCACTTGCCATTGT 59.931 47.619 0.00 0.00 43.38 2.71
48 49 1.342174 AGGTTGAAGCACTTGCCATTG 59.658 47.619 0.00 0.00 43.38 2.82
49 50 1.708341 AGGTTGAAGCACTTGCCATT 58.292 45.000 0.00 0.00 43.38 3.16
50 51 1.708341 AAGGTTGAAGCACTTGCCAT 58.292 45.000 0.00 0.00 43.38 4.40
51 52 1.408702 GAAAGGTTGAAGCACTTGCCA 59.591 47.619 0.00 0.00 43.38 4.92
52 53 1.269778 GGAAAGGTTGAAGCACTTGCC 60.270 52.381 0.00 0.00 43.38 4.52
53 54 1.269778 GGGAAAGGTTGAAGCACTTGC 60.270 52.381 0.00 0.00 42.49 4.01
54 55 2.031120 TGGGAAAGGTTGAAGCACTTG 58.969 47.619 0.00 0.00 0.00 3.16
55 56 2.452600 TGGGAAAGGTTGAAGCACTT 57.547 45.000 0.00 0.00 0.00 3.16
56 57 2.629617 CAATGGGAAAGGTTGAAGCACT 59.370 45.455 0.00 0.00 0.00 4.40
57 58 2.867647 GCAATGGGAAAGGTTGAAGCAC 60.868 50.000 0.00 0.00 0.00 4.40
58 59 1.344114 GCAATGGGAAAGGTTGAAGCA 59.656 47.619 0.00 0.00 0.00 3.91
59 60 1.620323 AGCAATGGGAAAGGTTGAAGC 59.380 47.619 0.00 0.00 0.00 3.86
60 61 4.335416 TCTAGCAATGGGAAAGGTTGAAG 58.665 43.478 0.00 0.00 0.00 3.02
61 62 4.042809 TCTCTAGCAATGGGAAAGGTTGAA 59.957 41.667 0.00 0.00 0.00 2.69
62 63 3.587061 TCTCTAGCAATGGGAAAGGTTGA 59.413 43.478 0.00 0.00 0.00 3.18
63 64 3.955471 TCTCTAGCAATGGGAAAGGTTG 58.045 45.455 0.00 0.00 0.00 3.77
64 65 4.684485 CGATCTCTAGCAATGGGAAAGGTT 60.684 45.833 0.00 0.00 0.00 3.50
65 66 3.181461 CGATCTCTAGCAATGGGAAAGGT 60.181 47.826 0.00 0.00 0.00 3.50
66 67 3.070159 TCGATCTCTAGCAATGGGAAAGG 59.930 47.826 0.00 0.00 0.00 3.11
67 68 4.305769 CTCGATCTCTAGCAATGGGAAAG 58.694 47.826 0.00 0.00 0.00 2.62
68 69 3.070159 CCTCGATCTCTAGCAATGGGAAA 59.930 47.826 0.00 0.00 0.00 3.13
69 70 2.630098 CCTCGATCTCTAGCAATGGGAA 59.370 50.000 0.00 0.00 0.00 3.97
70 71 2.242926 CCTCGATCTCTAGCAATGGGA 58.757 52.381 0.00 0.00 0.00 4.37
71 72 1.337635 GCCTCGATCTCTAGCAATGGG 60.338 57.143 0.00 0.00 0.00 4.00
72 73 1.337635 GGCCTCGATCTCTAGCAATGG 60.338 57.143 0.00 0.00 0.00 3.16
73 74 1.668337 CGGCCTCGATCTCTAGCAATG 60.668 57.143 0.00 0.00 39.00 2.82
74 75 0.600557 CGGCCTCGATCTCTAGCAAT 59.399 55.000 0.00 0.00 39.00 3.56
75 76 2.033793 CGGCCTCGATCTCTAGCAA 58.966 57.895 0.00 0.00 39.00 3.91
120 121 1.409064 CATCATGCTTGCAAGAGCCAT 59.591 47.619 30.39 19.62 42.01 4.40
188 190 0.882927 TCTCGAACCACGGCCTTTTG 60.883 55.000 0.00 0.00 42.82 2.44
191 193 1.004918 CTTCTCGAACCACGGCCTT 60.005 57.895 0.00 0.00 42.82 4.35
600 609 2.065906 AAACGGACGGCGCATTTGTT 62.066 50.000 10.83 3.94 0.00 2.83
624 633 1.000396 GAGCAACTCCAATGGGGCT 60.000 57.895 0.00 3.59 36.21 5.19
647 656 4.641989 ACTCACTTCAGCACACAAAGAATT 59.358 37.500 0.00 0.00 0.00 2.17
648 657 4.202441 ACTCACTTCAGCACACAAAGAAT 58.798 39.130 0.00 0.00 0.00 2.40
649 658 3.609853 ACTCACTTCAGCACACAAAGAA 58.390 40.909 0.00 0.00 0.00 2.52
650 659 3.198068 GACTCACTTCAGCACACAAAGA 58.802 45.455 0.00 0.00 0.00 2.52
651 660 2.938451 TGACTCACTTCAGCACACAAAG 59.062 45.455 0.00 0.00 0.00 2.77
652 661 2.938451 CTGACTCACTTCAGCACACAAA 59.062 45.455 0.00 0.00 36.83 2.83
653 662 2.554142 CTGACTCACTTCAGCACACAA 58.446 47.619 0.00 0.00 36.83 3.33
654 663 1.202568 CCTGACTCACTTCAGCACACA 60.203 52.381 0.00 0.00 41.61 3.72
655 664 1.506493 CCTGACTCACTTCAGCACAC 58.494 55.000 0.00 0.00 41.61 3.82
662 671 0.952984 GTGCAGGCCTGACTCACTTC 60.953 60.000 37.21 16.08 0.00 3.01
667 676 2.046507 CCTGTGCAGGCCTGACTC 60.047 66.667 37.21 25.17 42.44 3.36
687 696 1.079503 GTGCATGGACCGAACTCTTC 58.920 55.000 5.98 0.00 0.00 2.87
689 698 1.296715 GGTGCATGGACCGAACTCT 59.703 57.895 21.48 0.00 0.00 3.24
711 720 1.064952 ACTTTTGTTTTCGGTCCTGCG 59.935 47.619 0.00 0.00 0.00 5.18
742 757 1.146707 TAAAATAGGACGGGCCGGC 59.853 57.895 31.78 29.74 43.43 6.13
753 768 6.250527 CGGGAACTGAAAAATGCGTAAAATAG 59.749 38.462 0.00 0.00 36.31 1.73
769 784 2.122769 TGGGTCCACGGGAACTGA 60.123 61.111 7.75 0.00 39.79 3.41
770 785 2.347490 CTGGGTCCACGGGAACTG 59.653 66.667 7.75 0.00 39.79 3.16
772 787 3.948719 TGCTGGGTCCACGGGAAC 61.949 66.667 0.00 0.00 39.01 3.62
1446 1484 2.895372 GCACGCACCTTATCCCGG 60.895 66.667 0.00 0.00 0.00 5.73
1503 1541 9.895138 TTATTACAGAGGGAGTACAATAAAACC 57.105 33.333 0.00 0.00 0.00 3.27
1536 1574 9.953697 CTAAAGTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 0.00 1.73
1537 1575 8.954350 ACTAAAGTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 37.69 2.10
1538 1576 7.828712 ACTAAAGTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 37.69 2.85
1539 1577 7.393841 ACTAAAGTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 37.69 4.09
1540 1578 8.373992 CAAACTAAAGTAGTGATCTAAACGCTC 58.626 37.037 0.00 0.00 39.39 5.03
1541 1579 7.148623 GCAAACTAAAGTAGTGATCTAAACGCT 60.149 37.037 0.00 0.00 39.39 5.07
1542 1580 6.954297 GCAAACTAAAGTAGTGATCTAAACGC 59.046 38.462 0.00 0.00 39.39 4.84
1543 1581 8.014322 TGCAAACTAAAGTAGTGATCTAAACG 57.986 34.615 0.00 0.00 39.39 3.60
1546 1584 9.555727 ACTTTGCAAACTAAAGTAGTGATCTAA 57.444 29.630 8.05 0.00 44.19 2.10
1556 1594 7.936584 TGCTTACATACTTTGCAAACTAAAGT 58.063 30.769 8.05 6.88 46.69 2.66
1557 1595 8.690840 GTTGCTTACATACTTTGCAAACTAAAG 58.309 33.333 8.05 0.00 43.72 1.85
1558 1596 8.191446 TGTTGCTTACATACTTTGCAAACTAAA 58.809 29.630 8.05 0.00 43.72 1.85
1559 1597 7.646130 GTGTTGCTTACATACTTTGCAAACTAA 59.354 33.333 8.05 0.00 43.72 2.24
1586 1624 2.158900 CCGGTGAAGACTCCAAGCATAT 60.159 50.000 0.00 0.00 0.00 1.78
1606 1644 2.893489 ACTCTGGCAATTCAAAGGAACC 59.107 45.455 0.00 0.00 35.46 3.62
1921 1970 0.105964 TTTGTGAGTGCAGCGTAGGT 59.894 50.000 0.00 0.00 41.48 3.08
1927 1976 1.942657 TCTGAAGTTTGTGAGTGCAGC 59.057 47.619 0.00 0.00 34.70 5.25
1953 2003 5.051973 TGCTACAATCGATACGAATTTGACG 60.052 40.000 0.00 2.94 39.99 4.35
1960 2010 4.927422 TGTGATGCTACAATCGATACGAA 58.073 39.130 0.00 0.00 39.99 3.85
2013 2071 1.845791 TGCTCCAAGCCTCCAATGATA 59.154 47.619 0.00 0.00 41.51 2.15
2035 2094 9.734620 TTCAAACTTAAGAATTTGACAGTGATG 57.265 29.630 16.65 0.00 42.87 3.07
2041 2100 7.889873 TCCCTTCAAACTTAAGAATTTGACA 57.110 32.000 16.65 9.97 42.87 3.58
2042 2101 9.594478 TTTTCCCTTCAAACTTAAGAATTTGAC 57.406 29.630 16.65 0.00 42.87 3.18
2064 2123 8.926715 ACAGACAAAGGTAATTGTTCTTTTTC 57.073 30.769 0.00 0.00 43.31 2.29
2080 2140 7.041508 AGCAAACTCAGAAGATAACAGACAAAG 60.042 37.037 0.00 0.00 0.00 2.77
2140 2205 5.763355 AGGAAATCACCATCAGATTCATGT 58.237 37.500 0.00 0.00 34.78 3.21
2141 2206 5.826208 TGAGGAAATCACCATCAGATTCATG 59.174 40.000 0.00 0.00 34.78 3.07
2193 2258 2.094700 TGTTAGCTCTAGGTGCGTTGAG 60.095 50.000 0.00 0.00 35.28 3.02
2221 2286 3.608316 TGCCAAAGAACTGCAAAACTT 57.392 38.095 0.00 0.00 30.85 2.66
2251 2316 3.819368 TGCAAGAACTCAACCATCTTCA 58.181 40.909 0.00 0.00 31.26 3.02
2720 2785 7.040409 ACAGTGGGATAGATCAAAAGTGAAAAC 60.040 37.037 0.00 0.00 37.30 2.43
2772 2839 8.330302 CAAAAACCTGAAAATCAACATGAGTTC 58.670 33.333 0.00 0.00 33.14 3.01
2778 2845 5.752955 CGGACAAAAACCTGAAAATCAACAT 59.247 36.000 0.00 0.00 0.00 2.71
3766 3837 7.327032 GTCTCAAAAGCATTTCACAGGAATTAC 59.673 37.037 0.00 0.00 37.28 1.89
3806 3877 9.032420 GTCAAAGTGTATAAATACAGACCTAGC 57.968 37.037 3.06 0.00 43.32 3.42
3855 3926 7.193595 GGATACAAGGATAACAAATTGAACGG 58.806 38.462 0.00 0.00 0.00 4.44
3877 3948 4.608170 AACAAATACCATCACCCTGGAT 57.392 40.909 0.00 0.00 39.73 3.41
4029 4478 1.467342 CATGCCATGTGTCACTGACAG 59.533 52.381 12.33 0.00 43.57 3.51
4200 4649 4.774124 TGGGCAACATTGAAACATCAAAA 58.226 34.783 0.00 0.00 39.74 2.44
4448 4897 3.701205 TGGTAGTTGCATCAGTGATGT 57.299 42.857 29.15 15.22 41.60 3.06
4452 4901 4.919168 CACAAAATGGTAGTTGCATCAGTG 59.081 41.667 0.00 0.00 0.00 3.66
4468 4917 3.865477 CCATGCATGGCCACAAAAT 57.135 47.368 31.95 0.00 41.75 1.82
4523 4973 0.674895 ACTTTGAGGCTCGGATGTGC 60.675 55.000 10.42 0.00 0.00 4.57
4549 4999 0.243095 GAAGGTCGTCGCCAGTTAGT 59.757 55.000 8.15 0.00 0.00 2.24
4592 5042 6.680872 GCACTACAGATGGAAAGAGTACCTAC 60.681 46.154 0.00 0.00 0.00 3.18
4647 5098 5.812127 CAGATCATCATTTACAGGAACACGA 59.188 40.000 0.00 0.00 0.00 4.35
4708 5159 5.582269 CAGCATATGGTTCCATACTTATCCG 59.418 44.000 12.94 0.02 32.57 4.18
4748 5199 1.159713 GGCAAGCAAACAACAAGGCC 61.160 55.000 0.00 0.00 0.00 5.19
4782 5242 0.948623 TGTCGTCCAAAGCATGACCG 60.949 55.000 0.00 0.00 0.00 4.79
4817 5277 6.431234 ACCTCACAACATATGTTTCTCTTTCC 59.569 38.462 18.50 0.00 41.46 3.13
4836 5296 3.134804 ACACCATCCAAGCTATACCTCAC 59.865 47.826 0.00 0.00 0.00 3.51
4851 5311 3.767711 AGGAAGAAAAGGGAACACCATC 58.232 45.455 0.00 0.00 43.89 3.51
4870 5330 1.131126 CGGCAGTAGCATCAAACAAGG 59.869 52.381 0.00 0.00 44.61 3.61
4874 5334 0.370273 CGACGGCAGTAGCATCAAAC 59.630 55.000 0.00 0.00 44.61 2.93
4920 5380 1.549203 GCATTCAGGAGGGAAAGCAA 58.451 50.000 0.00 0.00 40.26 3.91
4960 5420 2.053747 TGGGGCTCCTTTTCCTCTAA 57.946 50.000 3.07 0.00 0.00 2.10
4961 5421 2.053747 TTGGGGCTCCTTTTCCTCTA 57.946 50.000 3.07 0.00 0.00 2.43
4991 5451 8.870116 TCTCTCCCTCGAATTTCATAATGAATA 58.130 33.333 0.00 0.00 36.11 1.75
4992 5452 7.739825 TCTCTCCCTCGAATTTCATAATGAAT 58.260 34.615 0.00 0.00 36.11 2.57
5011 5471 0.980423 AACAGCTGGGTTCTCTCTCC 59.020 55.000 19.93 0.00 0.00 3.71
5012 5472 2.037772 TGAAACAGCTGGGTTCTCTCTC 59.962 50.000 24.47 6.42 0.00 3.20
5013 5473 2.038295 CTGAAACAGCTGGGTTCTCTCT 59.962 50.000 24.47 0.00 0.00 3.10
5101 5562 2.354203 GGGGTCTACTGAAGCAGAAGTG 60.354 54.545 0.82 0.00 35.18 3.16
5102 5563 1.903183 GGGGTCTACTGAAGCAGAAGT 59.097 52.381 0.82 0.00 35.18 3.01
5103 5564 1.208293 GGGGGTCTACTGAAGCAGAAG 59.792 57.143 0.82 0.00 35.18 2.85
5104 5565 1.203313 AGGGGGTCTACTGAAGCAGAA 60.203 52.381 0.82 0.00 35.18 3.02
5105 5566 0.413832 AGGGGGTCTACTGAAGCAGA 59.586 55.000 0.82 0.00 35.18 4.26
5106 5567 1.280457 AAGGGGGTCTACTGAAGCAG 58.720 55.000 0.00 0.00 37.52 4.24
5107 5568 2.634639 TAAGGGGGTCTACTGAAGCA 57.365 50.000 0.00 0.00 0.00 3.91
5108 5569 3.454812 TGATTAAGGGGGTCTACTGAAGC 59.545 47.826 0.00 0.00 0.00 3.86
5109 5570 4.469945 TGTGATTAAGGGGGTCTACTGAAG 59.530 45.833 0.00 0.00 0.00 3.02
5110 5571 4.431378 TGTGATTAAGGGGGTCTACTGAA 58.569 43.478 0.00 0.00 0.00 3.02
5111 5572 4.069312 TGTGATTAAGGGGGTCTACTGA 57.931 45.455 0.00 0.00 0.00 3.41
5112 5573 4.501571 CGATGTGATTAAGGGGGTCTACTG 60.502 50.000 0.00 0.00 0.00 2.74
5113 5574 3.641906 CGATGTGATTAAGGGGGTCTACT 59.358 47.826 0.00 0.00 0.00 2.57
5114 5575 3.640029 TCGATGTGATTAAGGGGGTCTAC 59.360 47.826 0.00 0.00 0.00 2.59
5115 5576 3.918566 TCGATGTGATTAAGGGGGTCTA 58.081 45.455 0.00 0.00 0.00 2.59
5116 5577 2.759355 TCGATGTGATTAAGGGGGTCT 58.241 47.619 0.00 0.00 0.00 3.85
5117 5578 3.403038 CATCGATGTGATTAAGGGGGTC 58.597 50.000 17.50 0.00 34.13 4.46
5118 5579 2.106511 CCATCGATGTGATTAAGGGGGT 59.893 50.000 23.27 0.00 34.13 4.95
5119 5580 2.783135 CCATCGATGTGATTAAGGGGG 58.217 52.381 23.27 0.11 34.13 5.40
5120 5581 2.154462 GCCATCGATGTGATTAAGGGG 58.846 52.381 23.27 5.74 34.13 4.79
5121 5582 2.810274 CAGCCATCGATGTGATTAAGGG 59.190 50.000 23.27 6.47 34.13 3.95
5122 5583 3.732212 TCAGCCATCGATGTGATTAAGG 58.268 45.455 23.27 7.19 34.13 2.69
5123 5584 4.625028 TCTCAGCCATCGATGTGATTAAG 58.375 43.478 23.27 12.54 34.13 1.85
5124 5585 4.670896 TCTCAGCCATCGATGTGATTAA 57.329 40.909 23.27 7.88 34.13 1.40
5125 5586 4.879197 ATCTCAGCCATCGATGTGATTA 57.121 40.909 23.27 12.46 34.13 1.75
5126 5587 3.766068 ATCTCAGCCATCGATGTGATT 57.234 42.857 23.27 9.48 34.13 2.57
5127 5588 3.766068 AATCTCAGCCATCGATGTGAT 57.234 42.857 23.27 11.26 38.01 3.06
5128 5589 3.243873 GGTAATCTCAGCCATCGATGTGA 60.244 47.826 23.27 19.00 0.00 3.58
5129 5590 3.062763 GGTAATCTCAGCCATCGATGTG 58.937 50.000 23.27 15.93 0.00 3.21
5130 5591 2.037772 GGGTAATCTCAGCCATCGATGT 59.962 50.000 23.27 3.55 36.06 3.06
5131 5592 2.301296 AGGGTAATCTCAGCCATCGATG 59.699 50.000 18.76 18.76 38.60 3.84
5132 5593 2.614259 AGGGTAATCTCAGCCATCGAT 58.386 47.619 0.00 0.00 38.60 3.59
5133 5594 2.088104 AGGGTAATCTCAGCCATCGA 57.912 50.000 0.00 0.00 38.60 3.59
5134 5595 4.142138 GGTATAGGGTAATCTCAGCCATCG 60.142 50.000 0.00 0.00 38.60 3.84
5135 5596 4.162509 GGGTATAGGGTAATCTCAGCCATC 59.837 50.000 0.00 0.00 38.60 3.51
5136 5597 4.104831 GGGTATAGGGTAATCTCAGCCAT 58.895 47.826 0.00 0.00 38.60 4.40
5137 5598 3.517612 GGGTATAGGGTAATCTCAGCCA 58.482 50.000 0.00 0.00 38.60 4.75
5138 5599 2.838813 GGGGTATAGGGTAATCTCAGCC 59.161 54.545 0.00 0.00 36.27 4.85
5139 5600 3.792515 AGGGGTATAGGGTAATCTCAGC 58.207 50.000 0.00 0.00 0.00 4.26
5140 5601 5.403512 TGAAGGGGTATAGGGTAATCTCAG 58.596 45.833 0.00 0.00 0.00 3.35
5141 5602 5.427857 TGAAGGGGTATAGGGTAATCTCA 57.572 43.478 0.00 0.00 0.00 3.27
5142 5603 8.625467 ATTATGAAGGGGTATAGGGTAATCTC 57.375 38.462 0.00 0.00 0.00 2.75
5146 5607 9.119512 CCTTTATTATGAAGGGGTATAGGGTAA 57.880 37.037 7.77 0.00 39.99 2.85
5147 5608 8.475102 TCCTTTATTATGAAGGGGTATAGGGTA 58.525 37.037 14.54 0.00 43.13 3.69
5148 5609 7.239143 GTCCTTTATTATGAAGGGGTATAGGGT 59.761 40.741 14.54 0.00 43.13 4.34
5149 5610 7.238933 TGTCCTTTATTATGAAGGGGTATAGGG 59.761 40.741 14.54 0.00 43.13 3.53
5150 5611 8.214721 TGTCCTTTATTATGAAGGGGTATAGG 57.785 38.462 14.54 0.00 43.13 2.57
5151 5612 8.322091 CCTGTCCTTTATTATGAAGGGGTATAG 58.678 40.741 14.54 4.84 43.13 1.31
5152 5613 8.020253 TCCTGTCCTTTATTATGAAGGGGTATA 58.980 37.037 14.54 0.00 43.13 1.47
5153 5614 6.855061 TCCTGTCCTTTATTATGAAGGGGTAT 59.145 38.462 14.54 0.00 43.13 2.73
5154 5615 6.214278 TCCTGTCCTTTATTATGAAGGGGTA 58.786 40.000 14.54 2.73 43.13 3.69
5155 5616 5.043762 TCCTGTCCTTTATTATGAAGGGGT 58.956 41.667 14.54 0.00 43.13 4.95
5156 5617 5.646692 TCCTGTCCTTTATTATGAAGGGG 57.353 43.478 14.54 8.96 43.13 4.79
5157 5618 6.006449 CCATCCTGTCCTTTATTATGAAGGG 58.994 44.000 14.54 0.70 43.13 3.95
5158 5619 6.605119 ACCATCCTGTCCTTTATTATGAAGG 58.395 40.000 9.22 9.22 44.06 3.46
5159 5620 7.512992 AGACCATCCTGTCCTTTATTATGAAG 58.487 38.462 0.00 0.00 35.83 3.02
5160 5621 7.451731 AGACCATCCTGTCCTTTATTATGAA 57.548 36.000 0.00 0.00 35.83 2.57
5161 5622 7.451731 AAGACCATCCTGTCCTTTATTATGA 57.548 36.000 0.00 0.00 35.83 2.15
5162 5623 8.525290 AAAAGACCATCCTGTCCTTTATTATG 57.475 34.615 0.00 0.00 35.83 1.90
5163 5624 9.190317 GAAAAAGACCATCCTGTCCTTTATTAT 57.810 33.333 0.00 0.00 35.83 1.28
5164 5625 8.390921 AGAAAAAGACCATCCTGTCCTTTATTA 58.609 33.333 0.00 0.00 35.83 0.98
5165 5626 7.241628 AGAAAAAGACCATCCTGTCCTTTATT 58.758 34.615 0.00 0.00 35.83 1.40
5166 5627 6.794534 AGAAAAAGACCATCCTGTCCTTTAT 58.205 36.000 0.00 0.00 35.83 1.40
5167 5628 6.183361 TGAGAAAAAGACCATCCTGTCCTTTA 60.183 38.462 0.00 0.00 35.83 1.85
5168 5629 5.066913 AGAAAAAGACCATCCTGTCCTTT 57.933 39.130 0.00 0.00 35.83 3.11
5169 5630 4.104738 TGAGAAAAAGACCATCCTGTCCTT 59.895 41.667 0.00 0.00 35.83 3.36
5170 5631 3.652869 TGAGAAAAAGACCATCCTGTCCT 59.347 43.478 0.00 0.00 35.83 3.85
5171 5632 4.006319 CTGAGAAAAAGACCATCCTGTCC 58.994 47.826 0.00 0.00 35.83 4.02
5172 5633 4.899502 TCTGAGAAAAAGACCATCCTGTC 58.100 43.478 0.00 0.00 35.43 3.51
5173 5634 4.349342 ACTCTGAGAAAAAGACCATCCTGT 59.651 41.667 12.44 0.00 0.00 4.00
5174 5635 4.904241 ACTCTGAGAAAAAGACCATCCTG 58.096 43.478 12.44 0.00 0.00 3.86
5175 5636 5.782845 AGTACTCTGAGAAAAAGACCATCCT 59.217 40.000 12.44 0.00 0.00 3.24
5176 5637 6.043854 AGTACTCTGAGAAAAAGACCATCC 57.956 41.667 12.44 0.00 0.00 3.51
5177 5638 8.308207 ACTAAGTACTCTGAGAAAAAGACCATC 58.692 37.037 12.44 0.00 0.00 3.51
5178 5639 8.196378 ACTAAGTACTCTGAGAAAAAGACCAT 57.804 34.615 12.44 0.00 0.00 3.55
5179 5640 7.255871 GGACTAAGTACTCTGAGAAAAAGACCA 60.256 40.741 12.44 0.00 0.00 4.02
5180 5641 7.092079 GGACTAAGTACTCTGAGAAAAAGACC 58.908 42.308 12.44 7.82 0.00 3.85
5181 5642 6.802834 CGGACTAAGTACTCTGAGAAAAAGAC 59.197 42.308 12.44 2.94 0.00 3.01
5182 5643 6.489361 ACGGACTAAGTACTCTGAGAAAAAGA 59.511 38.462 12.44 0.00 0.00 2.52
5183 5644 6.583050 CACGGACTAAGTACTCTGAGAAAAAG 59.417 42.308 12.44 4.73 0.00 2.27
5184 5645 6.444633 CACGGACTAAGTACTCTGAGAAAAA 58.555 40.000 12.44 0.00 0.00 1.94
5185 5646 5.564259 GCACGGACTAAGTACTCTGAGAAAA 60.564 44.000 12.44 0.00 0.00 2.29
5186 5647 4.082895 GCACGGACTAAGTACTCTGAGAAA 60.083 45.833 12.44 0.00 0.00 2.52
5187 5648 3.439476 GCACGGACTAAGTACTCTGAGAA 59.561 47.826 12.44 0.00 0.00 2.87
5188 5649 3.008330 GCACGGACTAAGTACTCTGAGA 58.992 50.000 12.44 0.00 0.00 3.27
5189 5650 3.011119 AGCACGGACTAAGTACTCTGAG 58.989 50.000 2.45 2.45 0.00 3.35
5190 5651 2.747989 CAGCACGGACTAAGTACTCTGA 59.252 50.000 0.00 0.00 0.00 3.27
5191 5652 2.159366 CCAGCACGGACTAAGTACTCTG 60.159 54.545 0.00 0.00 36.56 3.35
5192 5653 2.093106 CCAGCACGGACTAAGTACTCT 58.907 52.381 0.00 0.00 36.56 3.24
5193 5654 1.817447 ACCAGCACGGACTAAGTACTC 59.183 52.381 0.00 0.00 38.63 2.59
5194 5655 1.920610 ACCAGCACGGACTAAGTACT 58.079 50.000 0.00 0.00 38.63 2.73
5195 5656 3.855689 TTACCAGCACGGACTAAGTAC 57.144 47.619 0.00 0.00 38.63 2.73
5196 5657 4.142093 GGAATTACCAGCACGGACTAAGTA 60.142 45.833 0.00 0.00 38.63 2.24
5197 5658 3.369157 GGAATTACCAGCACGGACTAAGT 60.369 47.826 0.00 0.00 38.63 2.24
5198 5659 3.195661 GGAATTACCAGCACGGACTAAG 58.804 50.000 0.00 0.00 38.63 2.18
5199 5660 2.417651 CGGAATTACCAGCACGGACTAA 60.418 50.000 0.00 0.00 38.63 2.24
5200 5661 1.135527 CGGAATTACCAGCACGGACTA 59.864 52.381 0.00 0.00 38.63 2.59
5201 5662 0.108329 CGGAATTACCAGCACGGACT 60.108 55.000 0.00 0.00 38.63 3.85
5202 5663 1.087771 CCGGAATTACCAGCACGGAC 61.088 60.000 0.00 0.00 43.69 4.79
5203 5664 1.219664 CCGGAATTACCAGCACGGA 59.780 57.895 0.00 0.00 43.69 4.69
5204 5665 0.176219 TACCGGAATTACCAGCACGG 59.824 55.000 9.46 0.00 46.16 4.94
5205 5666 1.931172 CTTACCGGAATTACCAGCACG 59.069 52.381 9.46 0.00 38.90 5.34
5206 5667 2.981898 ACTTACCGGAATTACCAGCAC 58.018 47.619 9.46 0.00 38.90 4.40
5207 5668 3.706600 AACTTACCGGAATTACCAGCA 57.293 42.857 9.46 0.00 38.90 4.41
5208 5669 5.381174 AAAAACTTACCGGAATTACCAGC 57.619 39.130 9.46 0.00 38.90 4.85
5209 5670 8.953313 AGAATAAAAACTTACCGGAATTACCAG 58.047 33.333 9.46 0.00 38.90 4.00
5210 5671 8.866970 AGAATAAAAACTTACCGGAATTACCA 57.133 30.769 9.46 0.00 38.90 3.25
5211 5672 9.778993 GAAGAATAAAAACTTACCGGAATTACC 57.221 33.333 9.46 0.00 0.00 2.85
5214 5675 9.292195 TCTGAAGAATAAAAACTTACCGGAATT 57.708 29.630 9.46 0.00 0.00 2.17
5215 5676 8.857694 TCTGAAGAATAAAAACTTACCGGAAT 57.142 30.769 9.46 0.00 0.00 3.01
5216 5677 8.152246 TCTCTGAAGAATAAAAACTTACCGGAA 58.848 33.333 9.46 0.00 0.00 4.30
5217 5678 7.673180 TCTCTGAAGAATAAAAACTTACCGGA 58.327 34.615 9.46 0.00 0.00 5.14
5218 5679 7.900782 TCTCTGAAGAATAAAAACTTACCGG 57.099 36.000 0.00 0.00 0.00 5.28
5219 5680 9.204570 TCTTCTCTGAAGAATAAAAACTTACCG 57.795 33.333 7.46 0.00 40.68 4.02
5226 5687 9.495572 GGAGTTCTCTTCTCTGAAGAATAAAAA 57.504 33.333 10.63 0.38 40.68 1.94
5227 5688 7.815068 CGGAGTTCTCTTCTCTGAAGAATAAAA 59.185 37.037 10.63 2.30 40.68 1.52
5228 5689 7.316640 CGGAGTTCTCTTCTCTGAAGAATAAA 58.683 38.462 10.63 4.25 40.68 1.40
5229 5690 6.127591 CCGGAGTTCTCTTCTCTGAAGAATAA 60.128 42.308 0.00 6.21 40.68 1.40
5230 5691 5.358442 CCGGAGTTCTCTTCTCTGAAGAATA 59.642 44.000 0.00 1.05 40.68 1.75
5231 5692 4.159506 CCGGAGTTCTCTTCTCTGAAGAAT 59.840 45.833 0.00 0.00 40.68 2.40
5232 5693 3.508012 CCGGAGTTCTCTTCTCTGAAGAA 59.492 47.826 0.00 0.00 39.78 2.52
5233 5694 3.085533 CCGGAGTTCTCTTCTCTGAAGA 58.914 50.000 0.00 9.30 39.78 2.87
5234 5695 2.823154 ACCGGAGTTCTCTTCTCTGAAG 59.177 50.000 9.46 1.23 39.78 3.02
5235 5696 2.877866 ACCGGAGTTCTCTTCTCTGAA 58.122 47.619 9.46 0.00 39.78 3.02
5236 5697 2.588464 ACCGGAGTTCTCTTCTCTGA 57.412 50.000 9.46 0.00 39.78 3.27
5237 5698 3.759618 ACTTACCGGAGTTCTCTTCTCTG 59.240 47.826 9.46 0.00 37.86 3.35
5238 5699 3.759618 CACTTACCGGAGTTCTCTTCTCT 59.240 47.826 9.46 0.00 33.06 3.10
5239 5700 3.119424 CCACTTACCGGAGTTCTCTTCTC 60.119 52.174 9.46 0.00 0.00 2.87
5240 5701 2.826725 CCACTTACCGGAGTTCTCTTCT 59.173 50.000 9.46 0.00 0.00 2.85
5241 5702 2.561858 ACCACTTACCGGAGTTCTCTTC 59.438 50.000 9.46 0.00 0.00 2.87
5242 5703 2.561858 GACCACTTACCGGAGTTCTCTT 59.438 50.000 9.46 0.00 0.00 2.85
5243 5704 2.169330 GACCACTTACCGGAGTTCTCT 58.831 52.381 9.46 0.00 0.00 3.10
5244 5705 2.169330 AGACCACTTACCGGAGTTCTC 58.831 52.381 9.46 0.00 0.00 2.87
5245 5706 2.305858 AGACCACTTACCGGAGTTCT 57.694 50.000 9.46 0.00 0.00 3.01
5246 5707 2.159462 CGTAGACCACTTACCGGAGTTC 60.159 54.545 9.46 0.00 0.00 3.01
5247 5708 1.815003 CGTAGACCACTTACCGGAGTT 59.185 52.381 9.46 0.00 0.00 3.01
5248 5709 1.271597 ACGTAGACCACTTACCGGAGT 60.272 52.381 9.46 0.00 0.00 3.85
5249 5710 1.457346 ACGTAGACCACTTACCGGAG 58.543 55.000 9.46 0.00 0.00 4.63
5250 5711 2.356135 GTACGTAGACCACTTACCGGA 58.644 52.381 9.46 0.00 0.00 5.14
5251 5712 1.062587 CGTACGTAGACCACTTACCGG 59.937 57.143 7.22 0.00 30.06 5.28
5252 5713 1.999735 TCGTACGTAGACCACTTACCG 59.000 52.381 16.05 0.00 30.06 4.02
5253 5714 3.790123 GCATCGTACGTAGACCACTTACC 60.790 52.174 16.05 0.00 30.06 2.85
5254 5715 3.064545 AGCATCGTACGTAGACCACTTAC 59.935 47.826 16.05 0.00 0.00 2.34
5255 5716 3.273434 AGCATCGTACGTAGACCACTTA 58.727 45.455 16.05 0.00 0.00 2.24
5256 5717 2.089980 AGCATCGTACGTAGACCACTT 58.910 47.619 16.05 0.00 0.00 3.16
5257 5718 1.747709 AGCATCGTACGTAGACCACT 58.252 50.000 16.05 1.86 0.00 4.00
5258 5719 2.286654 GGTAGCATCGTACGTAGACCAC 60.287 54.545 16.05 7.51 0.00 4.16
5259 5720 1.942657 GGTAGCATCGTACGTAGACCA 59.057 52.381 16.05 0.00 0.00 4.02
5260 5721 2.032204 CAGGTAGCATCGTACGTAGACC 60.032 54.545 16.05 15.41 0.00 3.85
5261 5722 2.032204 CCAGGTAGCATCGTACGTAGAC 60.032 54.545 16.05 7.47 0.00 2.59
5262 5723 2.216046 CCAGGTAGCATCGTACGTAGA 58.784 52.381 16.05 0.00 0.00 2.59
5263 5724 1.266175 CCCAGGTAGCATCGTACGTAG 59.734 57.143 16.05 10.08 0.00 3.51
5264 5725 1.311859 CCCAGGTAGCATCGTACGTA 58.688 55.000 16.05 2.34 0.00 3.57
5265 5726 2.012902 GCCCAGGTAGCATCGTACGT 62.013 60.000 16.05 0.00 0.00 3.57
5266 5727 1.299926 GCCCAGGTAGCATCGTACG 60.300 63.158 9.53 9.53 0.00 3.67
5267 5728 0.177141 TTGCCCAGGTAGCATCGTAC 59.823 55.000 0.00 0.00 40.59 3.67
5268 5729 0.464036 CTTGCCCAGGTAGCATCGTA 59.536 55.000 0.00 0.00 40.59 3.43
5269 5730 1.221840 CTTGCCCAGGTAGCATCGT 59.778 57.895 0.00 0.00 40.59 3.73
5270 5731 0.107703 TTCTTGCCCAGGTAGCATCG 60.108 55.000 0.00 0.00 40.59 3.84
5271 5732 1.065126 ACTTCTTGCCCAGGTAGCATC 60.065 52.381 0.00 0.00 40.59 3.91
5272 5733 0.995024 ACTTCTTGCCCAGGTAGCAT 59.005 50.000 0.00 0.00 40.59 3.79
5273 5734 0.324943 GACTTCTTGCCCAGGTAGCA 59.675 55.000 0.00 0.00 38.81 3.49
5274 5735 0.324943 TGACTTCTTGCCCAGGTAGC 59.675 55.000 0.00 0.00 0.00 3.58
5275 5736 2.427506 GTTGACTTCTTGCCCAGGTAG 58.572 52.381 0.00 0.00 0.00 3.18
5276 5737 1.270625 CGTTGACTTCTTGCCCAGGTA 60.271 52.381 0.00 0.00 0.00 3.08
5277 5738 0.535102 CGTTGACTTCTTGCCCAGGT 60.535 55.000 0.00 0.00 0.00 4.00
5278 5739 0.535102 ACGTTGACTTCTTGCCCAGG 60.535 55.000 0.00 0.00 0.00 4.45
5279 5740 1.308998 AACGTTGACTTCTTGCCCAG 58.691 50.000 0.00 0.00 0.00 4.45
5280 5741 1.757682 AAACGTTGACTTCTTGCCCA 58.242 45.000 0.00 0.00 0.00 5.36
5281 5742 2.459934 CAAAACGTTGACTTCTTGCCC 58.540 47.619 0.00 0.00 36.83 5.36
5282 5743 1.852280 GCAAAACGTTGACTTCTTGCC 59.148 47.619 18.02 4.93 36.83 4.52
5283 5744 2.278875 GTGCAAAACGTTGACTTCTTGC 59.721 45.455 20.68 20.68 39.62 4.01
5284 5745 2.851824 GGTGCAAAACGTTGACTTCTTG 59.148 45.455 0.00 2.36 36.83 3.02
5285 5746 2.752903 AGGTGCAAAACGTTGACTTCTT 59.247 40.909 0.00 0.00 36.83 2.52
5286 5747 2.097466 CAGGTGCAAAACGTTGACTTCT 59.903 45.455 0.00 0.00 36.83 2.85
5287 5748 2.450160 CAGGTGCAAAACGTTGACTTC 58.550 47.619 0.00 0.00 36.83 3.01
5288 5749 1.134175 CCAGGTGCAAAACGTTGACTT 59.866 47.619 0.00 0.00 36.83 3.01
5289 5750 0.738389 CCAGGTGCAAAACGTTGACT 59.262 50.000 0.00 0.00 36.83 3.41
5290 5751 0.248866 CCCAGGTGCAAAACGTTGAC 60.249 55.000 0.00 0.00 36.83 3.18
5291 5752 2.010582 GCCCAGGTGCAAAACGTTGA 62.011 55.000 0.00 0.00 36.83 3.18
5292 5753 1.591327 GCCCAGGTGCAAAACGTTG 60.591 57.895 0.00 0.00 37.83 4.10
5293 5754 2.811799 GCCCAGGTGCAAAACGTT 59.188 55.556 0.00 0.00 0.00 3.99
5294 5755 3.591835 CGCCCAGGTGCAAAACGT 61.592 61.111 0.00 0.00 0.00 3.99
5295 5756 4.341502 CCGCCCAGGTGCAAAACG 62.342 66.667 0.00 0.00 34.51 3.60
5296 5757 4.662961 GCCGCCCAGGTGCAAAAC 62.663 66.667 0.00 0.00 43.70 2.43
5297 5758 4.912395 AGCCGCCCAGGTGCAAAA 62.912 61.111 0.00 0.00 43.70 2.44
5328 5789 4.418401 CGGCGCACCCACAAATGG 62.418 66.667 10.83 0.00 46.81 3.16
5336 5797 3.747976 ATTGAAAGCGGCGCACCC 61.748 61.111 35.02 21.11 0.00 4.61
5337 5798 2.504681 CATTGAAAGCGGCGCACC 60.505 61.111 35.02 21.47 0.00 5.01
5338 5799 2.504681 CCATTGAAAGCGGCGCAC 60.505 61.111 35.02 23.46 0.00 5.34
5339 5800 3.746889 CCCATTGAAAGCGGCGCA 61.747 61.111 35.02 13.72 0.00 6.09
5340 5801 3.401243 CTCCCATTGAAAGCGGCGC 62.401 63.158 26.86 26.86 0.00 6.53
5341 5802 1.305219 TTCTCCCATTGAAAGCGGCG 61.305 55.000 0.51 0.51 0.00 6.46
5342 5803 0.887933 TTTCTCCCATTGAAAGCGGC 59.112 50.000 0.00 0.00 0.00 6.53
5343 5804 3.658757 TTTTTCTCCCATTGAAAGCGG 57.341 42.857 0.00 0.00 35.27 5.52
5344 5805 4.143052 GCAATTTTTCTCCCATTGAAAGCG 60.143 41.667 0.00 0.00 35.27 4.68
5345 5806 4.143052 CGCAATTTTTCTCCCATTGAAAGC 60.143 41.667 0.00 0.00 35.27 3.51
5346 5807 5.229423 TCGCAATTTTTCTCCCATTGAAAG 58.771 37.500 0.00 0.00 35.27 2.62
5347 5808 5.010516 TCTCGCAATTTTTCTCCCATTGAAA 59.989 36.000 0.00 0.00 30.66 2.69
5348 5809 4.522405 TCTCGCAATTTTTCTCCCATTGAA 59.478 37.500 0.00 0.00 30.66 2.69
5349 5810 4.078537 TCTCGCAATTTTTCTCCCATTGA 58.921 39.130 0.00 0.00 30.66 2.57
5350 5811 4.439305 TCTCGCAATTTTTCTCCCATTG 57.561 40.909 0.00 0.00 0.00 2.82
5351 5812 5.467035 TTTCTCGCAATTTTTCTCCCATT 57.533 34.783 0.00 0.00 0.00 3.16
5352 5813 5.467035 TTTTCTCGCAATTTTTCTCCCAT 57.533 34.783 0.00 0.00 0.00 4.00
5353 5814 4.927978 TTTTCTCGCAATTTTTCTCCCA 57.072 36.364 0.00 0.00 0.00 4.37
5373 5834 4.686891 TGATTCCCATCACCCTCATTTTT 58.313 39.130 0.00 0.00 34.22 1.94
5374 5835 4.335735 TGATTCCCATCACCCTCATTTT 57.664 40.909 0.00 0.00 34.22 1.82
5375 5836 4.335735 TTGATTCCCATCACCCTCATTT 57.664 40.909 0.00 0.00 39.28 2.32
5376 5837 4.026052 GTTTGATTCCCATCACCCTCATT 58.974 43.478 0.00 0.00 39.28 2.57
5377 5838 3.628257 GGTTTGATTCCCATCACCCTCAT 60.628 47.826 0.00 0.00 39.28 2.90
5378 5839 2.291540 GGTTTGATTCCCATCACCCTCA 60.292 50.000 0.00 0.00 39.28 3.86
5379 5840 2.379005 GGTTTGATTCCCATCACCCTC 58.621 52.381 0.00 0.00 39.28 4.30
5380 5841 1.007118 GGGTTTGATTCCCATCACCCT 59.993 52.381 0.00 0.00 41.90 4.34
5381 5842 1.485124 GGGTTTGATTCCCATCACCC 58.515 55.000 0.00 0.00 44.05 4.61
5382 5843 1.102978 CGGGTTTGATTCCCATCACC 58.897 55.000 1.91 0.00 44.81 4.02
5383 5844 0.455815 GCGGGTTTGATTCCCATCAC 59.544 55.000 1.91 0.00 44.81 3.06
5384 5845 0.038890 TGCGGGTTTGATTCCCATCA 59.961 50.000 1.91 0.00 44.81 3.07
5385 5846 0.455815 GTGCGGGTTTGATTCCCATC 59.544 55.000 1.91 0.00 44.81 3.51
5386 5847 1.312371 CGTGCGGGTTTGATTCCCAT 61.312 55.000 1.91 0.00 44.81 4.00
5387 5848 1.969064 CGTGCGGGTTTGATTCCCA 60.969 57.895 1.91 0.00 44.81 4.37
5388 5849 1.520600 AACGTGCGGGTTTGATTCCC 61.521 55.000 0.00 0.00 41.41 3.97
5389 5850 0.109919 GAACGTGCGGGTTTGATTCC 60.110 55.000 0.00 0.00 0.00 3.01
5390 5851 0.109919 GGAACGTGCGGGTTTGATTC 60.110 55.000 0.00 0.00 0.00 2.52
5391 5852 0.820074 TGGAACGTGCGGGTTTGATT 60.820 50.000 0.00 0.00 0.00 2.57
5392 5853 1.228003 TGGAACGTGCGGGTTTGAT 60.228 52.632 0.00 0.00 0.00 2.57
5393 5854 1.890041 CTGGAACGTGCGGGTTTGA 60.890 57.895 0.00 0.00 0.00 2.69
5394 5855 1.720694 AACTGGAACGTGCGGGTTTG 61.721 55.000 0.00 0.00 0.00 2.93
5395 5856 1.033202 AAACTGGAACGTGCGGGTTT 61.033 50.000 8.95 8.95 0.00 3.27
5396 5857 0.179051 TAAACTGGAACGTGCGGGTT 60.179 50.000 0.00 0.00 0.00 4.11
5397 5858 0.035739 ATAAACTGGAACGTGCGGGT 59.964 50.000 0.00 0.00 0.00 5.28
5398 5859 0.446222 CATAAACTGGAACGTGCGGG 59.554 55.000 0.00 0.00 0.00 6.13
5399 5860 1.136085 CACATAAACTGGAACGTGCGG 60.136 52.381 0.00 0.00 0.00 5.69
5400 5861 1.724654 GCACATAAACTGGAACGTGCG 60.725 52.381 0.00 0.00 40.16 5.34
5401 5862 1.963747 GCACATAAACTGGAACGTGC 58.036 50.000 0.00 0.00 42.41 5.34
5402 5863 2.661709 CGTGCACATAAACTGGAACGTG 60.662 50.000 18.64 0.00 0.00 4.49
5403 5864 1.529438 CGTGCACATAAACTGGAACGT 59.471 47.619 18.64 0.00 0.00 3.99
5404 5865 1.724654 GCGTGCACATAAACTGGAACG 60.725 52.381 18.64 0.00 34.27 3.95
5405 5866 1.535462 AGCGTGCACATAAACTGGAAC 59.465 47.619 18.64 0.00 0.00 3.62
5406 5867 1.535028 CAGCGTGCACATAAACTGGAA 59.465 47.619 18.64 0.00 0.00 3.53
5407 5868 1.155889 CAGCGTGCACATAAACTGGA 58.844 50.000 18.64 0.00 0.00 3.86
5408 5869 0.874390 ACAGCGTGCACATAAACTGG 59.126 50.000 18.64 0.00 0.00 4.00
5409 5870 1.954437 CACAGCGTGCACATAAACTG 58.046 50.000 18.64 16.53 0.00 3.16
5420 5881 1.568612 CCAGTGGTTAGCACAGCGTG 61.569 60.000 17.00 5.99 36.51 5.34
5421 5882 1.301716 CCAGTGGTTAGCACAGCGT 60.302 57.895 17.00 0.00 0.00 5.07
5422 5883 2.034879 CCCAGTGGTTAGCACAGCG 61.035 63.158 17.00 4.69 0.00 5.18
5423 5884 1.374947 TCCCAGTGGTTAGCACAGC 59.625 57.895 17.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.