Multiple sequence alignment - TraesCS3D01G374800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G374800 chr3D 100.000 3476 0 0 1 3476 488120292 488116817 0.000000e+00 6420.0
1 TraesCS3D01G374800 chr3D 95.544 1526 65 1 953 2475 488234622 488236147 0.000000e+00 2438.0
2 TraesCS3D01G374800 chr3D 83.654 312 39 7 1 303 19293560 19293252 2.040000e-72 283.0
3 TraesCS3D01G374800 chr3D 78.005 441 78 11 1960 2392 456597287 456596858 3.440000e-65 259.0
4 TraesCS3D01G374800 chr3B 91.881 2759 129 38 540 3276 650954969 650952284 0.000000e+00 3766.0
5 TraesCS3D01G374800 chr3B 94.889 1526 75 1 953 2475 651257017 651258542 0.000000e+00 2383.0
6 TraesCS3D01G374800 chr3B 77.412 425 91 4 1960 2383 603452351 603451931 7.450000e-62 248.0
7 TraesCS3D01G374800 chr3B 89.326 178 10 2 3298 3475 650926955 650926787 7.560000e-52 215.0
8 TraesCS3D01G374800 chr3A 96.075 1860 39 7 699 2526 631729597 631727740 0.000000e+00 3000.0
9 TraesCS3D01G374800 chr3A 95.609 1526 63 2 953 2475 631775732 631777256 0.000000e+00 2444.0
10 TraesCS3D01G374800 chr3A 85.784 408 20 14 2610 3013 631727496 631727123 6.990000e-107 398.0
11 TraesCS3D01G374800 chr3A 84.597 409 36 11 3039 3445 631727019 631726636 7.040000e-102 381.0
12 TraesCS3D01G374800 chr3A 85.855 304 35 3 1 296 528524345 528524042 2.010000e-82 316.0
13 TraesCS3D01G374800 chr3A 85.000 220 25 6 2979 3198 653313806 653313595 2.100000e-52 217.0
14 TraesCS3D01G374800 chr3A 95.385 65 3 0 2533 2597 631727601 631727537 1.710000e-18 104.0
15 TraesCS3D01G374800 chr5D 83.482 896 140 8 1057 1948 540240497 540239606 0.000000e+00 828.0
16 TraesCS3D01G374800 chr5D 81.440 722 125 9 1419 2134 464457868 464458586 1.800000e-162 582.0
17 TraesCS3D01G374800 chr5D 82.623 305 49 3 2 303 451179787 451180090 2.060000e-67 267.0
18 TraesCS3D01G374800 chr4A 83.259 896 142 8 1057 1948 628090303 628089412 0.000000e+00 817.0
19 TraesCS3D01G374800 chr4A 85.648 216 23 4 2983 3198 708433895 708433688 1.620000e-53 220.0
20 TraesCS3D01G374800 chr5B 82.832 897 144 10 1057 1948 682538799 682537908 0.000000e+00 795.0
21 TraesCS3D01G374800 chr5B 82.566 717 118 7 1423 2134 571535879 571536593 2.950000e-175 625.0
22 TraesCS3D01G374800 chr2A 79.154 638 103 10 2 611 137258593 137257958 6.940000e-112 414.0
23 TraesCS3D01G374800 chr4D 84.281 299 43 2 1 295 3331513 3331811 4.390000e-74 289.0
24 TraesCS3D01G374800 chr4D 81.672 311 53 3 1 307 12590829 12591139 4.450000e-64 255.0
25 TraesCS3D01G374800 chr1A 83.654 312 40 8 1 307 577507838 577507533 2.040000e-72 283.0
26 TraesCS3D01G374800 chr1A 82.594 293 47 3 7 296 167142853 167143144 4.450000e-64 255.0
27 TraesCS3D01G374800 chr1A 85.981 214 24 4 2985 3198 371175129 371174922 1.260000e-54 224.0
28 TraesCS3D01G374800 chr1A 81.746 252 40 6 1057 1305 490411649 490411897 4.550000e-49 206.0
29 TraesCS3D01G374800 chr1D 83.893 298 43 3 1 294 416091736 416091440 2.640000e-71 279.0
30 TraesCS3D01G374800 chr5A 86.512 215 24 3 2984 3198 654849371 654849162 7.500000e-57 231.0
31 TraesCS3D01G374800 chr6B 84.753 223 28 3 2977 3198 260601316 260601099 5.840000e-53 219.0
32 TraesCS3D01G374800 chr6B 85.581 215 23 5 2982 3195 508994890 508995097 5.840000e-53 219.0
33 TraesCS3D01G374800 chr6D 85.253 217 25 4 2983 3198 382344200 382343990 2.100000e-52 217.0
34 TraesCS3D01G374800 chr2B 85.185 216 27 2 2983 3198 766171371 766171161 2.100000e-52 217.0
35 TraesCS3D01G374800 chr7B 84.071 226 29 4 2975 3198 394827506 394827286 9.770000e-51 211.0
36 TraesCS3D01G374800 chr2D 78.676 136 15 9 2016 2137 26481152 26481287 1.030000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G374800 chr3D 488116817 488120292 3475 True 6420.00 6420 100.00000 1 3476 1 chr3D.!!$R3 3475
1 TraesCS3D01G374800 chr3D 488234622 488236147 1525 False 2438.00 2438 95.54400 953 2475 1 chr3D.!!$F1 1522
2 TraesCS3D01G374800 chr3B 650952284 650954969 2685 True 3766.00 3766 91.88100 540 3276 1 chr3B.!!$R3 2736
3 TraesCS3D01G374800 chr3B 651257017 651258542 1525 False 2383.00 2383 94.88900 953 2475 1 chr3B.!!$F1 1522
4 TraesCS3D01G374800 chr3A 631775732 631777256 1524 False 2444.00 2444 95.60900 953 2475 1 chr3A.!!$F1 1522
5 TraesCS3D01G374800 chr3A 631726636 631729597 2961 True 970.75 3000 90.46025 699 3445 4 chr3A.!!$R3 2746
6 TraesCS3D01G374800 chr5D 540239606 540240497 891 True 828.00 828 83.48200 1057 1948 1 chr5D.!!$R1 891
7 TraesCS3D01G374800 chr5D 464457868 464458586 718 False 582.00 582 81.44000 1419 2134 1 chr5D.!!$F2 715
8 TraesCS3D01G374800 chr4A 628089412 628090303 891 True 817.00 817 83.25900 1057 1948 1 chr4A.!!$R1 891
9 TraesCS3D01G374800 chr5B 682537908 682538799 891 True 795.00 795 82.83200 1057 1948 1 chr5B.!!$R1 891
10 TraesCS3D01G374800 chr5B 571535879 571536593 714 False 625.00 625 82.56600 1423 2134 1 chr5B.!!$F1 711
11 TraesCS3D01G374800 chr2A 137257958 137258593 635 True 414.00 414 79.15400 2 611 1 chr2A.!!$R1 609

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
594 599 0.028770 CTTGAGCGTAGAGAGGAGCG 59.971 60.0 0.0 0.0 34.34 5.03 F
855 884 0.037975 GTAGCTGGGACCGAAAACGA 60.038 55.0 0.0 0.0 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1515 1595 0.411452 AGGAGAAGGTGAGCCAGAGA 59.589 55.000 0.00 0.0 37.19 3.10 R
2605 2839 1.137872 GGGAGATTCTCAGCGACATGT 59.862 52.381 15.36 0.0 31.08 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.722706 CGATGCGTCATATGAAATGCCG 60.723 50.000 18.05 13.45 0.00 5.69
22 23 1.946745 TGCGTCATATGAAATGCCGA 58.053 45.000 18.05 3.65 0.00 5.54
26 27 2.092681 CGTCATATGAAATGCCGATCCG 59.907 50.000 7.07 0.00 0.00 4.18
27 28 3.067106 GTCATATGAAATGCCGATCCGT 58.933 45.455 7.07 0.00 0.00 4.69
57 58 3.775654 CCACTGGTCCCTCGAGCC 61.776 72.222 6.99 3.51 35.55 4.70
60 61 1.613630 ACTGGTCCCTCGAGCCAAT 60.614 57.895 6.99 0.00 35.55 3.16
67 70 1.817099 CCTCGAGCCAATGCACCTC 60.817 63.158 6.99 0.00 41.13 3.85
75 78 1.134907 GCCAATGCACCTCCAAGAATG 60.135 52.381 0.00 0.00 37.47 2.67
77 80 2.165030 CCAATGCACCTCCAAGAATGAC 59.835 50.000 0.00 0.00 0.00 3.06
82 85 1.452108 CCTCCAAGAATGACGCCCC 60.452 63.158 0.00 0.00 0.00 5.80
84 87 2.824041 CCAAGAATGACGCCCCCG 60.824 66.667 0.00 0.00 41.14 5.73
104 109 3.668386 GGGGGAAACACAAGAGCG 58.332 61.111 0.00 0.00 32.66 5.03
105 110 1.228154 GGGGGAAACACAAGAGCGT 60.228 57.895 0.00 0.00 32.66 5.07
107 112 1.566018 GGGGAAACACAAGAGCGTCG 61.566 60.000 0.00 0.00 0.00 5.12
112 117 3.470567 CACAAGAGCGTCGCCGTC 61.471 66.667 14.86 5.93 36.15 4.79
128 133 1.069204 CCGTCATCCCATCGACTGATT 59.931 52.381 0.00 0.00 30.49 2.57
133 138 3.324846 TCATCCCATCGACTGATTTAGGG 59.675 47.826 0.00 0.00 36.91 3.53
134 139 2.759355 TCCCATCGACTGATTTAGGGT 58.241 47.619 0.00 0.00 36.91 4.34
137 142 3.877508 CCCATCGACTGATTTAGGGTTTC 59.122 47.826 0.00 0.00 32.91 2.78
158 163 3.111939 CGGAGGTAGCGGACAGAG 58.888 66.667 0.00 0.00 0.00 3.35
159 164 1.451567 CGGAGGTAGCGGACAGAGA 60.452 63.158 0.00 0.00 0.00 3.10
160 165 0.820074 CGGAGGTAGCGGACAGAGAT 60.820 60.000 0.00 0.00 0.00 2.75
161 166 0.955905 GGAGGTAGCGGACAGAGATC 59.044 60.000 0.00 0.00 0.00 2.75
162 167 1.477923 GGAGGTAGCGGACAGAGATCT 60.478 57.143 0.00 0.00 0.00 2.75
163 168 2.303175 GAGGTAGCGGACAGAGATCTT 58.697 52.381 0.00 0.00 0.00 2.40
164 169 2.028130 AGGTAGCGGACAGAGATCTTG 58.972 52.381 0.00 0.00 0.00 3.02
165 170 2.025155 GGTAGCGGACAGAGATCTTGA 58.975 52.381 0.00 0.00 0.00 3.02
166 171 2.034053 GGTAGCGGACAGAGATCTTGAG 59.966 54.545 0.00 0.00 0.00 3.02
167 172 0.459489 AGCGGACAGAGATCTTGAGC 59.541 55.000 0.00 6.66 0.00 4.26
168 173 0.459489 GCGGACAGAGATCTTGAGCT 59.541 55.000 0.00 0.00 0.00 4.09
169 174 1.134848 GCGGACAGAGATCTTGAGCTT 60.135 52.381 0.00 0.00 0.00 3.74
170 175 2.808244 CGGACAGAGATCTTGAGCTTC 58.192 52.381 0.00 0.00 0.00 3.86
171 176 2.426738 CGGACAGAGATCTTGAGCTTCT 59.573 50.000 0.00 0.00 0.00 2.85
172 177 3.489059 CGGACAGAGATCTTGAGCTTCTC 60.489 52.174 0.00 4.47 36.88 2.87
173 178 3.181476 GGACAGAGATCTTGAGCTTCTCC 60.181 52.174 8.44 0.00 37.24 3.71
174 179 2.765699 ACAGAGATCTTGAGCTTCTCCC 59.234 50.000 8.44 0.00 37.24 4.30
175 180 2.102925 CAGAGATCTTGAGCTTCTCCCC 59.897 54.545 8.44 0.00 37.24 4.81
176 181 2.114616 GAGATCTTGAGCTTCTCCCCA 58.885 52.381 0.00 0.00 31.66 4.96
177 182 2.102925 GAGATCTTGAGCTTCTCCCCAG 59.897 54.545 0.00 0.00 31.66 4.45
178 183 0.545646 ATCTTGAGCTTCTCCCCAGC 59.454 55.000 0.00 0.00 37.56 4.85
179 184 1.449246 CTTGAGCTTCTCCCCAGCG 60.449 63.158 0.00 0.00 42.55 5.18
180 185 1.892819 CTTGAGCTTCTCCCCAGCGA 61.893 60.000 0.00 0.00 42.55 4.93
181 186 1.267574 TTGAGCTTCTCCCCAGCGAT 61.268 55.000 0.00 0.00 42.55 4.58
182 187 1.227497 GAGCTTCTCCCCAGCGATG 60.227 63.158 0.00 0.00 42.55 3.84
183 188 2.899339 GCTTCTCCCCAGCGATGC 60.899 66.667 0.00 0.00 0.00 3.91
184 189 2.203126 CTTCTCCCCAGCGATGCC 60.203 66.667 0.00 0.00 0.00 4.40
185 190 2.688666 TTCTCCCCAGCGATGCCT 60.689 61.111 0.00 0.00 0.00 4.75
186 191 2.262774 CTTCTCCCCAGCGATGCCTT 62.263 60.000 0.00 0.00 0.00 4.35
187 192 2.203126 CTCCCCAGCGATGCCTTC 60.203 66.667 0.00 0.00 0.00 3.46
188 193 3.008517 TCCCCAGCGATGCCTTCA 61.009 61.111 0.00 0.00 0.00 3.02
189 194 2.045045 CCCCAGCGATGCCTTCAA 60.045 61.111 0.00 0.00 0.00 2.69
190 195 2.117156 CCCCAGCGATGCCTTCAAG 61.117 63.158 0.00 0.00 0.00 3.02
191 196 1.078214 CCCAGCGATGCCTTCAAGA 60.078 57.895 0.00 0.00 0.00 3.02
192 197 0.677731 CCCAGCGATGCCTTCAAGAA 60.678 55.000 0.00 0.00 0.00 2.52
193 198 0.731417 CCAGCGATGCCTTCAAGAAG 59.269 55.000 0.00 2.83 38.14 2.85
202 207 3.123674 CTTCAAGAAGGGGACGACG 57.876 57.895 1.86 0.00 34.87 5.12
203 208 1.005394 TTCAAGAAGGGGACGACGC 60.005 57.895 0.00 0.00 0.00 5.19
204 209 1.750341 TTCAAGAAGGGGACGACGCA 61.750 55.000 4.20 0.00 33.80 5.24
205 210 1.738099 CAAGAAGGGGACGACGCAG 60.738 63.158 4.20 0.00 33.80 5.18
206 211 1.906824 AAGAAGGGGACGACGCAGA 60.907 57.895 4.20 0.00 33.80 4.26
207 212 1.469335 AAGAAGGGGACGACGCAGAA 61.469 55.000 4.20 0.00 33.80 3.02
208 213 1.446272 GAAGGGGACGACGCAGAAG 60.446 63.158 4.20 0.00 33.80 2.85
209 214 1.874345 GAAGGGGACGACGCAGAAGA 61.874 60.000 4.20 0.00 33.80 2.87
210 215 1.469335 AAGGGGACGACGCAGAAGAA 61.469 55.000 4.20 0.00 33.80 2.52
211 216 1.737008 GGGGACGACGCAGAAGAAC 60.737 63.158 4.20 0.00 0.00 3.01
212 217 2.087009 GGGACGACGCAGAAGAACG 61.087 63.158 0.00 0.00 0.00 3.95
213 218 2.717809 GGACGACGCAGAAGAACGC 61.718 63.158 0.00 0.00 0.00 4.84
214 219 2.717809 GACGACGCAGAAGAACGCC 61.718 63.158 0.00 0.00 0.00 5.68
215 220 3.827784 CGACGCAGAAGAACGCCG 61.828 66.667 0.00 0.00 0.00 6.46
216 221 2.430244 GACGCAGAAGAACGCCGA 60.430 61.111 0.00 0.00 0.00 5.54
217 222 2.717809 GACGCAGAAGAACGCCGAC 61.718 63.158 0.00 0.00 0.00 4.79
218 223 2.733218 CGCAGAAGAACGCCGACA 60.733 61.111 0.00 0.00 0.00 4.35
219 224 2.094659 CGCAGAAGAACGCCGACAT 61.095 57.895 0.00 0.00 0.00 3.06
220 225 1.710339 GCAGAAGAACGCCGACATC 59.290 57.895 0.00 0.00 0.00 3.06
221 226 1.991430 CAGAAGAACGCCGACATCG 59.009 57.895 0.00 0.00 39.44 3.84
222 227 1.805945 AGAAGAACGCCGACATCGC 60.806 57.895 0.00 0.00 38.18 4.58
223 228 2.799540 GAAGAACGCCGACATCGCC 61.800 63.158 0.00 0.00 38.18 5.54
224 229 3.583276 AAGAACGCCGACATCGCCA 62.583 57.895 0.00 0.00 38.18 5.69
225 230 3.554692 GAACGCCGACATCGCCAG 61.555 66.667 0.00 0.00 38.18 4.85
230 235 3.197790 CCGACATCGCCAGCCTTG 61.198 66.667 0.00 0.00 38.18 3.61
239 244 3.595819 CCAGCCTTGGCAACTAGC 58.404 61.111 14.54 0.00 44.65 3.42
257 262 3.562635 CGAGAGCGGGGTTTTCAC 58.437 61.111 0.00 0.00 0.00 3.18
258 263 2.033194 CGAGAGCGGGGTTTTCACC 61.033 63.158 0.00 0.00 43.37 4.02
259 264 1.375326 GAGAGCGGGGTTTTCACCT 59.625 57.895 0.00 0.00 43.65 4.00
260 265 0.955919 GAGAGCGGGGTTTTCACCTG 60.956 60.000 0.00 0.00 43.65 4.00
261 266 1.971695 GAGCGGGGTTTTCACCTGG 60.972 63.158 0.00 0.00 43.65 4.45
262 267 2.114411 GCGGGGTTTTCACCTGGA 59.886 61.111 0.00 0.00 43.65 3.86
263 268 1.304134 GCGGGGTTTTCACCTGGAT 60.304 57.895 0.00 0.00 43.65 3.41
264 269 1.313091 GCGGGGTTTTCACCTGGATC 61.313 60.000 0.00 0.00 43.65 3.36
265 270 0.328258 CGGGGTTTTCACCTGGATCT 59.672 55.000 0.00 0.00 43.65 2.75
266 271 1.839424 GGGGTTTTCACCTGGATCTG 58.161 55.000 0.00 0.00 43.65 2.90
267 272 1.177401 GGGTTTTCACCTGGATCTGC 58.823 55.000 0.00 0.00 43.65 4.26
268 273 1.272147 GGGTTTTCACCTGGATCTGCT 60.272 52.381 0.00 0.00 43.65 4.24
269 274 2.087646 GGTTTTCACCTGGATCTGCTC 58.912 52.381 0.00 0.00 40.44 4.26
270 275 1.734465 GTTTTCACCTGGATCTGCTCG 59.266 52.381 0.00 0.00 0.00 5.03
271 276 1.266178 TTTCACCTGGATCTGCTCGA 58.734 50.000 0.00 0.00 0.00 4.04
272 277 0.532573 TTCACCTGGATCTGCTCGAC 59.467 55.000 0.00 0.00 0.00 4.20
273 278 0.611896 TCACCTGGATCTGCTCGACA 60.612 55.000 0.00 0.00 0.00 4.35
274 279 0.247460 CACCTGGATCTGCTCGACAA 59.753 55.000 0.00 0.00 0.00 3.18
275 280 0.534412 ACCTGGATCTGCTCGACAAG 59.466 55.000 0.00 0.00 0.00 3.16
283 288 4.177229 GCTCGACAAGCCTCAGTC 57.823 61.111 0.00 0.00 45.92 3.51
284 289 1.446966 GCTCGACAAGCCTCAGTCC 60.447 63.158 0.00 0.00 45.92 3.85
285 290 1.967535 CTCGACAAGCCTCAGTCCA 59.032 57.895 0.00 0.00 0.00 4.02
286 291 0.108898 CTCGACAAGCCTCAGTCCAG 60.109 60.000 0.00 0.00 0.00 3.86
287 292 1.739562 CGACAAGCCTCAGTCCAGC 60.740 63.158 0.00 0.00 0.00 4.85
288 293 1.372683 GACAAGCCTCAGTCCAGCA 59.627 57.895 0.00 0.00 0.00 4.41
289 294 0.035630 GACAAGCCTCAGTCCAGCAT 60.036 55.000 0.00 0.00 0.00 3.79
290 295 0.035630 ACAAGCCTCAGTCCAGCATC 60.036 55.000 0.00 0.00 0.00 3.91
291 296 0.252479 CAAGCCTCAGTCCAGCATCT 59.748 55.000 0.00 0.00 0.00 2.90
292 297 0.990374 AAGCCTCAGTCCAGCATCTT 59.010 50.000 0.00 0.00 0.00 2.40
293 298 0.252479 AGCCTCAGTCCAGCATCTTG 59.748 55.000 0.00 0.00 0.00 3.02
294 299 0.035630 GCCTCAGTCCAGCATCTTGT 60.036 55.000 0.00 0.00 0.00 3.16
295 300 1.735386 CCTCAGTCCAGCATCTTGTG 58.265 55.000 0.00 0.00 0.00 3.33
296 301 1.678123 CCTCAGTCCAGCATCTTGTGG 60.678 57.143 0.00 0.00 34.87 4.17
297 302 1.277273 CTCAGTCCAGCATCTTGTGGA 59.723 52.381 0.00 0.00 40.72 4.02
300 305 1.296392 TCCAGCATCTTGTGGACCG 59.704 57.895 0.00 0.00 37.96 4.79
301 306 1.746615 CCAGCATCTTGTGGACCGG 60.747 63.158 0.00 0.00 35.67 5.28
302 307 1.296392 CAGCATCTTGTGGACCGGA 59.704 57.895 9.46 0.00 0.00 5.14
303 308 0.107508 CAGCATCTTGTGGACCGGAT 60.108 55.000 9.46 0.00 0.00 4.18
304 309 0.179000 AGCATCTTGTGGACCGGATC 59.821 55.000 9.46 1.18 0.00 3.36
305 310 1.154205 GCATCTTGTGGACCGGATCG 61.154 60.000 9.46 0.00 0.00 3.69
306 311 1.144057 ATCTTGTGGACCGGATCGC 59.856 57.895 9.46 6.95 0.00 4.58
307 312 1.330655 ATCTTGTGGACCGGATCGCT 61.331 55.000 9.46 0.00 0.00 4.93
308 313 1.519455 CTTGTGGACCGGATCGCTC 60.519 63.158 9.46 0.00 0.00 5.03
309 314 3.350909 TTGTGGACCGGATCGCTCG 62.351 63.158 9.46 0.00 0.00 5.03
323 328 4.435436 CTCGCCGCAGTGCTACCA 62.435 66.667 14.33 0.00 0.00 3.25
324 329 4.735132 TCGCCGCAGTGCTACCAC 62.735 66.667 14.33 0.00 42.39 4.16
327 332 4.778143 CCGCAGTGCTACCACCCC 62.778 72.222 14.33 0.00 43.09 4.95
328 333 4.778143 CGCAGTGCTACCACCCCC 62.778 72.222 14.33 0.00 43.09 5.40
329 334 3.646715 GCAGTGCTACCACCCCCA 61.647 66.667 8.18 0.00 43.09 4.96
330 335 2.351276 CAGTGCTACCACCCCCAC 59.649 66.667 0.00 0.00 43.09 4.61
331 336 3.319198 AGTGCTACCACCCCCACG 61.319 66.667 0.00 0.00 43.09 4.94
349 354 4.598894 CCGCTCGCCCAGATCCAG 62.599 72.222 0.00 0.00 0.00 3.86
350 355 3.531207 CGCTCGCCCAGATCCAGA 61.531 66.667 0.00 0.00 0.00 3.86
351 356 2.107953 GCTCGCCCAGATCCAGAC 59.892 66.667 0.00 0.00 0.00 3.51
352 357 2.725312 GCTCGCCCAGATCCAGACA 61.725 63.158 0.00 0.00 0.00 3.41
353 358 1.142748 CTCGCCCAGATCCAGACAC 59.857 63.158 0.00 0.00 0.00 3.67
354 359 2.202797 CGCCCAGATCCAGACACG 60.203 66.667 0.00 0.00 0.00 4.49
355 360 2.512515 GCCCAGATCCAGACACGC 60.513 66.667 0.00 0.00 0.00 5.34
356 361 2.981302 CCCAGATCCAGACACGCA 59.019 61.111 0.00 0.00 0.00 5.24
357 362 1.448540 CCCAGATCCAGACACGCAC 60.449 63.158 0.00 0.00 0.00 5.34
358 363 1.807165 CCAGATCCAGACACGCACG 60.807 63.158 0.00 0.00 0.00 5.34
359 364 1.080501 CAGATCCAGACACGCACGT 60.081 57.895 0.00 0.00 0.00 4.49
360 365 1.073216 CAGATCCAGACACGCACGTC 61.073 60.000 0.00 0.00 36.08 4.34
362 367 0.798771 GATCCAGACACGCACGTCTC 60.799 60.000 2.10 0.00 44.49 3.36
363 368 2.529005 ATCCAGACACGCACGTCTCG 62.529 60.000 2.10 5.32 44.49 4.04
364 369 3.461982 CAGACACGCACGTCTCGC 61.462 66.667 6.64 0.00 44.49 5.03
365 370 4.702081 AGACACGCACGTCTCGCC 62.702 66.667 6.64 0.00 42.70 5.54
375 380 2.813908 GTCTCGCCGCCGTCAAAT 60.814 61.111 0.00 0.00 35.54 2.32
376 381 2.508439 TCTCGCCGCCGTCAAATC 60.508 61.111 0.00 0.00 35.54 2.17
377 382 3.913573 CTCGCCGCCGTCAAATCG 61.914 66.667 0.00 0.00 35.54 3.34
378 383 4.728102 TCGCCGCCGTCAAATCGT 62.728 61.111 0.00 0.00 35.54 3.73
379 384 4.204891 CGCCGCCGTCAAATCGTC 62.205 66.667 0.00 0.00 0.00 4.20
380 385 4.204891 GCCGCCGTCAAATCGTCG 62.205 66.667 0.00 0.00 32.16 5.12
381 386 3.550992 CCGCCGTCAAATCGTCGG 61.551 66.667 0.00 0.00 44.93 4.79
384 389 2.433491 CCGTCAAATCGTCGGCCA 60.433 61.111 2.24 0.00 39.44 5.36
385 390 1.813753 CCGTCAAATCGTCGGCCAT 60.814 57.895 2.24 0.00 39.44 4.40
386 391 1.348250 CGTCAAATCGTCGGCCATG 59.652 57.895 2.24 0.00 0.00 3.66
387 392 1.721487 GTCAAATCGTCGGCCATGG 59.279 57.895 7.63 7.63 0.00 3.66
388 393 2.112198 TCAAATCGTCGGCCATGGC 61.112 57.895 29.47 29.47 41.06 4.40
435 440 2.601367 CCACCAAGGCACCCCAAG 60.601 66.667 0.00 0.00 0.00 3.61
436 441 2.601367 CACCAAGGCACCCCAAGG 60.601 66.667 0.00 0.00 40.04 3.61
437 442 4.621087 ACCAAGGCACCCCAAGGC 62.621 66.667 0.00 0.00 36.11 4.35
466 471 2.026301 CGAATCTCGGACGAGGCC 59.974 66.667 20.17 0.00 42.20 5.19
467 472 2.417936 GAATCTCGGACGAGGCCC 59.582 66.667 20.17 7.05 42.20 5.80
468 473 2.363795 AATCTCGGACGAGGCCCA 60.364 61.111 20.17 2.80 42.20 5.36
469 474 2.356818 GAATCTCGGACGAGGCCCAG 62.357 65.000 20.17 0.00 42.20 4.45
495 500 3.123674 CCGGCGGCATAATAGAGTC 57.876 57.895 15.42 0.00 0.00 3.36
496 501 0.389948 CCGGCGGCATAATAGAGTCC 60.390 60.000 15.42 0.00 0.00 3.85
497 502 0.389948 CGGCGGCATAATAGAGTCCC 60.390 60.000 10.53 0.00 0.00 4.46
498 503 0.389948 GGCGGCATAATAGAGTCCCG 60.390 60.000 3.07 0.00 38.76 5.14
499 504 0.389948 GCGGCATAATAGAGTCCCGG 60.390 60.000 0.00 0.00 36.44 5.73
500 505 0.966920 CGGCATAATAGAGTCCCGGT 59.033 55.000 0.00 0.00 32.58 5.28
501 506 1.067776 CGGCATAATAGAGTCCCGGTC 60.068 57.143 0.00 0.00 32.58 4.79
502 507 1.968493 GGCATAATAGAGTCCCGGTCA 59.032 52.381 0.00 0.00 0.00 4.02
503 508 2.028930 GGCATAATAGAGTCCCGGTCAG 60.029 54.545 0.00 0.00 0.00 3.51
504 509 2.628657 GCATAATAGAGTCCCGGTCAGT 59.371 50.000 0.00 0.00 0.00 3.41
505 510 3.305471 GCATAATAGAGTCCCGGTCAGTC 60.305 52.174 0.00 0.00 0.00 3.51
506 511 1.777941 AATAGAGTCCCGGTCAGTCC 58.222 55.000 0.00 0.00 0.00 3.85
507 512 0.629596 ATAGAGTCCCGGTCAGTCCA 59.370 55.000 0.00 0.00 35.57 4.02
508 513 0.629596 TAGAGTCCCGGTCAGTCCAT 59.370 55.000 0.00 0.00 35.57 3.41
509 514 0.684805 AGAGTCCCGGTCAGTCCATC 60.685 60.000 0.00 0.00 35.57 3.51
510 515 1.677637 GAGTCCCGGTCAGTCCATCC 61.678 65.000 0.00 0.00 35.57 3.51
511 516 2.365105 TCCCGGTCAGTCCATCCC 60.365 66.667 0.00 0.00 35.57 3.85
512 517 2.365635 CCCGGTCAGTCCATCCCT 60.366 66.667 0.00 0.00 35.57 4.20
513 518 2.435693 CCCGGTCAGTCCATCCCTC 61.436 68.421 0.00 0.00 35.57 4.30
514 519 1.381872 CCGGTCAGTCCATCCCTCT 60.382 63.158 0.00 0.00 35.57 3.69
515 520 1.680522 CCGGTCAGTCCATCCCTCTG 61.681 65.000 0.00 0.00 35.57 3.35
516 521 1.524482 GGTCAGTCCATCCCTCTGC 59.476 63.158 0.00 0.00 35.97 4.26
517 522 1.267574 GGTCAGTCCATCCCTCTGCA 61.268 60.000 0.00 0.00 35.97 4.41
518 523 0.615331 GTCAGTCCATCCCTCTGCAA 59.385 55.000 0.00 0.00 0.00 4.08
519 524 0.615331 TCAGTCCATCCCTCTGCAAC 59.385 55.000 0.00 0.00 0.00 4.17
520 525 0.393537 CAGTCCATCCCTCTGCAACC 60.394 60.000 0.00 0.00 0.00 3.77
521 526 1.077429 GTCCATCCCTCTGCAACCC 60.077 63.158 0.00 0.00 0.00 4.11
522 527 2.124570 CCATCCCTCTGCAACCCG 60.125 66.667 0.00 0.00 0.00 5.28
523 528 2.669133 CCATCCCTCTGCAACCCGA 61.669 63.158 0.00 0.00 0.00 5.14
524 529 1.299648 CATCCCTCTGCAACCCGAA 59.700 57.895 0.00 0.00 0.00 4.30
525 530 1.026718 CATCCCTCTGCAACCCGAAC 61.027 60.000 0.00 0.00 0.00 3.95
526 531 2.521958 ATCCCTCTGCAACCCGAACG 62.522 60.000 0.00 0.00 0.00 3.95
527 532 2.742372 CCTCTGCAACCCGAACGG 60.742 66.667 6.25 6.25 37.81 4.44
589 594 1.850377 CATGGCTTGAGCGTAGAGAG 58.150 55.000 0.00 0.00 43.26 3.20
594 599 0.028770 CTTGAGCGTAGAGAGGAGCG 59.971 60.000 0.00 0.00 34.34 5.03
601 606 2.690734 TAGAGAGGAGCGAGCCCCA 61.691 63.158 0.00 0.00 0.00 4.96
665 679 4.162690 GCGGCGAGGGAAGGACAT 62.163 66.667 12.98 0.00 0.00 3.06
666 680 2.202932 CGGCGAGGGAAGGACATG 60.203 66.667 0.00 0.00 0.00 3.21
667 681 2.990479 GGCGAGGGAAGGACATGT 59.010 61.111 0.00 0.00 0.00 3.21
668 682 1.450312 GGCGAGGGAAGGACATGTG 60.450 63.158 1.15 0.00 0.00 3.21
669 683 2.109126 GCGAGGGAAGGACATGTGC 61.109 63.158 9.70 9.70 0.00 4.57
752 773 4.467769 ACATCTTTGGCATAGGATCCAAG 58.532 43.478 15.82 6.96 42.62 3.61
781 802 2.035626 CCCACCGGCCAGTTCATT 59.964 61.111 0.00 0.00 0.00 2.57
855 884 0.037975 GTAGCTGGGACCGAAAACGA 60.038 55.000 0.00 0.00 0.00 3.85
877 906 5.333952 CGATCGACCTATATATAAGACCGGC 60.334 48.000 10.26 0.00 0.00 6.13
890 919 4.796231 CCGGCAGCGTCGCTTAGT 62.796 66.667 19.06 0.00 36.40 2.24
964 1000 1.006043 ACACTACCTCTAGCTGCAGGA 59.994 52.381 17.12 3.21 33.52 3.86
1029 1065 0.300491 CCGCGGATTACAACATGTCG 59.700 55.000 24.07 0.00 0.00 4.35
1032 1068 1.062002 GCGGATTACAACATGTCGGTG 59.938 52.381 12.07 4.18 0.00 4.94
1186 1222 1.566018 GAAGAAGTGGGCCGTGAACG 61.566 60.000 0.00 0.00 39.44 3.95
1515 1595 0.467384 CCTGGATGATCTTCGTGCCT 59.533 55.000 2.77 0.00 0.00 4.75
2526 2627 5.225743 GGAGTTTTGTCGTACGTTTTTGTTC 59.774 40.000 16.05 7.22 0.00 3.18
2545 2779 7.308926 TTGTTCTTACAAACGTGCACAACGA 62.309 40.000 18.64 7.16 46.87 3.85
2597 2831 2.512485 TTTGAGACGTCGGCTTGTTA 57.488 45.000 10.46 0.00 0.00 2.41
2598 2832 2.512485 TTGAGACGTCGGCTTGTTAA 57.488 45.000 10.46 0.00 0.00 2.01
2599 2833 2.736144 TGAGACGTCGGCTTGTTAAT 57.264 45.000 10.46 0.00 0.00 1.40
2600 2834 3.034721 TGAGACGTCGGCTTGTTAATT 57.965 42.857 10.46 0.00 0.00 1.40
2602 2836 3.922240 TGAGACGTCGGCTTGTTAATTAC 59.078 43.478 10.46 0.00 0.00 1.89
2604 2838 3.924686 AGACGTCGGCTTGTTAATTACTG 59.075 43.478 10.46 0.00 0.00 2.74
2605 2839 3.916761 ACGTCGGCTTGTTAATTACTGA 58.083 40.909 0.00 0.00 0.00 3.41
2606 2840 3.676646 ACGTCGGCTTGTTAATTACTGAC 59.323 43.478 0.00 3.13 0.00 3.51
2607 2841 3.676172 CGTCGGCTTGTTAATTACTGACA 59.324 43.478 10.78 0.04 0.00 3.58
2629 2891 1.338655 GTCGCTGAGAATCTCCCTACC 59.661 57.143 7.91 0.00 34.92 3.18
2630 2892 1.215673 TCGCTGAGAATCTCCCTACCT 59.784 52.381 7.91 0.00 34.92 3.08
2631 2893 2.035632 CGCTGAGAATCTCCCTACCTT 58.964 52.381 7.91 0.00 34.92 3.50
2632 2894 3.117625 TCGCTGAGAATCTCCCTACCTTA 60.118 47.826 7.91 0.00 34.92 2.69
2633 2895 3.004944 CGCTGAGAATCTCCCTACCTTAC 59.995 52.174 7.91 0.00 34.92 2.34
2702 2970 4.080863 GGTCCTGGAAGATTCAGTACACAT 60.081 45.833 0.00 0.00 34.07 3.21
2781 3049 2.143876 AACTGTGCTTTGTTCCCACT 57.856 45.000 0.00 0.00 0.00 4.00
2787 3055 0.877743 GCTTTGTTCCCACTCTCTGC 59.122 55.000 0.00 0.00 0.00 4.26
2793 3061 1.066787 GTTCCCACTCTCTGCACCTAC 60.067 57.143 0.00 0.00 0.00 3.18
2794 3062 0.409876 TCCCACTCTCTGCACCTACT 59.590 55.000 0.00 0.00 0.00 2.57
2795 3063 0.534412 CCCACTCTCTGCACCTACTG 59.466 60.000 0.00 0.00 0.00 2.74
2796 3064 1.261480 CCACTCTCTGCACCTACTGT 58.739 55.000 0.00 0.00 0.00 3.55
2797 3065 2.447443 CCACTCTCTGCACCTACTGTA 58.553 52.381 0.00 0.00 0.00 2.74
2798 3066 3.027412 CCACTCTCTGCACCTACTGTAT 58.973 50.000 0.00 0.00 0.00 2.29
2799 3067 4.207955 CCACTCTCTGCACCTACTGTATA 58.792 47.826 0.00 0.00 0.00 1.47
2800 3068 4.830046 CCACTCTCTGCACCTACTGTATAT 59.170 45.833 0.00 0.00 0.00 0.86
2801 3069 5.278709 CCACTCTCTGCACCTACTGTATATG 60.279 48.000 0.00 0.00 0.00 1.78
2802 3070 5.300539 CACTCTCTGCACCTACTGTATATGT 59.699 44.000 0.00 0.00 0.00 2.29
2803 3071 5.300539 ACTCTCTGCACCTACTGTATATGTG 59.699 44.000 7.51 7.51 0.00 3.21
2809 3077 3.804325 CACCTACTGTATATGTGCACTGC 59.196 47.826 19.41 1.74 0.00 4.40
2810 3078 3.181465 ACCTACTGTATATGTGCACTGCC 60.181 47.826 19.41 2.18 0.00 4.85
2811 3079 3.070159 CCTACTGTATATGTGCACTGCCT 59.930 47.826 19.41 2.80 0.00 4.75
2812 3080 4.280929 CCTACTGTATATGTGCACTGCCTA 59.719 45.833 19.41 5.03 0.00 3.93
2813 3081 4.060038 ACTGTATATGTGCACTGCCTAC 57.940 45.455 19.41 13.87 0.00 3.18
2814 3082 3.706594 ACTGTATATGTGCACTGCCTACT 59.293 43.478 19.41 0.00 0.00 2.57
2815 3083 4.053983 CTGTATATGTGCACTGCCTACTG 58.946 47.826 19.41 13.22 0.00 2.74
2816 3084 3.450817 TGTATATGTGCACTGCCTACTGT 59.549 43.478 19.41 0.00 0.00 3.55
2817 3085 4.647399 TGTATATGTGCACTGCCTACTGTA 59.353 41.667 19.41 0.00 0.00 2.74
2832 3100 8.651589 TGCCTACTGTATATGCTATAAACTCT 57.348 34.615 0.00 0.00 0.00 3.24
2873 3141 3.462483 AAATTCGGGTGTGGGAAAAAC 57.538 42.857 0.00 0.00 0.00 2.43
2895 3163 3.181520 CCGATTTTCAAGGAACTGTAGCG 60.182 47.826 0.00 0.00 40.86 4.26
2932 3203 4.330944 TCTATATACAAACCCCACTGCG 57.669 45.455 0.00 0.00 0.00 5.18
2961 3232 8.774586 AGTATTAATAGCTATCGCCACAAAAAG 58.225 33.333 6.72 0.00 36.60 2.27
2962 3233 7.801716 ATTAATAGCTATCGCCACAAAAAGA 57.198 32.000 6.72 0.00 36.60 2.52
3005 3278 7.446931 TCCTTTTTCTTTTTGCAGGAAAACTTT 59.553 29.630 14.09 0.00 38.24 2.66
3032 3388 8.415553 CAATCTATTTATCTCCAATTGTGGCAA 58.584 33.333 4.43 0.00 45.54 4.52
3091 3447 5.905331 ACATCCAGATTCATAGACCACCTAA 59.095 40.000 0.00 0.00 0.00 2.69
3093 3449 4.341235 TCCAGATTCATAGACCACCTAACG 59.659 45.833 0.00 0.00 0.00 3.18
3104 3460 2.622942 ACCACCTAACGACGACTACAAA 59.377 45.455 0.00 0.00 0.00 2.83
3112 3468 3.369385 ACGACGACTACAAACACTCAAG 58.631 45.455 0.00 0.00 0.00 3.02
3170 3526 3.431725 GGAGCCCGGCAAAACTCG 61.432 66.667 13.15 0.00 0.00 4.18
3176 3532 0.236449 CCCGGCAAAACTCGTTGTAC 59.764 55.000 0.00 0.00 0.00 2.90
3183 3539 4.150098 GGCAAAACTCGTTGTACTAGACAG 59.850 45.833 0.00 0.00 39.88 3.51
3185 3541 5.233689 GCAAAACTCGTTGTACTAGACAGTT 59.766 40.000 0.00 1.81 39.88 3.16
3186 3542 6.637365 CAAAACTCGTTGTACTAGACAGTTG 58.363 40.000 0.00 0.00 39.88 3.16
3187 3543 4.500603 ACTCGTTGTACTAGACAGTTGG 57.499 45.455 0.00 0.00 39.88 3.77
3202 3558 2.939261 TTGGGAAGTCGCCGGAGTC 61.939 63.158 5.05 0.00 0.00 3.36
3203 3559 3.379445 GGGAAGTCGCCGGAGTCA 61.379 66.667 5.05 0.00 0.00 3.41
3206 3562 3.358076 GAAGTCGCCGGAGTCAGGG 62.358 68.421 5.05 3.26 0.00 4.45
3227 3584 9.775539 TCAGGGAGTATCATAGCTATTTTCTAT 57.224 33.333 2.64 0.00 36.25 1.98
3230 3587 9.810545 GGGAGTATCATAGCTATTTTCTATCAC 57.189 37.037 2.64 0.00 36.25 3.06
3240 3597 8.682936 AGCTATTTTCTATCACCACAATAAGG 57.317 34.615 0.00 0.00 0.00 2.69
3282 3639 6.630444 ATGATAGTTGGATTTGCTAGCTTG 57.370 37.500 17.23 0.00 0.00 4.01
3301 3658 1.271871 TGGTCCACCAATAGTTGCCTG 60.272 52.381 0.00 0.00 44.35 4.85
3314 3671 3.614092 AGTTGCCTGATCCACACATAAG 58.386 45.455 0.00 0.00 0.00 1.73
3340 3697 5.744171 TGTCTCTACCATACAACATGCATT 58.256 37.500 0.00 0.00 0.00 3.56
3341 3698 6.883744 TGTCTCTACCATACAACATGCATTA 58.116 36.000 0.00 0.00 0.00 1.90
3342 3699 7.334858 TGTCTCTACCATACAACATGCATTAA 58.665 34.615 0.00 0.00 0.00 1.40
3343 3700 7.992608 TGTCTCTACCATACAACATGCATTAAT 59.007 33.333 0.00 0.00 0.00 1.40
3344 3701 8.285394 GTCTCTACCATACAACATGCATTAATG 58.715 37.037 11.27 11.27 0.00 1.90
3379 3736 9.687210 GTTTTTATTTCCATCGTATTTATCCCC 57.313 33.333 0.00 0.00 0.00 4.81
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.722706 CGGCATTTCATATGACGCATCG 60.723 50.000 17.96 11.66 43.99 3.84
10 11 1.778334 CGACGGATCGGCATTTCATA 58.222 50.000 0.00 0.00 44.99 2.15
21 22 1.411493 GACGGTTTCAGCGACGGATC 61.411 60.000 1.79 0.00 42.41 3.36
22 23 1.445582 GACGGTTTCAGCGACGGAT 60.446 57.895 1.79 0.00 42.41 4.18
26 27 1.300697 AGTGGACGGTTTCAGCGAC 60.301 57.895 1.79 0.00 42.41 5.19
27 28 1.300620 CAGTGGACGGTTTCAGCGA 60.301 57.895 1.79 0.00 42.41 4.93
57 58 2.159476 CGTCATTCTTGGAGGTGCATTG 60.159 50.000 0.00 0.00 0.00 2.82
60 61 0.955428 GCGTCATTCTTGGAGGTGCA 60.955 55.000 0.00 0.00 0.00 4.57
67 70 2.824041 CGGGGGCGTCATTCTTGG 60.824 66.667 0.00 0.00 0.00 3.61
89 92 1.860078 CGACGCTCTTGTGTTTCCC 59.140 57.895 0.00 0.00 37.00 3.97
90 93 1.204312 GCGACGCTCTTGTGTTTCC 59.796 57.895 13.73 0.00 37.00 3.13
104 109 2.658593 CGATGGGATGACGGCGAC 60.659 66.667 16.62 8.59 0.00 5.19
105 110 2.831284 TCGATGGGATGACGGCGA 60.831 61.111 16.62 0.00 0.00 5.54
107 112 1.592669 CAGTCGATGGGATGACGGC 60.593 63.158 0.00 0.00 40.05 5.68
112 117 3.071602 ACCCTAAATCAGTCGATGGGATG 59.928 47.826 0.00 0.00 36.36 3.51
133 138 2.588439 GCTACCTCCGGGGGAAAC 59.412 66.667 32.33 11.94 40.03 2.78
134 139 3.078836 CGCTACCTCCGGGGGAAA 61.079 66.667 32.33 14.33 40.03 3.13
147 152 1.678627 GCTCAAGATCTCTGTCCGCTA 59.321 52.381 0.00 0.00 0.00 4.26
148 153 0.459489 GCTCAAGATCTCTGTCCGCT 59.541 55.000 0.00 0.00 0.00 5.52
149 154 0.459489 AGCTCAAGATCTCTGTCCGC 59.541 55.000 0.00 2.96 0.00 5.54
150 155 2.426738 AGAAGCTCAAGATCTCTGTCCG 59.573 50.000 0.00 0.00 0.00 4.79
151 156 3.181476 GGAGAAGCTCAAGATCTCTGTCC 60.181 52.174 11.23 0.00 39.59 4.02
152 157 3.181476 GGGAGAAGCTCAAGATCTCTGTC 60.181 52.174 11.23 0.00 39.59 3.51
153 158 2.765699 GGGAGAAGCTCAAGATCTCTGT 59.234 50.000 11.23 0.00 39.59 3.41
154 159 2.102925 GGGGAGAAGCTCAAGATCTCTG 59.897 54.545 11.23 0.00 39.59 3.35
155 160 2.292785 TGGGGAGAAGCTCAAGATCTCT 60.293 50.000 11.23 0.00 39.59 3.10
156 161 2.102925 CTGGGGAGAAGCTCAAGATCTC 59.897 54.545 0.00 4.09 39.06 2.75
157 162 2.117865 CTGGGGAGAAGCTCAAGATCT 58.882 52.381 0.00 0.00 31.08 2.75
158 163 1.474855 GCTGGGGAGAAGCTCAAGATC 60.475 57.143 0.00 0.00 37.69 2.75
159 164 0.545646 GCTGGGGAGAAGCTCAAGAT 59.454 55.000 0.00 0.00 37.69 2.40
160 165 1.892819 CGCTGGGGAGAAGCTCAAGA 61.893 60.000 0.00 0.00 38.57 3.02
161 166 1.449246 CGCTGGGGAGAAGCTCAAG 60.449 63.158 0.00 0.00 38.57 3.02
162 167 1.267574 ATCGCTGGGGAGAAGCTCAA 61.268 55.000 0.00 0.00 38.57 3.02
163 168 1.687146 ATCGCTGGGGAGAAGCTCA 60.687 57.895 0.00 0.00 38.57 4.26
164 169 1.227497 CATCGCTGGGGAGAAGCTC 60.227 63.158 0.00 0.00 38.57 4.09
165 170 2.906458 CATCGCTGGGGAGAAGCT 59.094 61.111 0.00 0.00 38.57 3.74
166 171 2.899339 GCATCGCTGGGGAGAAGC 60.899 66.667 0.00 0.00 37.31 3.86
167 172 2.203126 GGCATCGCTGGGGAGAAG 60.203 66.667 0.00 0.00 0.00 2.85
168 173 2.257409 GAAGGCATCGCTGGGGAGAA 62.257 60.000 0.00 0.00 0.00 2.87
169 174 2.688666 AAGGCATCGCTGGGGAGA 60.689 61.111 0.00 0.00 0.00 3.71
170 175 2.203126 GAAGGCATCGCTGGGGAG 60.203 66.667 0.00 0.00 0.00 4.30
171 176 2.541547 CTTGAAGGCATCGCTGGGGA 62.542 60.000 0.00 0.00 0.00 4.81
172 177 2.045045 TTGAAGGCATCGCTGGGG 60.045 61.111 0.00 0.00 0.00 4.96
173 178 0.677731 TTCTTGAAGGCATCGCTGGG 60.678 55.000 0.00 0.00 0.00 4.45
174 179 0.731417 CTTCTTGAAGGCATCGCTGG 59.269 55.000 2.63 0.00 0.00 4.85
175 180 0.731417 CCTTCTTGAAGGCATCGCTG 59.269 55.000 15.43 0.00 32.43 5.18
176 181 0.393537 CCCTTCTTGAAGGCATCGCT 60.394 55.000 20.71 0.00 38.63 4.93
177 182 1.379642 CCCCTTCTTGAAGGCATCGC 61.380 60.000 20.71 0.00 38.63 4.58
178 183 0.253044 TCCCCTTCTTGAAGGCATCG 59.747 55.000 20.71 9.40 38.63 3.84
179 184 1.756430 GTCCCCTTCTTGAAGGCATC 58.244 55.000 20.71 10.58 38.63 3.91
180 185 0.035056 CGTCCCCTTCTTGAAGGCAT 60.035 55.000 20.71 0.00 38.63 4.40
181 186 1.125093 TCGTCCCCTTCTTGAAGGCA 61.125 55.000 20.71 8.97 38.63 4.75
182 187 0.673956 GTCGTCCCCTTCTTGAAGGC 60.674 60.000 20.71 9.02 38.63 4.35
183 188 0.389948 CGTCGTCCCCTTCTTGAAGG 60.390 60.000 19.53 19.53 39.68 3.46
184 189 1.014564 GCGTCGTCCCCTTCTTGAAG 61.015 60.000 3.55 3.55 0.00 3.02
185 190 1.005394 GCGTCGTCCCCTTCTTGAA 60.005 57.895 0.00 0.00 0.00 2.69
186 191 2.154798 CTGCGTCGTCCCCTTCTTGA 62.155 60.000 0.00 0.00 0.00 3.02
187 192 1.738099 CTGCGTCGTCCCCTTCTTG 60.738 63.158 0.00 0.00 0.00 3.02
188 193 1.469335 TTCTGCGTCGTCCCCTTCTT 61.469 55.000 0.00 0.00 0.00 2.52
189 194 1.878656 CTTCTGCGTCGTCCCCTTCT 61.879 60.000 0.00 0.00 0.00 2.85
190 195 1.446272 CTTCTGCGTCGTCCCCTTC 60.446 63.158 0.00 0.00 0.00 3.46
191 196 1.469335 TTCTTCTGCGTCGTCCCCTT 61.469 55.000 0.00 0.00 0.00 3.95
192 197 1.906824 TTCTTCTGCGTCGTCCCCT 60.907 57.895 0.00 0.00 0.00 4.79
193 198 1.737008 GTTCTTCTGCGTCGTCCCC 60.737 63.158 0.00 0.00 0.00 4.81
194 199 2.087009 CGTTCTTCTGCGTCGTCCC 61.087 63.158 0.00 0.00 0.00 4.46
195 200 2.717809 GCGTTCTTCTGCGTCGTCC 61.718 63.158 0.00 0.00 0.00 4.79
196 201 2.717809 GGCGTTCTTCTGCGTCGTC 61.718 63.158 0.00 0.00 0.00 4.20
197 202 2.733593 GGCGTTCTTCTGCGTCGT 60.734 61.111 0.00 0.00 0.00 4.34
199 204 2.430244 TCGGCGTTCTTCTGCGTC 60.430 61.111 6.85 0.00 0.00 5.19
200 205 2.733593 GTCGGCGTTCTTCTGCGT 60.734 61.111 6.85 0.00 0.00 5.24
201 206 2.014093 GATGTCGGCGTTCTTCTGCG 62.014 60.000 6.85 0.00 0.00 5.18
202 207 1.710339 GATGTCGGCGTTCTTCTGC 59.290 57.895 6.85 0.00 0.00 4.26
203 208 1.991430 CGATGTCGGCGTTCTTCTG 59.009 57.895 6.85 3.36 35.37 3.02
204 209 1.805945 GCGATGTCGGCGTTCTTCT 60.806 57.895 6.85 0.00 40.23 2.85
205 210 2.695646 GCGATGTCGGCGTTCTTC 59.304 61.111 6.85 8.46 40.23 2.87
213 218 3.197790 CAAGGCTGGCGATGTCGG 61.198 66.667 4.44 0.00 40.23 4.79
214 219 3.197790 CCAAGGCTGGCGATGTCG 61.198 66.667 0.00 0.00 43.27 4.35
222 227 3.595819 GCTAGTTGCCAAGGCTGG 58.404 61.111 12.96 0.00 46.65 4.85
240 245 2.033194 GGTGAAAACCCCGCTCTCG 61.033 63.158 0.00 0.00 0.00 4.04
241 246 0.955919 CAGGTGAAAACCCCGCTCTC 60.956 60.000 0.00 0.00 0.00 3.20
242 247 1.073199 CAGGTGAAAACCCCGCTCT 59.927 57.895 0.00 0.00 0.00 4.09
243 248 1.971695 CCAGGTGAAAACCCCGCTC 60.972 63.158 0.00 0.00 0.00 5.03
244 249 1.789576 ATCCAGGTGAAAACCCCGCT 61.790 55.000 0.00 0.00 0.00 5.52
245 250 1.304134 ATCCAGGTGAAAACCCCGC 60.304 57.895 0.00 0.00 0.00 6.13
246 251 0.328258 AGATCCAGGTGAAAACCCCG 59.672 55.000 0.00 0.00 0.00 5.73
247 252 1.839424 CAGATCCAGGTGAAAACCCC 58.161 55.000 0.00 0.00 0.00 4.95
248 253 1.177401 GCAGATCCAGGTGAAAACCC 58.823 55.000 0.00 0.00 0.00 4.11
249 254 2.087646 GAGCAGATCCAGGTGAAAACC 58.912 52.381 0.00 0.00 0.00 3.27
250 255 1.734465 CGAGCAGATCCAGGTGAAAAC 59.266 52.381 0.00 0.00 0.00 2.43
251 256 1.623311 TCGAGCAGATCCAGGTGAAAA 59.377 47.619 0.00 0.00 0.00 2.29
252 257 1.066858 GTCGAGCAGATCCAGGTGAAA 60.067 52.381 0.00 0.00 0.00 2.69
253 258 0.532573 GTCGAGCAGATCCAGGTGAA 59.467 55.000 0.00 0.00 0.00 3.18
254 259 0.611896 TGTCGAGCAGATCCAGGTGA 60.612 55.000 0.00 0.00 0.00 4.02
255 260 0.247460 TTGTCGAGCAGATCCAGGTG 59.753 55.000 0.00 0.00 0.00 4.00
256 261 0.534412 CTTGTCGAGCAGATCCAGGT 59.466 55.000 0.00 0.00 0.00 4.00
257 262 3.359194 CTTGTCGAGCAGATCCAGG 57.641 57.895 0.00 0.00 0.00 4.45
267 272 0.108898 CTGGACTGAGGCTTGTCGAG 60.109 60.000 15.00 15.00 33.96 4.04
268 273 1.967535 CTGGACTGAGGCTTGTCGA 59.032 57.895 12.99 9.66 34.31 4.20
269 274 1.739562 GCTGGACTGAGGCTTGTCG 60.740 63.158 12.99 4.63 34.31 4.35
270 275 0.035630 ATGCTGGACTGAGGCTTGTC 60.036 55.000 11.54 11.54 0.00 3.18
271 276 0.035630 GATGCTGGACTGAGGCTTGT 60.036 55.000 0.00 0.00 0.00 3.16
272 277 0.252479 AGATGCTGGACTGAGGCTTG 59.748 55.000 0.00 0.00 0.00 4.01
273 278 0.990374 AAGATGCTGGACTGAGGCTT 59.010 50.000 0.00 0.00 0.00 4.35
274 279 0.252479 CAAGATGCTGGACTGAGGCT 59.748 55.000 0.00 0.00 0.00 4.58
275 280 0.035630 ACAAGATGCTGGACTGAGGC 60.036 55.000 0.00 0.00 0.00 4.70
276 281 1.678123 CCACAAGATGCTGGACTGAGG 60.678 57.143 0.00 0.00 0.00 3.86
277 282 1.277273 TCCACAAGATGCTGGACTGAG 59.723 52.381 0.00 0.00 31.20 3.35
278 283 1.351076 TCCACAAGATGCTGGACTGA 58.649 50.000 0.00 0.00 31.20 3.41
279 284 3.942351 TCCACAAGATGCTGGACTG 57.058 52.632 0.00 0.00 31.20 3.51
282 287 1.296392 CGGTCCACAAGATGCTGGA 59.704 57.895 0.00 0.00 33.95 3.86
283 288 1.746615 CCGGTCCACAAGATGCTGG 60.747 63.158 0.00 0.00 0.00 4.85
284 289 0.107508 ATCCGGTCCACAAGATGCTG 60.108 55.000 0.00 0.00 0.00 4.41
285 290 0.179000 GATCCGGTCCACAAGATGCT 59.821 55.000 0.00 0.00 0.00 3.79
286 291 1.154205 CGATCCGGTCCACAAGATGC 61.154 60.000 0.00 0.00 0.00 3.91
287 292 1.154205 GCGATCCGGTCCACAAGATG 61.154 60.000 0.00 0.00 0.00 2.90
288 293 1.144057 GCGATCCGGTCCACAAGAT 59.856 57.895 0.00 0.00 0.00 2.40
289 294 1.945354 GAGCGATCCGGTCCACAAGA 61.945 60.000 0.00 0.00 46.63 3.02
290 295 1.519455 GAGCGATCCGGTCCACAAG 60.519 63.158 0.00 0.00 46.63 3.16
291 296 2.577059 GAGCGATCCGGTCCACAA 59.423 61.111 0.00 0.00 46.63 3.33
306 311 4.435436 TGGTAGCACTGCGGCGAG 62.435 66.667 12.98 8.03 39.27 5.03
307 312 4.735132 GTGGTAGCACTGCGGCGA 62.735 66.667 17.69 0.00 39.27 5.54
310 315 4.778143 GGGGTGGTAGCACTGCGG 62.778 72.222 23.29 0.00 0.00 5.69
311 316 4.778143 GGGGGTGGTAGCACTGCG 62.778 72.222 23.29 0.00 0.00 5.18
312 317 3.646715 TGGGGGTGGTAGCACTGC 61.647 66.667 23.29 8.72 0.00 4.40
313 318 2.351276 GTGGGGGTGGTAGCACTG 59.649 66.667 23.29 0.00 0.00 3.66
314 319 3.319198 CGTGGGGGTGGTAGCACT 61.319 66.667 23.29 0.00 0.00 4.40
332 337 4.598894 CTGGATCTGGGCGAGCGG 62.599 72.222 0.00 0.00 0.00 5.52
333 338 3.531207 TCTGGATCTGGGCGAGCG 61.531 66.667 0.00 0.00 0.00 5.03
334 339 2.107953 GTCTGGATCTGGGCGAGC 59.892 66.667 0.00 0.00 0.00 5.03
335 340 1.142748 GTGTCTGGATCTGGGCGAG 59.857 63.158 0.00 0.00 0.00 5.03
336 341 2.710902 CGTGTCTGGATCTGGGCGA 61.711 63.158 0.00 0.00 0.00 5.54
337 342 2.202797 CGTGTCTGGATCTGGGCG 60.203 66.667 0.00 0.00 0.00 6.13
338 343 2.512515 GCGTGTCTGGATCTGGGC 60.513 66.667 0.00 0.00 0.00 5.36
339 344 1.448540 GTGCGTGTCTGGATCTGGG 60.449 63.158 0.00 0.00 0.00 4.45
340 345 1.807165 CGTGCGTGTCTGGATCTGG 60.807 63.158 0.00 0.00 0.00 3.86
341 346 1.073216 GACGTGCGTGTCTGGATCTG 61.073 60.000 0.67 0.00 35.95 2.90
342 347 1.213013 GACGTGCGTGTCTGGATCT 59.787 57.895 0.67 0.00 35.95 2.75
343 348 3.768632 GACGTGCGTGTCTGGATC 58.231 61.111 0.67 0.00 35.95 3.36
358 363 2.799540 GATTTGACGGCGGCGAGAC 61.800 63.158 38.93 25.80 0.00 3.36
359 364 2.508439 GATTTGACGGCGGCGAGA 60.508 61.111 38.93 20.36 0.00 4.04
360 365 3.913573 CGATTTGACGGCGGCGAG 61.914 66.667 38.93 10.81 0.00 5.03
361 366 4.728102 ACGATTTGACGGCGGCGA 62.728 61.111 38.93 16.52 37.61 5.54
362 367 4.204891 GACGATTTGACGGCGGCG 62.205 66.667 31.06 31.06 37.61 6.46
368 373 1.348250 CATGGCCGACGATTTGACG 59.652 57.895 0.00 0.00 39.31 4.35
369 374 1.721487 CCATGGCCGACGATTTGAC 59.279 57.895 0.00 0.00 0.00 3.18
370 375 2.112198 GCCATGGCCGACGATTTGA 61.112 57.895 27.24 0.00 34.56 2.69
371 376 2.408835 GCCATGGCCGACGATTTG 59.591 61.111 27.24 0.00 34.56 2.32
418 423 2.601367 CTTGGGGTGCCTTGGTGG 60.601 66.667 0.00 0.00 39.35 4.61
419 424 2.601367 CCTTGGGGTGCCTTGGTG 60.601 66.667 0.00 0.00 0.00 4.17
420 425 4.621087 GCCTTGGGGTGCCTTGGT 62.621 66.667 0.00 0.00 34.45 3.67
449 454 2.026301 GGCCTCGTCCGAGATTCG 59.974 66.667 17.73 2.63 44.53 3.34
450 455 2.356818 CTGGGCCTCGTCCGAGATTC 62.357 65.000 17.73 6.64 44.53 2.52
451 456 2.363795 TGGGCCTCGTCCGAGATT 60.364 61.111 17.73 0.00 44.53 2.40
452 457 2.835431 CTGGGCCTCGTCCGAGAT 60.835 66.667 17.73 0.00 44.53 2.75
477 482 0.389948 GGACTCTATTATGCCGCCGG 60.390 60.000 0.00 0.00 0.00 6.13
478 483 0.389948 GGGACTCTATTATGCCGCCG 60.390 60.000 0.00 0.00 0.00 6.46
479 484 0.389948 CGGGACTCTATTATGCCGCC 60.390 60.000 0.00 0.00 43.08 6.13
480 485 3.123674 CGGGACTCTATTATGCCGC 57.876 57.895 0.00 0.00 43.08 6.53
482 487 1.968493 TGACCGGGACTCTATTATGCC 59.032 52.381 6.32 0.00 0.00 4.40
483 488 2.628657 ACTGACCGGGACTCTATTATGC 59.371 50.000 6.32 0.00 0.00 3.14
484 489 3.256136 GGACTGACCGGGACTCTATTATG 59.744 52.174 6.32 0.00 0.00 1.90
485 490 3.117246 TGGACTGACCGGGACTCTATTAT 60.117 47.826 6.32 0.00 42.61 1.28
486 491 2.242965 TGGACTGACCGGGACTCTATTA 59.757 50.000 6.32 0.00 42.61 0.98
487 492 1.006758 TGGACTGACCGGGACTCTATT 59.993 52.381 6.32 0.00 42.61 1.73
488 493 0.629596 TGGACTGACCGGGACTCTAT 59.370 55.000 6.32 0.00 42.61 1.98
489 494 0.629596 ATGGACTGACCGGGACTCTA 59.370 55.000 6.32 0.00 42.61 2.43
490 495 0.684805 GATGGACTGACCGGGACTCT 60.685 60.000 6.32 0.00 42.61 3.24
491 496 1.677637 GGATGGACTGACCGGGACTC 61.678 65.000 6.32 0.00 42.61 3.36
492 497 1.686110 GGATGGACTGACCGGGACT 60.686 63.158 6.32 0.00 42.61 3.85
493 498 2.732619 GGGATGGACTGACCGGGAC 61.733 68.421 6.32 0.00 42.61 4.46
494 499 2.365105 GGGATGGACTGACCGGGA 60.365 66.667 6.32 0.00 42.61 5.14
495 500 2.365635 AGGGATGGACTGACCGGG 60.366 66.667 6.32 0.00 42.61 5.73
496 501 1.381872 AGAGGGATGGACTGACCGG 60.382 63.158 0.00 0.00 42.61 5.28
497 502 1.819229 CAGAGGGATGGACTGACCG 59.181 63.158 0.00 0.00 42.61 4.79
498 503 1.267574 TGCAGAGGGATGGACTGACC 61.268 60.000 0.00 0.00 39.54 4.02
499 504 0.615331 TTGCAGAGGGATGGACTGAC 59.385 55.000 0.00 0.00 34.07 3.51
500 505 0.615331 GTTGCAGAGGGATGGACTGA 59.385 55.000 0.00 0.00 34.07 3.41
501 506 0.393537 GGTTGCAGAGGGATGGACTG 60.394 60.000 0.00 0.00 35.14 3.51
502 507 1.566298 GGGTTGCAGAGGGATGGACT 61.566 60.000 0.00 0.00 0.00 3.85
503 508 1.077429 GGGTTGCAGAGGGATGGAC 60.077 63.158 0.00 0.00 0.00 4.02
504 509 2.669133 CGGGTTGCAGAGGGATGGA 61.669 63.158 0.00 0.00 0.00 3.41
505 510 2.124570 CGGGTTGCAGAGGGATGG 60.125 66.667 0.00 0.00 0.00 3.51
506 511 1.026718 GTTCGGGTTGCAGAGGGATG 61.027 60.000 0.00 0.00 0.00 3.51
507 512 1.299976 GTTCGGGTTGCAGAGGGAT 59.700 57.895 0.00 0.00 0.00 3.85
508 513 2.747686 GTTCGGGTTGCAGAGGGA 59.252 61.111 0.00 0.00 0.00 4.20
509 514 2.742372 CGTTCGGGTTGCAGAGGG 60.742 66.667 0.00 0.00 0.00 4.30
510 515 2.742372 CCGTTCGGGTTGCAGAGG 60.742 66.667 3.04 0.00 0.00 3.69
511 516 2.742372 CCCGTTCGGGTTGCAGAG 60.742 66.667 20.65 0.00 40.49 3.35
516 521 3.719144 GAACGCCCGTTCGGGTTG 61.719 66.667 27.49 22.32 46.85 3.77
529 534 3.661025 GATGGCGCGGGTTTGAACG 62.661 63.158 8.83 0.00 0.00 3.95
530 535 2.178273 GATGGCGCGGGTTTGAAC 59.822 61.111 8.83 0.00 0.00 3.18
531 536 2.281831 TGATGGCGCGGGTTTGAA 60.282 55.556 8.83 0.00 0.00 2.69
532 537 3.053291 GTGATGGCGCGGGTTTGA 61.053 61.111 8.83 0.00 0.00 2.69
533 538 4.114997 GGTGATGGCGCGGGTTTG 62.115 66.667 8.83 0.00 0.00 2.93
569 574 0.179100 TCTCTACGCTCAAGCCATGC 60.179 55.000 0.00 0.00 37.91 4.06
571 576 0.749649 CCTCTCTACGCTCAAGCCAT 59.250 55.000 0.00 0.00 37.91 4.40
577 582 0.812014 CTCGCTCCTCTCTACGCTCA 60.812 60.000 0.00 0.00 0.00 4.26
584 589 4.067512 TGGGGCTCGCTCCTCTCT 62.068 66.667 9.56 0.00 37.51 3.10
648 662 4.162690 ATGTCCTTCCCTCGCCGC 62.163 66.667 0.00 0.00 0.00 6.53
651 665 2.109126 GCACATGTCCTTCCCTCGC 61.109 63.158 0.00 0.00 0.00 5.03
652 666 1.811266 CGCACATGTCCTTCCCTCG 60.811 63.158 0.00 0.00 0.00 4.63
653 667 0.036388 TTCGCACATGTCCTTCCCTC 60.036 55.000 0.00 0.00 0.00 4.30
654 668 0.036010 CTTCGCACATGTCCTTCCCT 60.036 55.000 0.00 0.00 0.00 4.20
655 669 0.036388 TCTTCGCACATGTCCTTCCC 60.036 55.000 0.00 0.00 0.00 3.97
656 670 2.029838 ATCTTCGCACATGTCCTTCC 57.970 50.000 0.00 0.00 0.00 3.46
657 671 3.309954 GGTTATCTTCGCACATGTCCTTC 59.690 47.826 0.00 0.00 0.00 3.46
658 672 3.055094 AGGTTATCTTCGCACATGTCCTT 60.055 43.478 0.00 0.00 0.00 3.36
659 673 2.501723 AGGTTATCTTCGCACATGTCCT 59.498 45.455 0.00 0.00 0.00 3.85
660 674 2.906354 AGGTTATCTTCGCACATGTCC 58.094 47.619 0.00 0.00 0.00 4.02
661 675 4.683832 ACTAGGTTATCTTCGCACATGTC 58.316 43.478 0.00 0.00 0.00 3.06
662 676 4.441634 GGACTAGGTTATCTTCGCACATGT 60.442 45.833 0.00 0.00 0.00 3.21
663 677 4.051922 GGACTAGGTTATCTTCGCACATG 58.948 47.826 0.00 0.00 0.00 3.21
664 678 3.069729 GGGACTAGGTTATCTTCGCACAT 59.930 47.826 0.00 0.00 0.00 3.21
665 679 2.429610 GGGACTAGGTTATCTTCGCACA 59.570 50.000 0.00 0.00 0.00 4.57
666 680 2.543238 CGGGACTAGGTTATCTTCGCAC 60.543 54.545 0.00 0.00 0.00 5.34
667 681 1.679680 CGGGACTAGGTTATCTTCGCA 59.320 52.381 0.00 0.00 0.00 5.10
668 682 1.000496 CCGGGACTAGGTTATCTTCGC 60.000 57.143 0.00 0.00 0.00 4.70
669 683 1.000496 GCCGGGACTAGGTTATCTTCG 60.000 57.143 2.18 0.00 0.00 3.79
781 802 1.079405 CGGGCGTGCCTAGAAAGAA 60.079 57.895 11.25 0.00 36.10 2.52
855 884 5.443283 TGCCGGTCTTATATATAGGTCGAT 58.557 41.667 1.90 0.00 0.00 3.59
877 906 1.387084 GACTGAAACTAAGCGACGCTG 59.613 52.381 25.24 14.56 39.62 5.18
890 919 1.116308 TGGTCTGGTGACGACTGAAA 58.884 50.000 0.00 0.00 43.79 2.69
1107 1143 3.832237 CTGCAGTCCCACCAGCGTT 62.832 63.158 5.25 0.00 0.00 4.84
1515 1595 0.411452 AGGAGAAGGTGAGCCAGAGA 59.589 55.000 0.00 0.00 37.19 3.10
1899 1982 1.152881 GGTGATCATGCCCTGGACC 60.153 63.158 0.00 0.00 0.00 4.46
2545 2779 7.944729 AATGAATAGCTTATTCCACAACACT 57.055 32.000 0.00 0.00 43.00 3.55
2597 2831 4.456280 TCTCAGCGACATGTCAGTAATT 57.544 40.909 24.93 1.28 0.00 1.40
2598 2832 4.456280 TTCTCAGCGACATGTCAGTAAT 57.544 40.909 24.93 3.29 0.00 1.89
2599 2833 3.934457 TTCTCAGCGACATGTCAGTAA 57.066 42.857 24.93 7.17 0.00 2.24
2600 2834 3.696548 AGATTCTCAGCGACATGTCAGTA 59.303 43.478 24.93 9.32 0.00 2.74
2602 2836 3.114809 GAGATTCTCAGCGACATGTCAG 58.885 50.000 24.93 17.71 0.00 3.51
2604 2838 2.468831 GGAGATTCTCAGCGACATGTC 58.531 52.381 16.21 16.21 31.08 3.06
2605 2839 1.137872 GGGAGATTCTCAGCGACATGT 59.862 52.381 15.36 0.00 31.08 3.21
2606 2840 1.411977 AGGGAGATTCTCAGCGACATG 59.588 52.381 15.36 0.00 31.08 3.21
2607 2841 1.786937 AGGGAGATTCTCAGCGACAT 58.213 50.000 15.36 0.00 31.08 3.06
2629 2891 4.637483 AATGCGGATGACAAATGGTAAG 57.363 40.909 0.00 0.00 0.00 2.34
2630 2892 5.432645 TCTAATGCGGATGACAAATGGTAA 58.567 37.500 0.00 0.00 0.00 2.85
2631 2893 5.029807 TCTAATGCGGATGACAAATGGTA 57.970 39.130 0.00 0.00 0.00 3.25
2632 2894 3.884895 TCTAATGCGGATGACAAATGGT 58.115 40.909 0.00 0.00 0.00 3.55
2633 2895 4.898829 TTCTAATGCGGATGACAAATGG 57.101 40.909 0.00 0.00 0.00 3.16
2692 2960 7.556275 TCACAGTATCTGATGTATGTGTACTGA 59.444 37.037 20.95 7.94 39.71 3.41
2702 2970 5.817296 GCCAAATGTCACAGTATCTGATGTA 59.183 40.000 0.00 0.00 35.18 2.29
2781 3049 5.774498 CACATATACAGTAGGTGCAGAGA 57.226 43.478 0.00 0.00 0.00 3.10
2787 3055 3.804325 GCAGTGCACATATACAGTAGGTG 59.196 47.826 21.04 4.53 0.00 4.00
2793 3061 4.053983 CAGTAGGCAGTGCACATATACAG 58.946 47.826 21.04 9.17 0.00 2.74
2794 3062 3.450817 ACAGTAGGCAGTGCACATATACA 59.549 43.478 21.04 0.00 0.00 2.29
2795 3063 4.060038 ACAGTAGGCAGTGCACATATAC 57.940 45.455 21.04 15.13 0.00 1.47
2796 3064 7.547227 CATATACAGTAGGCAGTGCACATATA 58.453 38.462 21.04 12.93 0.00 0.86
2797 3065 4.963318 ATACAGTAGGCAGTGCACATAT 57.037 40.909 21.04 6.95 0.00 1.78
2798 3066 5.783111 CATATACAGTAGGCAGTGCACATA 58.217 41.667 21.04 4.15 0.00 2.29
2799 3067 4.635223 CATATACAGTAGGCAGTGCACAT 58.365 43.478 21.04 4.64 0.00 3.21
2800 3068 3.741075 GCATATACAGTAGGCAGTGCACA 60.741 47.826 21.04 0.00 0.00 4.57
2801 3069 2.802816 GCATATACAGTAGGCAGTGCAC 59.197 50.000 18.61 9.40 0.00 4.57
2802 3070 2.700371 AGCATATACAGTAGGCAGTGCA 59.300 45.455 18.61 0.00 34.01 4.57
2803 3071 3.393089 AGCATATACAGTAGGCAGTGC 57.607 47.619 6.55 6.55 0.00 4.40
2804 3072 8.307483 AGTTTATAGCATATACAGTAGGCAGTG 58.693 37.037 4.92 0.00 0.00 3.66
2805 3073 8.423906 AGTTTATAGCATATACAGTAGGCAGT 57.576 34.615 4.92 0.00 0.00 4.40
2806 3074 8.744652 AGAGTTTATAGCATATACAGTAGGCAG 58.255 37.037 4.92 0.00 0.00 4.85
2807 3075 8.651589 AGAGTTTATAGCATATACAGTAGGCA 57.348 34.615 4.92 0.00 0.00 4.75
2808 3076 8.192110 GGAGAGTTTATAGCATATACAGTAGGC 58.808 40.741 0.00 0.00 0.00 3.93
2809 3077 9.244292 TGGAGAGTTTATAGCATATACAGTAGG 57.756 37.037 0.00 0.00 0.00 3.18
2814 3082 9.725019 CCAAATGGAGAGTTTATAGCATATACA 57.275 33.333 0.00 0.00 37.39 2.29
2815 3083 9.167311 CCCAAATGGAGAGTTTATAGCATATAC 57.833 37.037 0.00 0.00 37.39 1.47
2816 3084 8.890472 ACCCAAATGGAGAGTTTATAGCATATA 58.110 33.333 0.00 0.00 37.39 0.86
2817 3085 7.759607 ACCCAAATGGAGAGTTTATAGCATAT 58.240 34.615 0.00 0.00 37.39 1.78
2832 3100 4.428294 TTCATTGCAAAACCCAAATGGA 57.572 36.364 1.71 0.00 37.39 3.41
2873 3141 3.181520 CGCTACAGTTCCTTGAAAATCGG 60.182 47.826 0.00 0.00 0.00 4.18
2980 3253 6.741992 AGTTTTCCTGCAAAAAGAAAAAGG 57.258 33.333 12.48 0.00 40.20 3.11
3020 3376 7.040494 TCATTGTATTGTATTGCCACAATTGG 58.960 34.615 10.83 0.00 44.75 3.16
3025 3381 6.041511 GCATTCATTGTATTGTATTGCCACA 58.958 36.000 0.00 0.00 0.00 4.17
3026 3382 5.463061 GGCATTCATTGTATTGTATTGCCAC 59.537 40.000 5.30 0.00 37.48 5.01
3079 3435 2.996631 AGTCGTCGTTAGGTGGTCTAT 58.003 47.619 0.00 0.00 0.00 1.98
3091 3447 3.369385 CTTGAGTGTTTGTAGTCGTCGT 58.631 45.455 0.00 0.00 0.00 4.34
3093 3449 2.153247 CGCTTGAGTGTTTGTAGTCGTC 59.847 50.000 0.00 0.00 0.00 4.20
3104 3460 0.320247 CCTTCAGCTCGCTTGAGTGT 60.320 55.000 0.00 0.00 42.01 3.55
3153 3509 3.431725 CGAGTTTTGCCGGGCTCC 61.432 66.667 21.46 5.18 0.00 4.70
3159 3515 3.120782 GTCTAGTACAACGAGTTTTGCCG 59.879 47.826 0.00 0.00 0.00 5.69
3161 3517 4.743644 ACTGTCTAGTACAACGAGTTTTGC 59.256 41.667 0.00 0.00 37.74 3.68
3170 3526 5.211174 ACTTCCCAACTGTCTAGTACAAC 57.789 43.478 0.00 0.00 37.74 3.32
3176 3532 1.404315 GGCGACTTCCCAACTGTCTAG 60.404 57.143 0.00 0.00 0.00 2.43
3183 3539 2.434359 CTCCGGCGACTTCCCAAC 60.434 66.667 9.30 0.00 0.00 3.77
3185 3541 3.379445 GACTCCGGCGACTTCCCA 61.379 66.667 9.30 0.00 0.00 4.37
3186 3542 3.358076 CTGACTCCGGCGACTTCCC 62.358 68.421 9.30 0.00 0.00 3.97
3187 3543 2.182030 CTGACTCCGGCGACTTCC 59.818 66.667 9.30 0.00 0.00 3.46
3203 3559 9.775539 TGATAGAAAATAGCTATGATACTCCCT 57.224 33.333 7.09 0.00 0.00 4.20
3227 3584 3.431673 TGATGTGCCTTATTGTGGTGA 57.568 42.857 0.00 0.00 0.00 4.02
3230 3587 4.987408 TTGATGATGTGCCTTATTGTGG 57.013 40.909 0.00 0.00 0.00 4.17
3240 3597 9.740239 ACTATCATAACAATTTTGATGATGTGC 57.260 29.630 12.90 0.00 38.98 4.57
3301 3658 6.926272 GGTAGAGACATTCTTATGTGTGGATC 59.074 42.308 0.00 0.00 44.90 3.36
3314 3671 5.817296 TGCATGTTGTATGGTAGAGACATTC 59.183 40.000 0.00 0.00 0.00 2.67
3340 3697 8.367660 TGGAAATAAAAACCCACTATGCATTA 57.632 30.769 3.54 0.00 0.00 1.90
3341 3698 7.251321 TGGAAATAAAAACCCACTATGCATT 57.749 32.000 3.54 0.00 0.00 3.56
3342 3699 6.865834 TGGAAATAAAAACCCACTATGCAT 57.134 33.333 3.79 3.79 0.00 3.96
3343 3700 6.405286 CGATGGAAATAAAAACCCACTATGCA 60.405 38.462 0.00 0.00 0.00 3.96
3344 3701 5.977129 CGATGGAAATAAAAACCCACTATGC 59.023 40.000 0.00 0.00 0.00 3.14
3345 3702 7.095695 ACGATGGAAATAAAAACCCACTATG 57.904 36.000 0.00 0.00 0.00 2.23
3346 3703 8.990163 ATACGATGGAAATAAAAACCCACTAT 57.010 30.769 0.00 0.00 0.00 2.12
3347 3704 8.810990 AATACGATGGAAATAAAAACCCACTA 57.189 30.769 0.00 0.00 0.00 2.74
3360 3717 4.101274 TGTCGGGGATAAATACGATGGAAA 59.899 41.667 0.00 0.00 37.69 3.13
3362 3719 3.006110 GTGTCGGGGATAAATACGATGGA 59.994 47.826 0.00 0.00 37.69 3.41
3379 3736 5.613964 AACATAAAAAGCAAAACGTGTCG 57.386 34.783 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.