Multiple sequence alignment - TraesCS3D01G375500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G375500 chr3D 100.000 4361 0 0 1 4361 488876486 488872126 0.000000e+00 8054.0
1 TraesCS3D01G375500 chr3D 85.331 1418 164 15 2309 3702 488889889 488888492 0.000000e+00 1426.0
2 TraesCS3D01G375500 chr3D 83.515 643 97 8 3030 3669 488894491 488893855 4.070000e-165 592.0
3 TraesCS3D01G375500 chr3D 83.170 612 65 27 829 1417 488891598 488891002 4.190000e-145 525.0
4 TraesCS3D01G375500 chr3D 100.000 117 0 0 4607 4723 488871880 488871764 2.860000e-52 217.0
5 TraesCS3D01G375500 chr3D 100.000 30 0 0 1902 1931 265978541 265978512 6.600000e-04 56.5
6 TraesCS3D01G375500 chr3D 100.000 29 0 0 1873 1901 287456007 287456035 2.000000e-03 54.7
7 TraesCS3D01G375500 chr3A 94.533 1573 69 8 2336 3897 632372394 632373960 0.000000e+00 2412.0
8 TraesCS3D01G375500 chr3A 84.355 1419 175 22 2309 3702 632296480 632297876 0.000000e+00 1347.0
9 TraesCS3D01G375500 chr3A 91.450 538 25 6 64 582 632368408 632368943 0.000000e+00 719.0
10 TraesCS3D01G375500 chr3A 89.454 531 21 16 578 1103 632369030 632369530 5.150000e-179 638.0
11 TraesCS3D01G375500 chr3A 83.151 641 101 6 3030 3668 632294672 632295307 3.170000e-161 579.0
12 TraesCS3D01G375500 chr3A 93.668 379 16 2 1102 1476 632369560 632369934 1.150000e-155 560.0
13 TraesCS3D01G375500 chr3A 82.178 606 64 30 829 1411 632295464 632296048 9.190000e-132 481.0
14 TraesCS3D01G375500 chr3A 93.651 63 3 1 3898 3959 632374021 632374083 5.030000e-15 93.5
15 TraesCS3D01G375500 chr3B 84.099 1415 184 14 2309 3702 651568680 651570074 0.000000e+00 1328.0
16 TraesCS3D01G375500 chr3B 83.994 1387 178 18 2329 3696 651533395 651534756 0.000000e+00 1291.0
17 TraesCS3D01G375500 chr3B 83.696 644 94 9 3030 3669 651566805 651567441 8.750000e-167 597.0
18 TraesCS3D01G375500 chr3B 87.402 508 42 15 914 1409 651567654 651568151 8.870000e-157 564.0
19 TraesCS3D01G375500 chr3B 81.722 662 110 9 3030 3687 651507505 651508159 4.160000e-150 542.0
20 TraesCS3D01G375500 chr3B 93.165 278 19 0 1140 1417 651524139 651524416 4.400000e-110 409.0
21 TraesCS3D01G375500 chr3B 83.886 211 19 12 898 1097 651508352 651508558 2.240000e-43 187.0
22 TraesCS3D01G375500 chr5D 97.199 357 10 0 3960 4316 7032125 7032481 5.230000e-169 604.0
23 TraesCS3D01G375500 chr5D 99.123 114 1 0 4607 4720 7032597 7032710 6.200000e-49 206.0
24 TraesCS3D01G375500 chr5D 94.595 37 2 0 1900 1936 129886399 129886363 1.840000e-04 58.4
25 TraesCS3D01G375500 chr1D 97.199 357 10 0 3960 4316 481958011 481957655 5.230000e-169 604.0
26 TraesCS3D01G375500 chr1D 97.436 117 3 0 4607 4723 481957539 481957423 2.880000e-47 200.0
27 TraesCS3D01G375500 chr1D 97.368 114 3 0 4607 4720 483047993 483048106 1.340000e-45 195.0
28 TraesCS3D01G375500 chr1D 89.024 82 2 6 4287 4361 481957651 481957570 1.400000e-15 95.3
29 TraesCS3D01G375500 chr7B 95.845 361 14 1 3957 4316 648110901 648110541 2.450000e-162 582.0
30 TraesCS3D01G375500 chr7B 94.398 357 20 0 3960 4316 622522444 622522800 2.480000e-152 549.0
31 TraesCS3D01G375500 chr7B 96.970 33 1 0 1902 1934 465162290 465162322 6.600000e-04 56.5
32 TraesCS3D01G375500 chr5B 95.225 356 16 1 3961 4316 537903839 537903485 3.190000e-156 562.0
33 TraesCS3D01G375500 chr1A 94.693 358 18 1 3959 4316 548463387 548463743 5.340000e-154 555.0
34 TraesCS3D01G375500 chr1A 100.000 29 0 0 1902 1930 286126441 286126413 2.000000e-03 54.7
35 TraesCS3D01G375500 chr1B 94.398 357 20 0 3959 4315 66925243 66925599 2.480000e-152 549.0
36 TraesCS3D01G375500 chr1B 94.737 114 5 1 4607 4720 54130177 54130289 4.860000e-40 176.0
37 TraesCS3D01G375500 chr1B 96.154 52 1 1 4311 4361 54130095 54130146 3.030000e-12 84.2
38 TraesCS3D01G375500 chr1B 94.231 52 2 1 4311 4361 449735698 449735647 1.410000e-10 78.7
39 TraesCS3D01G375500 chr1B 94.595 37 1 1 1898 1934 670040953 670040918 6.600000e-04 56.5
40 TraesCS3D01G375500 chr6D 94.350 354 19 1 3960 4313 83156663 83157015 4.160000e-150 542.0
41 TraesCS3D01G375500 chr6D 94.872 117 6 0 4607 4723 15379571 15379455 2.900000e-42 183.0
42 TraesCS3D01G375500 chr6D 98.000 50 0 1 4313 4361 15379651 15379602 8.420000e-13 86.1
43 TraesCS3D01G375500 chr6D 100.000 29 0 0 1902 1930 103456061 103456089 2.000000e-03 54.7
44 TraesCS3D01G375500 chr6D 100.000 29 0 0 1902 1930 168790048 168790076 2.000000e-03 54.7
45 TraesCS3D01G375500 chr4B 94.118 357 20 1 3960 4316 139542111 139542466 4.160000e-150 542.0
46 TraesCS3D01G375500 chr7D 94.872 117 6 0 4607 4723 440004040 440003924 2.900000e-42 183.0
47 TraesCS3D01G375500 chr7D 94.017 117 7 0 4607 4723 28853455 28853339 1.350000e-40 178.0
48 TraesCS3D01G375500 chr7D 98.077 52 0 1 4311 4361 440004122 440004071 6.510000e-14 89.8
49 TraesCS3D01G375500 chr7D 94.231 52 2 1 4311 4361 28853537 28853486 1.410000e-10 78.7
50 TraesCS3D01G375500 chrUn 94.737 114 5 1 4607 4720 34133665 34133777 4.860000e-40 176.0
51 TraesCS3D01G375500 chr7A 93.860 114 7 0 4607 4720 708600925 708600812 6.280000e-39 172.0
52 TraesCS3D01G375500 chr7A 94.231 52 2 1 4311 4361 708601007 708600956 1.410000e-10 78.7
53 TraesCS3D01G375500 chr2A 75.524 286 61 8 3347 3627 765053276 765052995 1.070000e-26 132.0
54 TraesCS3D01G375500 chr4D 98.077 52 0 1 4311 4361 274469226 274469175 6.510000e-14 89.8
55 TraesCS3D01G375500 chr6B 96.970 33 0 1 1898 1930 347928957 347928926 2.000000e-03 54.7
56 TraesCS3D01G375500 chr6A 94.286 35 2 0 1902 1936 279138890 279138856 2.000000e-03 54.7
57 TraesCS3D01G375500 chr5A 100.000 28 0 0 1235 1262 2403882 2403855 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G375500 chr3D 488871764 488876486 4722 True 4135.500000 8054 100.000000 1 4723 2 chr3D.!!$R2 4722
1 TraesCS3D01G375500 chr3D 488888492 488894491 5999 True 847.666667 1426 84.005333 829 3702 3 chr3D.!!$R3 2873
2 TraesCS3D01G375500 chr3A 632368408 632374083 5675 False 884.500000 2412 92.551200 64 3959 5 chr3A.!!$F2 3895
3 TraesCS3D01G375500 chr3A 632294672 632297876 3204 False 802.333333 1347 83.228000 829 3702 3 chr3A.!!$F1 2873
4 TraesCS3D01G375500 chr3B 651533395 651534756 1361 False 1291.000000 1291 83.994000 2329 3696 1 chr3B.!!$F2 1367
5 TraesCS3D01G375500 chr3B 651566805 651570074 3269 False 829.666667 1328 85.065667 914 3702 3 chr3B.!!$F4 2788
6 TraesCS3D01G375500 chr3B 651507505 651508558 1053 False 364.500000 542 82.804000 898 3687 2 chr3B.!!$F3 2789
7 TraesCS3D01G375500 chr5D 7032125 7032710 585 False 405.000000 604 98.161000 3960 4720 2 chr5D.!!$F1 760
8 TraesCS3D01G375500 chr1D 481957423 481958011 588 True 299.766667 604 94.553000 3960 4723 3 chr1D.!!$R1 763

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
29 30 0.034574 TGGTTCGCATTGGCTATGGT 60.035 50.0 10.82 0.00 38.10 3.55 F
907 926 0.035458 AATATACCGCCCAGAGCAGC 59.965 55.0 0.00 0.00 44.04 5.25 F
1726 4073 0.248661 CGATGCGTACTGCTGCTAGT 60.249 55.0 0.00 5.63 46.63 2.57 F
1897 5202 0.032017 AGCTACTCCCTCCGTTCCAT 60.032 55.0 0.00 0.00 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1707 4054 0.248661 ACTAGCAGCAGTACGCATCG 60.249 55.000 11.30 2.34 46.13 3.84 R
1877 5182 0.683504 TGGAACGGAGGGAGTAGCTC 60.684 60.000 0.00 0.00 0.00 4.09 R
2967 7499 0.977395 AGCAGCTTAACGAGGAACCT 59.023 50.000 0.00 0.00 0.00 3.50 R
3739 8271 1.523711 CACTGGACACCGTTGTGCT 60.524 57.895 6.13 0.00 46.86 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.779759 TCATAAATTGGTTCGCATTGGC 58.220 40.909 0.00 0.00 0.00 4.52
24 25 3.446873 TCATAAATTGGTTCGCATTGGCT 59.553 39.130 0.00 0.00 38.10 4.75
25 26 4.642437 TCATAAATTGGTTCGCATTGGCTA 59.358 37.500 0.00 0.00 38.10 3.93
26 27 5.301551 TCATAAATTGGTTCGCATTGGCTAT 59.698 36.000 0.00 0.00 38.10 2.97
29 30 0.034574 TGGTTCGCATTGGCTATGGT 60.035 50.000 10.82 0.00 38.10 3.55
30 31 0.381801 GGTTCGCATTGGCTATGGTG 59.618 55.000 10.82 0.00 38.10 4.17
31 32 0.248621 GTTCGCATTGGCTATGGTGC 60.249 55.000 10.82 0.00 38.10 5.01
32 33 0.394216 TTCGCATTGGCTATGGTGCT 60.394 50.000 10.82 0.00 38.10 4.40
33 34 1.096967 TCGCATTGGCTATGGTGCTG 61.097 55.000 10.82 0.00 38.10 4.41
34 35 1.737816 GCATTGGCTATGGTGCTGG 59.262 57.895 10.82 0.00 36.96 4.85
35 36 1.741327 GCATTGGCTATGGTGCTGGG 61.741 60.000 10.82 0.00 36.96 4.45
36 37 0.106569 CATTGGCTATGGTGCTGGGA 60.107 55.000 0.66 0.00 0.00 4.37
37 38 0.184451 ATTGGCTATGGTGCTGGGAG 59.816 55.000 0.00 0.00 0.00 4.30
38 39 0.913934 TTGGCTATGGTGCTGGGAGA 60.914 55.000 0.00 0.00 0.00 3.71
40 41 1.341156 GGCTATGGTGCTGGGAGAGT 61.341 60.000 0.00 0.00 0.00 3.24
42 43 1.342819 GCTATGGTGCTGGGAGAGTAG 59.657 57.143 0.00 0.00 0.00 2.57
43 44 2.950781 CTATGGTGCTGGGAGAGTAGA 58.049 52.381 0.00 0.00 0.00 2.59
44 45 2.485966 ATGGTGCTGGGAGAGTAGAT 57.514 50.000 0.00 0.00 0.00 1.98
46 47 0.755686 GGTGCTGGGAGAGTAGATGG 59.244 60.000 0.00 0.00 0.00 3.51
49 50 2.045280 CTGGGAGAGTAGATGGGCG 58.955 63.158 0.00 0.00 0.00 6.13
50 51 0.468214 CTGGGAGAGTAGATGGGCGA 60.468 60.000 0.00 0.00 0.00 5.54
51 52 0.188587 TGGGAGAGTAGATGGGCGAT 59.811 55.000 0.00 0.00 0.00 4.58
54 55 1.333177 GAGAGTAGATGGGCGATGGT 58.667 55.000 0.00 0.00 0.00 3.55
68 69 2.252072 GATGGTGCCGTTGCCCTCTA 62.252 60.000 0.00 0.00 36.33 2.43
104 105 0.321122 CCTGCGCCTTTTCTCAGTCT 60.321 55.000 4.18 0.00 0.00 3.24
113 114 2.551355 TTTCTCAGTCTCATCGAGCG 57.449 50.000 0.00 0.00 0.00 5.03
146 154 1.082117 CCGGACGATGTTCTTTCGGG 61.082 60.000 0.00 0.00 40.83 5.14
162 170 1.006832 CGGGCTGATTTCACTAACCG 58.993 55.000 0.00 0.00 0.00 4.44
335 344 3.160047 CTCTGCTCGGCCAGGGAT 61.160 66.667 2.24 0.00 35.25 3.85
424 433 0.389948 GTTCACCATCGTCGGCTTCT 60.390 55.000 0.00 0.00 0.00 2.85
438 447 2.619646 CGGCTTCTAGGAGTTCTCCTAC 59.380 54.545 20.67 12.82 41.12 3.18
449 458 3.688235 AGTTCTCCTACGACTAAGTGCT 58.312 45.455 0.00 0.00 0.00 4.40
453 462 1.065926 TCCTACGACTAAGTGCTCGGA 60.066 52.381 0.00 0.00 34.07 4.55
526 545 2.432628 GTCTCGGCGGTTGACTGG 60.433 66.667 7.21 0.00 0.00 4.00
537 556 1.982395 TTGACTGGGCGACGAGGAT 60.982 57.895 4.92 0.00 41.04 3.24
541 560 2.678580 TGGGCGACGAGGATCACA 60.679 61.111 0.00 0.00 33.17 3.58
542 561 2.105128 GGGCGACGAGGATCACAG 59.895 66.667 0.00 0.00 33.17 3.66
545 564 2.711922 GCGACGAGGATCACAGGGT 61.712 63.158 0.00 0.00 33.17 4.34
570 589 0.951040 GCTGGTTCTCGGACAACCTG 60.951 60.000 14.94 14.84 43.43 4.00
582 601 0.535102 ACAACCTGAACCGGCTTCTG 60.535 55.000 0.00 8.85 0.00 3.02
584 603 3.121030 CCTGAACCGGCTTCTGCG 61.121 66.667 0.00 0.57 40.82 5.18
585 604 3.121030 CTGAACCGGCTTCTGCGG 61.121 66.667 0.00 0.00 40.82 5.69
590 609 4.107051 CCGGCTTCTGCGGCTTTG 62.107 66.667 0.00 0.00 40.82 2.77
591 610 4.107051 CGGCTTCTGCGGCTTTGG 62.107 66.667 0.00 0.00 40.82 3.28
592 611 2.672996 GGCTTCTGCGGCTTTGGA 60.673 61.111 0.00 0.00 40.82 3.53
594 613 2.694760 GCTTCTGCGGCTTTGGAGG 61.695 63.158 0.00 0.00 0.00 4.30
599 618 3.435186 GCGGCTTTGGAGGTGCTC 61.435 66.667 0.00 0.00 0.00 4.26
604 623 0.668535 GCTTTGGAGGTGCTCGTTTT 59.331 50.000 0.00 0.00 0.00 2.43
605 624 1.335051 GCTTTGGAGGTGCTCGTTTTC 60.335 52.381 0.00 0.00 0.00 2.29
606 625 1.266989 CTTTGGAGGTGCTCGTTTTCC 59.733 52.381 0.00 0.00 0.00 3.13
607 626 0.472471 TTGGAGGTGCTCGTTTTCCT 59.528 50.000 0.00 0.00 0.00 3.36
608 627 0.250295 TGGAGGTGCTCGTTTTCCTG 60.250 55.000 0.00 0.00 0.00 3.86
610 629 1.001633 GGAGGTGCTCGTTTTCCTGTA 59.998 52.381 0.00 0.00 0.00 2.74
612 631 3.335579 GAGGTGCTCGTTTTCCTGTATT 58.664 45.455 0.00 0.00 0.00 1.89
615 634 4.583073 AGGTGCTCGTTTTCCTGTATTTTT 59.417 37.500 0.00 0.00 0.00 1.94
616 635 4.915667 GGTGCTCGTTTTCCTGTATTTTTC 59.084 41.667 0.00 0.00 0.00 2.29
617 636 4.915667 GTGCTCGTTTTCCTGTATTTTTCC 59.084 41.667 0.00 0.00 0.00 3.13
619 638 5.067936 TGCTCGTTTTCCTGTATTTTTCCAA 59.932 36.000 0.00 0.00 0.00 3.53
620 639 5.629435 GCTCGTTTTCCTGTATTTTTCCAAG 59.371 40.000 0.00 0.00 0.00 3.61
621 640 5.525199 TCGTTTTCCTGTATTTTTCCAAGC 58.475 37.500 0.00 0.00 0.00 4.01
622 641 4.381566 CGTTTTCCTGTATTTTTCCAAGCG 59.618 41.667 0.00 0.00 0.00 4.68
625 644 7.309920 GTTTTCCTGTATTTTTCCAAGCGATA 58.690 34.615 0.00 0.00 0.00 2.92
626 645 6.431198 TTCCTGTATTTTTCCAAGCGATAC 57.569 37.500 0.00 0.00 0.00 2.24
627 646 4.569162 TCCTGTATTTTTCCAAGCGATACG 59.431 41.667 0.00 0.00 0.00 3.06
631 650 6.331845 TGTATTTTTCCAAGCGATACGTCTA 58.668 36.000 0.00 0.00 0.00 2.59
632 651 5.713822 ATTTTTCCAAGCGATACGTCTAC 57.286 39.130 0.00 0.00 0.00 2.59
633 652 3.853831 TTTCCAAGCGATACGTCTACA 57.146 42.857 0.00 0.00 0.00 2.74
634 653 2.838386 TCCAAGCGATACGTCTACAC 57.162 50.000 0.00 0.00 0.00 2.90
635 654 1.402968 TCCAAGCGATACGTCTACACC 59.597 52.381 0.00 0.00 0.00 4.16
636 655 1.133598 CCAAGCGATACGTCTACACCA 59.866 52.381 0.00 0.00 0.00 4.17
638 657 2.556534 AGCGATACGTCTACACCAAC 57.443 50.000 0.00 0.00 0.00 3.77
639 658 1.814394 AGCGATACGTCTACACCAACA 59.186 47.619 0.00 0.00 0.00 3.33
640 659 2.229543 AGCGATACGTCTACACCAACAA 59.770 45.455 0.00 0.00 0.00 2.83
642 661 3.615496 GCGATACGTCTACACCAACAAAT 59.385 43.478 0.00 0.00 0.00 2.32
643 662 4.491924 GCGATACGTCTACACCAACAAATG 60.492 45.833 0.00 0.00 0.00 2.32
644 663 4.491924 CGATACGTCTACACCAACAAATGC 60.492 45.833 0.00 0.00 0.00 3.56
645 664 1.529438 ACGTCTACACCAACAAATGCG 59.471 47.619 0.00 0.00 0.00 4.73
647 666 2.159841 CGTCTACACCAACAAATGCGAG 60.160 50.000 0.00 0.00 0.00 5.03
648 667 1.804151 TCTACACCAACAAATGCGAGC 59.196 47.619 0.00 0.00 0.00 5.03
649 668 1.806542 CTACACCAACAAATGCGAGCT 59.193 47.619 0.00 0.00 0.00 4.09
650 669 1.032014 ACACCAACAAATGCGAGCTT 58.968 45.000 0.00 0.00 0.00 3.74
651 670 1.269206 ACACCAACAAATGCGAGCTTG 60.269 47.619 0.00 0.00 0.00 4.01
653 672 2.031245 CACCAACAAATGCGAGCTTGTA 60.031 45.455 2.14 0.00 34.71 2.41
654 673 2.621055 ACCAACAAATGCGAGCTTGTAA 59.379 40.909 2.14 0.00 34.71 2.41
657 676 4.229096 CAACAAATGCGAGCTTGTAATGT 58.771 39.130 2.14 5.51 34.71 2.71
658 677 5.389778 CAACAAATGCGAGCTTGTAATGTA 58.610 37.500 12.24 0.00 34.71 2.29
659 678 5.221891 ACAAATGCGAGCTTGTAATGTAG 57.778 39.130 10.75 0.00 34.04 2.74
661 680 5.163854 ACAAATGCGAGCTTGTAATGTAGAC 60.164 40.000 10.75 0.00 34.04 2.59
662 681 3.868757 TGCGAGCTTGTAATGTAGACT 57.131 42.857 2.14 0.00 0.00 3.24
663 682 3.770666 TGCGAGCTTGTAATGTAGACTC 58.229 45.455 2.14 0.00 0.00 3.36
664 683 2.784380 GCGAGCTTGTAATGTAGACTCG 59.216 50.000 2.14 0.00 46.06 4.18
665 684 3.487042 GCGAGCTTGTAATGTAGACTCGA 60.487 47.826 13.09 0.00 46.18 4.04
667 686 4.017380 AGCTTGTAATGTAGACTCGACG 57.983 45.455 0.00 0.00 0.00 5.12
668 687 3.688185 AGCTTGTAATGTAGACTCGACGA 59.312 43.478 0.00 0.00 0.00 4.20
669 688 3.784994 GCTTGTAATGTAGACTCGACGAC 59.215 47.826 0.00 0.00 0.00 4.34
670 689 4.341099 CTTGTAATGTAGACTCGACGACC 58.659 47.826 0.00 0.00 0.00 4.79
671 690 2.349580 TGTAATGTAGACTCGACGACCG 59.650 50.000 0.00 0.00 40.25 4.79
672 691 0.731417 AATGTAGACTCGACGACCGG 59.269 55.000 0.00 0.00 39.14 5.28
673 692 0.107993 ATGTAGACTCGACGACCGGA 60.108 55.000 9.46 0.00 39.14 5.14
674 693 0.738762 TGTAGACTCGACGACCGGAG 60.739 60.000 9.46 3.87 39.14 4.63
678 697 4.477975 CTCGACGACCGGAGTGCC 62.478 72.222 9.46 0.00 39.14 5.01
680 699 4.778415 CGACGACCGGAGTGCCTG 62.778 72.222 9.46 0.00 33.91 4.85
685 704 1.681327 GACCGGAGTGCCTGGTAGA 60.681 63.158 9.46 0.00 39.88 2.59
686 705 1.229082 ACCGGAGTGCCTGGTAGAA 60.229 57.895 9.46 0.00 38.65 2.10
688 707 0.970937 CCGGAGTGCCTGGTAGAAGA 60.971 60.000 0.00 0.00 0.00 2.87
689 708 0.895530 CGGAGTGCCTGGTAGAAGAA 59.104 55.000 0.00 0.00 0.00 2.52
690 709 1.275291 CGGAGTGCCTGGTAGAAGAAA 59.725 52.381 0.00 0.00 0.00 2.52
691 710 2.093447 CGGAGTGCCTGGTAGAAGAAAT 60.093 50.000 0.00 0.00 0.00 2.17
693 712 2.680339 GAGTGCCTGGTAGAAGAAATGC 59.320 50.000 0.00 0.00 0.00 3.56
695 714 3.519510 AGTGCCTGGTAGAAGAAATGCTA 59.480 43.478 0.00 0.00 0.00 3.49
696 715 3.873952 GTGCCTGGTAGAAGAAATGCTAG 59.126 47.826 0.00 0.00 0.00 3.42
699 718 4.944317 GCCTGGTAGAAGAAATGCTAGTTT 59.056 41.667 0.00 0.00 0.00 2.66
700 719 6.113411 GCCTGGTAGAAGAAATGCTAGTTTA 58.887 40.000 0.00 0.00 0.00 2.01
701 720 6.037281 GCCTGGTAGAAGAAATGCTAGTTTAC 59.963 42.308 0.00 0.00 0.00 2.01
702 721 7.103641 CCTGGTAGAAGAAATGCTAGTTTACA 58.896 38.462 0.00 0.00 0.00 2.41
703 722 7.606456 CCTGGTAGAAGAAATGCTAGTTTACAA 59.394 37.037 0.00 0.00 0.00 2.41
710 729 7.636150 AGAAATGCTAGTTTACAATCTGCAT 57.364 32.000 0.00 0.00 40.72 3.96
711 730 7.701445 AGAAATGCTAGTTTACAATCTGCATC 58.299 34.615 0.00 0.00 38.49 3.91
712 731 7.555554 AGAAATGCTAGTTTACAATCTGCATCT 59.444 33.333 0.00 0.00 38.49 2.90
713 732 6.857777 ATGCTAGTTTACAATCTGCATCTC 57.142 37.500 0.00 0.00 35.12 2.75
714 733 4.805719 TGCTAGTTTACAATCTGCATCTCG 59.194 41.667 0.00 0.00 0.00 4.04
715 734 4.318404 GCTAGTTTACAATCTGCATCTCGC 60.318 45.833 0.00 0.00 42.89 5.03
716 735 2.939103 AGTTTACAATCTGCATCTCGCC 59.061 45.455 0.00 0.00 41.33 5.54
717 736 1.953559 TTACAATCTGCATCTCGCCC 58.046 50.000 0.00 0.00 41.33 6.13
718 737 0.106708 TACAATCTGCATCTCGCCCC 59.893 55.000 0.00 0.00 41.33 5.80
719 738 1.147824 CAATCTGCATCTCGCCCCT 59.852 57.895 0.00 0.00 41.33 4.79
722 741 1.340399 ATCTGCATCTCGCCCCTGAA 61.340 55.000 0.00 0.00 41.33 3.02
723 742 1.078214 CTGCATCTCGCCCCTGAAA 60.078 57.895 0.00 0.00 41.33 2.69
725 744 0.677731 TGCATCTCGCCCCTGAAAAG 60.678 55.000 0.00 0.00 41.33 2.27
726 745 0.678048 GCATCTCGCCCCTGAAAAGT 60.678 55.000 0.00 0.00 32.94 2.66
727 746 1.089920 CATCTCGCCCCTGAAAAGTG 58.910 55.000 0.00 0.00 0.00 3.16
730 749 0.674895 CTCGCCCCTGAAAAGTGAGG 60.675 60.000 0.00 0.00 35.09 3.86
732 751 0.674895 CGCCCCTGAAAAGTGAGGAG 60.675 60.000 0.00 0.00 0.00 3.69
733 752 0.962855 GCCCCTGAAAAGTGAGGAGC 60.963 60.000 0.00 0.00 0.00 4.70
734 753 0.322906 CCCCTGAAAAGTGAGGAGCC 60.323 60.000 0.00 0.00 0.00 4.70
735 754 0.401738 CCCTGAAAAGTGAGGAGCCA 59.598 55.000 0.00 0.00 0.00 4.75
736 755 1.202927 CCCTGAAAAGTGAGGAGCCAA 60.203 52.381 0.00 0.00 0.00 4.52
738 757 1.882623 CTGAAAAGTGAGGAGCCAACC 59.117 52.381 0.00 0.00 0.00 3.77
739 758 0.875059 GAAAAGTGAGGAGCCAACCG 59.125 55.000 0.00 0.00 34.73 4.44
740 759 0.472471 AAAAGTGAGGAGCCAACCGA 59.528 50.000 0.00 0.00 34.73 4.69
741 760 0.693049 AAAGTGAGGAGCCAACCGAT 59.307 50.000 0.00 0.00 34.73 4.18
745 764 1.522580 GAGGAGCCAACCGATCTGC 60.523 63.158 0.00 0.00 34.73 4.26
747 766 1.153086 GGAGCCAACCGATCTGCAT 60.153 57.895 0.00 0.00 0.00 3.96
749 768 0.179062 GAGCCAACCGATCTGCATCT 60.179 55.000 0.00 0.00 0.00 2.90
750 769 0.179062 AGCCAACCGATCTGCATCTC 60.179 55.000 0.00 0.00 0.00 2.75
752 771 1.293924 CCAACCGATCTGCATCTCAC 58.706 55.000 0.00 0.00 0.00 3.51
756 775 1.552337 ACCGATCTGCATCTCACACTT 59.448 47.619 0.00 0.00 0.00 3.16
760 779 3.869832 CGATCTGCATCTCACACTTGATT 59.130 43.478 0.00 0.00 0.00 2.57
761 780 4.331992 CGATCTGCATCTCACACTTGATTT 59.668 41.667 0.00 0.00 0.00 2.17
762 781 5.502058 CGATCTGCATCTCACACTTGATTTC 60.502 44.000 0.00 0.00 0.00 2.17
766 785 3.425359 GCATCTCACACTTGATTTCACGG 60.425 47.826 0.00 0.00 0.00 4.94
767 786 3.744238 TCTCACACTTGATTTCACGGA 57.256 42.857 0.00 0.00 0.00 4.69
768 787 4.066646 TCTCACACTTGATTTCACGGAA 57.933 40.909 0.00 0.00 0.00 4.30
769 788 3.807622 TCTCACACTTGATTTCACGGAAC 59.192 43.478 0.00 0.00 0.00 3.62
770 789 3.536570 TCACACTTGATTTCACGGAACA 58.463 40.909 0.00 0.00 0.00 3.18
771 790 4.133820 TCACACTTGATTTCACGGAACAT 58.866 39.130 0.00 0.00 0.00 2.71
773 792 3.236816 CACTTGATTTCACGGAACATGC 58.763 45.455 0.00 0.00 0.00 4.06
775 794 2.198827 TGATTTCACGGAACATGCCT 57.801 45.000 0.00 0.00 0.00 4.75
776 795 2.513753 TGATTTCACGGAACATGCCTT 58.486 42.857 0.00 0.00 0.00 4.35
777 796 2.228582 TGATTTCACGGAACATGCCTTG 59.771 45.455 0.00 0.00 0.00 3.61
778 797 1.974265 TTTCACGGAACATGCCTTGA 58.026 45.000 0.00 0.00 0.00 3.02
779 798 2.198827 TTCACGGAACATGCCTTGAT 57.801 45.000 0.00 0.00 0.00 2.57
780 799 1.737838 TCACGGAACATGCCTTGATC 58.262 50.000 0.00 0.00 0.00 2.92
781 800 0.734889 CACGGAACATGCCTTGATCC 59.265 55.000 0.00 3.71 42.43 3.36
782 801 0.327924 ACGGAACATGCCTTGATCCA 59.672 50.000 11.83 0.00 45.30 3.41
783 802 0.734889 CGGAACATGCCTTGATCCAC 59.265 55.000 11.83 0.00 45.30 4.02
784 803 1.838112 GGAACATGCCTTGATCCACA 58.162 50.000 7.83 0.00 44.61 4.17
790 809 0.764271 TGCCTTGATCCACACTCACA 59.236 50.000 0.00 0.00 0.00 3.58
791 810 1.142667 TGCCTTGATCCACACTCACAA 59.857 47.619 0.00 0.00 0.00 3.33
792 811 2.229792 GCCTTGATCCACACTCACAAA 58.770 47.619 0.00 0.00 0.00 2.83
794 813 3.480470 CCTTGATCCACACTCACAAAGT 58.520 45.455 0.00 0.00 39.44 2.66
795 814 3.499918 CCTTGATCCACACTCACAAAGTC 59.500 47.826 0.00 0.00 35.45 3.01
797 816 3.466836 TGATCCACACTCACAAAGTCAC 58.533 45.455 0.00 0.00 35.45 3.67
800 819 3.884895 TCCACACTCACAAAGTCACAAT 58.115 40.909 0.00 0.00 35.45 2.71
803 822 6.061441 TCCACACTCACAAAGTCACAATAAT 58.939 36.000 0.00 0.00 35.45 1.28
804 823 7.220740 TCCACACTCACAAAGTCACAATAATA 58.779 34.615 0.00 0.00 35.45 0.98
805 824 7.387673 TCCACACTCACAAAGTCACAATAATAG 59.612 37.037 0.00 0.00 35.45 1.73
806 825 7.173218 CCACACTCACAAAGTCACAATAATAGT 59.827 37.037 0.00 0.00 35.45 2.12
807 826 8.011673 CACACTCACAAAGTCACAATAATAGTG 58.988 37.037 0.00 0.00 35.45 2.74
808 827 7.173218 ACACTCACAAAGTCACAATAATAGTGG 59.827 37.037 0.00 0.00 35.45 4.00
809 828 6.655003 ACTCACAAAGTCACAATAATAGTGGG 59.345 38.462 0.00 0.00 37.58 4.61
811 830 5.710099 CACAAAGTCACAATAATAGTGGGGT 59.290 40.000 0.00 0.00 37.58 4.95
812 831 6.882140 CACAAAGTCACAATAATAGTGGGGTA 59.118 38.462 0.00 0.00 37.58 3.69
813 832 7.065803 CACAAAGTCACAATAATAGTGGGGTAG 59.934 40.741 0.00 0.00 37.58 3.18
815 834 6.886178 AGTCACAATAATAGTGGGGTAGTT 57.114 37.500 0.00 0.00 37.58 2.24
816 835 7.983166 AGTCACAATAATAGTGGGGTAGTTA 57.017 36.000 0.00 0.00 37.58 2.24
817 836 8.562949 AGTCACAATAATAGTGGGGTAGTTAT 57.437 34.615 0.00 0.00 37.58 1.89
838 857 8.840321 AGTTATTAATTCCATCGATTTGGACAG 58.160 33.333 7.27 0.00 45.42 3.51
839 858 6.639632 ATTAATTCCATCGATTTGGACAGG 57.360 37.500 7.27 0.00 45.42 4.00
840 859 1.750193 TTCCATCGATTTGGACAGGC 58.250 50.000 7.27 0.00 45.42 4.85
841 860 0.107214 TCCATCGATTTGGACAGGCC 60.107 55.000 3.55 0.00 40.90 5.19
842 861 1.103398 CCATCGATTTGGACAGGCCC 61.103 60.000 0.00 0.00 39.25 5.80
845 864 1.000896 CGATTTGGACAGGCCCCTT 60.001 57.895 0.00 0.00 34.97 3.95
846 865 1.032114 CGATTTGGACAGGCCCCTTC 61.032 60.000 0.00 0.00 34.97 3.46
847 866 0.332972 GATTTGGACAGGCCCCTTCT 59.667 55.000 0.00 0.00 34.97 2.85
848 867 0.332972 ATTTGGACAGGCCCCTTCTC 59.667 55.000 0.00 0.00 34.97 2.87
849 868 1.789576 TTTGGACAGGCCCCTTCTCC 61.790 60.000 0.00 0.00 34.97 3.71
851 870 2.003548 GGACAGGCCCCTTCTCCAT 61.004 63.158 0.00 0.00 0.00 3.41
852 871 1.529309 GACAGGCCCCTTCTCCATC 59.471 63.158 0.00 0.00 0.00 3.51
853 872 1.229951 ACAGGCCCCTTCTCCATCA 60.230 57.895 0.00 0.00 0.00 3.07
854 873 1.225704 CAGGCCCCTTCTCCATCAC 59.774 63.158 0.00 0.00 0.00 3.06
855 874 2.190578 GGCCCCTTCTCCATCACG 59.809 66.667 0.00 0.00 0.00 4.35
856 875 2.514824 GCCCCTTCTCCATCACGC 60.515 66.667 0.00 0.00 0.00 5.34
857 876 2.202932 CCCCTTCTCCATCACGCG 60.203 66.667 3.53 3.53 0.00 6.01
858 877 2.721167 CCCCTTCTCCATCACGCGA 61.721 63.158 15.93 0.00 0.00 5.87
859 878 1.227089 CCCTTCTCCATCACGCGAG 60.227 63.158 15.93 4.59 0.00 5.03
860 879 1.880340 CCTTCTCCATCACGCGAGC 60.880 63.158 15.93 0.00 0.00 5.03
861 880 1.880340 CTTCTCCATCACGCGAGCC 60.880 63.158 15.93 0.00 0.00 4.70
863 882 2.835701 TTCTCCATCACGCGAGCCAC 62.836 60.000 15.93 0.00 0.00 5.01
864 883 4.794439 TCCATCACGCGAGCCACG 62.794 66.667 15.93 0.00 45.66 4.94
872 891 4.760047 GCGAGCCACGTGGATGGT 62.760 66.667 38.30 18.34 42.28 3.55
874 893 1.226974 CGAGCCACGTGGATGGTAG 60.227 63.158 38.30 18.11 42.28 3.18
876 895 1.108776 GAGCCACGTGGATGGTAGTA 58.891 55.000 38.30 0.00 42.28 1.82
879 898 3.507411 AGCCACGTGGATGGTAGTATAT 58.493 45.455 38.30 5.04 42.28 0.86
882 901 5.541101 AGCCACGTGGATGGTAGTATATTAA 59.459 40.000 38.30 0.00 42.28 1.40
883 902 6.212791 AGCCACGTGGATGGTAGTATATTAAT 59.787 38.462 38.30 0.00 42.28 1.40
884 903 7.398047 AGCCACGTGGATGGTAGTATATTAATA 59.602 37.037 38.30 0.00 42.28 0.98
885 904 8.036575 GCCACGTGGATGGTAGTATATTAATAA 58.963 37.037 38.30 0.00 42.28 1.40
905 924 3.290948 AAAAATATACCGCCCAGAGCA 57.709 42.857 0.00 0.00 44.04 4.26
907 926 0.035458 AATATACCGCCCAGAGCAGC 59.965 55.000 0.00 0.00 44.04 5.25
908 927 0.833834 ATATACCGCCCAGAGCAGCT 60.834 55.000 0.00 0.00 44.04 4.24
909 928 1.748329 TATACCGCCCAGAGCAGCTG 61.748 60.000 10.11 10.11 44.04 4.24
911 930 3.774528 CCGCCCAGAGCAGCTGTA 61.775 66.667 16.64 0.00 43.33 2.74
913 932 2.103042 CGCCCAGAGCAGCTGTAAC 61.103 63.158 16.64 7.17 43.33 2.50
945 3173 4.462394 GCAGAAGGCACACACTGA 57.538 55.556 0.00 0.00 43.97 3.41
946 3174 2.706636 GCAGAAGGCACACACTGAA 58.293 52.632 0.00 0.00 43.97 3.02
947 3175 1.242076 GCAGAAGGCACACACTGAAT 58.758 50.000 0.00 0.00 43.97 2.57
1413 3691 3.400054 CCCCTCCCCTGTTCCGAC 61.400 72.222 0.00 0.00 0.00 4.79
1417 3695 1.221840 CTCCCCTGTTCCGACCATG 59.778 63.158 0.00 0.00 0.00 3.66
1421 3699 0.881118 CCCTGTTCCGACCATGTTTG 59.119 55.000 0.00 0.00 0.00 2.93
1428 3706 0.452987 CCGACCATGTTTGGAGCATG 59.547 55.000 0.00 0.00 46.92 4.06
1429 3707 1.452110 CGACCATGTTTGGAGCATGA 58.548 50.000 0.00 0.00 46.92 3.07
1430 3708 2.019249 CGACCATGTTTGGAGCATGAT 58.981 47.619 0.00 0.00 46.92 2.45
1431 3709 2.032550 CGACCATGTTTGGAGCATGATC 59.967 50.000 1.26 1.26 46.92 2.92
1477 3755 0.941542 GCCATTATTGCGCCGTAGAA 59.058 50.000 4.18 0.00 0.00 2.10
1478 3756 1.535462 GCCATTATTGCGCCGTAGAAT 59.465 47.619 4.18 0.00 0.00 2.40
1479 3757 2.412847 GCCATTATTGCGCCGTAGAATC 60.413 50.000 4.18 0.00 0.00 2.52
1481 3759 4.242475 CCATTATTGCGCCGTAGAATCTA 58.758 43.478 4.18 0.00 0.00 1.98
1482 3760 4.091509 CCATTATTGCGCCGTAGAATCTAC 59.908 45.833 10.26 10.26 0.00 2.59
1484 3762 2.486951 TTGCGCCGTAGAATCTACTC 57.513 50.000 17.23 8.67 0.00 2.59
1487 3765 0.385723 CGCCGTAGAATCTACTCCGC 60.386 60.000 17.23 14.01 0.00 5.54
1489 3767 2.149578 GCCGTAGAATCTACTCCGCTA 58.850 52.381 17.23 0.00 0.00 4.26
1490 3768 2.095819 GCCGTAGAATCTACTCCGCTAC 60.096 54.545 17.23 0.00 0.00 3.58
1492 3770 3.562973 CCGTAGAATCTACTCCGCTACAA 59.437 47.826 17.23 0.00 32.95 2.41
1497 3775 4.406003 AGAATCTACTCCGCTACAAATGGT 59.594 41.667 0.00 0.00 0.00 3.55
1499 3777 4.119442 TCTACTCCGCTACAAATGGTTC 57.881 45.455 0.00 0.00 0.00 3.62
1501 3779 4.951715 TCTACTCCGCTACAAATGGTTCTA 59.048 41.667 0.00 0.00 0.00 2.10
1502 3780 4.755266 ACTCCGCTACAAATGGTTCTAT 57.245 40.909 0.00 0.00 0.00 1.98
1503 3781 5.864418 ACTCCGCTACAAATGGTTCTATA 57.136 39.130 0.00 0.00 0.00 1.31
1504 3782 5.598769 ACTCCGCTACAAATGGTTCTATAC 58.401 41.667 0.00 0.00 0.00 1.47
1520 3853 6.314648 GGTTCTATACTACGAAACCTTTTGGG 59.685 42.308 0.00 0.00 46.08 4.12
1525 3858 1.116308 ACGAAACCTTTTGGGGTTGG 58.884 50.000 0.00 0.00 46.61 3.77
1578 3911 1.011904 CGTCGGCGAATTGATGCAG 60.012 57.895 12.92 0.00 41.33 4.41
1583 3916 1.089920 GGCGAATTGATGCAGTGTCT 58.910 50.000 0.00 0.00 0.00 3.41
1585 3918 2.512885 GCGAATTGATGCAGTGTCTTG 58.487 47.619 0.00 0.00 0.00 3.02
1605 3941 0.659427 TCGCCTATCCTTCGTACACG 59.341 55.000 0.00 0.00 41.45 4.49
1623 3959 3.033185 CACGAACGAAAAATGTGTGGAC 58.967 45.455 0.14 0.00 0.00 4.02
1648 3984 3.686128 CGATCTCGTTGAGGTAACAGAG 58.314 50.000 0.00 0.00 39.30 3.35
1677 4014 0.611714 GCGGGGAAGTAACCAGAAGA 59.388 55.000 0.00 0.00 0.00 2.87
1678 4015 1.209747 GCGGGGAAGTAACCAGAAGAT 59.790 52.381 0.00 0.00 0.00 2.40
1679 4016 2.906354 CGGGGAAGTAACCAGAAGATG 58.094 52.381 0.00 0.00 0.00 2.90
1681 4018 3.134804 CGGGGAAGTAACCAGAAGATGAT 59.865 47.826 0.00 0.00 0.00 2.45
1682 4019 4.455606 GGGGAAGTAACCAGAAGATGATG 58.544 47.826 0.00 0.00 0.00 3.07
1696 4043 4.669206 AGATGATGGACAGATGAGACAC 57.331 45.455 0.00 0.00 0.00 3.67
1724 4071 1.588932 GCGATGCGTACTGCTGCTA 60.589 57.895 0.00 0.00 46.63 3.49
1725 4072 1.543941 GCGATGCGTACTGCTGCTAG 61.544 60.000 0.00 0.00 46.63 3.42
1726 4073 0.248661 CGATGCGTACTGCTGCTAGT 60.249 55.000 0.00 5.63 46.63 2.57
1727 4074 1.203928 GATGCGTACTGCTGCTAGTG 58.796 55.000 12.80 1.81 46.63 2.74
1728 4075 0.817654 ATGCGTACTGCTGCTAGTGA 59.182 50.000 12.80 0.00 46.63 3.41
1730 4077 1.204704 TGCGTACTGCTGCTAGTGATT 59.795 47.619 12.80 0.00 46.63 2.57
1731 4078 1.855360 GCGTACTGCTGCTAGTGATTC 59.145 52.381 12.80 3.44 41.73 2.52
1733 4080 3.111838 CGTACTGCTGCTAGTGATTCTG 58.888 50.000 12.80 0.00 32.19 3.02
1735 4082 4.498850 CGTACTGCTGCTAGTGATTCTGAT 60.499 45.833 12.80 0.00 32.19 2.90
1736 4083 4.057406 ACTGCTGCTAGTGATTCTGATC 57.943 45.455 0.00 0.00 0.00 2.92
1752 4099 8.529476 TGATTCTGATCACATATATCTCTGTGG 58.471 37.037 11.11 0.00 42.37 4.17
1753 4100 8.661752 ATTCTGATCACATATATCTCTGTGGA 57.338 34.615 11.11 1.70 42.37 4.02
1754 4101 8.661752 TTCTGATCACATATATCTCTGTGGAT 57.338 34.615 11.11 5.84 42.37 3.41
1755 4102 8.064336 TCTGATCACATATATCTCTGTGGATG 57.936 38.462 11.11 0.00 42.37 3.51
1756 4103 6.637657 TGATCACATATATCTCTGTGGATGC 58.362 40.000 11.11 0.00 42.37 3.91
1757 4104 6.439692 TGATCACATATATCTCTGTGGATGCT 59.560 38.462 11.11 0.00 42.37 3.79
1759 4106 7.968014 TCACATATATCTCTGTGGATGCTAT 57.032 36.000 11.11 0.00 42.37 2.97
1761 4108 8.473219 TCACATATATCTCTGTGGATGCTATTC 58.527 37.037 11.11 0.00 42.37 1.75
1762 4109 8.476447 CACATATATCTCTGTGGATGCTATTCT 58.524 37.037 5.50 0.00 39.24 2.40
1763 4110 9.044646 ACATATATCTCTGTGGATGCTATTCTT 57.955 33.333 0.00 0.00 0.00 2.52
1764 4111 9.887629 CATATATCTCTGTGGATGCTATTCTTT 57.112 33.333 0.00 0.00 0.00 2.52
1766 4113 6.939132 ATCTCTGTGGATGCTATTCTTTTG 57.061 37.500 0.00 0.00 0.00 2.44
1767 4114 6.053632 TCTCTGTGGATGCTATTCTTTTGA 57.946 37.500 0.00 0.00 0.00 2.69
1768 4115 6.656902 TCTCTGTGGATGCTATTCTTTTGAT 58.343 36.000 0.00 0.00 0.00 2.57
1769 4116 6.765036 TCTCTGTGGATGCTATTCTTTTGATC 59.235 38.462 0.00 0.00 0.00 2.92
1773 4674 5.975939 GTGGATGCTATTCTTTTGATCTTGC 59.024 40.000 0.00 0.00 0.00 4.01
1775 4676 5.220931 GGATGCTATTCTTTTGATCTTGCGT 60.221 40.000 0.00 0.00 0.00 5.24
1776 4677 6.017934 GGATGCTATTCTTTTGATCTTGCGTA 60.018 38.462 0.00 0.00 0.00 4.42
1778 4679 6.106003 TGCTATTCTTTTGATCTTGCGTAGA 58.894 36.000 0.00 0.00 37.28 2.59
1780 4681 6.477033 GCTATTCTTTTGATCTTGCGTAGAGA 59.523 38.462 0.00 0.00 36.02 3.10
1785 4686 4.371855 TTGATCTTGCGTAGAGATTCGT 57.628 40.909 0.00 0.00 36.02 3.85
1825 4844 6.539826 TCTTATGCACTATGTCACTTGATTGG 59.460 38.462 0.00 0.00 0.00 3.16
1837 4867 5.009631 TCACTTGATTGGGACATGGTTAAG 58.990 41.667 0.00 0.00 39.30 1.85
1841 4871 4.843728 TGATTGGGACATGGTTAAGTCTC 58.156 43.478 0.00 0.00 39.30 3.36
1842 4872 4.288366 TGATTGGGACATGGTTAAGTCTCA 59.712 41.667 0.00 0.00 43.11 3.27
1844 4874 3.248024 TGGGACATGGTTAAGTCTCAGT 58.752 45.455 0.00 0.00 40.15 3.41
1846 4876 3.260884 GGGACATGGTTAAGTCTCAGTCA 59.739 47.826 0.00 0.00 35.33 3.41
1847 4877 4.262894 GGGACATGGTTAAGTCTCAGTCAA 60.263 45.833 0.00 0.00 35.33 3.18
1848 4878 5.491982 GGACATGGTTAAGTCTCAGTCAAT 58.508 41.667 0.00 0.00 35.18 2.57
1851 4881 6.533730 ACATGGTTAAGTCTCAGTCAATTGA 58.466 36.000 3.38 3.38 0.00 2.57
1852 4882 6.652481 ACATGGTTAAGTCTCAGTCAATTGAG 59.348 38.462 8.80 0.00 44.74 3.02
1861 4891 4.838423 TCTCAGTCAATTGAGACCTAACCA 59.162 41.667 8.80 0.00 46.42 3.67
1862 4892 4.894784 TCAGTCAATTGAGACCTAACCAC 58.105 43.478 8.80 0.00 39.34 4.16
1863 4893 4.346709 TCAGTCAATTGAGACCTAACCACA 59.653 41.667 8.80 0.00 39.34 4.17
1865 4895 4.348168 AGTCAATTGAGACCTAACCACACT 59.652 41.667 8.80 0.00 39.34 3.55
1866 4896 5.063880 GTCAATTGAGACCTAACCACACTT 58.936 41.667 8.80 0.00 32.36 3.16
1867 4897 5.531287 GTCAATTGAGACCTAACCACACTTT 59.469 40.000 8.80 0.00 32.36 2.66
1870 4900 4.081322 TGAGACCTAACCACACTTTTCC 57.919 45.455 0.00 0.00 0.00 3.13
1871 4901 3.714798 TGAGACCTAACCACACTTTTCCT 59.285 43.478 0.00 0.00 0.00 3.36
1873 5178 5.011738 TGAGACCTAACCACACTTTTCCTAG 59.988 44.000 0.00 0.00 0.00 3.02
1875 5180 5.246429 AGACCTAACCACACTTTTCCTAGAG 59.754 44.000 0.00 0.00 0.00 2.43
1877 5182 5.246429 ACCTAACCACACTTTTCCTAGAGAG 59.754 44.000 0.00 0.00 0.00 3.20
1880 5185 3.259625 ACCACACTTTTCCTAGAGAGAGC 59.740 47.826 0.00 0.00 0.00 4.09
1893 5198 0.626916 AGAGAGCTACTCCCTCCGTT 59.373 55.000 8.89 0.00 45.96 4.44
1895 5200 0.396001 AGAGCTACTCCCTCCGTTCC 60.396 60.000 0.00 0.00 0.00 3.62
1897 5202 0.032017 AGCTACTCCCTCCGTTCCAT 60.032 55.000 0.00 0.00 0.00 3.41
1899 5204 2.037144 GCTACTCCCTCCGTTCCATAA 58.963 52.381 0.00 0.00 0.00 1.90
1903 5209 5.221581 GCTACTCCCTCCGTTCCATAATAAA 60.222 44.000 0.00 0.00 0.00 1.40
1906 5212 5.045432 ACTCCCTCCGTTCCATAATAAAACA 60.045 40.000 0.00 0.00 0.00 2.83
1907 5213 5.187687 TCCCTCCGTTCCATAATAAAACAC 58.812 41.667 0.00 0.00 0.00 3.32
1930 5236 6.032693 ACTCTTATATTATGGGAAGGAGGGG 58.967 44.000 0.00 0.00 0.00 4.79
1934 5240 2.507478 TTATGGGAAGGAGGGGGTAG 57.493 55.000 0.00 0.00 0.00 3.18
1935 5241 1.336347 TATGGGAAGGAGGGGGTAGT 58.664 55.000 0.00 0.00 0.00 2.73
1936 5242 1.336347 ATGGGAAGGAGGGGGTAGTA 58.664 55.000 0.00 0.00 0.00 1.82
1937 5243 1.336347 TGGGAAGGAGGGGGTAGTAT 58.664 55.000 0.00 0.00 0.00 2.12
1938 5244 1.660430 TGGGAAGGAGGGGGTAGTATT 59.340 52.381 0.00 0.00 0.00 1.89
1939 5245 2.336891 GGGAAGGAGGGGGTAGTATTC 58.663 57.143 0.00 0.00 0.00 1.75
1940 5246 2.361070 GGGAAGGAGGGGGTAGTATTCA 60.361 54.545 0.00 0.00 0.00 2.57
1941 5247 3.390819 GGAAGGAGGGGGTAGTATTCAA 58.609 50.000 0.00 0.00 0.00 2.69
1942 5248 3.391626 GGAAGGAGGGGGTAGTATTCAAG 59.608 52.174 0.00 0.00 0.00 3.02
1943 5249 3.061909 AGGAGGGGGTAGTATTCAAGG 57.938 52.381 0.00 0.00 0.00 3.61
1944 5250 2.055579 GGAGGGGGTAGTATTCAAGGG 58.944 57.143 0.00 0.00 0.00 3.95
1945 5251 2.055579 GAGGGGGTAGTATTCAAGGGG 58.944 57.143 0.00 0.00 0.00 4.79
1956 6289 9.059023 GGTAGTATTCAAGGGGAAATATCCTAT 57.941 37.037 0.00 0.00 45.77 2.57
1964 6297 7.182749 TCAAGGGGAAATATCCTATGATACCAG 59.817 40.741 0.00 0.00 45.77 4.00
1968 6301 7.147532 GGGGAAATATCCTATGATACCAGGTAC 60.148 44.444 0.00 0.00 45.77 3.34
1969 6302 7.402071 GGGAAATATCCTATGATACCAGGTACA 59.598 40.741 0.00 2.95 45.77 2.90
1998 6344 7.867445 ACCAAATTTACATGTGTCGAAAATC 57.133 32.000 9.11 0.00 0.00 2.17
2000 6346 8.141268 ACCAAATTTACATGTGTCGAAAATCTT 58.859 29.630 9.11 1.71 0.00 2.40
2042 6388 6.013725 TCACAAAACATATGTCTACTGTCCCT 60.014 38.462 9.23 0.00 0.00 4.20
2055 6401 7.147620 TGTCTACTGTCCCTAAAAAGTTCAGAA 60.148 37.037 0.00 0.00 0.00 3.02
2063 6409 9.031360 GTCCCTAAAAAGTTCAGAACAAAATTC 57.969 33.333 15.85 0.00 0.00 2.17
2074 6420 8.469125 GTTCAGAACAAAATTCGAAATACACAC 58.531 33.333 8.54 0.00 0.00 3.82
2076 6422 7.855409 TCAGAACAAAATTCGAAATACACACTG 59.145 33.333 0.00 8.18 0.00 3.66
2080 6426 7.925993 ACAAAATTCGAAATACACACTGAGAA 58.074 30.769 0.00 0.00 0.00 2.87
2082 6428 9.398170 CAAAATTCGAAATACACACTGAGAAAT 57.602 29.630 0.00 0.00 0.00 2.17
2083 6429 9.965824 AAAATTCGAAATACACACTGAGAAATT 57.034 25.926 0.00 0.00 0.00 1.82
2116 6462 8.773033 AATAGGATGAATAGTGCCAGAAAAAT 57.227 30.769 0.00 0.00 0.00 1.82
2117 6463 9.866655 AATAGGATGAATAGTGCCAGAAAAATA 57.133 29.630 0.00 0.00 0.00 1.40
2120 6466 8.494433 AGGATGAATAGTGCCAGAAAAATACTA 58.506 33.333 0.00 0.00 0.00 1.82
2124 6470 8.405531 TGAATAGTGCCAGAAAAATACTAATGC 58.594 33.333 0.00 0.00 0.00 3.56
2126 6472 5.954335 AGTGCCAGAAAAATACTAATGCAC 58.046 37.500 0.00 0.00 45.03 4.57
2138 6484 8.746922 AAATACTAATGCACAAAATGACACTG 57.253 30.769 0.00 0.00 0.00 3.66
2145 6491 4.142204 TGCACAAAATGACACTGTTCACAT 60.142 37.500 0.00 0.00 0.00 3.21
2211 6557 7.366847 TGGATTTGAACTTTTTGGGATTGTA 57.633 32.000 0.00 0.00 0.00 2.41
2220 6566 5.243730 ACTTTTTGGGATTGTAGACACATGG 59.756 40.000 0.00 0.00 33.76 3.66
2224 6570 3.016736 GGGATTGTAGACACATGGGTTG 58.983 50.000 0.00 0.00 33.76 3.77
2345 6851 6.653320 ACGTGCATATTTGATATCCCGTTTAT 59.347 34.615 0.00 0.00 0.00 1.40
2354 6860 8.458573 TTTGATATCCCGTTTATTAATGCTGT 57.541 30.769 0.00 0.00 0.00 4.40
2355 6861 7.433708 TGATATCCCGTTTATTAATGCTGTG 57.566 36.000 0.00 0.00 0.00 3.66
2356 6862 7.220740 TGATATCCCGTTTATTAATGCTGTGA 58.779 34.615 0.00 0.00 0.00 3.58
2535 7051 4.809496 CTGGCGCAGGGCTTCCAT 62.809 66.667 10.83 0.00 42.94 3.41
2782 7298 2.970639 GTGTAGAGCAGCCCGTGA 59.029 61.111 0.00 0.00 0.00 4.35
2825 7341 4.500375 GCTCACCAAGAAGCTCACATTTTT 60.500 41.667 0.00 0.00 0.00 1.94
2826 7342 5.186996 TCACCAAGAAGCTCACATTTTTC 57.813 39.130 0.00 0.00 0.00 2.29
2833 7349 3.904136 AGCTCACATTTTTCCGAACTG 57.096 42.857 0.00 0.00 0.00 3.16
2901 7433 6.714356 TGACAGAGAGATGGTATCATAGTGAG 59.286 42.308 0.00 0.00 32.98 3.51
2902 7434 6.609876 ACAGAGAGATGGTATCATAGTGAGT 58.390 40.000 0.00 0.00 32.98 3.41
2903 7435 6.489700 ACAGAGAGATGGTATCATAGTGAGTG 59.510 42.308 0.00 0.00 32.98 3.51
2904 7436 6.009589 AGAGAGATGGTATCATAGTGAGTGG 58.990 44.000 0.00 0.00 32.98 4.00
2949 7481 4.038080 GGCTTTTGGCGACGGGTG 62.038 66.667 0.00 0.00 42.94 4.61
2952 7484 1.301401 CTTTTGGCGACGGGTGAGA 60.301 57.895 0.00 0.00 0.00 3.27
2955 7487 2.313051 TTTGGCGACGGGTGAGAACA 62.313 55.000 0.00 0.00 0.00 3.18
2962 7494 1.183030 ACGGGTGAGAACATGGACGA 61.183 55.000 0.00 0.00 0.00 4.20
2966 7498 1.798813 GGTGAGAACATGGACGACAAC 59.201 52.381 0.00 0.00 0.00 3.32
2967 7499 2.479837 GTGAGAACATGGACGACAACA 58.520 47.619 0.00 0.00 0.00 3.33
3020 7552 1.143838 AAGCATAGTCATCGCCGCA 59.856 52.632 0.00 0.00 0.00 5.69
3632 8164 1.500474 TCTACTGGATCTTGGCTGGG 58.500 55.000 0.00 0.00 0.00 4.45
3712 8244 0.322975 AAATCTGAGCAGCCAGTCGT 59.677 50.000 9.83 0.00 35.71 4.34
3739 8271 3.517296 TTAGGGCATCAACAACTGGAA 57.483 42.857 0.00 0.00 0.00 3.53
3759 8291 1.153249 CACAACGGTGTCCAGTGGT 60.153 57.895 1.16 0.00 40.24 4.16
3835 8367 9.899226 TTGTCGATATATATAGATGCATACTGC 57.101 33.333 0.00 0.00 45.29 4.40
3836 8368 8.515414 TGTCGATATATATAGATGCATACTGCC 58.485 37.037 0.00 0.00 44.23 4.85
3837 8369 7.694367 GTCGATATATATAGATGCATACTGCCG 59.306 40.741 0.00 0.00 44.23 5.69
3857 8399 6.119536 TGCCGGTTATGAAGAAACTCATAAT 58.880 36.000 1.90 0.00 45.44 1.28
3858 8400 6.038161 TGCCGGTTATGAAGAAACTCATAATG 59.962 38.462 1.90 5.79 45.44 1.90
3897 8439 8.110612 CAGTTAATCTTATCTTTGTGCTGTACG 58.889 37.037 0.00 0.00 0.00 3.67
3900 8442 6.648725 ATCTTATCTTTGTGCTGTACGTTC 57.351 37.500 0.00 0.00 0.00 3.95
3901 8443 4.619760 TCTTATCTTTGTGCTGTACGTTCG 59.380 41.667 0.00 0.00 0.00 3.95
3903 8445 2.811855 TCTTTGTGCTGTACGTTCGAA 58.188 42.857 0.00 0.00 0.00 3.71
3904 8446 2.536803 TCTTTGTGCTGTACGTTCGAAC 59.463 45.455 18.47 18.47 0.00 3.95
3905 8447 1.210870 TTGTGCTGTACGTTCGAACC 58.789 50.000 22.07 9.23 0.00 3.62
3906 8448 0.102663 TGTGCTGTACGTTCGAACCA 59.897 50.000 22.07 13.27 0.00 3.67
3936 8539 1.657804 AGGGAGGAACCGAAGAACAT 58.342 50.000 0.00 0.00 40.11 2.71
3991 8594 7.174107 AGCATAAAACTACTACTTTACGGGA 57.826 36.000 0.00 0.00 0.00 5.14
3994 8597 9.533253 GCATAAAACTACTACTTTACGGGATAA 57.467 33.333 0.00 0.00 0.00 1.75
4060 8663 0.402504 AATGGGTGGTCGGCTGTTTA 59.597 50.000 0.00 0.00 0.00 2.01
4154 8757 4.155644 TCCGTTAGTTGACCGTTTTGTTTT 59.844 37.500 0.00 0.00 0.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.810491 GCCAATGCGAACCAATTTATGATT 59.190 37.500 0.00 0.00 0.00 2.57
1 2 4.099881 AGCCAATGCGAACCAATTTATGAT 59.900 37.500 0.00 0.00 44.33 2.45
2 3 3.446873 AGCCAATGCGAACCAATTTATGA 59.553 39.130 0.00 0.00 44.33 2.15
3 4 3.784338 AGCCAATGCGAACCAATTTATG 58.216 40.909 0.00 0.00 44.33 1.90
4 5 5.509501 CCATAGCCAATGCGAACCAATTTAT 60.510 40.000 0.00 0.00 44.33 1.40
6 7 3.430651 CCATAGCCAATGCGAACCAATTT 60.431 43.478 0.00 0.00 44.33 1.82
7 8 2.101249 CCATAGCCAATGCGAACCAATT 59.899 45.455 0.00 0.00 44.33 2.32
8 9 1.682854 CCATAGCCAATGCGAACCAAT 59.317 47.619 0.00 0.00 44.33 3.16
9 10 1.102154 CCATAGCCAATGCGAACCAA 58.898 50.000 0.00 0.00 44.33 3.67
10 11 0.034574 ACCATAGCCAATGCGAACCA 60.035 50.000 0.00 0.00 44.33 3.67
11 12 0.381801 CACCATAGCCAATGCGAACC 59.618 55.000 0.00 0.00 44.33 3.62
12 13 0.248621 GCACCATAGCCAATGCGAAC 60.249 55.000 0.00 0.00 44.33 3.95
13 14 0.394216 AGCACCATAGCCAATGCGAA 60.394 50.000 0.00 0.00 42.98 4.70
15 16 1.357690 CAGCACCATAGCCAATGCG 59.642 57.895 0.00 0.00 42.98 4.73
16 17 1.737816 CCAGCACCATAGCCAATGC 59.262 57.895 0.00 0.00 38.39 3.56
17 18 0.106569 TCCCAGCACCATAGCCAATG 60.107 55.000 0.00 0.00 34.23 2.82
18 19 0.184451 CTCCCAGCACCATAGCCAAT 59.816 55.000 0.00 0.00 34.23 3.16
19 20 0.913934 TCTCCCAGCACCATAGCCAA 60.914 55.000 0.00 0.00 34.23 4.52
20 21 1.306911 TCTCCCAGCACCATAGCCA 60.307 57.895 0.00 0.00 34.23 4.75
21 22 1.341156 ACTCTCCCAGCACCATAGCC 61.341 60.000 0.00 0.00 34.23 3.93
22 23 1.342819 CTACTCTCCCAGCACCATAGC 59.657 57.143 0.00 0.00 0.00 2.97
23 24 2.950781 TCTACTCTCCCAGCACCATAG 58.049 52.381 0.00 0.00 0.00 2.23
24 25 3.234353 CATCTACTCTCCCAGCACCATA 58.766 50.000 0.00 0.00 0.00 2.74
25 26 2.045524 CATCTACTCTCCCAGCACCAT 58.954 52.381 0.00 0.00 0.00 3.55
26 27 1.489481 CATCTACTCTCCCAGCACCA 58.511 55.000 0.00 0.00 0.00 4.17
29 30 1.050988 GCCCATCTACTCTCCCAGCA 61.051 60.000 0.00 0.00 0.00 4.41
30 31 1.751563 GCCCATCTACTCTCCCAGC 59.248 63.158 0.00 0.00 0.00 4.85
31 32 0.468214 TCGCCCATCTACTCTCCCAG 60.468 60.000 0.00 0.00 0.00 4.45
32 33 0.188587 ATCGCCCATCTACTCTCCCA 59.811 55.000 0.00 0.00 0.00 4.37
33 34 0.605589 CATCGCCCATCTACTCTCCC 59.394 60.000 0.00 0.00 0.00 4.30
34 35 0.605589 CCATCGCCCATCTACTCTCC 59.394 60.000 0.00 0.00 0.00 3.71
35 36 1.000283 CACCATCGCCCATCTACTCTC 60.000 57.143 0.00 0.00 0.00 3.20
36 37 1.043816 CACCATCGCCCATCTACTCT 58.956 55.000 0.00 0.00 0.00 3.24
37 38 0.601311 GCACCATCGCCCATCTACTC 60.601 60.000 0.00 0.00 0.00 2.59
38 39 1.447643 GCACCATCGCCCATCTACT 59.552 57.895 0.00 0.00 0.00 2.57
68 69 2.430367 GCCCACGAACAACTCCCT 59.570 61.111 0.00 0.00 0.00 4.20
100 101 1.378646 TGGTCCGCTCGATGAGACT 60.379 57.895 0.00 0.00 0.00 3.24
104 105 1.179152 TTAACTGGTCCGCTCGATGA 58.821 50.000 0.00 0.00 0.00 2.92
113 114 2.004733 CGTCCGGATTTTAACTGGTCC 58.995 52.381 7.81 0.00 35.49 4.46
146 154 2.007608 GGTCCGGTTAGTGAAATCAGC 58.992 52.381 0.00 0.00 0.00 4.26
438 447 1.583967 CGCTCCGAGCACTTAGTCG 60.584 63.158 20.22 0.00 42.58 4.18
526 545 2.105128 CCTGTGATCCTCGTCGCC 59.895 66.667 0.00 0.00 0.00 5.54
537 556 1.915266 CCAGCTCTCCACCCTGTGA 60.915 63.158 0.00 0.00 35.23 3.58
541 560 0.907230 GAGAACCAGCTCTCCACCCT 60.907 60.000 0.00 0.00 36.60 4.34
542 561 1.599576 GAGAACCAGCTCTCCACCC 59.400 63.158 0.00 0.00 36.60 4.61
545 564 1.076727 TCCGAGAACCAGCTCTCCA 59.923 57.895 0.00 0.00 38.98 3.86
582 601 3.435186 GAGCACCTCCAAAGCCGC 61.435 66.667 0.00 0.00 0.00 6.53
584 603 1.172812 AAACGAGCACCTCCAAAGCC 61.173 55.000 0.00 0.00 0.00 4.35
585 604 0.668535 AAAACGAGCACCTCCAAAGC 59.331 50.000 0.00 0.00 0.00 3.51
586 605 1.266989 GGAAAACGAGCACCTCCAAAG 59.733 52.381 0.00 0.00 0.00 2.77
590 609 0.250338 ACAGGAAAACGAGCACCTCC 60.250 55.000 0.00 0.00 0.00 4.30
591 610 2.450609 TACAGGAAAACGAGCACCTC 57.549 50.000 0.00 0.00 0.00 3.85
592 611 3.418684 AATACAGGAAAACGAGCACCT 57.581 42.857 0.00 0.00 0.00 4.00
594 613 4.915667 GGAAAAATACAGGAAAACGAGCAC 59.084 41.667 0.00 0.00 0.00 4.40
599 618 4.381566 CGCTTGGAAAAATACAGGAAAACG 59.618 41.667 0.00 0.00 0.00 3.60
604 623 4.569162 CGTATCGCTTGGAAAAATACAGGA 59.431 41.667 0.00 0.00 0.00 3.86
605 624 4.331717 ACGTATCGCTTGGAAAAATACAGG 59.668 41.667 0.00 0.00 0.00 4.00
606 625 5.291128 AGACGTATCGCTTGGAAAAATACAG 59.709 40.000 0.00 0.00 0.00 2.74
607 626 5.172934 AGACGTATCGCTTGGAAAAATACA 58.827 37.500 0.00 0.00 0.00 2.29
608 627 5.713822 AGACGTATCGCTTGGAAAAATAC 57.286 39.130 0.00 0.00 0.00 1.89
610 629 5.063060 GTGTAGACGTATCGCTTGGAAAAAT 59.937 40.000 0.00 0.00 0.00 1.82
612 631 3.922240 GTGTAGACGTATCGCTTGGAAAA 59.078 43.478 0.00 0.00 0.00 2.29
615 634 1.402968 GGTGTAGACGTATCGCTTGGA 59.597 52.381 0.00 0.00 0.00 3.53
616 635 1.133598 TGGTGTAGACGTATCGCTTGG 59.866 52.381 0.00 0.00 0.00 3.61
617 636 2.554806 TGGTGTAGACGTATCGCTTG 57.445 50.000 0.00 0.00 0.00 4.01
619 638 1.814394 TGTTGGTGTAGACGTATCGCT 59.186 47.619 0.00 0.00 0.00 4.93
620 639 2.267188 TGTTGGTGTAGACGTATCGC 57.733 50.000 0.00 0.00 0.00 4.58
621 640 4.491924 GCATTTGTTGGTGTAGACGTATCG 60.492 45.833 0.00 0.00 0.00 2.92
622 641 4.491924 CGCATTTGTTGGTGTAGACGTATC 60.492 45.833 0.00 0.00 0.00 2.24
625 644 1.529438 CGCATTTGTTGGTGTAGACGT 59.471 47.619 0.00 0.00 0.00 4.34
626 645 1.795872 TCGCATTTGTTGGTGTAGACG 59.204 47.619 0.00 0.00 0.00 4.18
627 646 2.412847 GCTCGCATTTGTTGGTGTAGAC 60.413 50.000 0.00 0.00 0.00 2.59
631 650 1.032014 AAGCTCGCATTTGTTGGTGT 58.968 45.000 0.00 0.00 0.00 4.16
632 651 1.269206 ACAAGCTCGCATTTGTTGGTG 60.269 47.619 0.00 0.00 34.00 4.17
633 652 1.032014 ACAAGCTCGCATTTGTTGGT 58.968 45.000 0.00 0.00 34.00 3.67
634 653 2.987413 TACAAGCTCGCATTTGTTGG 57.013 45.000 2.53 0.00 38.41 3.77
635 654 4.229096 ACATTACAAGCTCGCATTTGTTG 58.771 39.130 2.53 0.05 38.41 3.33
636 655 4.503741 ACATTACAAGCTCGCATTTGTT 57.496 36.364 2.53 0.00 38.41 2.83
638 657 5.063944 AGTCTACATTACAAGCTCGCATTTG 59.936 40.000 0.00 0.00 0.00 2.32
639 658 5.178797 AGTCTACATTACAAGCTCGCATTT 58.821 37.500 0.00 0.00 0.00 2.32
640 659 4.759782 AGTCTACATTACAAGCTCGCATT 58.240 39.130 0.00 0.00 0.00 3.56
642 661 3.730963 CGAGTCTACATTACAAGCTCGCA 60.731 47.826 0.00 0.00 37.99 5.10
643 662 2.784380 CGAGTCTACATTACAAGCTCGC 59.216 50.000 0.00 0.00 37.99 5.03
644 663 4.029704 GTCGAGTCTACATTACAAGCTCG 58.970 47.826 0.00 0.00 43.60 5.03
645 664 4.029704 CGTCGAGTCTACATTACAAGCTC 58.970 47.826 0.00 0.00 0.00 4.09
647 666 3.784994 GTCGTCGAGTCTACATTACAAGC 59.215 47.826 0.00 0.00 0.00 4.01
648 667 4.341099 GGTCGTCGAGTCTACATTACAAG 58.659 47.826 0.00 0.00 0.00 3.16
649 668 3.181517 CGGTCGTCGAGTCTACATTACAA 60.182 47.826 0.00 0.00 42.43 2.41
650 669 2.349580 CGGTCGTCGAGTCTACATTACA 59.650 50.000 0.00 0.00 42.43 2.41
651 670 2.286067 CCGGTCGTCGAGTCTACATTAC 60.286 54.545 0.00 0.00 42.43 1.89
653 672 0.731417 CCGGTCGTCGAGTCTACATT 59.269 55.000 0.00 0.00 42.43 2.71
654 673 0.107993 TCCGGTCGTCGAGTCTACAT 60.108 55.000 0.00 0.00 42.43 2.29
657 676 0.738762 CACTCCGGTCGTCGAGTCTA 60.739 60.000 0.00 0.00 42.43 2.59
658 677 2.033755 CACTCCGGTCGTCGAGTCT 61.034 63.158 0.00 0.00 42.43 3.24
659 678 2.479650 CACTCCGGTCGTCGAGTC 59.520 66.667 0.00 0.00 42.43 3.36
661 680 4.477975 GGCACTCCGGTCGTCGAG 62.478 72.222 0.00 0.00 42.43 4.04
663 682 4.778415 CAGGCACTCCGGTCGTCG 62.778 72.222 0.00 0.00 34.60 5.12
664 683 4.436998 CCAGGCACTCCGGTCGTC 62.437 72.222 0.00 0.00 34.60 4.20
665 684 3.873679 TACCAGGCACTCCGGTCGT 62.874 63.158 0.00 0.00 39.10 4.34
667 686 1.255667 TTCTACCAGGCACTCCGGTC 61.256 60.000 0.00 0.00 39.10 4.79
668 687 1.229082 TTCTACCAGGCACTCCGGT 60.229 57.895 0.00 0.00 40.57 5.28
669 688 0.970937 TCTTCTACCAGGCACTCCGG 60.971 60.000 0.00 0.00 34.60 5.14
670 689 0.895530 TTCTTCTACCAGGCACTCCG 59.104 55.000 0.00 0.00 34.60 4.63
671 690 3.274288 CATTTCTTCTACCAGGCACTCC 58.726 50.000 0.00 0.00 34.60 3.85
672 691 2.680339 GCATTTCTTCTACCAGGCACTC 59.320 50.000 0.00 0.00 34.60 3.51
673 692 2.307098 AGCATTTCTTCTACCAGGCACT 59.693 45.455 0.00 0.00 43.88 4.40
674 693 2.716217 AGCATTTCTTCTACCAGGCAC 58.284 47.619 0.00 0.00 0.00 5.01
678 697 8.547967 TTGTAAACTAGCATTTCTTCTACCAG 57.452 34.615 0.00 0.00 0.00 4.00
680 699 9.384764 AGATTGTAAACTAGCATTTCTTCTACC 57.615 33.333 0.00 0.00 0.00 3.18
682 701 8.883731 GCAGATTGTAAACTAGCATTTCTTCTA 58.116 33.333 0.00 0.00 0.00 2.10
685 704 7.452880 TGCAGATTGTAAACTAGCATTTCTT 57.547 32.000 0.00 0.00 0.00 2.52
686 705 7.555554 AGATGCAGATTGTAAACTAGCATTTCT 59.444 33.333 0.00 0.00 40.86 2.52
688 707 7.466455 CGAGATGCAGATTGTAAACTAGCATTT 60.466 37.037 0.00 0.00 40.86 2.32
689 708 6.018425 CGAGATGCAGATTGTAAACTAGCATT 60.018 38.462 0.00 0.00 40.86 3.56
690 709 5.464722 CGAGATGCAGATTGTAAACTAGCAT 59.535 40.000 0.00 0.00 43.17 3.79
691 710 4.805719 CGAGATGCAGATTGTAAACTAGCA 59.194 41.667 0.00 0.00 34.78 3.49
693 712 5.321983 GCGAGATGCAGATTGTAAACTAG 57.678 43.478 0.00 0.00 45.45 2.57
707 726 0.678048 ACTTTTCAGGGGCGAGATGC 60.678 55.000 0.00 0.00 45.38 3.91
710 729 0.321671 CTCACTTTTCAGGGGCGAGA 59.678 55.000 0.00 0.00 0.00 4.04
711 730 0.674895 CCTCACTTTTCAGGGGCGAG 60.675 60.000 0.00 0.00 0.00 5.03
712 731 1.125093 TCCTCACTTTTCAGGGGCGA 61.125 55.000 0.00 0.00 0.00 5.54
713 732 0.674895 CTCCTCACTTTTCAGGGGCG 60.675 60.000 0.00 0.00 0.00 6.13
714 733 3.256281 CTCCTCACTTTTCAGGGGC 57.744 57.895 0.00 0.00 0.00 5.80
715 734 0.322906 GGCTCCTCACTTTTCAGGGG 60.323 60.000 0.00 0.00 32.69 4.79
716 735 0.401738 TGGCTCCTCACTTTTCAGGG 59.598 55.000 0.00 0.00 0.00 4.45
717 736 1.882623 GTTGGCTCCTCACTTTTCAGG 59.117 52.381 0.00 0.00 0.00 3.86
718 737 1.882623 GGTTGGCTCCTCACTTTTCAG 59.117 52.381 0.00 0.00 0.00 3.02
719 738 1.813862 CGGTTGGCTCCTCACTTTTCA 60.814 52.381 0.00 0.00 0.00 2.69
722 741 0.693049 ATCGGTTGGCTCCTCACTTT 59.307 50.000 0.00 0.00 0.00 2.66
723 742 0.250513 GATCGGTTGGCTCCTCACTT 59.749 55.000 0.00 0.00 0.00 3.16
725 744 0.460987 CAGATCGGTTGGCTCCTCAC 60.461 60.000 0.00 0.00 0.00 3.51
726 745 1.900351 CAGATCGGTTGGCTCCTCA 59.100 57.895 0.00 0.00 0.00 3.86
727 746 1.522580 GCAGATCGGTTGGCTCCTC 60.523 63.158 0.00 0.00 0.00 3.71
730 749 0.179062 AGATGCAGATCGGTTGGCTC 60.179 55.000 0.00 0.00 33.34 4.70
732 751 0.462581 TGAGATGCAGATCGGTTGGC 60.463 55.000 0.00 0.00 33.34 4.52
733 752 1.293924 GTGAGATGCAGATCGGTTGG 58.706 55.000 0.00 0.00 33.34 3.77
734 753 1.662629 GTGTGAGATGCAGATCGGTTG 59.337 52.381 0.00 0.00 33.34 3.77
735 754 1.552337 AGTGTGAGATGCAGATCGGTT 59.448 47.619 0.00 0.00 33.34 4.44
736 755 1.189752 AGTGTGAGATGCAGATCGGT 58.810 50.000 0.00 0.00 33.34 4.69
738 757 2.884827 TCAAGTGTGAGATGCAGATCG 58.115 47.619 0.00 0.00 33.34 3.69
739 758 5.353400 TGAAATCAAGTGTGAGATGCAGATC 59.647 40.000 0.00 0.00 37.14 2.75
740 759 5.123502 GTGAAATCAAGTGTGAGATGCAGAT 59.876 40.000 0.00 0.00 37.14 2.90
741 760 4.453478 GTGAAATCAAGTGTGAGATGCAGA 59.547 41.667 0.00 0.00 37.14 4.26
745 764 3.996363 TCCGTGAAATCAAGTGTGAGATG 59.004 43.478 0.00 0.00 37.14 2.90
747 766 3.744238 TCCGTGAAATCAAGTGTGAGA 57.256 42.857 0.00 0.00 37.14 3.27
749 768 3.536570 TGTTCCGTGAAATCAAGTGTGA 58.463 40.909 0.00 0.00 38.41 3.58
750 769 3.961477 TGTTCCGTGAAATCAAGTGTG 57.039 42.857 0.00 0.00 0.00 3.82
752 771 3.236816 GCATGTTCCGTGAAATCAAGTG 58.763 45.455 0.00 0.00 0.00 3.16
756 775 2.198827 AGGCATGTTCCGTGAAATCA 57.801 45.000 0.00 0.00 0.00 2.57
760 779 2.083774 GATCAAGGCATGTTCCGTGAA 58.916 47.619 10.93 0.00 45.21 3.18
761 780 1.678728 GGATCAAGGCATGTTCCGTGA 60.679 52.381 9.66 9.66 45.90 4.35
762 781 0.734889 GGATCAAGGCATGTTCCGTG 59.265 55.000 4.25 0.00 37.97 4.94
766 785 2.421424 GAGTGTGGATCAAGGCATGTTC 59.579 50.000 0.00 0.00 0.00 3.18
767 786 2.224843 TGAGTGTGGATCAAGGCATGTT 60.225 45.455 0.00 0.00 0.00 2.71
768 787 1.352017 TGAGTGTGGATCAAGGCATGT 59.648 47.619 0.00 0.00 0.00 3.21
769 788 1.741706 GTGAGTGTGGATCAAGGCATG 59.258 52.381 0.00 0.00 0.00 4.06
770 789 1.352017 TGTGAGTGTGGATCAAGGCAT 59.648 47.619 0.00 0.00 0.00 4.40
771 790 0.764271 TGTGAGTGTGGATCAAGGCA 59.236 50.000 0.00 0.00 0.00 4.75
773 792 3.480470 ACTTTGTGAGTGTGGATCAAGG 58.520 45.455 0.00 0.00 37.17 3.61
775 794 3.876914 GTGACTTTGTGAGTGTGGATCAA 59.123 43.478 0.00 0.00 39.19 2.57
776 795 3.118445 TGTGACTTTGTGAGTGTGGATCA 60.118 43.478 0.00 0.00 39.19 2.92
777 796 3.466836 TGTGACTTTGTGAGTGTGGATC 58.533 45.455 0.00 0.00 39.19 3.36
778 797 3.558931 TGTGACTTTGTGAGTGTGGAT 57.441 42.857 0.00 0.00 39.19 3.41
779 798 3.342377 TTGTGACTTTGTGAGTGTGGA 57.658 42.857 0.00 0.00 39.19 4.02
780 799 5.749596 TTATTGTGACTTTGTGAGTGTGG 57.250 39.130 0.00 0.00 39.19 4.17
781 800 8.011673 CACTATTATTGTGACTTTGTGAGTGTG 58.988 37.037 0.65 0.00 39.19 3.82
782 801 7.173218 CCACTATTATTGTGACTTTGTGAGTGT 59.827 37.037 8.27 0.00 39.19 3.55
783 802 7.361201 CCCACTATTATTGTGACTTTGTGAGTG 60.361 40.741 8.27 0.00 39.19 3.51
784 803 6.655003 CCCACTATTATTGTGACTTTGTGAGT 59.345 38.462 8.27 0.00 42.70 3.41
790 809 7.266905 ACTACCCCACTATTATTGTGACTTT 57.733 36.000 8.27 0.00 37.60 2.66
791 810 6.886178 ACTACCCCACTATTATTGTGACTT 57.114 37.500 8.27 0.00 37.60 3.01
792 811 6.886178 AACTACCCCACTATTATTGTGACT 57.114 37.500 8.27 0.00 37.60 3.41
803 822 7.510001 TCGATGGAATTAATAACTACCCCACTA 59.490 37.037 0.00 0.00 0.00 2.74
804 823 6.328148 TCGATGGAATTAATAACTACCCCACT 59.672 38.462 0.00 0.00 0.00 4.00
805 824 6.527423 TCGATGGAATTAATAACTACCCCAC 58.473 40.000 0.00 0.00 0.00 4.61
806 825 6.750660 TCGATGGAATTAATAACTACCCCA 57.249 37.500 0.00 0.00 0.00 4.96
807 826 8.512138 CAAATCGATGGAATTAATAACTACCCC 58.488 37.037 0.00 0.00 0.00 4.95
808 827 8.512138 CCAAATCGATGGAATTAATAACTACCC 58.488 37.037 0.00 0.00 43.54 3.69
809 828 9.280174 TCCAAATCGATGGAATTAATAACTACC 57.720 33.333 5.25 0.00 46.36 3.18
824 843 1.103398 GGGGCCTGTCCAAATCGATG 61.103 60.000 0.84 0.00 36.21 3.84
825 844 1.227383 GGGGCCTGTCCAAATCGAT 59.773 57.895 0.84 0.00 36.21 3.59
827 846 1.000896 AAGGGGCCTGTCCAAATCG 60.001 57.895 0.84 0.00 36.21 3.34
836 855 1.225704 GTGATGGAGAAGGGGCCTG 59.774 63.158 0.84 0.00 0.00 4.85
838 857 2.190578 CGTGATGGAGAAGGGGCC 59.809 66.667 0.00 0.00 0.00 5.80
839 858 2.514824 GCGTGATGGAGAAGGGGC 60.515 66.667 0.00 0.00 0.00 5.80
840 859 2.202932 CGCGTGATGGAGAAGGGG 60.203 66.667 0.00 0.00 0.00 4.79
841 860 1.227089 CTCGCGTGATGGAGAAGGG 60.227 63.158 5.77 0.00 31.90 3.95
842 861 1.880340 GCTCGCGTGATGGAGAAGG 60.880 63.158 13.13 0.00 31.90 3.46
845 864 3.068064 TGGCTCGCGTGATGGAGA 61.068 61.111 13.13 0.00 31.90 3.71
846 865 2.887568 GTGGCTCGCGTGATGGAG 60.888 66.667 13.13 0.00 0.00 3.86
847 866 4.794439 CGTGGCTCGCGTGATGGA 62.794 66.667 13.13 0.00 32.40 3.41
855 874 3.365291 TACCATCCACGTGGCTCGC 62.365 63.158 30.25 0.00 43.27 5.03
856 875 1.226974 CTACCATCCACGTGGCTCG 60.227 63.158 30.25 15.96 43.27 5.03
857 876 1.108776 TACTACCATCCACGTGGCTC 58.891 55.000 30.25 0.00 43.27 4.70
858 877 1.789523 ATACTACCATCCACGTGGCT 58.210 50.000 30.25 18.65 43.27 4.75
859 878 3.955650 ATATACTACCATCCACGTGGC 57.044 47.619 30.25 0.00 43.27 5.01
860 879 9.932207 TTTATTAATATACTACCATCCACGTGG 57.068 33.333 29.26 29.26 45.04 4.94
885 904 3.214328 CTGCTCTGGGCGGTATATTTTT 58.786 45.455 0.00 0.00 45.43 1.94
887 906 2.550830 CTGCTCTGGGCGGTATATTT 57.449 50.000 0.00 0.00 45.43 1.40
917 936 0.674895 GCCTTCTGCTGGTGTACCTG 60.675 60.000 2.32 3.11 36.87 4.00
922 3150 1.526917 GTGTGCCTTCTGCTGGTGT 60.527 57.895 0.00 0.00 42.00 4.16
924 3152 1.526917 GTGTGTGCCTTCTGCTGGT 60.527 57.895 0.00 0.00 42.00 4.00
945 3173 2.224185 TGCCGGTGCGTGATCTATTATT 60.224 45.455 1.90 0.00 41.78 1.40
946 3174 1.343142 TGCCGGTGCGTGATCTATTAT 59.657 47.619 1.90 0.00 41.78 1.28
947 3175 0.747852 TGCCGGTGCGTGATCTATTA 59.252 50.000 1.90 0.00 41.78 0.98
1099 3342 5.144359 ACTTTTAAACACTCATTAAGCGCG 58.856 37.500 0.00 0.00 0.00 6.86
1103 3346 8.778358 AGCTCAGACTTTTAAACACTCATTAAG 58.222 33.333 0.00 0.00 0.00 1.85
1105 3348 9.772973 TTAGCTCAGACTTTTAAACACTCATTA 57.227 29.630 0.00 0.00 0.00 1.90
1106 3349 8.560374 GTTAGCTCAGACTTTTAAACACTCATT 58.440 33.333 0.00 0.00 0.00 2.57
1108 3351 6.482308 GGTTAGCTCAGACTTTTAAACACTCA 59.518 38.462 0.00 0.00 0.00 3.41
1109 3352 6.482308 TGGTTAGCTCAGACTTTTAAACACTC 59.518 38.462 0.00 0.00 0.00 3.51
1110 3353 6.354130 TGGTTAGCTCAGACTTTTAAACACT 58.646 36.000 0.00 0.00 0.00 3.55
1261 3539 4.054825 GTCCCGGACCACGCGTTA 62.055 66.667 10.22 0.00 42.52 3.18
1413 3691 2.380941 TGGATCATGCTCCAAACATGG 58.619 47.619 15.87 0.00 42.36 3.66
1428 3706 3.730761 GCGCGGCATGGATGGATC 61.731 66.667 8.83 0.00 0.00 3.36
1477 3755 4.406003 AGAACCATTTGTAGCGGAGTAGAT 59.594 41.667 0.00 0.00 0.00 1.98
1478 3756 3.767673 AGAACCATTTGTAGCGGAGTAGA 59.232 43.478 0.00 0.00 0.00 2.59
1479 3757 4.124851 AGAACCATTTGTAGCGGAGTAG 57.875 45.455 0.00 0.00 0.00 2.57
1481 3759 4.755266 ATAGAACCATTTGTAGCGGAGT 57.245 40.909 0.00 0.00 0.00 3.85
1482 3760 5.844004 AGTATAGAACCATTTGTAGCGGAG 58.156 41.667 0.00 0.00 0.00 4.63
1484 3762 5.628193 CGTAGTATAGAACCATTTGTAGCGG 59.372 44.000 0.00 0.00 0.00 5.52
1487 3765 9.028185 GGTTTCGTAGTATAGAACCATTTGTAG 57.972 37.037 0.00 0.00 0.00 2.74
1489 3767 7.618137 AGGTTTCGTAGTATAGAACCATTTGT 58.382 34.615 6.37 0.00 0.00 2.83
1490 3768 8.488651 AAGGTTTCGTAGTATAGAACCATTTG 57.511 34.615 6.37 0.00 0.00 2.32
1492 3770 8.943002 CAAAAGGTTTCGTAGTATAGAACCATT 58.057 33.333 6.37 0.00 0.00 3.16
1497 3775 6.013466 ACCCCAAAAGGTTTCGTAGTATAGAA 60.013 38.462 0.00 0.00 36.44 2.10
1499 3777 5.737860 ACCCCAAAAGGTTTCGTAGTATAG 58.262 41.667 0.00 0.00 36.44 1.31
1501 3779 4.645863 ACCCCAAAAGGTTTCGTAGTAT 57.354 40.909 0.00 0.00 36.44 2.12
1525 3858 0.389426 CTTTTGCTGTGGCTGGATGC 60.389 55.000 0.00 0.00 39.59 3.91
1578 3911 2.541556 GAAGGATAGGCGACAAGACAC 58.458 52.381 0.00 0.00 0.00 3.67
1583 3916 2.093890 TGTACGAAGGATAGGCGACAA 58.906 47.619 0.00 0.00 0.00 3.18
1585 3918 1.596464 CGTGTACGAAGGATAGGCGAC 60.596 57.143 0.00 0.00 43.02 5.19
1605 3941 2.288458 TCGGTCCACACATTTTTCGTTC 59.712 45.455 0.00 0.00 0.00 3.95
1611 3947 2.073816 GATCGTCGGTCCACACATTTT 58.926 47.619 0.00 0.00 0.00 1.82
1642 3978 4.452733 GCTACCCCGCGCTCTGTT 62.453 66.667 5.56 0.00 0.00 3.16
1677 4014 2.437281 GGGTGTCTCATCTGTCCATCAT 59.563 50.000 0.00 0.00 0.00 2.45
1678 4015 1.833630 GGGTGTCTCATCTGTCCATCA 59.166 52.381 0.00 0.00 0.00 3.07
1679 4016 1.833630 TGGGTGTCTCATCTGTCCATC 59.166 52.381 0.00 0.00 0.00 3.51
1681 4018 1.556451 CATGGGTGTCTCATCTGTCCA 59.444 52.381 0.00 0.00 0.00 4.02
1682 4019 1.556911 ACATGGGTGTCTCATCTGTCC 59.443 52.381 0.00 0.00 31.41 4.02
1696 4043 0.879839 TACGCATCGCATGACATGGG 60.880 55.000 22.91 22.91 43.79 4.00
1703 4050 1.274770 CAGCAGTACGCATCGCATG 59.725 57.895 11.30 0.00 46.13 4.06
1707 4054 0.248661 ACTAGCAGCAGTACGCATCG 60.249 55.000 11.30 2.34 46.13 3.84
1736 4083 8.476447 AGAATAGCATCCACAGAGATATATGTG 58.524 37.037 8.12 8.12 45.10 3.21
1741 4088 8.435187 TCAAAAGAATAGCATCCACAGAGATAT 58.565 33.333 0.00 0.00 0.00 1.63
1742 4089 7.795047 TCAAAAGAATAGCATCCACAGAGATA 58.205 34.615 0.00 0.00 0.00 1.98
1743 4090 6.656902 TCAAAAGAATAGCATCCACAGAGAT 58.343 36.000 0.00 0.00 0.00 2.75
1744 4091 6.053632 TCAAAAGAATAGCATCCACAGAGA 57.946 37.500 0.00 0.00 0.00 3.10
1745 4092 6.766944 AGATCAAAAGAATAGCATCCACAGAG 59.233 38.462 0.00 0.00 0.00 3.35
1747 4094 6.939132 AGATCAAAAGAATAGCATCCACAG 57.061 37.500 0.00 0.00 0.00 3.66
1748 4095 6.405065 GCAAGATCAAAAGAATAGCATCCACA 60.405 38.462 0.00 0.00 0.00 4.17
1749 4096 5.975939 GCAAGATCAAAAGAATAGCATCCAC 59.024 40.000 0.00 0.00 0.00 4.02
1750 4097 5.220912 CGCAAGATCAAAAGAATAGCATCCA 60.221 40.000 0.00 0.00 43.02 3.41
1752 4099 5.814783 ACGCAAGATCAAAAGAATAGCATC 58.185 37.500 0.00 0.00 43.62 3.91
1753 4100 5.824904 ACGCAAGATCAAAAGAATAGCAT 57.175 34.783 0.00 0.00 43.62 3.79
1754 4101 6.106003 TCTACGCAAGATCAAAAGAATAGCA 58.894 36.000 0.00 0.00 43.62 3.49
1755 4102 6.477033 TCTCTACGCAAGATCAAAAGAATAGC 59.523 38.462 0.00 0.00 43.62 2.97
1756 4103 7.993821 TCTCTACGCAAGATCAAAAGAATAG 57.006 36.000 0.00 0.00 43.62 1.73
1757 4104 8.948631 AATCTCTACGCAAGATCAAAAGAATA 57.051 30.769 0.00 0.00 43.62 1.75
1759 4106 6.035005 CGAATCTCTACGCAAGATCAAAAGAA 59.965 38.462 0.00 0.00 43.62 2.52
1761 4108 5.289675 ACGAATCTCTACGCAAGATCAAAAG 59.710 40.000 0.00 0.00 43.62 2.27
1762 4109 5.168569 ACGAATCTCTACGCAAGATCAAAA 58.831 37.500 0.00 0.00 43.62 2.44
1763 4110 4.744570 ACGAATCTCTACGCAAGATCAAA 58.255 39.130 0.00 0.00 43.62 2.69
1764 4111 4.371855 ACGAATCTCTACGCAAGATCAA 57.628 40.909 0.00 0.00 43.62 2.57
1765 4112 4.334481 TGTACGAATCTCTACGCAAGATCA 59.666 41.667 0.00 0.00 43.62 2.92
1766 4113 4.845387 TGTACGAATCTCTACGCAAGATC 58.155 43.478 0.00 0.00 43.62 2.75
1767 4114 4.895224 TGTACGAATCTCTACGCAAGAT 57.105 40.909 0.00 0.00 43.62 2.40
1768 4115 4.690184 TTGTACGAATCTCTACGCAAGA 57.310 40.909 0.00 0.00 43.62 3.02
1804 4823 3.949754 CCCAATCAAGTGACATAGTGCAT 59.050 43.478 0.00 0.00 0.00 3.96
1805 4824 3.008923 TCCCAATCAAGTGACATAGTGCA 59.991 43.478 0.00 0.00 0.00 4.57
1806 4825 3.375299 GTCCCAATCAAGTGACATAGTGC 59.625 47.826 0.00 0.00 0.00 4.40
1811 4830 3.245371 ACCATGTCCCAATCAAGTGACAT 60.245 43.478 0.00 0.00 46.41 3.06
1812 4831 2.108075 ACCATGTCCCAATCAAGTGACA 59.892 45.455 0.00 0.00 41.52 3.58
1813 4832 2.795329 ACCATGTCCCAATCAAGTGAC 58.205 47.619 0.00 0.00 0.00 3.67
1814 4833 3.524095 AACCATGTCCCAATCAAGTGA 57.476 42.857 0.00 0.00 0.00 3.41
1817 4836 5.256474 AGACTTAACCATGTCCCAATCAAG 58.744 41.667 0.00 0.00 34.02 3.02
1825 4844 4.537135 TGACTGAGACTTAACCATGTCC 57.463 45.455 0.00 0.00 34.02 4.02
1841 4871 4.452455 GTGTGGTTAGGTCTCAATTGACTG 59.548 45.833 3.38 0.00 37.16 3.51
1842 4872 4.348168 AGTGTGGTTAGGTCTCAATTGACT 59.652 41.667 3.38 3.12 37.16 3.41
1844 4874 4.974645 AGTGTGGTTAGGTCTCAATTGA 57.025 40.909 8.12 8.12 0.00 2.57
1846 4876 5.535030 GGAAAAGTGTGGTTAGGTCTCAATT 59.465 40.000 0.00 0.00 0.00 2.32
1847 4877 5.070685 GGAAAAGTGTGGTTAGGTCTCAAT 58.929 41.667 0.00 0.00 0.00 2.57
1848 4878 4.165372 AGGAAAAGTGTGGTTAGGTCTCAA 59.835 41.667 0.00 0.00 0.00 3.02
1851 4881 5.152934 TCTAGGAAAAGTGTGGTTAGGTCT 58.847 41.667 0.00 0.00 0.00 3.85
1852 4882 5.245526 TCTCTAGGAAAAGTGTGGTTAGGTC 59.754 44.000 0.00 0.00 0.00 3.85
1853 4883 5.152934 TCTCTAGGAAAAGTGTGGTTAGGT 58.847 41.667 0.00 0.00 0.00 3.08
1855 4885 6.591750 TCTCTCTAGGAAAAGTGTGGTTAG 57.408 41.667 0.00 0.00 0.00 2.34
1856 4886 5.047235 GCTCTCTCTAGGAAAAGTGTGGTTA 60.047 44.000 0.00 0.00 0.00 2.85
1857 4887 4.262678 GCTCTCTCTAGGAAAAGTGTGGTT 60.263 45.833 0.00 0.00 0.00 3.67
1858 4888 3.259625 GCTCTCTCTAGGAAAAGTGTGGT 59.740 47.826 0.00 0.00 0.00 4.16
1859 4889 3.513515 AGCTCTCTCTAGGAAAAGTGTGG 59.486 47.826 0.00 0.00 0.00 4.17
1861 4891 5.576128 AGTAGCTCTCTCTAGGAAAAGTGT 58.424 41.667 0.00 0.00 0.00 3.55
1862 4892 5.067283 GGAGTAGCTCTCTCTAGGAAAAGTG 59.933 48.000 15.33 0.00 42.40 3.16
1863 4893 5.198207 GGAGTAGCTCTCTCTAGGAAAAGT 58.802 45.833 15.33 0.00 42.40 2.66
1865 4895 4.538738 GGGAGTAGCTCTCTCTAGGAAAA 58.461 47.826 15.33 0.00 40.34 2.29
1866 4896 4.173290 GGGAGTAGCTCTCTCTAGGAAA 57.827 50.000 15.33 0.00 40.34 3.13
1867 4897 3.868619 GGGAGTAGCTCTCTCTAGGAA 57.131 52.381 15.33 0.00 40.34 3.36
1875 5180 1.026584 GAACGGAGGGAGTAGCTCTC 58.973 60.000 0.00 0.00 43.82 3.20
1877 5182 0.683504 TGGAACGGAGGGAGTAGCTC 60.684 60.000 0.00 0.00 0.00 4.09
1880 5185 6.415206 TTTATTATGGAACGGAGGGAGTAG 57.585 41.667 0.00 0.00 0.00 2.57
1903 5209 7.017651 CCCTCCTTCCCATAATATAAGAGTGTT 59.982 40.741 0.00 0.00 0.00 3.32
1906 5212 6.032693 CCCCTCCTTCCCATAATATAAGAGT 58.967 44.000 0.00 0.00 0.00 3.24
1907 5213 5.430089 CCCCCTCCTTCCCATAATATAAGAG 59.570 48.000 0.00 0.00 0.00 2.85
1914 5220 2.255649 ACTACCCCCTCCTTCCCATAAT 59.744 50.000 0.00 0.00 0.00 1.28
1917 5223 1.336347 TACTACCCCCTCCTTCCCAT 58.664 55.000 0.00 0.00 0.00 4.00
1923 5229 2.361504 CCCTTGAATACTACCCCCTCCT 60.362 54.545 0.00 0.00 0.00 3.69
1925 5231 2.055579 CCCCTTGAATACTACCCCCTC 58.944 57.143 0.00 0.00 0.00 4.30
1930 5236 7.331089 AGGATATTTCCCCTTGAATACTACC 57.669 40.000 0.00 0.00 43.76 3.18
1936 5242 8.560903 GGTATCATAGGATATTTCCCCTTGAAT 58.439 37.037 0.00 0.00 43.76 2.57
1937 5243 7.519355 TGGTATCATAGGATATTTCCCCTTGAA 59.481 37.037 0.00 0.00 43.76 2.69
1938 5244 7.028760 TGGTATCATAGGATATTTCCCCTTGA 58.971 38.462 0.00 0.93 43.76 3.02
1939 5245 7.270832 TGGTATCATAGGATATTTCCCCTTG 57.729 40.000 0.00 0.00 43.76 3.61
1940 5246 6.448387 CCTGGTATCATAGGATATTTCCCCTT 59.552 42.308 0.00 0.00 43.76 3.95
1941 5247 5.973124 CCTGGTATCATAGGATATTTCCCCT 59.027 44.000 0.00 0.00 43.76 4.79
1942 5248 5.731678 ACCTGGTATCATAGGATATTTCCCC 59.268 44.000 0.00 0.00 43.76 4.81
1943 5249 6.893020 ACCTGGTATCATAGGATATTTCCC 57.107 41.667 0.00 0.00 43.76 3.97
1944 5250 8.375493 TGTACCTGGTATCATAGGATATTTCC 57.625 38.462 10.23 0.00 42.96 3.13
1971 6304 8.480643 TTTTCGACACATGTAAATTTGGTTTT 57.519 26.923 0.00 0.00 0.00 2.43
1972 6305 8.655651 ATTTTCGACACATGTAAATTTGGTTT 57.344 26.923 0.00 0.00 0.00 3.27
1973 6306 8.141268 AGATTTTCGACACATGTAAATTTGGTT 58.859 29.630 0.00 0.00 0.00 3.67
1974 6307 7.657336 AGATTTTCGACACATGTAAATTTGGT 58.343 30.769 0.00 0.00 0.00 3.67
1975 6308 8.519492 AAGATTTTCGACACATGTAAATTTGG 57.481 30.769 0.00 0.00 0.00 3.28
2025 6371 9.099454 GAACTTTTTAGGGACAGTAGACATATG 57.901 37.037 0.00 0.00 0.00 1.78
2030 6376 6.756221 TCTGAACTTTTTAGGGACAGTAGAC 58.244 40.000 0.00 0.00 0.00 2.59
2037 6383 8.942338 AATTTTGTTCTGAACTTTTTAGGGAC 57.058 30.769 20.18 0.00 0.00 4.46
2055 6401 7.490962 TCTCAGTGTGTATTTCGAATTTTGT 57.509 32.000 0.00 0.00 0.00 2.83
2088 6434 8.593945 TTTCTGGCACTATTCATCCTATTTTT 57.406 30.769 0.00 0.00 0.00 1.94
2089 6435 8.593945 TTTTCTGGCACTATTCATCCTATTTT 57.406 30.769 0.00 0.00 0.00 1.82
2090 6436 8.593945 TTTTTCTGGCACTATTCATCCTATTT 57.406 30.769 0.00 0.00 0.00 1.40
2091 6437 8.773033 ATTTTTCTGGCACTATTCATCCTATT 57.227 30.769 0.00 0.00 0.00 1.73
2092 6438 9.289782 GTATTTTTCTGGCACTATTCATCCTAT 57.710 33.333 0.00 0.00 0.00 2.57
2093 6439 8.494433 AGTATTTTTCTGGCACTATTCATCCTA 58.506 33.333 0.00 0.00 0.00 2.94
2103 6449 5.476599 TGTGCATTAGTATTTTTCTGGCACT 59.523 36.000 13.17 0.00 46.63 4.40
2107 6453 9.421806 TCATTTTGTGCATTAGTATTTTTCTGG 57.578 29.630 0.00 0.00 0.00 3.86
2116 6462 6.875948 ACAGTGTCATTTTGTGCATTAGTA 57.124 33.333 0.00 0.00 0.00 1.82
2117 6463 5.772825 ACAGTGTCATTTTGTGCATTAGT 57.227 34.783 0.00 0.00 0.00 2.24
2120 6466 4.805192 GTGAACAGTGTCATTTTGTGCATT 59.195 37.500 0.00 0.00 33.21 3.56
2124 6470 4.741185 CCATGTGAACAGTGTCATTTTGTG 59.259 41.667 0.00 0.00 0.00 3.33
2126 6472 4.300803 CCCATGTGAACAGTGTCATTTTG 58.699 43.478 0.00 0.00 0.00 2.44
2138 6484 1.280457 AGAGAGGTCCCCATGTGAAC 58.720 55.000 0.00 0.00 0.00 3.18
2145 6491 4.601857 AGAAACATAAAAGAGAGGTCCCCA 59.398 41.667 0.00 0.00 0.00 4.96
2181 6527 7.994194 TCCCAAAAAGTTCAAATCCAAAATTG 58.006 30.769 0.00 0.00 0.00 2.32
2191 6537 7.093727 TGTGTCTACAATCCCAAAAAGTTCAAA 60.094 33.333 0.00 0.00 32.88 2.69
2202 6548 2.274542 ACCCATGTGTCTACAATCCCA 58.725 47.619 0.00 0.00 40.84 4.37
2305 6652 2.867368 TGCACGTGAAAACGTTACAGAT 59.133 40.909 22.23 0.00 44.63 2.90
2334 6839 7.717436 TCATTCACAGCATTAATAAACGGGATA 59.283 33.333 0.00 0.00 0.00 2.59
2345 6851 3.376234 GCTCTGCTCATTCACAGCATTAA 59.624 43.478 0.00 0.00 45.81 1.40
2351 6857 1.738350 CCAAGCTCTGCTCATTCACAG 59.262 52.381 0.00 0.00 38.25 3.66
2354 6860 0.986527 TCCCAAGCTCTGCTCATTCA 59.013 50.000 0.00 0.00 38.25 2.57
2355 6861 2.119801 TTCCCAAGCTCTGCTCATTC 57.880 50.000 0.00 0.00 38.25 2.67
2356 6862 2.376109 CATTCCCAAGCTCTGCTCATT 58.624 47.619 0.00 0.00 38.25 2.57
2535 7051 4.876701 GCCTCCGAACATGGCATA 57.123 55.556 0.00 0.00 45.46 3.14
2659 7175 4.219115 ACATTCTCCTCGATGTAGGTGAT 58.781 43.478 0.00 0.00 38.57 3.06
2782 7298 2.555547 GCGCCAAGGAACTGCTGTT 61.556 57.895 8.91 8.91 40.86 3.16
2825 7341 1.080093 GTGGCATCGTCAGTTCGGA 60.080 57.895 0.00 0.00 0.00 4.55
2826 7342 2.100631 GGTGGCATCGTCAGTTCGG 61.101 63.158 0.00 0.00 0.00 4.30
2833 7349 1.005037 TGTCAGTGGTGGCATCGTC 60.005 57.895 0.00 0.00 31.64 4.20
2901 7433 1.470051 AAACATCCGCCATTACCCAC 58.530 50.000 0.00 0.00 0.00 4.61
2902 7434 2.223803 AAAACATCCGCCATTACCCA 57.776 45.000 0.00 0.00 0.00 4.51
2903 7435 3.697542 AGTAAAAACATCCGCCATTACCC 59.302 43.478 0.00 0.00 0.00 3.69
2904 7436 4.976224 AGTAAAAACATCCGCCATTACC 57.024 40.909 0.00 0.00 0.00 2.85
2947 7479 2.476619 CTGTTGTCGTCCATGTTCTCAC 59.523 50.000 0.00 0.00 0.00 3.51
2949 7481 2.069273 CCTGTTGTCGTCCATGTTCTC 58.931 52.381 0.00 0.00 0.00 2.87
2952 7484 2.218603 GAACCTGTTGTCGTCCATGTT 58.781 47.619 0.00 0.00 0.00 2.71
2955 7487 1.002087 GAGGAACCTGTTGTCGTCCAT 59.998 52.381 0.00 0.00 0.00 3.41
2962 7494 2.104281 AGCTTAACGAGGAACCTGTTGT 59.896 45.455 14.24 2.93 0.00 3.32
2966 7498 1.079503 GCAGCTTAACGAGGAACCTG 58.920 55.000 0.00 0.00 0.00 4.00
2967 7499 0.977395 AGCAGCTTAACGAGGAACCT 59.023 50.000 0.00 0.00 0.00 3.50
3488 8020 3.197790 CCCACGCCGAAGATGCTG 61.198 66.667 0.00 0.00 0.00 4.41
3632 8164 4.400961 ACCTCCAAGGCGCTGAGC 62.401 66.667 7.64 0.00 39.63 4.26
3739 8271 1.523711 CACTGGACACCGTTGTGCT 60.524 57.895 6.13 0.00 46.86 4.40
3832 8364 3.334691 TGAGTTTCTTCATAACCGGCAG 58.665 45.455 0.00 0.00 0.00 4.85
3833 8365 3.410631 TGAGTTTCTTCATAACCGGCA 57.589 42.857 0.00 0.00 0.00 5.69
3834 8366 6.038271 ACATTATGAGTTTCTTCATAACCGGC 59.962 38.462 0.00 0.00 46.87 6.13
3835 8367 7.553881 ACATTATGAGTTTCTTCATAACCGG 57.446 36.000 0.00 0.00 46.87 5.28
3871 8413 8.110612 CGTACAGCACAAAGATAAGATTAACTG 58.889 37.037 0.00 0.00 0.00 3.16
3873 8415 7.960793 ACGTACAGCACAAAGATAAGATTAAC 58.039 34.615 0.00 0.00 0.00 2.01
3879 8421 4.619760 TCGAACGTACAGCACAAAGATAAG 59.380 41.667 0.00 0.00 0.00 1.73
3897 8439 2.810028 TTTGTGTCGTTGGTTCGAAC 57.190 45.000 20.14 20.14 41.47 3.95
3900 8442 1.268335 CCCTTTTGTGTCGTTGGTTCG 60.268 52.381 0.00 0.00 0.00 3.95
3901 8443 2.018515 TCCCTTTTGTGTCGTTGGTTC 58.981 47.619 0.00 0.00 0.00 3.62
3903 8445 1.675552 CTCCCTTTTGTGTCGTTGGT 58.324 50.000 0.00 0.00 0.00 3.67
3904 8446 0.951558 CCTCCCTTTTGTGTCGTTGG 59.048 55.000 0.00 0.00 0.00 3.77
3905 8447 1.961793 TCCTCCCTTTTGTGTCGTTG 58.038 50.000 0.00 0.00 0.00 4.10
3906 8448 2.294979 GTTCCTCCCTTTTGTGTCGTT 58.705 47.619 0.00 0.00 0.00 3.85
4039 8642 0.402504 AACAGCCGACCACCCATTTA 59.597 50.000 0.00 0.00 0.00 1.40
4154 8757 4.323409 GGGTCCCACAATAAGTTAACGGTA 60.323 45.833 1.78 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.