Multiple sequence alignment - TraesCS3D01G377100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G377100 chr3D 100.000 8522 0 0 1001 9522 491965421 491956900 0.000000e+00 15701.0
1 TraesCS3D01G377100 chr3D 100.000 792 0 0 1 792 491966421 491965630 0.000000e+00 1463.0
2 TraesCS3D01G377100 chr3D 94.366 284 16 0 6181 6464 255424680 255424397 4.080000e-118 436.0
3 TraesCS3D01G377100 chr3D 99.387 163 1 0 2272 2434 491963964 491963802 7.230000e-76 296.0
4 TraesCS3D01G377100 chr3D 99.387 163 1 0 2458 2620 491964150 491963988 7.230000e-76 296.0
5 TraesCS3D01G377100 chr3D 87.719 114 13 1 9303 9415 254690578 254690691 2.160000e-26 132.0
6 TraesCS3D01G377100 chr3B 96.920 2857 65 14 3340 6183 652913695 652910849 0.000000e+00 4767.0
7 TraesCS3D01G377100 chr3B 95.407 2308 47 20 6465 8746 652910859 652908585 0.000000e+00 3620.0
8 TraesCS3D01G377100 chr3B 96.692 1451 28 7 1001 2434 652915892 652914445 0.000000e+00 2396.0
9 TraesCS3D01G377100 chr3B 98.662 897 10 2 2458 3353 652914607 652913712 0.000000e+00 1589.0
10 TraesCS3D01G377100 chr3B 94.366 284 15 1 6181 6464 377115407 377115125 1.470000e-117 435.0
11 TraesCS3D01G377100 chr3B 92.222 270 18 3 170 436 652916802 652916533 6.980000e-101 379.0
12 TraesCS3D01G377100 chr3B 93.450 229 15 0 1 229 652917028 652916800 3.290000e-89 340.0
13 TraesCS3D01G377100 chr3B 91.457 199 6 3 600 792 652916222 652916029 7.330000e-66 263.0
14 TraesCS3D01G377100 chr3B 97.183 71 2 0 5720 5790 652911242 652911172 4.670000e-23 121.0
15 TraesCS3D01G377100 chr3B 88.889 72 3 4 8908 8974 419767111 419767040 6.130000e-12 84.2
16 TraesCS3D01G377100 chr3B 86.842 76 5 4 8904 8974 752687131 752687056 7.930000e-11 80.5
17 TraesCS3D01G377100 chr3A 97.547 2038 45 4 4054 6089 633855243 633853209 0.000000e+00 3482.0
18 TraesCS3D01G377100 chr3A 98.379 1604 23 3 2445 4046 633856892 633855290 0.000000e+00 2815.0
19 TraesCS3D01G377100 chr3A 96.839 1297 25 5 7543 8825 633848585 633847291 0.000000e+00 2154.0
20 TraesCS3D01G377100 chr3A 95.798 1309 36 8 1133 2434 633858013 633856717 0.000000e+00 2095.0
21 TraesCS3D01G377100 chr3A 97.412 1082 22 5 6465 7544 633849787 633848710 0.000000e+00 1838.0
22 TraesCS3D01G377100 chr3A 87.647 510 33 19 8826 9306 633847251 633846743 4.990000e-157 566.0
23 TraesCS3D01G377100 chr3A 89.646 367 22 11 438 792 633858924 633858562 4.050000e-123 453.0
24 TraesCS3D01G377100 chr3A 94.035 285 16 1 6181 6464 319962601 319962317 1.900000e-116 431.0
25 TraesCS3D01G377100 chr3A 91.852 270 15 5 170 436 633859546 633859281 4.200000e-98 370.0
26 TraesCS3D01G377100 chr3A 92.576 229 17 0 1 229 633859829 633859601 7.130000e-86 329.0
27 TraesCS3D01G377100 chr3A 92.727 220 13 2 9303 9520 633846703 633846485 2.000000e-81 315.0
28 TraesCS3D01G377100 chr3A 94.737 114 6 0 6070 6183 633849890 633849777 2.730000e-40 178.0
29 TraesCS3D01G377100 chr3A 97.183 71 2 0 5720 5790 633853508 633853438 4.670000e-23 121.0
30 TraesCS3D01G377100 chr3A 86.957 69 9 0 9238 9306 203957438 203957506 2.850000e-10 78.7
31 TraesCS3D01G377100 chr2A 92.177 294 21 2 6173 6464 561298743 561299036 1.910000e-111 414.0
32 TraesCS3D01G377100 chr2A 93.214 280 14 3 6185 6464 122146938 122147212 3.200000e-109 407.0
33 TraesCS3D01G377100 chr2A 78.873 142 19 7 9174 9304 621856160 621856019 1.700000e-12 86.1
34 TraesCS3D01G377100 chr2A 86.765 68 9 0 9239 9306 42722898 42722965 1.030000e-09 76.8
35 TraesCS3D01G377100 chr6D 93.238 281 17 2 6185 6465 3743966 3744244 6.880000e-111 412.0
36 TraesCS3D01G377100 chr6D 92.857 280 20 0 6185 6464 327022153 327021874 3.200000e-109 407.0
37 TraesCS3D01G377100 chr6D 89.286 112 12 0 9303 9414 404822008 404821897 3.590000e-29 141.0
38 TraesCS3D01G377100 chr6D 89.908 109 9 2 9307 9413 119818191 119818083 1.290000e-28 139.0
39 TraesCS3D01G377100 chr6D 77.564 156 21 9 9164 9306 446484984 446485138 2.200000e-11 82.4
40 TraesCS3D01G377100 chr6D 87.879 66 6 2 8904 8969 371534722 371534785 1.030000e-09 76.8
41 TraesCS3D01G377100 chr5D 93.214 280 19 0 6185 6464 7559709 7559988 6.880000e-111 412.0
42 TraesCS3D01G377100 chr5D 90.164 61 5 1 9238 9297 339622377 339622317 2.850000e-10 78.7
43 TraesCS3D01G377100 chr5D 83.099 71 9 2 8902 8969 399216361 399216431 2.870000e-05 62.1
44 TraesCS3D01G377100 chr4D 92.857 280 20 0 6185 6464 313032106 313032385 3.200000e-109 407.0
45 TraesCS3D01G377100 chr1D 76.545 631 122 17 7602 8211 364769498 364770123 1.190000e-83 322.0
46 TraesCS3D01G377100 chr1D 79.292 367 74 2 2893 3258 364764304 364764669 1.230000e-63 255.0
47 TraesCS3D01G377100 chr1D 88.393 112 12 1 9304 9415 258301917 258302027 6.000000e-27 134.0
48 TraesCS3D01G377100 chr1D 85.217 115 16 1 3367 3480 364765011 364765125 6.040000e-22 117.0
49 TraesCS3D01G377100 chr1A 76.545 631 122 18 7602 8211 463826496 463827121 1.190000e-83 322.0
50 TraesCS3D01G377100 chr1A 79.564 367 73 2 2893 3258 463822047 463822412 2.640000e-65 261.0
51 TraesCS3D01G377100 chr1A 84.252 127 19 1 3367 3492 463822754 463822880 1.300000e-23 122.0
52 TraesCS3D01G377100 chr1A 78.261 138 26 4 9171 9306 488190849 488190984 1.700000e-12 86.1
53 TraesCS3D01G377100 chr1B 76.070 631 125 17 7602 8211 488214646 488215271 1.200000e-78 305.0
54 TraesCS3D01G377100 chr1B 97.059 34 1 0 9171 9204 122360575 122360542 3.710000e-04 58.4
55 TraesCS3D01G377100 chr1B 100.000 28 0 0 4054 4081 110618669 110618696 1.700000e-02 52.8
56 TraesCS3D01G377100 chr2B 90.435 115 9 2 9304 9417 667139 667252 5.960000e-32 150.0
57 TraesCS3D01G377100 chr2B 88.889 108 11 1 9307 9413 148251555 148251448 2.160000e-26 132.0
58 TraesCS3D01G377100 chr2B 87.755 49 6 0 9171 9219 653970460 653970508 3.710000e-04 58.4
59 TraesCS3D01G377100 chr7D 90.826 109 9 1 9307 9414 365079936 365079828 2.770000e-30 145.0
60 TraesCS3D01G377100 chr4B 87.500 112 12 2 9307 9416 211658932 211658821 2.790000e-25 128.0
61 TraesCS3D01G377100 chr2D 88.406 69 8 0 9238 9306 101690617 101690685 6.130000e-12 84.2
62 TraesCS3D01G377100 chr2D 95.238 42 2 0 9160 9201 422825169 422825128 6.170000e-07 67.6
63 TraesCS3D01G377100 chr5B 76.821 151 32 3 9158 9306 658585924 658586073 2.200000e-11 82.4
64 TraesCS3D01G377100 chr6A 88.060 67 8 0 9238 9304 601467191 601467257 7.930000e-11 80.5
65 TraesCS3D01G377100 chr4A 93.333 45 3 0 9245 9289 473288832 473288876 6.170000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G377100 chr3D 491956900 491966421 9521 True 4439.000000 15701 99.693500 1 9522 4 chr3D.!!$R2 9521
1 TraesCS3D01G377100 chr3B 652908585 652917028 8443 True 1684.375000 4767 95.249125 1 8746 8 chr3B.!!$R4 8745
2 TraesCS3D01G377100 chr3A 633846485 633859829 13344 True 1226.333333 3482 94.361917 1 9520 12 chr3A.!!$R2 9519
3 TraesCS3D01G377100 chr1D 364769498 364770123 625 False 322.000000 322 76.545000 7602 8211 1 chr1D.!!$F2 609
4 TraesCS3D01G377100 chr1A 463822047 463827121 5074 False 235.000000 322 80.120333 2893 8211 3 chr1A.!!$F2 5318
5 TraesCS3D01G377100 chr1B 488214646 488215271 625 False 305.000000 305 76.070000 7602 8211 1 chr1B.!!$F2 609

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
213 329 0.108756 GAAGGTGTCACCCGTCTAGC 60.109 60.000 18.80 0.00 39.75 3.42 F
611 1206 0.525455 TATGTGACTACAGCTGCGCG 60.525 55.000 15.27 0.00 40.79 6.86 F
1509 2340 0.973496 AAGGAGGAGAGGAAGACGGC 60.973 60.000 0.00 0.00 0.00 5.68 F
2619 3461 0.442699 GCTGCGTAACTGCAACCTAC 59.557 55.000 0.00 0.00 45.74 3.18 F
3200 4042 6.528321 TCTTGTAGCCAAAGATATGGATGAG 58.472 40.000 0.00 0.00 43.54 2.90 F
4896 6149 0.255890 ACTTTGCGGTCCAGCCATAT 59.744 50.000 3.72 0.00 36.97 1.78 F
6090 11141 0.036010 ATGTCCTCACTTGCGGAAGG 60.036 55.000 21.31 9.92 32.95 3.46 F
6430 11481 0.187606 GGGGTGGTGGAAAGAAAGGT 59.812 55.000 0.00 0.00 0.00 3.50 F
6431 11482 1.328279 GGGTGGTGGAAAGAAAGGTG 58.672 55.000 0.00 0.00 0.00 4.00 F
7392 12540 1.824230 TGCAAAAGTCAACACCTTGCT 59.176 42.857 6.64 0.00 40.32 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1068 1677 2.190578 GCCTCACCGGAATCCCAG 59.809 66.667 9.46 0.00 33.16 4.45 R
2599 3441 0.034198 TAGGTTGCAGTTACGCAGCA 59.966 50.000 14.56 7.09 44.11 4.41 R
3200 4042 0.179161 CAGCAGCAATCTTGAGCAGC 60.179 55.000 0.00 0.00 42.67 5.25 R
4048 5131 3.333980 ACTCCCTCCGATCCATATAGACA 59.666 47.826 0.00 0.00 0.00 3.41 R
4993 6246 0.664761 GCAGCAGTTGTGAGCTTGAA 59.335 50.000 0.00 0.00 39.50 2.69 R
6407 11458 0.109723 TTCTTTCCACCACCCCTTCG 59.890 55.000 0.00 0.00 0.00 3.79 R
7100 12245 1.134226 GCACAACAACATCAAGCTGC 58.866 50.000 0.00 0.00 0.00 5.25 R
7468 12633 3.877508 CCGTAATGTCTTCTCCATTTCCC 59.122 47.826 0.00 0.00 34.51 3.97 R
7691 12997 8.827832 AAAAGATCATTCTTCAATATCCCACA 57.172 30.769 0.00 0.00 41.42 4.17 R
9202 14586 0.846693 ACCTGAACTCTGTTGGGCTT 59.153 50.000 0.00 0.00 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.027469 GGCTTAGGATGTTATACCCCCG 60.027 54.545 0.00 0.00 0.00 5.73
105 106 4.799428 GGTAACAAAAGTTTGCGTTGCTTA 59.201 37.500 14.58 0.00 41.79 3.09
113 114 3.563808 AGTTTGCGTTGCTTAATCAGACA 59.436 39.130 0.00 0.00 0.00 3.41
150 151 3.248888 GGGGTTAGTGATACCTAGGCAT 58.751 50.000 9.30 0.00 35.92 4.40
162 163 2.780010 ACCTAGGCATGCTTCCTATGTT 59.220 45.455 18.92 0.00 33.21 2.71
195 196 3.104512 ACCCATCTAGGTTGATGAACGA 58.895 45.455 6.12 0.00 44.71 3.85
213 329 0.108756 GAAGGTGTCACCCGTCTAGC 60.109 60.000 18.80 0.00 39.75 3.42
225 341 0.806868 CGTCTAGCGTGGTGAACCTA 59.193 55.000 0.37 0.00 36.82 3.08
229 345 2.426024 TCTAGCGTGGTGAACCTACATC 59.574 50.000 0.37 0.00 36.82 3.06
230 346 1.267121 AGCGTGGTGAACCTACATCT 58.733 50.000 0.37 0.00 36.82 2.90
251 367 1.579429 GATGGTCGTTGGTTGCCAC 59.421 57.895 0.00 0.00 33.42 5.01
294 410 1.490574 ACTTCTTCTCCCAGATCCCG 58.509 55.000 0.00 0.00 0.00 5.14
341 457 3.489398 CGTTACTTCTCTTCCCAGATCCG 60.489 52.174 0.00 0.00 0.00 4.18
422 578 4.880426 TCCTCCCAGATCCCGCCC 62.880 72.222 0.00 0.00 0.00 6.13
465 939 2.427753 GGCCCCTCGCTAATCCAG 59.572 66.667 0.00 0.00 37.74 3.86
498 972 6.734871 GCACCGATTTTAGATTTTCCATACCC 60.735 42.308 0.00 0.00 0.00 3.69
511 985 4.422073 TCCATACCCTAAAGATGCACAG 57.578 45.455 0.00 0.00 0.00 3.66
514 988 2.119801 ACCCTAAAGATGCACAGCAG 57.880 50.000 0.00 0.00 43.65 4.24
524 1001 5.943706 AGATGCACAGCAGAAATGATATC 57.056 39.130 0.00 0.00 43.65 1.63
527 1004 3.881089 TGCACAGCAGAAATGATATCTGG 59.119 43.478 3.98 0.00 43.60 3.86
528 1005 3.304525 GCACAGCAGAAATGATATCTGGC 60.305 47.826 3.98 0.00 43.60 4.85
529 1006 3.252701 CACAGCAGAAATGATATCTGGCC 59.747 47.826 3.98 0.00 43.60 5.36
531 1008 3.752222 CAGCAGAAATGATATCTGGCCTC 59.248 47.826 3.32 0.00 43.60 4.70
546 1024 1.274596 GCCTCGCAAAATGAATGCTG 58.725 50.000 0.00 0.00 41.64 4.41
552 1030 3.377798 TCGCAAAATGAATGCTGCAGATA 59.622 39.130 20.43 5.62 41.64 1.98
556 1034 7.119553 TCGCAAAATGAATGCTGCAGATATATA 59.880 33.333 20.43 4.17 41.64 0.86
558 1036 9.582431 GCAAAATGAATGCTGCAGATATATATT 57.418 29.630 20.43 11.36 40.64 1.28
611 1206 0.525455 TATGTGACTACAGCTGCGCG 60.525 55.000 15.27 0.00 40.79 6.86
637 1232 1.738099 CCTCTTAACTGCGCGCACT 60.738 57.895 33.09 22.52 0.00 4.40
1025 1634 2.193248 CCAATTCCCCTCCGAGGC 59.807 66.667 9.17 0.00 32.73 4.70
1089 1698 2.722201 GGATTCCGGTGAGGCTCGT 61.722 63.158 10.42 0.00 40.77 4.18
1091 1700 2.227089 GATTCCGGTGAGGCTCGTGT 62.227 60.000 10.42 0.00 40.77 4.49
1093 1702 2.430382 TTCCGGTGAGGCTCGTGTTC 62.430 60.000 10.42 0.00 40.77 3.18
1099 1708 2.600769 AGGCTCGTGTTCCTCGGT 60.601 61.111 0.00 0.00 0.00 4.69
1114 1723 1.913762 CGGTGGAGAGGGGAGTGTT 60.914 63.158 0.00 0.00 0.00 3.32
1450 2278 3.224324 AGCGACACCACACTCGGT 61.224 61.111 0.00 0.00 41.07 4.69
1509 2340 0.973496 AAGGAGGAGAGGAAGACGGC 60.973 60.000 0.00 0.00 0.00 5.68
1594 2425 2.828520 ACAACATCAACAACCACCACAA 59.171 40.909 0.00 0.00 0.00 3.33
1615 2446 2.426738 ACATCAACAACCACCACAACAG 59.573 45.455 0.00 0.00 0.00 3.16
1675 2506 2.347490 GAAACTGCCGCCTCTGGA 59.653 61.111 0.00 0.00 0.00 3.86
1805 2636 2.687914 GCCCTGCCCATCATCTTAGTTT 60.688 50.000 0.00 0.00 0.00 2.66
1918 2750 7.324616 GCAGATTTGTTAGTGTCAATTCAGTTC 59.675 37.037 0.00 0.00 31.67 3.01
2461 3303 2.981302 TGATCTCGTGTGCCCAGG 59.019 61.111 0.00 0.00 0.00 4.45
2462 3304 2.512515 GATCTCGTGTGCCCAGGC 60.513 66.667 0.38 0.38 42.35 4.85
2463 3305 4.101448 ATCTCGTGTGCCCAGGCC 62.101 66.667 6.14 0.00 41.09 5.19
2465 3307 4.415150 CTCGTGTGCCCAGGCCAT 62.415 66.667 5.01 0.00 41.09 4.40
2466 3308 4.720902 TCGTGTGCCCAGGCCATG 62.721 66.667 5.01 9.27 41.09 3.66
2478 3320 2.301346 CAGGCCATGGACTATGAAACC 58.699 52.381 23.06 5.35 39.21 3.27
2479 3321 2.092212 CAGGCCATGGACTATGAAACCT 60.092 50.000 23.06 7.96 39.21 3.50
2480 3322 2.092212 AGGCCATGGACTATGAAACCTG 60.092 50.000 22.06 0.00 39.21 4.00
2481 3323 2.092429 GGCCATGGACTATGAAACCTGA 60.092 50.000 18.40 0.00 39.21 3.86
2482 3324 3.435601 GGCCATGGACTATGAAACCTGAT 60.436 47.826 18.40 0.00 39.21 2.90
2483 3325 4.202461 GGCCATGGACTATGAAACCTGATA 60.202 45.833 18.40 0.00 39.21 2.15
2484 3326 5.515534 GGCCATGGACTATGAAACCTGATAT 60.516 44.000 18.40 0.00 39.21 1.63
2485 3327 5.413833 GCCATGGACTATGAAACCTGATATG 59.586 44.000 18.40 0.00 39.21 1.78
2486 3328 5.942236 CCATGGACTATGAAACCTGATATGG 59.058 44.000 5.56 0.00 39.21 2.74
2487 3329 4.973168 TGGACTATGAAACCTGATATGGC 58.027 43.478 0.00 0.00 0.00 4.40
2488 3330 4.660303 TGGACTATGAAACCTGATATGGCT 59.340 41.667 0.00 0.00 0.00 4.75
2489 3331 5.132648 TGGACTATGAAACCTGATATGGCTT 59.867 40.000 0.00 0.00 0.00 4.35
2490 3332 5.471456 GGACTATGAAACCTGATATGGCTTG 59.529 44.000 0.00 0.00 0.00 4.01
2491 3333 4.823989 ACTATGAAACCTGATATGGCTTGC 59.176 41.667 0.00 0.00 0.00 4.01
2492 3334 3.370840 TGAAACCTGATATGGCTTGCT 57.629 42.857 0.00 0.00 0.00 3.91
2493 3335 4.502105 TGAAACCTGATATGGCTTGCTA 57.498 40.909 0.00 0.00 0.00 3.49
2494 3336 5.052693 TGAAACCTGATATGGCTTGCTAT 57.947 39.130 0.00 0.00 0.00 2.97
2495 3337 6.186420 TGAAACCTGATATGGCTTGCTATA 57.814 37.500 1.36 1.36 0.00 1.31
2496 3338 6.600388 TGAAACCTGATATGGCTTGCTATAA 58.400 36.000 2.96 0.00 0.00 0.98
2497 3339 7.059788 TGAAACCTGATATGGCTTGCTATAAA 58.940 34.615 2.96 0.00 0.00 1.40
2498 3340 6.884280 AACCTGATATGGCTTGCTATAAAC 57.116 37.500 2.96 2.37 0.00 2.01
2499 3341 6.192970 ACCTGATATGGCTTGCTATAAACT 57.807 37.500 2.96 0.00 0.00 2.66
2500 3342 6.605119 ACCTGATATGGCTTGCTATAAACTT 58.395 36.000 2.96 0.00 0.00 2.66
2501 3343 6.488006 ACCTGATATGGCTTGCTATAAACTTG 59.512 38.462 2.96 0.00 0.00 3.16
2502 3344 6.488006 CCTGATATGGCTTGCTATAAACTTGT 59.512 38.462 2.96 0.00 0.00 3.16
2503 3345 7.013655 CCTGATATGGCTTGCTATAAACTTGTT 59.986 37.037 2.96 0.00 0.00 2.83
2504 3346 8.972458 TGATATGGCTTGCTATAAACTTGTTA 57.028 30.769 2.96 0.00 0.00 2.41
2505 3347 9.573166 TGATATGGCTTGCTATAAACTTGTTAT 57.427 29.630 2.96 0.00 0.00 1.89
2508 3350 7.461182 TGGCTTGCTATAAACTTGTTATTGT 57.539 32.000 0.00 0.00 0.00 2.71
2509 3351 7.891561 TGGCTTGCTATAAACTTGTTATTGTT 58.108 30.769 0.00 0.00 0.00 2.83
2510 3352 8.364142 TGGCTTGCTATAAACTTGTTATTGTTT 58.636 29.630 0.00 0.00 39.37 2.83
2511 3353 8.647226 GGCTTGCTATAAACTTGTTATTGTTTG 58.353 33.333 0.00 0.00 37.06 2.93
2512 3354 9.191995 GCTTGCTATAAACTTGTTATTGTTTGT 57.808 29.630 0.00 0.00 37.06 2.83
2519 3361 9.893305 ATAAACTTGTTATTGTTTGTAGCTGTC 57.107 29.630 0.00 0.00 37.06 3.51
2520 3362 7.568199 AACTTGTTATTGTTTGTAGCTGTCT 57.432 32.000 0.00 0.00 0.00 3.41
2521 3363 6.959361 ACTTGTTATTGTTTGTAGCTGTCTG 58.041 36.000 0.00 0.00 0.00 3.51
2522 3364 6.765989 ACTTGTTATTGTTTGTAGCTGTCTGA 59.234 34.615 0.00 0.00 0.00 3.27
2523 3365 6.785488 TGTTATTGTTTGTAGCTGTCTGAG 57.215 37.500 0.00 0.00 0.00 3.35
2524 3366 6.288294 TGTTATTGTTTGTAGCTGTCTGAGT 58.712 36.000 0.00 0.00 0.00 3.41
2525 3367 6.202762 TGTTATTGTTTGTAGCTGTCTGAGTG 59.797 38.462 0.00 0.00 0.00 3.51
2526 3368 2.483876 TGTTTGTAGCTGTCTGAGTGC 58.516 47.619 0.00 0.00 0.00 4.40
2527 3369 2.158971 TGTTTGTAGCTGTCTGAGTGCA 60.159 45.455 0.00 0.00 0.00 4.57
2528 3370 2.445565 TTGTAGCTGTCTGAGTGCAG 57.554 50.000 0.00 3.27 43.67 4.41
2529 3371 1.332195 TGTAGCTGTCTGAGTGCAGT 58.668 50.000 0.00 0.00 42.84 4.40
2530 3372 2.514803 TGTAGCTGTCTGAGTGCAGTA 58.485 47.619 0.00 0.00 42.84 2.74
2531 3373 2.890945 TGTAGCTGTCTGAGTGCAGTAA 59.109 45.455 0.00 0.00 42.84 2.24
2532 3374 3.320826 TGTAGCTGTCTGAGTGCAGTAAA 59.679 43.478 0.00 0.00 42.84 2.01
2533 3375 2.760374 AGCTGTCTGAGTGCAGTAAAC 58.240 47.619 0.00 0.00 42.84 2.01
2534 3376 2.366916 AGCTGTCTGAGTGCAGTAAACT 59.633 45.455 0.00 0.00 42.84 2.66
2535 3377 3.574396 AGCTGTCTGAGTGCAGTAAACTA 59.426 43.478 0.00 0.00 42.84 2.24
2536 3378 3.923461 GCTGTCTGAGTGCAGTAAACTAG 59.077 47.826 0.00 0.00 42.84 2.57
2537 3379 4.559704 GCTGTCTGAGTGCAGTAAACTAGT 60.560 45.833 0.00 0.00 42.84 2.57
2538 3380 4.871513 TGTCTGAGTGCAGTAAACTAGTG 58.128 43.478 0.00 0.00 42.84 2.74
2539 3381 4.583073 TGTCTGAGTGCAGTAAACTAGTGA 59.417 41.667 0.00 0.00 42.84 3.41
2540 3382 5.068591 TGTCTGAGTGCAGTAAACTAGTGAA 59.931 40.000 0.00 0.00 42.84 3.18
2541 3383 5.631512 GTCTGAGTGCAGTAAACTAGTGAAG 59.368 44.000 0.00 0.00 42.84 3.02
2542 3384 4.883083 TGAGTGCAGTAAACTAGTGAAGG 58.117 43.478 0.00 0.00 0.00 3.46
2543 3385 4.246458 GAGTGCAGTAAACTAGTGAAGGG 58.754 47.826 0.00 0.00 0.00 3.95
2544 3386 3.901844 AGTGCAGTAAACTAGTGAAGGGA 59.098 43.478 0.00 0.00 0.00 4.20
2545 3387 4.532521 AGTGCAGTAAACTAGTGAAGGGAT 59.467 41.667 0.00 0.00 0.00 3.85
2546 3388 4.631813 GTGCAGTAAACTAGTGAAGGGATG 59.368 45.833 0.00 0.00 0.00 3.51
2547 3389 4.530553 TGCAGTAAACTAGTGAAGGGATGA 59.469 41.667 0.00 0.00 0.00 2.92
2548 3390 5.189736 TGCAGTAAACTAGTGAAGGGATGAT 59.810 40.000 0.00 0.00 0.00 2.45
2549 3391 6.116126 GCAGTAAACTAGTGAAGGGATGATT 58.884 40.000 0.00 0.00 0.00 2.57
2550 3392 6.258947 GCAGTAAACTAGTGAAGGGATGATTC 59.741 42.308 0.00 0.00 0.00 2.52
2551 3393 7.331026 CAGTAAACTAGTGAAGGGATGATTCA 58.669 38.462 0.00 0.00 34.37 2.57
2552 3394 7.493971 CAGTAAACTAGTGAAGGGATGATTCAG 59.506 40.741 0.00 0.00 37.35 3.02
2553 3395 6.380079 AAACTAGTGAAGGGATGATTCAGT 57.620 37.500 0.00 2.02 41.84 3.41
2554 3396 7.496346 AAACTAGTGAAGGGATGATTCAGTA 57.504 36.000 0.00 3.87 40.12 2.74
2555 3397 7.682787 AACTAGTGAAGGGATGATTCAGTAT 57.317 36.000 0.00 0.00 40.20 2.12
2556 3398 7.682787 ACTAGTGAAGGGATGATTCAGTATT 57.317 36.000 0.00 0.00 40.20 1.89
2557 3399 7.731054 ACTAGTGAAGGGATGATTCAGTATTC 58.269 38.462 0.00 0.00 40.20 1.75
2558 3400 6.821616 AGTGAAGGGATGATTCAGTATTCT 57.178 37.500 0.00 0.00 38.30 2.40
2559 3401 7.205515 AGTGAAGGGATGATTCAGTATTCTT 57.794 36.000 0.00 0.00 38.30 2.52
2560 3402 8.324191 AGTGAAGGGATGATTCAGTATTCTTA 57.676 34.615 0.00 0.00 38.30 2.10
2561 3403 8.943085 AGTGAAGGGATGATTCAGTATTCTTAT 58.057 33.333 0.00 0.00 38.30 1.73
2562 3404 9.213799 GTGAAGGGATGATTCAGTATTCTTATC 57.786 37.037 0.00 0.00 37.35 1.75
2563 3405 8.937835 TGAAGGGATGATTCAGTATTCTTATCA 58.062 33.333 0.00 0.00 32.96 2.15
2564 3406 9.213799 GAAGGGATGATTCAGTATTCTTATCAC 57.786 37.037 0.00 0.00 30.30 3.06
2565 3407 8.267620 AGGGATGATTCAGTATTCTTATCACA 57.732 34.615 0.00 0.00 30.30 3.58
2566 3408 8.153550 AGGGATGATTCAGTATTCTTATCACAC 58.846 37.037 0.00 0.00 30.30 3.82
2567 3409 8.153550 GGGATGATTCAGTATTCTTATCACACT 58.846 37.037 0.00 0.00 30.30 3.55
2568 3410 8.986847 GGATGATTCAGTATTCTTATCACACTG 58.013 37.037 0.00 0.00 38.34 3.66
2569 3411 7.776933 TGATTCAGTATTCTTATCACACTGC 57.223 36.000 0.00 0.00 37.20 4.40
2570 3412 7.330262 TGATTCAGTATTCTTATCACACTGCA 58.670 34.615 0.00 0.00 37.20 4.41
2571 3413 7.493645 TGATTCAGTATTCTTATCACACTGCAG 59.506 37.037 13.48 13.48 37.20 4.41
2572 3414 5.111989 TCAGTATTCTTATCACACTGCAGC 58.888 41.667 15.27 0.00 37.20 5.25
2573 3415 5.105187 TCAGTATTCTTATCACACTGCAGCT 60.105 40.000 15.27 0.00 37.20 4.24
2574 3416 6.096846 TCAGTATTCTTATCACACTGCAGCTA 59.903 38.462 15.27 0.00 37.20 3.32
2575 3417 6.758416 CAGTATTCTTATCACACTGCAGCTAA 59.242 38.462 15.27 3.64 31.14 3.09
2576 3418 6.983307 AGTATTCTTATCACACTGCAGCTAAG 59.017 38.462 15.27 12.71 0.00 2.18
2577 3419 4.808414 TCTTATCACACTGCAGCTAAGT 57.192 40.909 15.27 4.66 0.00 2.24
2587 3429 2.086054 GCAGCTAAGTGCACTACAGT 57.914 50.000 22.01 6.93 45.94 3.55
2589 3431 2.341257 CAGCTAAGTGCACTACAGTGG 58.659 52.381 22.01 7.57 45.72 4.00
2590 3432 1.971357 AGCTAAGTGCACTACAGTGGT 59.029 47.619 22.01 11.06 45.72 4.16
2591 3433 3.056821 CAGCTAAGTGCACTACAGTGGTA 60.057 47.826 22.01 5.87 45.72 3.25
2592 3434 3.056749 AGCTAAGTGCACTACAGTGGTAC 60.057 47.826 22.01 7.23 45.72 3.34
2593 3435 3.305813 GCTAAGTGCACTACAGTGGTACA 60.306 47.826 22.01 0.00 45.72 2.90
2606 3448 2.465860 TGGTACACTAAATGCTGCGT 57.534 45.000 0.00 0.00 0.00 5.24
2607 3449 3.596310 TGGTACACTAAATGCTGCGTA 57.404 42.857 0.00 0.00 0.00 4.42
2608 3450 3.927854 TGGTACACTAAATGCTGCGTAA 58.072 40.909 0.00 0.00 0.00 3.18
2609 3451 3.680937 TGGTACACTAAATGCTGCGTAAC 59.319 43.478 0.00 0.00 0.00 2.50
2610 3452 3.930848 GGTACACTAAATGCTGCGTAACT 59.069 43.478 0.00 0.00 0.00 2.24
2611 3453 4.201685 GGTACACTAAATGCTGCGTAACTG 60.202 45.833 0.00 0.00 0.00 3.16
2612 3454 2.159627 ACACTAAATGCTGCGTAACTGC 59.840 45.455 0.00 0.00 43.16 4.40
2617 3459 3.655481 GCTGCGTAACTGCAACCT 58.345 55.556 0.00 0.00 45.74 3.50
2618 3460 2.835605 GCTGCGTAACTGCAACCTA 58.164 52.632 0.00 0.00 45.74 3.08
2619 3461 0.442699 GCTGCGTAACTGCAACCTAC 59.557 55.000 0.00 0.00 45.74 3.18
2728 3570 9.903682 GCCTTTATTACGACATCTACTGTAATA 57.096 33.333 0.00 0.00 38.54 0.98
3200 4042 6.528321 TCTTGTAGCCAAAGATATGGATGAG 58.472 40.000 0.00 0.00 43.54 2.90
3370 4447 9.463443 GTGCTATTGTGTTCTTATTGAAGTTTT 57.537 29.630 0.00 0.00 35.01 2.43
3771 4853 6.707599 AAGAGCGTATTAGTTTCTTCACAC 57.292 37.500 0.00 0.00 0.00 3.82
4021 5104 7.027874 TGACATGTTTTTAATACTCCCTCCT 57.972 36.000 0.00 0.00 0.00 3.69
4049 5132 9.330063 TCCATATTGCTTGTCTTAGATTTAGTG 57.670 33.333 0.00 0.00 0.00 2.74
4050 5133 9.113838 CCATATTGCTTGTCTTAGATTTAGTGT 57.886 33.333 0.00 0.00 0.00 3.55
4529 5777 9.905171 GAATCTTTCTTTTAAGAGACATGCTTT 57.095 29.630 0.00 0.00 37.55 3.51
4545 5793 5.009010 ACATGCTTTATGCTATTAGCCACAC 59.991 40.000 13.01 0.00 41.51 3.82
4896 6149 0.255890 ACTTTGCGGTCCAGCCATAT 59.744 50.000 3.72 0.00 36.97 1.78
4897 6150 1.488812 ACTTTGCGGTCCAGCCATATA 59.511 47.619 3.72 0.00 36.97 0.86
4959 6212 7.654520 CCCATATGCAATTTAATCAACTTCCAG 59.345 37.037 0.00 0.00 0.00 3.86
5277 6881 1.265365 GTTCTGTTTGCAGGTGAGAGC 59.735 52.381 0.00 0.00 42.78 4.09
5842 7555 5.569059 GTGCCATAACTTCAGTTTCATTTCG 59.431 40.000 0.00 0.00 39.31 3.46
5945 7658 2.100197 CAGGTACTTCCCGATCAGACA 58.900 52.381 0.00 0.00 34.60 3.41
6090 11141 0.036010 ATGTCCTCACTTGCGGAAGG 60.036 55.000 21.31 9.92 32.95 3.46
6133 11184 0.892755 TCGTTAACTGTGCGATCCCT 59.107 50.000 3.71 0.00 0.00 4.20
6180 11231 8.729805 TCCAAATAAATTGCAACTTTTTGAGT 57.270 26.923 19.97 0.00 37.72 3.41
6181 11232 8.825745 TCCAAATAAATTGCAACTTTTTGAGTC 58.174 29.630 19.97 0.00 36.16 3.36
6182 11233 8.610896 CCAAATAAATTGCAACTTTTTGAGTCA 58.389 29.630 19.97 0.00 36.16 3.41
6183 11234 9.640974 CAAATAAATTGCAACTTTTTGAGTCAG 57.359 29.630 16.30 0.00 32.43 3.51
6184 11235 8.947055 AATAAATTGCAACTTTTTGAGTCAGT 57.053 26.923 0.00 0.00 37.72 3.41
6186 11237 7.992180 AAATTGCAACTTTTTGAGTCAGTAG 57.008 32.000 0.00 0.00 37.72 2.57
6187 11238 6.942532 ATTGCAACTTTTTGAGTCAGTAGA 57.057 33.333 0.00 0.00 37.72 2.59
6188 11239 6.751514 TTGCAACTTTTTGAGTCAGTAGAA 57.248 33.333 0.00 0.00 37.72 2.10
6189 11240 6.119144 TGCAACTTTTTGAGTCAGTAGAAC 57.881 37.500 0.00 0.00 37.72 3.01
6190 11241 5.645929 TGCAACTTTTTGAGTCAGTAGAACA 59.354 36.000 0.00 0.00 37.72 3.18
6191 11242 6.150307 TGCAACTTTTTGAGTCAGTAGAACAA 59.850 34.615 0.00 0.00 37.72 2.83
6192 11243 7.148086 TGCAACTTTTTGAGTCAGTAGAACAAT 60.148 33.333 0.00 0.00 37.72 2.71
6193 11244 7.166473 GCAACTTTTTGAGTCAGTAGAACAATG 59.834 37.037 0.00 0.00 37.72 2.82
6194 11245 6.729187 ACTTTTTGAGTCAGTAGAACAATGC 58.271 36.000 0.00 0.00 31.20 3.56
6195 11246 5.689383 TTTTGAGTCAGTAGAACAATGCC 57.311 39.130 0.00 0.00 0.00 4.40
6196 11247 3.334583 TGAGTCAGTAGAACAATGCCC 57.665 47.619 0.00 0.00 0.00 5.36
6197 11248 2.271800 GAGTCAGTAGAACAATGCCCG 58.728 52.381 0.00 0.00 0.00 6.13
6198 11249 1.623811 AGTCAGTAGAACAATGCCCGT 59.376 47.619 0.00 0.00 0.00 5.28
6199 11250 1.732259 GTCAGTAGAACAATGCCCGTG 59.268 52.381 0.00 0.00 0.00 4.94
6200 11251 0.447801 CAGTAGAACAATGCCCGTGC 59.552 55.000 0.00 0.00 38.26 5.34
6201 11252 1.019278 AGTAGAACAATGCCCGTGCG 61.019 55.000 0.00 0.00 41.78 5.34
6202 11253 1.004320 TAGAACAATGCCCGTGCGT 60.004 52.632 0.00 0.00 41.78 5.24
6207 11258 3.600694 AATGCCCGTGCGTTGCAA 61.601 55.556 0.00 0.00 44.90 4.08
6208 11259 3.839642 AATGCCCGTGCGTTGCAAC 62.840 57.895 19.89 19.89 44.90 4.17
6230 11281 9.017669 GCAACGGGATATAAATATTCTACTACG 57.982 37.037 0.00 0.00 0.00 3.51
6240 11291 9.823098 ATAAATATTCTACTACGTTAGCTCGTG 57.177 33.333 10.46 3.89 43.93 4.35
6247 11298 4.666237 ACTACGTTAGCTCGTGATTTACC 58.334 43.478 10.46 0.00 43.93 2.85
6252 11303 4.491676 GTTAGCTCGTGATTTACCTGTCA 58.508 43.478 0.00 0.00 0.00 3.58
6253 11304 3.678056 AGCTCGTGATTTACCTGTCAA 57.322 42.857 0.00 0.00 0.00 3.18
6254 11305 4.207891 AGCTCGTGATTTACCTGTCAAT 57.792 40.909 0.00 0.00 0.00 2.57
6255 11306 5.339008 AGCTCGTGATTTACCTGTCAATA 57.661 39.130 0.00 0.00 0.00 1.90
6257 11308 6.349300 AGCTCGTGATTTACCTGTCAATAAT 58.651 36.000 0.00 0.00 0.00 1.28
6259 11310 7.985184 AGCTCGTGATTTACCTGTCAATAATAA 59.015 33.333 0.00 0.00 0.00 1.40
6260 11311 8.774586 GCTCGTGATTTACCTGTCAATAATAAT 58.225 33.333 0.00 0.00 0.00 1.28
6262 11313 8.556194 TCGTGATTTACCTGTCAATAATAATGC 58.444 33.333 0.00 0.00 0.00 3.56
6263 11314 7.530525 CGTGATTTACCTGTCAATAATAATGCG 59.469 37.037 0.00 0.00 0.00 4.73
6264 11315 8.556194 GTGATTTACCTGTCAATAATAATGCGA 58.444 33.333 0.00 0.00 0.00 5.10
6267 11318 9.897744 ATTTACCTGTCAATAATAATGCGATTG 57.102 29.630 0.00 0.00 32.85 2.67
6268 11319 6.942532 ACCTGTCAATAATAATGCGATTGT 57.057 33.333 0.00 0.00 33.27 2.71
6269 11320 6.728200 ACCTGTCAATAATAATGCGATTGTG 58.272 36.000 0.00 0.00 33.27 3.33
6270 11321 6.318648 ACCTGTCAATAATAATGCGATTGTGT 59.681 34.615 0.00 0.00 33.27 3.72
6271 11322 7.497579 ACCTGTCAATAATAATGCGATTGTGTA 59.502 33.333 0.00 0.00 33.27 2.90
6273 11324 9.715123 CTGTCAATAATAATGCGATTGTGTAAA 57.285 29.630 0.00 0.00 33.27 2.01
6283 11334 8.978564 AATGCGATTGTGTAAATAAATGTTCA 57.021 26.923 0.00 0.00 0.00 3.18
6285 11336 8.613613 TGCGATTGTGTAAATAAATGTTCATC 57.386 30.769 0.00 0.00 0.00 2.92
6286 11337 8.239998 TGCGATTGTGTAAATAAATGTTCATCA 58.760 29.630 0.00 0.00 0.00 3.07
6287 11338 9.071221 GCGATTGTGTAAATAAATGTTCATCAA 57.929 29.630 0.00 0.00 0.00 2.57
6296 11347 7.760131 AATAAATGTTCATCAAATTCTGCCG 57.240 32.000 0.00 0.00 0.00 5.69
6297 11348 3.788333 ATGTTCATCAAATTCTGCCGG 57.212 42.857 0.00 0.00 0.00 6.13
6298 11349 2.513753 TGTTCATCAAATTCTGCCGGT 58.486 42.857 1.90 0.00 0.00 5.28
6299 11350 2.228582 TGTTCATCAAATTCTGCCGGTG 59.771 45.455 1.90 0.00 0.00 4.94
6300 11351 2.487762 GTTCATCAAATTCTGCCGGTGA 59.512 45.455 1.90 0.00 0.00 4.02
6301 11352 2.789213 TCATCAAATTCTGCCGGTGAA 58.211 42.857 1.90 8.97 0.00 3.18
6303 11354 3.763360 TCATCAAATTCTGCCGGTGAATT 59.237 39.130 22.81 22.81 43.44 2.17
6304 11355 4.946772 TCATCAAATTCTGCCGGTGAATTA 59.053 37.500 26.16 17.51 41.54 1.40
6305 11356 4.695217 TCAAATTCTGCCGGTGAATTAC 57.305 40.909 26.16 2.61 41.54 1.89
6306 11357 3.442273 TCAAATTCTGCCGGTGAATTACC 59.558 43.478 26.16 1.95 46.56 2.85
6330 11381 9.143155 ACCTTGTATTTTGATTAGAAGTTTGGT 57.857 29.630 0.00 0.00 0.00 3.67
6373 11424 9.856162 AATTGGTTCAGAAGGTAAGTAACTTAA 57.144 29.630 0.00 0.00 0.00 1.85
6375 11426 8.253867 TGGTTCAGAAGGTAAGTAACTTAAGA 57.746 34.615 10.09 0.00 0.00 2.10
6376 11427 8.877195 TGGTTCAGAAGGTAAGTAACTTAAGAT 58.123 33.333 10.09 0.00 0.00 2.40
6377 11428 9.152595 GGTTCAGAAGGTAAGTAACTTAAGATG 57.847 37.037 10.09 0.00 0.00 2.90
6378 11429 9.924650 GTTCAGAAGGTAAGTAACTTAAGATGA 57.075 33.333 10.09 0.00 0.00 2.92
6408 11459 9.605275 ATTATCATATACATGGAAGATTGGACG 57.395 33.333 0.00 0.00 32.61 4.79
6409 11460 6.664428 TCATATACATGGAAGATTGGACGA 57.336 37.500 0.00 0.00 32.61 4.20
6410 11461 7.061566 TCATATACATGGAAGATTGGACGAA 57.938 36.000 0.00 0.00 32.61 3.85
6411 11462 7.154656 TCATATACATGGAAGATTGGACGAAG 58.845 38.462 0.00 0.00 32.61 3.79
6412 11463 2.991250 ACATGGAAGATTGGACGAAGG 58.009 47.619 0.00 0.00 0.00 3.46
6413 11464 2.292267 CATGGAAGATTGGACGAAGGG 58.708 52.381 0.00 0.00 0.00 3.95
6415 11466 0.618981 GGAAGATTGGACGAAGGGGT 59.381 55.000 0.00 0.00 0.00 4.95
6416 11467 1.679032 GGAAGATTGGACGAAGGGGTG 60.679 57.143 0.00 0.00 0.00 4.61
6418 11469 0.840722 AGATTGGACGAAGGGGTGGT 60.841 55.000 0.00 0.00 0.00 4.16
6419 11470 0.676782 GATTGGACGAAGGGGTGGTG 60.677 60.000 0.00 0.00 0.00 4.17
6420 11471 2.137177 ATTGGACGAAGGGGTGGTGG 62.137 60.000 0.00 0.00 0.00 4.61
6422 11473 2.522367 GGACGAAGGGGTGGTGGAA 61.522 63.158 0.00 0.00 0.00 3.53
6423 11474 1.452801 GACGAAGGGGTGGTGGAAA 59.547 57.895 0.00 0.00 0.00 3.13
6424 11475 0.605589 GACGAAGGGGTGGTGGAAAG 60.606 60.000 0.00 0.00 0.00 2.62
6425 11476 1.057851 ACGAAGGGGTGGTGGAAAGA 61.058 55.000 0.00 0.00 0.00 2.52
6428 11479 2.239400 GAAGGGGTGGTGGAAAGAAAG 58.761 52.381 0.00 0.00 0.00 2.62
6429 11480 0.482887 AGGGGTGGTGGAAAGAAAGG 59.517 55.000 0.00 0.00 0.00 3.11
6430 11481 0.187606 GGGGTGGTGGAAAGAAAGGT 59.812 55.000 0.00 0.00 0.00 3.50
6431 11482 1.328279 GGGTGGTGGAAAGAAAGGTG 58.672 55.000 0.00 0.00 0.00 4.00
6433 11484 2.661718 GGTGGTGGAAAGAAAGGTGAA 58.338 47.619 0.00 0.00 0.00 3.18
6434 11485 3.028130 GGTGGTGGAAAGAAAGGTGAAA 58.972 45.455 0.00 0.00 0.00 2.69
6436 11487 4.501400 GGTGGTGGAAAGAAAGGTGAAATG 60.501 45.833 0.00 0.00 0.00 2.32
6437 11488 3.640967 TGGTGGAAAGAAAGGTGAAATGG 59.359 43.478 0.00 0.00 0.00 3.16
6438 11489 3.006859 GGTGGAAAGAAAGGTGAAATGGG 59.993 47.826 0.00 0.00 0.00 4.00
6439 11490 3.895041 GTGGAAAGAAAGGTGAAATGGGA 59.105 43.478 0.00 0.00 0.00 4.37
6440 11491 4.343814 GTGGAAAGAAAGGTGAAATGGGAA 59.656 41.667 0.00 0.00 0.00 3.97
7392 12540 1.824230 TGCAAAAGTCAACACCTTGCT 59.176 42.857 6.64 0.00 40.32 3.91
7468 12633 4.156739 GCTTACTGTTCCTCAAATCAAGGG 59.843 45.833 0.00 0.00 34.46 3.95
7839 13145 4.752101 GCATATCCTTGAGCTTGTCGTATT 59.248 41.667 0.00 0.00 0.00 1.89
8270 13589 1.689273 AGTCCTGGATACTTCGATGCC 59.311 52.381 0.00 0.00 37.61 4.40
8453 13774 0.189822 TGGGGTGAAAAGGAAAGGGG 59.810 55.000 0.00 0.00 0.00 4.79
8538 13859 3.588842 TGATGGAGAAAGGGACACTGATT 59.411 43.478 0.00 0.00 0.00 2.57
8560 13886 5.241403 TCTGTGTCATATTGTGTTTCCCT 57.759 39.130 0.00 0.00 0.00 4.20
8565 13891 5.294552 GTGTCATATTGTGTTTCCCTAGAGC 59.705 44.000 0.00 0.00 0.00 4.09
8633 13961 4.623932 TTATCAAGTGCTCCTTCTGTGT 57.376 40.909 0.00 0.00 0.00 3.72
8662 13990 4.087892 CTGACCTCGCCACCAGGG 62.088 72.222 0.00 0.00 35.01 4.45
8686 14014 1.444933 AGGTGTGGTTTCATCTGGGA 58.555 50.000 0.00 0.00 0.00 4.37
8717 14045 6.555812 AACTCATCTTCCGAAAGTTAAACC 57.444 37.500 0.00 0.00 31.39 3.27
8795 14123 1.608283 GCGTAGGACTCCACAGCTTTT 60.608 52.381 0.00 0.00 0.00 2.27
8796 14124 2.767505 CGTAGGACTCCACAGCTTTTT 58.232 47.619 0.00 0.00 0.00 1.94
8825 14153 3.258123 TCAGGATCAGACGAACAATGTGA 59.742 43.478 0.00 0.00 0.00 3.58
8826 14154 3.615937 CAGGATCAGACGAACAATGTGAG 59.384 47.826 0.00 0.00 0.00 3.51
8828 14156 2.820059 TCAGACGAACAATGTGAGCT 57.180 45.000 0.00 0.00 0.00 4.09
8829 14157 3.111853 TCAGACGAACAATGTGAGCTT 57.888 42.857 0.00 0.00 0.00 3.74
8830 14158 2.802247 TCAGACGAACAATGTGAGCTTG 59.198 45.455 0.00 0.00 0.00 4.01
8831 14159 1.532868 AGACGAACAATGTGAGCTTGC 59.467 47.619 0.00 0.00 0.00 4.01
8832 14160 0.235665 ACGAACAATGTGAGCTTGCG 59.764 50.000 0.00 0.00 0.00 4.85
8884 14251 1.410517 CTTGGAGCATCTCTAGCCGAA 59.589 52.381 0.00 0.00 33.73 4.30
8915 14282 4.662966 TTGGACTACTACACCCTCTGTA 57.337 45.455 0.00 0.00 33.91 2.74
9128 14511 7.878477 TTTTAACTACTACTCACATTCCACG 57.122 36.000 0.00 0.00 0.00 4.94
9131 14514 3.825014 ACTACTACTCACATTCCACGTGT 59.175 43.478 15.65 0.00 35.79 4.49
9132 14515 3.026630 ACTACTCACATTCCACGTGTG 57.973 47.619 15.65 8.99 46.36 3.82
9150 14534 2.173782 TGTGGAGCTAACAAAACCCTCA 59.826 45.455 0.00 0.00 0.00 3.86
9158 14542 1.102978 ACAAAACCCTCACACACAGC 58.897 50.000 0.00 0.00 0.00 4.40
9169 14553 1.937223 CACACACAGCGAACCAAACTA 59.063 47.619 0.00 0.00 0.00 2.24
9172 14556 2.805671 CACACAGCGAACCAAACTATGA 59.194 45.455 0.00 0.00 0.00 2.15
9190 14574 7.639062 ACTATGATTGGATGGTTAGAAGGAT 57.361 36.000 0.00 0.00 0.00 3.24
9192 14576 8.820831 ACTATGATTGGATGGTTAGAAGGATAG 58.179 37.037 0.00 0.00 0.00 2.08
9195 14579 5.630415 TTGGATGGTTAGAAGGATAGTGG 57.370 43.478 0.00 0.00 0.00 4.00
9206 14590 2.861147 GGATAGTGGTATCCCAAGCC 57.139 55.000 0.53 0.00 46.69 4.35
9219 14603 1.242076 CCAAGCCCAACAGAGTTCAG 58.758 55.000 0.00 0.00 0.00 3.02
9227 14611 2.900546 CCAACAGAGTTCAGGTCCTAGT 59.099 50.000 0.00 0.00 0.00 2.57
9228 14612 4.087182 CCAACAGAGTTCAGGTCCTAGTA 58.913 47.826 0.00 0.00 0.00 1.82
9229 14613 4.712337 CCAACAGAGTTCAGGTCCTAGTAT 59.288 45.833 0.00 0.00 0.00 2.12
9231 14615 6.295916 CCAACAGAGTTCAGGTCCTAGTATTT 60.296 42.308 0.00 0.00 0.00 1.40
9232 14616 6.532988 ACAGAGTTCAGGTCCTAGTATTTC 57.467 41.667 0.00 0.00 0.00 2.17
9233 14617 6.257586 ACAGAGTTCAGGTCCTAGTATTTCT 58.742 40.000 0.00 0.00 0.00 2.52
9234 14618 7.411808 ACAGAGTTCAGGTCCTAGTATTTCTA 58.588 38.462 0.00 0.00 0.00 2.10
9235 14619 7.894364 ACAGAGTTCAGGTCCTAGTATTTCTAA 59.106 37.037 0.00 0.00 0.00 2.10
9236 14620 8.750298 CAGAGTTCAGGTCCTAGTATTTCTAAA 58.250 37.037 0.00 0.00 0.00 1.85
9284 14680 1.401539 CGATGTGCGTTCAGTGAGAGA 60.402 52.381 0.00 0.00 34.64 3.10
9287 14683 1.681264 TGTGCGTTCAGTGAGAGAAGA 59.319 47.619 0.00 0.00 0.00 2.87
9294 14690 2.583143 TCAGTGAGAGAAGACGTTCCA 58.417 47.619 0.00 0.00 32.48 3.53
9333 14772 1.839994 TCTCAAAGGTGCTCATAGGGG 59.160 52.381 0.00 0.00 0.00 4.79
9338 14777 0.941963 AGGTGCTCATAGGGGTAGGA 59.058 55.000 0.00 0.00 0.00 2.94
9339 14778 1.049402 GGTGCTCATAGGGGTAGGAC 58.951 60.000 0.00 0.00 0.00 3.85
9341 14780 0.260816 TGCTCATAGGGGTAGGACGT 59.739 55.000 0.00 0.00 0.00 4.34
9359 14798 1.715000 TGCGTGCGTGCATTCATAG 59.285 52.632 0.00 0.00 40.62 2.23
9376 14815 2.613026 TAGGGGTGAATGTATGTGCG 57.387 50.000 0.00 0.00 0.00 5.34
9383 14822 4.994852 GGGTGAATGTATGTGCGTATGTAT 59.005 41.667 0.00 0.00 0.00 2.29
9435 14876 1.101331 CCTCACACGTACTAGACCCC 58.899 60.000 0.00 0.00 0.00 4.95
9446 14887 2.632537 ACTAGACCCCACATGGAAGTT 58.367 47.619 0.00 0.00 37.39 2.66
9504 14945 6.015010 CGATTTCTAGGGGTAGATGATGTCTT 60.015 42.308 0.00 0.00 38.42 3.01
9520 14961 6.013379 TGATGTCTTCCTAGGGTAGATGATC 58.987 44.000 9.46 15.66 32.07 2.92
9521 14962 5.671463 TGTCTTCCTAGGGTAGATGATCT 57.329 43.478 9.46 0.00 32.07 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 1.105457 ACATGCATATGTGTGTGCCC 58.895 50.000 0.00 0.00 45.54 5.36
105 106 0.180406 GGGTATGGGCGTGTCTGATT 59.820 55.000 0.00 0.00 0.00 2.57
113 114 4.676363 CCAAATGGGTATGGGCGT 57.324 55.556 0.00 0.00 32.87 5.68
150 151 5.435686 AATGTACCAGAACATAGGAAGCA 57.564 39.130 0.00 0.00 39.16 3.91
162 163 5.535029 ACCTAGATGGGTTAATGTACCAGA 58.465 41.667 0.00 0.00 40.09 3.86
195 196 1.874345 CGCTAGACGGGTGACACCTT 61.874 60.000 23.72 11.52 38.64 3.50
213 329 2.421073 TCGTAGATGTAGGTTCACCACG 59.579 50.000 0.00 0.00 38.89 4.94
422 578 0.528684 GAATCGACGCAAGAGAGGGG 60.529 60.000 0.00 0.00 43.62 4.79
426 582 1.516386 GCCGAATCGACGCAAGAGA 60.516 57.895 3.36 0.00 43.62 3.10
465 939 6.663944 AATCTAAAATCGGTGCTCTGTTAC 57.336 37.500 0.00 0.00 0.00 2.50
498 972 5.556355 TCATTTCTGCTGTGCATCTTTAG 57.444 39.130 0.00 0.00 38.13 1.85
503 977 5.334957 CCAGATATCATTTCTGCTGTGCATC 60.335 44.000 5.32 0.00 39.42 3.91
511 985 2.740981 CGAGGCCAGATATCATTTCTGC 59.259 50.000 5.01 0.00 39.42 4.26
514 988 2.771089 TGCGAGGCCAGATATCATTTC 58.229 47.619 5.01 0.00 0.00 2.17
524 1001 1.917273 CATTCATTTTGCGAGGCCAG 58.083 50.000 5.01 0.00 0.00 4.85
527 1004 1.274596 CAGCATTCATTTTGCGAGGC 58.725 50.000 0.00 0.00 44.82 4.70
528 1005 1.274596 GCAGCATTCATTTTGCGAGG 58.725 50.000 0.00 0.00 44.82 4.63
529 1006 1.917955 CTGCAGCATTCATTTTGCGAG 59.082 47.619 0.00 0.00 44.82 5.03
531 1008 1.985334 TCTGCAGCATTCATTTTGCG 58.015 45.000 9.47 0.00 44.82 4.85
558 1036 7.448161 TCTGTAGCATTCATTCTTCTCCAAAAA 59.552 33.333 0.00 0.00 0.00 1.94
559 1037 6.942005 TCTGTAGCATTCATTCTTCTCCAAAA 59.058 34.615 0.00 0.00 0.00 2.44
560 1038 6.372659 GTCTGTAGCATTCATTCTTCTCCAAA 59.627 38.462 0.00 0.00 0.00 3.28
561 1039 5.877012 GTCTGTAGCATTCATTCTTCTCCAA 59.123 40.000 0.00 0.00 0.00 3.53
562 1040 5.423015 GTCTGTAGCATTCATTCTTCTCCA 58.577 41.667 0.00 0.00 0.00 3.86
611 1206 0.808060 GCAGTTAAGAGGAGGCGAGC 60.808 60.000 0.00 0.00 0.00 5.03
679 1274 1.227527 CAGCCCATCATAACGCGGA 60.228 57.895 12.47 0.00 0.00 5.54
1068 1677 2.190578 GCCTCACCGGAATCCCAG 59.809 66.667 9.46 0.00 33.16 4.45
1594 2425 2.426738 CTGTTGTGGTGGTTGTTGATGT 59.573 45.455 0.00 0.00 0.00 3.06
1615 2446 3.402691 CTGCTGCTGCTGCTGATGC 62.403 63.158 27.67 17.61 40.01 3.91
1805 2636 3.005684 CACATTTACAGCAAAGCAAGGGA 59.994 43.478 0.00 0.00 0.00 4.20
2444 3286 2.981302 CCTGGGCACACGAGATCA 59.019 61.111 0.00 0.00 0.00 2.92
2445 3287 2.512515 GCCTGGGCACACGAGATC 60.513 66.667 6.75 0.00 41.49 2.75
2446 3288 4.101448 GGCCTGGGCACACGAGAT 62.101 66.667 16.34 0.00 44.11 2.75
2448 3290 4.415150 ATGGCCTGGGCACACGAG 62.415 66.667 26.41 0.00 41.84 4.18
2449 3291 4.720902 CATGGCCTGGGCACACGA 62.721 66.667 26.41 1.76 41.84 4.35
2451 3293 4.365111 TCCATGGCCTGGGCACAC 62.365 66.667 26.41 0.00 45.98 3.82
2456 3298 0.846015 TTCATAGTCCATGGCCTGGG 59.154 55.000 17.89 13.00 45.98 4.45
2458 3300 2.092212 AGGTTTCATAGTCCATGGCCTG 60.092 50.000 5.31 1.08 33.48 4.85
2459 3301 2.092212 CAGGTTTCATAGTCCATGGCCT 60.092 50.000 6.96 2.81 35.16 5.19
2460 3302 2.092429 TCAGGTTTCATAGTCCATGGCC 60.092 50.000 6.96 0.00 35.16 5.36
2461 3303 3.281727 TCAGGTTTCATAGTCCATGGC 57.718 47.619 6.96 2.00 35.16 4.40
2462 3304 5.942236 CCATATCAGGTTTCATAGTCCATGG 59.058 44.000 4.97 4.97 35.16 3.66
2463 3305 5.413833 GCCATATCAGGTTTCATAGTCCATG 59.586 44.000 0.00 0.00 35.81 3.66
2464 3306 5.311649 AGCCATATCAGGTTTCATAGTCCAT 59.688 40.000 0.00 0.00 0.00 3.41
2465 3307 4.660303 AGCCATATCAGGTTTCATAGTCCA 59.340 41.667 0.00 0.00 0.00 4.02
2466 3308 5.234466 AGCCATATCAGGTTTCATAGTCC 57.766 43.478 0.00 0.00 0.00 3.85
2467 3309 5.049129 GCAAGCCATATCAGGTTTCATAGTC 60.049 44.000 0.00 0.00 28.79 2.59
2468 3310 4.823989 GCAAGCCATATCAGGTTTCATAGT 59.176 41.667 0.00 0.00 28.79 2.12
2469 3311 5.068636 AGCAAGCCATATCAGGTTTCATAG 58.931 41.667 0.00 0.00 28.79 2.23
2470 3312 5.052693 AGCAAGCCATATCAGGTTTCATA 57.947 39.130 0.00 0.00 28.79 2.15
2471 3313 3.907221 AGCAAGCCATATCAGGTTTCAT 58.093 40.909 0.00 0.00 28.79 2.57
2472 3314 3.370840 AGCAAGCCATATCAGGTTTCA 57.629 42.857 0.00 0.00 28.79 2.69
2473 3315 7.229506 AGTTTATAGCAAGCCATATCAGGTTTC 59.770 37.037 0.00 0.00 28.79 2.78
2474 3316 7.062957 AGTTTATAGCAAGCCATATCAGGTTT 58.937 34.615 0.00 0.00 31.74 3.27
2475 3317 6.605119 AGTTTATAGCAAGCCATATCAGGTT 58.395 36.000 0.00 0.00 0.00 3.50
2476 3318 6.192970 AGTTTATAGCAAGCCATATCAGGT 57.807 37.500 0.00 0.00 0.00 4.00
2477 3319 6.488006 ACAAGTTTATAGCAAGCCATATCAGG 59.512 38.462 0.00 0.00 0.00 3.86
2478 3320 7.502120 ACAAGTTTATAGCAAGCCATATCAG 57.498 36.000 0.00 0.00 0.00 2.90
2479 3321 7.880160 AACAAGTTTATAGCAAGCCATATCA 57.120 32.000 0.00 0.00 0.00 2.15
2482 3324 9.184523 ACAATAACAAGTTTATAGCAAGCCATA 57.815 29.630 0.00 0.00 0.00 2.74
2483 3325 8.066612 ACAATAACAAGTTTATAGCAAGCCAT 57.933 30.769 0.00 0.00 0.00 4.40
2484 3326 7.461182 ACAATAACAAGTTTATAGCAAGCCA 57.539 32.000 0.00 0.00 0.00 4.75
2485 3327 8.647226 CAAACAATAACAAGTTTATAGCAAGCC 58.353 33.333 0.00 0.00 36.28 4.35
2486 3328 9.191995 ACAAACAATAACAAGTTTATAGCAAGC 57.808 29.630 0.00 0.00 36.28 4.01
2493 3335 9.893305 GACAGCTACAAACAATAACAAGTTTAT 57.107 29.630 0.00 0.00 36.28 1.40
2494 3336 9.116067 AGACAGCTACAAACAATAACAAGTTTA 57.884 29.630 0.00 0.00 36.28 2.01
2495 3337 7.915397 CAGACAGCTACAAACAATAACAAGTTT 59.085 33.333 0.00 0.00 38.40 2.66
2496 3338 7.282224 TCAGACAGCTACAAACAATAACAAGTT 59.718 33.333 0.00 0.00 0.00 2.66
2497 3339 6.765989 TCAGACAGCTACAAACAATAACAAGT 59.234 34.615 0.00 0.00 0.00 3.16
2498 3340 7.041780 ACTCAGACAGCTACAAACAATAACAAG 60.042 37.037 0.00 0.00 0.00 3.16
2499 3341 6.765989 ACTCAGACAGCTACAAACAATAACAA 59.234 34.615 0.00 0.00 0.00 2.83
2500 3342 6.202762 CACTCAGACAGCTACAAACAATAACA 59.797 38.462 0.00 0.00 0.00 2.41
2501 3343 6.593978 CACTCAGACAGCTACAAACAATAAC 58.406 40.000 0.00 0.00 0.00 1.89
2502 3344 5.179368 GCACTCAGACAGCTACAAACAATAA 59.821 40.000 0.00 0.00 0.00 1.40
2503 3345 4.690748 GCACTCAGACAGCTACAAACAATA 59.309 41.667 0.00 0.00 0.00 1.90
2504 3346 3.499918 GCACTCAGACAGCTACAAACAAT 59.500 43.478 0.00 0.00 0.00 2.71
2505 3347 2.872245 GCACTCAGACAGCTACAAACAA 59.128 45.455 0.00 0.00 0.00 2.83
2506 3348 2.158971 TGCACTCAGACAGCTACAAACA 60.159 45.455 0.00 0.00 0.00 2.83
2507 3349 2.478134 CTGCACTCAGACAGCTACAAAC 59.522 50.000 0.00 0.00 42.95 2.93
2508 3350 2.103094 ACTGCACTCAGACAGCTACAAA 59.897 45.455 0.00 0.00 42.95 2.83
2509 3351 1.688735 ACTGCACTCAGACAGCTACAA 59.311 47.619 0.00 0.00 42.95 2.41
2510 3352 1.332195 ACTGCACTCAGACAGCTACA 58.668 50.000 0.00 0.00 42.95 2.74
2511 3353 3.577649 TTACTGCACTCAGACAGCTAC 57.422 47.619 0.00 0.00 42.95 3.58
2512 3354 3.574396 AGTTTACTGCACTCAGACAGCTA 59.426 43.478 0.00 0.00 42.95 3.32
2513 3355 2.366916 AGTTTACTGCACTCAGACAGCT 59.633 45.455 0.00 0.00 42.95 4.24
2514 3356 2.760374 AGTTTACTGCACTCAGACAGC 58.240 47.619 0.00 0.00 42.95 4.40
2515 3357 4.920340 CACTAGTTTACTGCACTCAGACAG 59.080 45.833 0.00 0.00 42.95 3.51
2516 3358 4.583073 TCACTAGTTTACTGCACTCAGACA 59.417 41.667 0.00 0.00 42.95 3.41
2517 3359 5.122512 TCACTAGTTTACTGCACTCAGAC 57.877 43.478 0.00 0.00 42.95 3.51
2518 3360 5.279006 CCTTCACTAGTTTACTGCACTCAGA 60.279 44.000 0.00 0.00 42.95 3.27
2519 3361 4.926238 CCTTCACTAGTTTACTGCACTCAG 59.074 45.833 0.00 0.00 45.71 3.35
2520 3362 4.262463 CCCTTCACTAGTTTACTGCACTCA 60.262 45.833 0.00 0.00 0.00 3.41
2521 3363 4.021368 TCCCTTCACTAGTTTACTGCACTC 60.021 45.833 0.00 0.00 0.00 3.51
2522 3364 3.901844 TCCCTTCACTAGTTTACTGCACT 59.098 43.478 0.00 0.00 0.00 4.40
2523 3365 4.267349 TCCCTTCACTAGTTTACTGCAC 57.733 45.455 0.00 0.00 0.00 4.57
2524 3366 4.530553 TCATCCCTTCACTAGTTTACTGCA 59.469 41.667 0.00 0.00 0.00 4.41
2525 3367 5.086104 TCATCCCTTCACTAGTTTACTGC 57.914 43.478 0.00 0.00 0.00 4.40
2526 3368 7.331026 TGAATCATCCCTTCACTAGTTTACTG 58.669 38.462 0.00 0.00 0.00 2.74
2527 3369 7.181125 ACTGAATCATCCCTTCACTAGTTTACT 59.819 37.037 0.00 0.00 0.00 2.24
2528 3370 7.331791 ACTGAATCATCCCTTCACTAGTTTAC 58.668 38.462 0.00 0.00 0.00 2.01
2529 3371 7.496346 ACTGAATCATCCCTTCACTAGTTTA 57.504 36.000 0.00 0.00 0.00 2.01
2530 3372 6.380079 ACTGAATCATCCCTTCACTAGTTT 57.620 37.500 0.00 0.00 0.00 2.66
2531 3373 7.682787 ATACTGAATCATCCCTTCACTAGTT 57.317 36.000 0.00 0.00 0.00 2.24
2532 3374 7.566879 AGAATACTGAATCATCCCTTCACTAGT 59.433 37.037 0.00 0.00 0.00 2.57
2533 3375 7.961351 AGAATACTGAATCATCCCTTCACTAG 58.039 38.462 0.00 0.00 0.00 2.57
2534 3376 7.921041 AGAATACTGAATCATCCCTTCACTA 57.079 36.000 0.00 0.00 0.00 2.74
2535 3377 6.821616 AGAATACTGAATCATCCCTTCACT 57.178 37.500 0.00 0.00 0.00 3.41
2536 3378 9.213799 GATAAGAATACTGAATCATCCCTTCAC 57.786 37.037 0.00 0.00 0.00 3.18
2537 3379 8.937835 TGATAAGAATACTGAATCATCCCTTCA 58.062 33.333 0.00 0.00 29.95 3.02
2538 3380 9.213799 GTGATAAGAATACTGAATCATCCCTTC 57.786 37.037 0.00 0.00 34.31 3.46
2539 3381 8.717717 TGTGATAAGAATACTGAATCATCCCTT 58.282 33.333 0.00 0.00 34.31 3.95
2540 3382 8.153550 GTGTGATAAGAATACTGAATCATCCCT 58.846 37.037 0.00 0.00 34.31 4.20
2541 3383 8.153550 AGTGTGATAAGAATACTGAATCATCCC 58.846 37.037 0.00 0.00 34.31 3.85
2542 3384 8.986847 CAGTGTGATAAGAATACTGAATCATCC 58.013 37.037 0.00 0.00 40.80 3.51
2543 3385 8.494347 GCAGTGTGATAAGAATACTGAATCATC 58.506 37.037 0.00 0.00 40.80 2.92
2544 3386 7.989170 TGCAGTGTGATAAGAATACTGAATCAT 59.011 33.333 0.00 0.00 40.80 2.45
2545 3387 7.330262 TGCAGTGTGATAAGAATACTGAATCA 58.670 34.615 0.00 0.00 40.80 2.57
2546 3388 7.518052 GCTGCAGTGTGATAAGAATACTGAATC 60.518 40.741 16.64 0.00 40.80 2.52
2547 3389 6.259608 GCTGCAGTGTGATAAGAATACTGAAT 59.740 38.462 16.64 0.00 40.80 2.57
2548 3390 5.582269 GCTGCAGTGTGATAAGAATACTGAA 59.418 40.000 16.64 0.00 40.80 3.02
2549 3391 5.105187 AGCTGCAGTGTGATAAGAATACTGA 60.105 40.000 16.64 0.00 40.80 3.41
2550 3392 5.114780 AGCTGCAGTGTGATAAGAATACTG 58.885 41.667 16.64 0.00 41.15 2.74
2551 3393 5.350504 AGCTGCAGTGTGATAAGAATACT 57.649 39.130 16.64 0.00 0.00 2.12
2552 3394 6.758886 ACTTAGCTGCAGTGTGATAAGAATAC 59.241 38.462 16.64 0.00 0.00 1.89
2553 3395 6.758416 CACTTAGCTGCAGTGTGATAAGAATA 59.242 38.462 16.64 0.00 37.47 1.75
2554 3396 5.583854 CACTTAGCTGCAGTGTGATAAGAAT 59.416 40.000 16.64 5.84 37.47 2.40
2555 3397 4.931601 CACTTAGCTGCAGTGTGATAAGAA 59.068 41.667 16.64 0.00 37.47 2.52
2556 3398 4.498241 CACTTAGCTGCAGTGTGATAAGA 58.502 43.478 16.64 0.00 37.47 2.10
2557 3399 3.063180 GCACTTAGCTGCAGTGTGATAAG 59.937 47.826 24.33 20.20 43.21 1.73
2558 3400 3.002791 GCACTTAGCTGCAGTGTGATAA 58.997 45.455 24.33 12.98 43.21 1.75
2559 3401 2.028203 TGCACTTAGCTGCAGTGTGATA 60.028 45.455 24.33 14.66 42.36 2.15
2560 3402 1.271001 TGCACTTAGCTGCAGTGTGAT 60.271 47.619 24.33 8.43 42.36 3.06
2561 3403 0.106521 TGCACTTAGCTGCAGTGTGA 59.893 50.000 24.33 11.46 42.36 3.58
2562 3404 2.620562 TGCACTTAGCTGCAGTGTG 58.379 52.632 22.30 18.37 42.36 3.82
2567 3409 1.344438 ACTGTAGTGCACTTAGCTGCA 59.656 47.619 27.06 9.20 45.06 4.41
2568 3410 1.728971 CACTGTAGTGCACTTAGCTGC 59.271 52.381 27.06 4.23 45.94 5.25
2569 3411 2.289072 ACCACTGTAGTGCACTTAGCTG 60.289 50.000 27.06 19.66 44.34 4.24
2570 3412 1.971357 ACCACTGTAGTGCACTTAGCT 59.029 47.619 27.06 11.34 44.34 3.32
2571 3413 2.457366 ACCACTGTAGTGCACTTAGC 57.543 50.000 27.06 15.85 44.34 3.09
2572 3414 4.235360 GTGTACCACTGTAGTGCACTTAG 58.765 47.826 27.06 24.03 44.45 2.18
2573 3415 4.247267 GTGTACCACTGTAGTGCACTTA 57.753 45.455 27.06 13.78 44.45 2.24
2574 3416 3.107642 GTGTACCACTGTAGTGCACTT 57.892 47.619 27.06 7.50 44.45 3.16
2575 3417 2.814280 GTGTACCACTGTAGTGCACT 57.186 50.000 25.12 25.12 44.45 4.40
2577 3419 4.940905 TTTAGTGTACCACTGTAGTGCA 57.059 40.909 6.50 0.00 45.01 4.57
2578 3420 4.092968 GCATTTAGTGTACCACTGTAGTGC 59.907 45.833 6.50 9.24 45.01 4.40
2579 3421 5.348724 CAGCATTTAGTGTACCACTGTAGTG 59.651 44.000 7.13 5.05 45.01 2.74
2580 3422 5.479306 CAGCATTTAGTGTACCACTGTAGT 58.521 41.667 7.13 0.00 45.01 2.73
2581 3423 4.330074 GCAGCATTTAGTGTACCACTGTAG 59.670 45.833 7.13 0.00 45.01 2.74
2582 3424 4.250464 GCAGCATTTAGTGTACCACTGTA 58.750 43.478 7.13 0.00 45.01 2.74
2583 3425 3.074412 GCAGCATTTAGTGTACCACTGT 58.926 45.455 7.13 0.00 45.01 3.55
2584 3426 2.094258 CGCAGCATTTAGTGTACCACTG 59.906 50.000 7.13 0.00 45.01 3.66
2586 3428 2.073816 ACGCAGCATTTAGTGTACCAC 58.926 47.619 0.00 0.00 34.10 4.16
2587 3429 2.465860 ACGCAGCATTTAGTGTACCA 57.534 45.000 0.00 0.00 0.00 3.25
2588 3430 3.930848 AGTTACGCAGCATTTAGTGTACC 59.069 43.478 0.00 0.00 31.15 3.34
2589 3431 4.724036 GCAGTTACGCAGCATTTAGTGTAC 60.724 45.833 0.00 0.00 31.15 2.90
2590 3432 3.369756 GCAGTTACGCAGCATTTAGTGTA 59.630 43.478 0.00 0.00 0.00 2.90
2591 3433 2.159627 GCAGTTACGCAGCATTTAGTGT 59.840 45.455 0.00 0.00 0.00 3.55
2592 3434 2.159430 TGCAGTTACGCAGCATTTAGTG 59.841 45.455 0.00 0.00 36.86 2.74
2593 3435 2.422597 TGCAGTTACGCAGCATTTAGT 58.577 42.857 0.00 0.00 36.86 2.24
2594 3436 3.163594 GTTGCAGTTACGCAGCATTTAG 58.836 45.455 9.89 0.00 44.14 1.85
2595 3437 2.095466 GGTTGCAGTTACGCAGCATTTA 60.095 45.455 14.56 0.00 44.11 1.40
2596 3438 1.335872 GGTTGCAGTTACGCAGCATTT 60.336 47.619 14.56 0.00 44.11 2.32
2597 3439 0.240945 GGTTGCAGTTACGCAGCATT 59.759 50.000 14.56 0.00 44.11 3.56
2598 3440 0.606401 AGGTTGCAGTTACGCAGCAT 60.606 50.000 14.56 7.54 44.11 3.79
2599 3441 0.034198 TAGGTTGCAGTTACGCAGCA 59.966 50.000 14.56 7.09 44.11 4.41
2600 3442 0.442699 GTAGGTTGCAGTTACGCAGC 59.557 55.000 7.26 7.26 44.14 5.25
2601 3443 1.076332 GGTAGGTTGCAGTTACGCAG 58.924 55.000 2.75 0.00 44.14 5.18
2602 3444 0.393448 TGGTAGGTTGCAGTTACGCA 59.607 50.000 0.00 0.00 41.03 5.24
2603 3445 0.794473 GTGGTAGGTTGCAGTTACGC 59.206 55.000 0.00 0.00 0.00 4.42
2604 3446 1.796459 GTGTGGTAGGTTGCAGTTACG 59.204 52.381 0.00 0.00 0.00 3.18
2605 3447 2.841215 TGTGTGGTAGGTTGCAGTTAC 58.159 47.619 0.00 0.00 0.00 2.50
2606 3448 3.472652 CTTGTGTGGTAGGTTGCAGTTA 58.527 45.455 0.00 0.00 0.00 2.24
2607 3449 2.297701 CTTGTGTGGTAGGTTGCAGTT 58.702 47.619 0.00 0.00 0.00 3.16
2608 3450 1.476833 CCTTGTGTGGTAGGTTGCAGT 60.477 52.381 0.00 0.00 0.00 4.40
2609 3451 1.202758 TCCTTGTGTGGTAGGTTGCAG 60.203 52.381 0.00 0.00 33.15 4.41
2610 3452 0.840617 TCCTTGTGTGGTAGGTTGCA 59.159 50.000 0.00 0.00 33.15 4.08
2611 3453 1.975660 TTCCTTGTGTGGTAGGTTGC 58.024 50.000 0.00 0.00 33.15 4.17
2612 3454 4.261994 CCATTTTCCTTGTGTGGTAGGTTG 60.262 45.833 0.00 0.00 33.15 3.77
2613 3455 3.895041 CCATTTTCCTTGTGTGGTAGGTT 59.105 43.478 0.00 0.00 33.15 3.50
2614 3456 3.139397 TCCATTTTCCTTGTGTGGTAGGT 59.861 43.478 0.00 0.00 33.15 3.08
2615 3457 3.761897 TCCATTTTCCTTGTGTGGTAGG 58.238 45.455 0.00 0.00 0.00 3.18
2616 3458 5.782893 TTTCCATTTTCCTTGTGTGGTAG 57.217 39.130 0.00 0.00 0.00 3.18
2617 3459 6.463614 CCAATTTCCATTTTCCTTGTGTGGTA 60.464 38.462 0.00 0.00 0.00 3.25
2618 3460 5.367302 CAATTTCCATTTTCCTTGTGTGGT 58.633 37.500 0.00 0.00 0.00 4.16
2619 3461 4.756135 CCAATTTCCATTTTCCTTGTGTGG 59.244 41.667 0.00 0.00 0.00 4.17
2728 3570 2.093890 TGCACGATTGGAATTGCTCAT 58.906 42.857 0.00 0.00 35.91 2.90
3200 4042 0.179161 CAGCAGCAATCTTGAGCAGC 60.179 55.000 0.00 0.00 42.67 5.25
3771 4853 7.879677 TCCTCATGGAATATACAGCTTAACATG 59.120 37.037 0.00 0.00 39.87 3.21
3883 4966 3.476552 TCAGGAATCAAGCGAGTTGTTT 58.523 40.909 0.00 0.00 37.43 2.83
4047 5130 3.697045 CTCCCTCCGATCCATATAGACAC 59.303 52.174 0.00 0.00 0.00 3.67
4048 5131 3.333980 ACTCCCTCCGATCCATATAGACA 59.666 47.826 0.00 0.00 0.00 3.41
4049 5132 3.970842 ACTCCCTCCGATCCATATAGAC 58.029 50.000 0.00 0.00 0.00 2.59
4050 5133 5.014860 TGTTACTCCCTCCGATCCATATAGA 59.985 44.000 0.00 0.00 0.00 1.98
4051 5134 5.125739 GTGTTACTCCCTCCGATCCATATAG 59.874 48.000 0.00 0.00 0.00 1.31
4529 5777 6.828273 ACAATTTGAGTGTGGCTAATAGCATA 59.172 34.615 14.76 0.00 44.75 3.14
4897 6150 9.453572 TTCACAGTTCAATAGCTCATCTTATTT 57.546 29.630 0.00 0.00 0.00 1.40
4993 6246 0.664761 GCAGCAGTTGTGAGCTTGAA 59.335 50.000 0.00 0.00 39.50 2.69
5662 7266 5.048083 ACAAACTACACAACAGCCCAATATG 60.048 40.000 0.00 0.00 0.00 1.78
5842 7555 8.610896 GTGATGCTTATCATAAGATCATTAGCC 58.389 37.037 8.74 0.53 35.05 3.93
5945 7658 5.704515 CAGAGATGAGGTGACAAACTTGAAT 59.295 40.000 0.00 0.00 0.00 2.57
5986 7699 3.285290 TCTTTAGAGGAAGGGGGTGAA 57.715 47.619 0.00 0.00 0.00 3.18
6090 11141 4.219033 CACCTCGTATGTTTTTGAAGTGC 58.781 43.478 0.00 0.00 0.00 4.40
6173 11224 4.518970 GGGCATTGTTCTACTGACTCAAAA 59.481 41.667 0.00 0.00 0.00 2.44
6174 11225 4.072131 GGGCATTGTTCTACTGACTCAAA 58.928 43.478 0.00 0.00 0.00 2.69
6175 11226 3.674997 GGGCATTGTTCTACTGACTCAA 58.325 45.455 0.00 0.00 0.00 3.02
6176 11227 2.353704 CGGGCATTGTTCTACTGACTCA 60.354 50.000 0.00 0.00 0.00 3.41
6177 11228 2.271800 CGGGCATTGTTCTACTGACTC 58.728 52.381 0.00 0.00 0.00 3.36
6178 11229 1.623811 ACGGGCATTGTTCTACTGACT 59.376 47.619 0.00 0.00 0.00 3.41
6179 11230 1.732259 CACGGGCATTGTTCTACTGAC 59.268 52.381 0.00 0.00 0.00 3.51
6180 11231 1.943968 GCACGGGCATTGTTCTACTGA 60.944 52.381 3.77 0.00 40.72 3.41
6181 11232 0.447801 GCACGGGCATTGTTCTACTG 59.552 55.000 3.77 0.00 40.72 2.74
6182 11233 1.019278 CGCACGGGCATTGTTCTACT 61.019 55.000 11.77 0.00 41.24 2.57
6183 11234 1.296056 ACGCACGGGCATTGTTCTAC 61.296 55.000 11.77 0.00 41.24 2.59
6184 11235 0.604243 AACGCACGGGCATTGTTCTA 60.604 50.000 11.77 0.00 41.24 2.10
6185 11236 1.896660 AACGCACGGGCATTGTTCT 60.897 52.632 11.77 0.00 41.24 3.01
6186 11237 1.729131 CAACGCACGGGCATTGTTC 60.729 57.895 10.90 0.00 38.34 3.18
6187 11238 2.334653 CAACGCACGGGCATTGTT 59.665 55.556 10.90 2.50 38.34 2.83
6188 11239 4.341502 GCAACGCACGGGCATTGT 62.342 61.111 20.63 0.74 44.58 2.71
6189 11240 3.837908 TTGCAACGCACGGGCATTG 62.838 57.895 15.24 15.24 45.48 2.82
6190 11241 3.600694 TTGCAACGCACGGGCATT 61.601 55.556 11.77 0.00 38.71 3.56
6191 11242 4.341502 GTTGCAACGCACGGGCAT 62.342 61.111 14.90 0.00 38.71 4.40
6201 11252 9.216117 AGTAGAATATTTATATCCCGTTGCAAC 57.784 33.333 19.89 19.89 0.00 4.17
6203 11254 9.865321 GTAGTAGAATATTTATATCCCGTTGCA 57.135 33.333 0.00 0.00 0.00 4.08
6204 11255 9.017669 CGTAGTAGAATATTTATATCCCGTTGC 57.982 37.037 0.00 0.00 0.00 4.17
6214 11265 9.823098 CACGAGCTAACGTAGTAGAATATTTAT 57.177 33.333 0.00 0.00 45.00 1.40
6215 11266 9.045223 TCACGAGCTAACGTAGTAGAATATTTA 57.955 33.333 0.00 0.00 45.00 1.40
6216 11267 7.923888 TCACGAGCTAACGTAGTAGAATATTT 58.076 34.615 0.00 0.00 45.00 1.40
6217 11268 7.488187 TCACGAGCTAACGTAGTAGAATATT 57.512 36.000 0.00 0.00 45.00 1.28
6218 11269 7.670009 ATCACGAGCTAACGTAGTAGAATAT 57.330 36.000 0.00 0.00 45.00 1.28
6219 11270 7.488187 AATCACGAGCTAACGTAGTAGAATA 57.512 36.000 0.00 0.00 45.00 1.75
6220 11271 6.374565 AATCACGAGCTAACGTAGTAGAAT 57.625 37.500 0.00 0.00 45.00 2.40
6221 11272 5.808042 AATCACGAGCTAACGTAGTAGAA 57.192 39.130 0.00 0.00 45.00 2.10
6222 11273 5.808042 AAATCACGAGCTAACGTAGTAGA 57.192 39.130 0.00 0.00 45.00 2.59
6223 11274 5.906285 GGTAAATCACGAGCTAACGTAGTAG 59.094 44.000 0.00 0.00 45.00 2.57
6230 11281 4.491676 TGACAGGTAAATCACGAGCTAAC 58.508 43.478 0.00 0.00 0.00 2.34
6232 11283 4.794278 TTGACAGGTAAATCACGAGCTA 57.206 40.909 0.00 0.00 0.00 3.32
6233 11284 3.678056 TTGACAGGTAAATCACGAGCT 57.322 42.857 0.00 0.00 0.00 4.09
6236 11287 8.556194 GCATTATTATTGACAGGTAAATCACGA 58.444 33.333 0.00 0.00 0.00 4.35
6239 11290 8.669946 TCGCATTATTATTGACAGGTAAATCA 57.330 30.769 0.00 0.00 0.00 2.57
6247 11298 9.715123 TTTACACAATCGCATTATTATTGACAG 57.285 29.630 0.00 0.00 35.18 3.51
6259 11310 9.236691 GATGAACATTTATTTACACAATCGCAT 57.763 29.630 0.00 0.00 0.00 4.73
6260 11311 8.239998 TGATGAACATTTATTTACACAATCGCA 58.760 29.630 0.00 0.00 0.00 5.10
6270 11321 9.299963 CGGCAGAATTTGATGAACATTTATTTA 57.700 29.630 0.00 0.00 0.00 1.40
6271 11322 7.278424 CCGGCAGAATTTGATGAACATTTATTT 59.722 33.333 0.00 0.00 0.00 1.40
6273 11324 6.127366 ACCGGCAGAATTTGATGAACATTTAT 60.127 34.615 0.00 0.00 0.00 1.40
6274 11325 5.184864 ACCGGCAGAATTTGATGAACATTTA 59.815 36.000 0.00 0.00 0.00 1.40
6275 11326 4.021192 ACCGGCAGAATTTGATGAACATTT 60.021 37.500 0.00 0.00 0.00 2.32
6277 11328 3.091545 ACCGGCAGAATTTGATGAACAT 58.908 40.909 0.00 0.00 0.00 2.71
6279 11330 2.487762 TCACCGGCAGAATTTGATGAAC 59.512 45.455 0.00 0.00 0.00 3.18
6282 11333 3.788333 ATTCACCGGCAGAATTTGATG 57.212 42.857 14.99 0.00 31.99 3.07
6283 11334 4.097892 GGTAATTCACCGGCAGAATTTGAT 59.902 41.667 29.33 15.27 41.54 2.57
6285 11336 3.769536 GGTAATTCACCGGCAGAATTTG 58.230 45.455 29.33 9.72 41.54 2.32
6304 11355 9.143155 ACCAAACTTCTAATCAAAATACAAGGT 57.857 29.630 0.00 0.00 0.00 3.50
6347 11398 9.856162 TTAAGTTACTTACCTTCTGAACCAATT 57.144 29.630 4.09 0.00 0.00 2.32
6348 11399 9.503399 CTTAAGTTACTTACCTTCTGAACCAAT 57.497 33.333 4.09 0.00 0.00 3.16
6349 11400 8.707449 TCTTAAGTTACTTACCTTCTGAACCAA 58.293 33.333 4.09 0.00 0.00 3.67
6350 11401 8.253867 TCTTAAGTTACTTACCTTCTGAACCA 57.746 34.615 4.09 0.00 0.00 3.67
6351 11402 9.152595 CATCTTAAGTTACTTACCTTCTGAACC 57.847 37.037 4.09 0.00 0.00 3.62
6382 11433 9.605275 CGTCCAATCTTCCATGTATATGATAAT 57.395 33.333 0.25 0.00 36.36 1.28
6384 11435 8.361169 TCGTCCAATCTTCCATGTATATGATA 57.639 34.615 0.25 0.00 36.36 2.15
6385 11436 7.244886 TCGTCCAATCTTCCATGTATATGAT 57.755 36.000 0.25 0.00 36.36 2.45
6386 11437 6.664428 TCGTCCAATCTTCCATGTATATGA 57.336 37.500 0.25 0.00 36.36 2.15
6387 11438 6.369890 CCTTCGTCCAATCTTCCATGTATATG 59.630 42.308 0.00 0.00 0.00 1.78
6388 11439 6.467677 CCTTCGTCCAATCTTCCATGTATAT 58.532 40.000 0.00 0.00 0.00 0.86
6389 11440 5.221641 CCCTTCGTCCAATCTTCCATGTATA 60.222 44.000 0.00 0.00 0.00 1.47
6390 11441 4.444876 CCCTTCGTCCAATCTTCCATGTAT 60.445 45.833 0.00 0.00 0.00 2.29
6391 11442 3.118408 CCCTTCGTCCAATCTTCCATGTA 60.118 47.826 0.00 0.00 0.00 2.29
6392 11443 2.356125 CCCTTCGTCCAATCTTCCATGT 60.356 50.000 0.00 0.00 0.00 3.21
6394 11445 1.212935 CCCCTTCGTCCAATCTTCCAT 59.787 52.381 0.00 0.00 0.00 3.41
6395 11446 0.618458 CCCCTTCGTCCAATCTTCCA 59.382 55.000 0.00 0.00 0.00 3.53
6396 11447 0.618981 ACCCCTTCGTCCAATCTTCC 59.381 55.000 0.00 0.00 0.00 3.46
6397 11448 1.679032 CCACCCCTTCGTCCAATCTTC 60.679 57.143 0.00 0.00 0.00 2.87
6399 11450 0.840722 ACCACCCCTTCGTCCAATCT 60.841 55.000 0.00 0.00 0.00 2.40
6400 11451 0.676782 CACCACCCCTTCGTCCAATC 60.677 60.000 0.00 0.00 0.00 2.67
6401 11452 1.378762 CACCACCCCTTCGTCCAAT 59.621 57.895 0.00 0.00 0.00 3.16
6402 11453 2.824880 CCACCACCCCTTCGTCCAA 61.825 63.158 0.00 0.00 0.00 3.53
6404 11455 2.059345 TTTCCACCACCCCTTCGTCC 62.059 60.000 0.00 0.00 0.00 4.79
6405 11456 0.605589 CTTTCCACCACCCCTTCGTC 60.606 60.000 0.00 0.00 0.00 4.20
6406 11457 1.057851 TCTTTCCACCACCCCTTCGT 61.058 55.000 0.00 0.00 0.00 3.85
6407 11458 0.109723 TTCTTTCCACCACCCCTTCG 59.890 55.000 0.00 0.00 0.00 3.79
6408 11459 2.239400 CTTTCTTTCCACCACCCCTTC 58.761 52.381 0.00 0.00 0.00 3.46
6409 11460 1.133167 CCTTTCTTTCCACCACCCCTT 60.133 52.381 0.00 0.00 0.00 3.95
6410 11461 0.482887 CCTTTCTTTCCACCACCCCT 59.517 55.000 0.00 0.00 0.00 4.79
6411 11462 0.187606 ACCTTTCTTTCCACCACCCC 59.812 55.000 0.00 0.00 0.00 4.95
6412 11463 1.133606 TCACCTTTCTTTCCACCACCC 60.134 52.381 0.00 0.00 0.00 4.61
6413 11464 2.358322 TCACCTTTCTTTCCACCACC 57.642 50.000 0.00 0.00 0.00 4.61
6415 11466 3.640967 CCATTTCACCTTTCTTTCCACCA 59.359 43.478 0.00 0.00 0.00 4.17
6416 11467 3.006859 CCCATTTCACCTTTCTTTCCACC 59.993 47.826 0.00 0.00 0.00 4.61
6418 11469 4.191804 TCCCATTTCACCTTTCTTTCCA 57.808 40.909 0.00 0.00 0.00 3.53
6419 11470 4.262463 GGTTCCCATTTCACCTTTCTTTCC 60.262 45.833 0.00 0.00 0.00 3.13
6420 11471 4.588951 AGGTTCCCATTTCACCTTTCTTTC 59.411 41.667 0.00 0.00 37.70 2.62
6422 11473 4.199002 AGGTTCCCATTTCACCTTTCTT 57.801 40.909 0.00 0.00 37.70 2.52
6423 11474 3.903530 AGGTTCCCATTTCACCTTTCT 57.096 42.857 0.00 0.00 37.70 2.52
6424 11475 4.082949 CGTAAGGTTCCCATTTCACCTTTC 60.083 45.833 8.08 2.95 46.85 2.62
6425 11476 3.824443 CGTAAGGTTCCCATTTCACCTTT 59.176 43.478 8.08 0.00 46.85 3.11
6428 11479 2.786777 ACGTAAGGTTCCCATTTCACC 58.213 47.619 0.00 0.00 46.39 4.02
7099 12244 1.536496 GCACAACAACATCAAGCTGCA 60.536 47.619 1.02 0.00 0.00 4.41
7100 12245 1.134226 GCACAACAACATCAAGCTGC 58.866 50.000 0.00 0.00 0.00 5.25
7136 12281 3.470709 CAGAGAAAGCAACAGGTTGAGA 58.529 45.455 15.88 0.00 42.93 3.27
7392 12540 6.762702 TCATAGAGTCGTATGTAAACCACA 57.237 37.500 8.51 0.00 42.69 4.17
7468 12633 3.877508 CCGTAATGTCTTCTCCATTTCCC 59.122 47.826 0.00 0.00 34.51 3.97
7691 12997 8.827832 AAAAGATCATTCTTCAATATCCCACA 57.172 30.769 0.00 0.00 41.42 4.17
8538 13859 5.241403 AGGGAAACACAATATGACACAGA 57.759 39.130 0.00 0.00 0.00 3.41
8560 13886 3.133542 ACAGATGCTGCTATGTTGCTCTA 59.866 43.478 0.00 0.00 34.37 2.43
8633 13961 2.039624 GGTCAGGCCTCTCCAGGA 59.960 66.667 0.00 0.00 43.65 3.86
8654 13982 3.458653 CACCTTTTGCCCTGGTGG 58.541 61.111 0.00 0.00 45.29 4.61
8662 13990 3.383761 CAGATGAAACCACACCTTTTGC 58.616 45.455 0.00 0.00 0.00 3.68
8686 14014 2.300152 TCGGAAGATGAGTTTCTGCTGT 59.700 45.455 0.00 0.00 30.60 4.40
8717 14045 1.303309 GGATTCAGAACCATGGAGCG 58.697 55.000 21.47 3.71 0.00 5.03
8795 14123 2.037121 TCGTCTGATCCTGAAGTTGCAA 59.963 45.455 0.00 0.00 0.00 4.08
8796 14124 1.618343 TCGTCTGATCCTGAAGTTGCA 59.382 47.619 0.00 0.00 0.00 4.08
8830 14158 2.289547 TGAAACTGAGTTTGCCTTACGC 59.710 45.455 16.25 0.00 35.77 4.42
8831 14159 4.213270 TGATGAAACTGAGTTTGCCTTACG 59.787 41.667 16.25 0.00 35.77 3.18
8832 14160 5.689383 TGATGAAACTGAGTTTGCCTTAC 57.311 39.130 16.25 0.20 35.77 2.34
8884 14251 6.070366 GGGTGTAGTAGTCCAAATTTAGGAGT 60.070 42.308 16.33 16.33 41.57 3.85
9128 14511 2.552743 GAGGGTTTTGTTAGCTCCACAC 59.447 50.000 0.00 0.00 0.00 3.82
9131 14514 2.173782 TGTGAGGGTTTTGTTAGCTCCA 59.826 45.455 0.00 0.00 0.00 3.86
9132 14515 2.552743 GTGTGAGGGTTTTGTTAGCTCC 59.447 50.000 0.00 0.00 0.00 4.70
9150 14534 2.319136 TAGTTTGGTTCGCTGTGTGT 57.681 45.000 0.00 0.00 0.00 3.72
9158 14542 4.640201 ACCATCCAATCATAGTTTGGTTCG 59.360 41.667 6.71 0.00 43.41 3.95
9169 14553 7.456725 CACTATCCTTCTAACCATCCAATCAT 58.543 38.462 0.00 0.00 0.00 2.45
9172 14556 5.672194 ACCACTATCCTTCTAACCATCCAAT 59.328 40.000 0.00 0.00 0.00 3.16
9195 14579 1.282157 ACTCTGTTGGGCTTGGGATAC 59.718 52.381 0.00 0.00 0.00 2.24
9200 14584 1.242076 CTGAACTCTGTTGGGCTTGG 58.758 55.000 0.00 0.00 0.00 3.61
9201 14585 1.242076 CCTGAACTCTGTTGGGCTTG 58.758 55.000 0.00 0.00 0.00 4.01
9202 14586 0.846693 ACCTGAACTCTGTTGGGCTT 59.153 50.000 0.00 0.00 0.00 4.35
9205 14589 1.059913 AGGACCTGAACTCTGTTGGG 58.940 55.000 0.00 0.00 0.00 4.12
9206 14590 2.900546 ACTAGGACCTGAACTCTGTTGG 59.099 50.000 3.53 0.00 0.00 3.77
9260 14656 2.809174 CTGAACGCACATCGCCGA 60.809 61.111 0.00 0.00 43.23 5.54
9284 14680 2.620115 TCGTAGTCAACTGGAACGTCTT 59.380 45.455 0.00 0.00 35.21 3.01
9287 14683 1.952296 AGTCGTAGTCAACTGGAACGT 59.048 47.619 4.44 0.00 35.21 3.99
9294 14690 3.998341 GAGAGACTGAGTCGTAGTCAACT 59.002 47.826 6.99 10.19 45.41 3.16
9333 14772 3.467119 CACGCACGCACGTCCTAC 61.467 66.667 0.00 0.00 46.34 3.18
9339 14778 2.290216 TATGAATGCACGCACGCACG 62.290 55.000 0.00 0.00 46.56 5.34
9357 14796 1.834896 ACGCACATACATTCACCCCTA 59.165 47.619 0.00 0.00 0.00 3.53
9359 14798 2.319136 TACGCACATACATTCACCCC 57.681 50.000 0.00 0.00 0.00 4.95
9376 14815 4.271049 ACAGACGCAAATGCTCATACATAC 59.729 41.667 3.63 0.00 39.32 2.39
9383 14822 2.068519 CAGTACAGACGCAAATGCTCA 58.931 47.619 3.63 0.00 39.32 4.26
9446 14887 4.101119 ACGTGGAAGAAAGAAGGAAGAGAA 59.899 41.667 0.00 0.00 0.00 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.