Multiple sequence alignment - TraesCS3D01G374300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G374300 chr3D 100.000 5904 0 0 1 5904 487806350 487812253 0.000000e+00 10903.0
1 TraesCS3D01G374300 chr3D 91.753 194 12 3 1 191 296431257 296431065 3.510000e-67 267.0
2 TraesCS3D01G374300 chr3A 94.671 3265 110 28 267 3519 631575028 631578240 0.000000e+00 5007.0
3 TraesCS3D01G374300 chr3A 93.463 1438 56 23 3796 5221 631578603 631580014 0.000000e+00 2100.0
4 TraesCS3D01G374300 chr3A 90.435 230 21 1 5675 5904 631580477 631580705 9.620000e-78 302.0
5 TraesCS3D01G374300 chr3A 89.326 178 17 1 5305 5482 631580022 631580197 7.700000e-54 222.0
6 TraesCS3D01G374300 chr3A 88.393 112 10 3 91 202 510186213 510186105 1.340000e-26 132.0
7 TraesCS3D01G374300 chr3A 89.655 87 4 3 201 282 631574925 631575011 8.090000e-19 106.0
8 TraesCS3D01G374300 chr3A 86.667 90 7 2 3553 3638 631578240 631578328 1.750000e-15 95.3
9 TraesCS3D01G374300 chr3B 93.393 3118 100 43 267 3339 650796570 650799626 0.000000e+00 4519.0
10 TraesCS3D01G374300 chr3B 91.148 1525 67 28 3924 5392 650800469 650801981 0.000000e+00 2006.0
11 TraesCS3D01G374300 chr3B 87.417 302 26 8 3338 3634 650799686 650799980 2.640000e-88 337.0
12 TraesCS3D01G374300 chr3B 95.238 189 8 1 5716 5904 650802515 650802702 1.240000e-76 298.0
13 TraesCS3D01G374300 chr3B 92.208 154 11 1 5524 5676 650802023 650802176 3.580000e-52 217.0
14 TraesCS3D01G374300 chr3B 100.000 54 0 0 232 285 650796504 650796557 3.760000e-17 100.0
15 TraesCS3D01G374300 chr3B 97.222 36 1 0 5675 5710 650802220 650802255 1.780000e-05 62.1
16 TraesCS3D01G374300 chr6D 90.244 205 16 3 1 202 2949804 2949601 1.260000e-66 265.0
17 TraesCS3D01G374300 chr1D 90.594 202 15 3 1 199 355475483 355475283 1.260000e-66 265.0
18 TraesCS3D01G374300 chr1D 90.099 101 10 0 2297 2397 365730150 365730050 1.340000e-26 132.0
19 TraesCS3D01G374300 chr4D 89.604 202 16 4 1 199 488484140 488484339 9.820000e-63 252.0
20 TraesCS3D01G374300 chr4D 91.358 81 7 0 1264 1344 52472717 52472637 1.740000e-20 111.0
21 TraesCS3D01G374300 chr2B 91.573 178 7 4 4998 5168 460323032 460323208 7.650000e-59 239.0
22 TraesCS3D01G374300 chr2B 88.608 79 9 0 1266 1344 801162567 801162645 4.870000e-16 97.1
23 TraesCS3D01G374300 chr4A 79.376 417 19 15 5119 5488 618041294 618040898 1.280000e-56 231.0
24 TraesCS3D01G374300 chr4A 79.512 410 19 13 5119 5483 621443073 621443462 1.280000e-56 231.0
25 TraesCS3D01G374300 chr4A 92.593 81 6 0 1264 1344 544198796 544198876 3.740000e-22 117.0
26 TraesCS3D01G374300 chrUn 82.686 283 10 11 5222 5483 472851897 472852161 1.290000e-51 215.0
27 TraesCS3D01G374300 chr1B 91.089 101 9 0 2297 2397 489251925 489251825 2.870000e-28 137.0
28 TraesCS3D01G374300 chr1A 91.089 101 9 0 2297 2397 464839370 464839270 2.870000e-28 137.0
29 TraesCS3D01G374300 chr4B 92.683 82 6 0 1263 1344 76818905 76818824 1.040000e-22 119.0
30 TraesCS3D01G374300 chr5A 85.714 98 12 2 1257 1354 78157969 78158064 1.050000e-17 102.0
31 TraesCS3D01G374300 chr5B 88.889 81 9 0 1264 1344 90507723 90507803 3.760000e-17 100.0
32 TraesCS3D01G374300 chr2D 88.608 79 9 0 1266 1344 640298895 640298817 4.870000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G374300 chr3D 487806350 487812253 5903 False 10903.000000 10903 100.000000 1 5904 1 chr3D.!!$F1 5903
1 TraesCS3D01G374300 chr3A 631574925 631580705 5780 False 1305.383333 5007 90.702833 201 5904 6 chr3A.!!$F1 5703
2 TraesCS3D01G374300 chr3B 650796504 650802702 6198 False 1077.014286 4519 93.803714 232 5904 7 chr3B.!!$F1 5672

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
184 185 0.102663 GCCCTGCGTAAGAGTCTACC 59.897 60.000 0.00 0.0 43.02 3.18 F
1136 1193 1.406180 CCGGGTTCGTTCCTTTGTTTT 59.594 47.619 0.00 0.0 33.95 2.43 F
1578 1642 0.891904 TTCGCTTTACACAAGCCCCC 60.892 55.000 1.05 0.0 40.02 5.40 F
2414 2490 0.179040 TGTCCCTGAACCCACGTTTC 60.179 55.000 0.00 0.0 30.30 2.78 F
3754 4154 0.900421 TGAGCTATGCTGACTGTGCT 59.100 50.000 0.00 0.0 39.88 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1139 1196 0.251742 TAAACGGAGAAGACGGGGGA 60.252 55.0 0.00 0.00 35.23 4.81 R
2117 2193 0.407139 AGGAAAGTGGGCAGCTGATT 59.593 50.0 20.43 1.36 0.00 2.57 R
2951 3053 0.540365 TGCAAGCTTTTGGGAGGGAG 60.540 55.0 0.00 0.00 0.00 4.30 R
3767 4167 0.253894 ATGCCAGTACAGCAGCATGA 59.746 50.0 14.81 0.00 43.99 3.07 R
4933 5350 0.175073 AAGTTCCACGATAGGCCGAC 59.825 55.0 0.00 0.00 43.77 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.443887 TGCAAAGAAAGGCATTGAGC 57.556 45.000 0.00 0.00 44.65 4.26
40 41 1.271876 GCGCTTGGCTATTTTCTTGC 58.728 50.000 0.00 0.00 39.11 4.01
41 42 1.913317 CGCTTGGCTATTTTCTTGCC 58.087 50.000 0.00 0.00 44.98 4.52
44 45 4.690159 GGCTATTTTCTTGCCGCG 57.310 55.556 0.00 0.00 36.02 6.46
45 46 1.586303 GGCTATTTTCTTGCCGCGC 60.586 57.895 0.00 0.00 36.02 6.86
46 47 1.934476 GCTATTTTCTTGCCGCGCG 60.934 57.895 25.67 25.67 0.00 6.86
47 48 1.713246 CTATTTTCTTGCCGCGCGA 59.287 52.632 34.63 9.90 0.00 5.87
48 49 0.315382 CTATTTTCTTGCCGCGCGAG 60.315 55.000 34.63 21.49 41.13 5.03
49 50 1.017177 TATTTTCTTGCCGCGCGAGT 61.017 50.000 34.63 8.66 40.65 4.18
50 51 1.017177 ATTTTCTTGCCGCGCGAGTA 61.017 50.000 34.63 18.31 40.65 2.59
51 52 1.222766 TTTTCTTGCCGCGCGAGTAA 61.223 50.000 34.63 24.05 40.65 2.24
52 53 1.222766 TTTCTTGCCGCGCGAGTAAA 61.223 50.000 34.63 19.69 40.65 2.01
53 54 1.623081 TTCTTGCCGCGCGAGTAAAG 61.623 55.000 34.63 25.54 40.65 1.85
54 55 2.048970 TTGCCGCGCGAGTAAAGA 60.049 55.556 34.63 6.62 0.00 2.52
55 56 1.623081 CTTGCCGCGCGAGTAAAGAA 61.623 55.000 34.63 4.28 35.49 2.52
56 57 1.222766 TTGCCGCGCGAGTAAAGAAA 61.223 50.000 34.63 11.54 0.00 2.52
57 58 1.225664 GCCGCGCGAGTAAAGAAAC 60.226 57.895 34.63 3.02 0.00 2.78
58 59 1.056750 CCGCGCGAGTAAAGAAACG 59.943 57.895 34.63 5.49 0.00 3.60
59 60 1.339235 CCGCGCGAGTAAAGAAACGA 61.339 55.000 34.63 0.00 0.00 3.85
60 61 0.431984 CGCGCGAGTAAAGAAACGAA 59.568 50.000 28.94 0.00 0.00 3.85
61 62 1.777540 CGCGCGAGTAAAGAAACGAAC 60.778 52.381 28.94 0.00 0.00 3.95
62 63 1.777540 GCGCGAGTAAAGAAACGAACG 60.778 52.381 12.10 0.00 0.00 3.95
63 64 1.777540 CGCGAGTAAAGAAACGAACGC 60.778 52.381 0.00 0.00 37.65 4.84
64 65 1.777540 GCGAGTAAAGAAACGAACGCG 60.778 52.381 3.53 3.53 44.79 6.01
65 66 1.201629 CGAGTAAAGAAACGAACGCGG 60.202 52.381 12.47 0.00 43.17 6.46
66 67 1.125566 GAGTAAAGAAACGAACGCGGG 59.874 52.381 12.47 1.02 43.17 6.13
67 68 0.164432 GTAAAGAAACGAACGCGGGG 59.836 55.000 12.47 0.58 43.17 5.73
68 69 1.567746 TAAAGAAACGAACGCGGGGC 61.568 55.000 12.47 0.00 43.17 5.80
84 85 1.481363 GGGGCCTCCGTATATTAGAGC 59.519 57.143 0.84 0.00 0.00 4.09
85 86 2.176889 GGGCCTCCGTATATTAGAGCA 58.823 52.381 0.84 0.00 0.00 4.26
86 87 2.766828 GGGCCTCCGTATATTAGAGCAT 59.233 50.000 0.84 0.00 0.00 3.79
87 88 3.430929 GGGCCTCCGTATATTAGAGCATG 60.431 52.174 0.84 0.00 0.00 4.06
88 89 3.195825 GGCCTCCGTATATTAGAGCATGT 59.804 47.826 0.00 0.00 0.00 3.21
89 90 4.425520 GCCTCCGTATATTAGAGCATGTC 58.574 47.826 0.00 0.00 0.00 3.06
90 91 4.082190 GCCTCCGTATATTAGAGCATGTCA 60.082 45.833 0.00 0.00 0.00 3.58
91 92 5.394663 GCCTCCGTATATTAGAGCATGTCAT 60.395 44.000 0.00 0.00 0.00 3.06
92 93 6.634805 CCTCCGTATATTAGAGCATGTCATT 58.365 40.000 0.00 0.00 0.00 2.57
93 94 7.630728 GCCTCCGTATATTAGAGCATGTCATTA 60.631 40.741 0.00 0.00 0.00 1.90
94 95 7.918033 CCTCCGTATATTAGAGCATGTCATTAG 59.082 40.741 0.00 0.00 0.00 1.73
95 96 7.258441 TCCGTATATTAGAGCATGTCATTAGC 58.742 38.462 0.00 0.00 0.00 3.09
96 97 6.197282 CCGTATATTAGAGCATGTCATTAGCG 59.803 42.308 0.00 0.00 0.00 4.26
97 98 6.291322 CGTATATTAGAGCATGTCATTAGCGC 60.291 42.308 0.00 0.00 0.00 5.92
98 99 2.154854 TAGAGCATGTCATTAGCGCC 57.845 50.000 2.29 0.00 0.00 6.53
99 100 0.467384 AGAGCATGTCATTAGCGCCT 59.533 50.000 2.29 0.00 0.00 5.52
100 101 1.134280 AGAGCATGTCATTAGCGCCTT 60.134 47.619 2.29 0.00 0.00 4.35
101 102 1.003116 GAGCATGTCATTAGCGCCTTG 60.003 52.381 2.29 0.00 0.00 3.61
102 103 0.593263 GCATGTCATTAGCGCCTTGC 60.593 55.000 2.29 3.86 46.98 4.01
113 114 4.954933 GCCTTGCGTTGGAGGATA 57.045 55.556 0.00 0.00 34.91 2.59
114 115 3.168773 GCCTTGCGTTGGAGGATAA 57.831 52.632 0.00 0.00 34.91 1.75
115 116 1.459450 GCCTTGCGTTGGAGGATAAA 58.541 50.000 0.00 0.00 34.91 1.40
116 117 1.401905 GCCTTGCGTTGGAGGATAAAG 59.598 52.381 0.00 0.00 34.91 1.85
117 118 1.401905 CCTTGCGTTGGAGGATAAAGC 59.598 52.381 0.00 0.00 34.91 3.51
118 119 2.359900 CTTGCGTTGGAGGATAAAGCT 58.640 47.619 0.00 0.00 34.36 3.74
119 120 2.024176 TGCGTTGGAGGATAAAGCTC 57.976 50.000 0.00 0.00 34.36 4.09
120 121 1.300481 GCGTTGGAGGATAAAGCTCC 58.700 55.000 0.00 0.00 37.75 4.70
122 123 2.102588 GCGTTGGAGGATAAAGCTCCTA 59.897 50.000 0.00 0.00 45.89 2.94
123 124 3.800604 GCGTTGGAGGATAAAGCTCCTAG 60.801 52.174 0.00 0.00 45.89 3.02
124 125 3.734463 GTTGGAGGATAAAGCTCCTAGC 58.266 50.000 0.00 0.00 45.89 3.42
140 141 6.918626 GCTCCTAGCTCTTTTTCAATTTTCT 58.081 36.000 0.00 0.00 38.45 2.52
141 142 6.805760 GCTCCTAGCTCTTTTTCAATTTTCTG 59.194 38.462 0.00 0.00 38.45 3.02
142 143 6.681777 TCCTAGCTCTTTTTCAATTTTCTGC 58.318 36.000 0.00 0.00 0.00 4.26
143 144 6.491403 TCCTAGCTCTTTTTCAATTTTCTGCT 59.509 34.615 0.00 0.00 0.00 4.24
144 145 7.665559 TCCTAGCTCTTTTTCAATTTTCTGCTA 59.334 33.333 0.00 0.00 0.00 3.49
145 146 8.465201 CCTAGCTCTTTTTCAATTTTCTGCTAT 58.535 33.333 0.00 0.00 0.00 2.97
146 147 9.852091 CTAGCTCTTTTTCAATTTTCTGCTATT 57.148 29.630 0.00 0.00 0.00 1.73
168 169 1.950758 TTTTTCACCGTAAGCGCCC 59.049 52.632 2.29 0.00 36.67 6.13
169 170 0.535553 TTTTTCACCGTAAGCGCCCT 60.536 50.000 2.29 0.00 36.67 5.19
170 171 1.231958 TTTTCACCGTAAGCGCCCTG 61.232 55.000 2.29 0.00 36.67 4.45
171 172 4.752879 TCACCGTAAGCGCCCTGC 62.753 66.667 2.29 0.00 46.98 4.85
183 184 3.644774 GCCCTGCGTAAGAGTCTAC 57.355 57.895 0.00 0.00 43.02 2.59
184 185 0.102663 GCCCTGCGTAAGAGTCTACC 59.897 60.000 0.00 0.00 43.02 3.18
185 186 1.471119 CCCTGCGTAAGAGTCTACCA 58.529 55.000 0.00 0.00 43.02 3.25
186 187 2.032620 CCCTGCGTAAGAGTCTACCAT 58.967 52.381 0.00 0.00 43.02 3.55
187 188 2.431057 CCCTGCGTAAGAGTCTACCATT 59.569 50.000 0.00 0.00 43.02 3.16
188 189 3.448686 CCTGCGTAAGAGTCTACCATTG 58.551 50.000 0.00 0.00 43.02 2.82
189 190 3.119101 CCTGCGTAAGAGTCTACCATTGT 60.119 47.826 0.00 0.00 43.02 2.71
190 191 4.097437 CCTGCGTAAGAGTCTACCATTGTA 59.903 45.833 0.00 0.00 43.02 2.41
191 192 5.244785 TGCGTAAGAGTCTACCATTGTAG 57.755 43.478 0.00 0.00 42.79 2.74
192 193 4.945543 TGCGTAAGAGTCTACCATTGTAGA 59.054 41.667 2.58 2.58 45.80 2.59
202 203 5.402630 TCTACCATTGTAGATGCCCTGATA 58.597 41.667 2.58 0.00 46.64 2.15
207 208 5.477510 CATTGTAGATGCCCTGATACTCTC 58.522 45.833 0.00 0.00 0.00 3.20
289 327 6.257193 ACAAAGATACGATAAAGTAAAGCCGG 59.743 38.462 0.00 0.00 0.00 6.13
507 547 3.423154 CCAGCGGCGAACAGGAAC 61.423 66.667 12.98 0.00 0.00 3.62
508 548 3.423154 CAGCGGCGAACAGGAACC 61.423 66.667 12.98 0.00 0.00 3.62
509 549 3.936203 AGCGGCGAACAGGAACCA 61.936 61.111 12.98 0.00 0.00 3.67
510 550 3.423154 GCGGCGAACAGGAACCAG 61.423 66.667 12.98 0.00 0.00 4.00
515 555 1.672356 CGAACAGGAACCAGCCAGG 60.672 63.158 0.00 0.00 45.67 4.45
1136 1193 1.406180 CCGGGTTCGTTCCTTTGTTTT 59.594 47.619 0.00 0.00 33.95 2.43
1139 1196 3.181494 CGGGTTCGTTCCTTTGTTTTCTT 60.181 43.478 0.00 0.00 0.00 2.52
1148 1205 2.583143 CTTTGTTTTCTTCCCCCGTCT 58.417 47.619 0.00 0.00 0.00 4.18
1223 1286 2.594592 GTGGCTTGCTTGTCCGGT 60.595 61.111 0.00 0.00 0.00 5.28
1368 1431 1.726248 GCAAAAATTCGTCCACATGGC 59.274 47.619 0.00 0.00 34.44 4.40
1497 1561 4.708726 AATTCTCTTAACTGCATGTGGC 57.291 40.909 0.00 0.00 45.13 5.01
1578 1642 0.891904 TTCGCTTTACACAAGCCCCC 60.892 55.000 1.05 0.00 40.02 5.40
1621 1685 3.316308 GGGCATGGATTCTCATGTTACAC 59.684 47.826 13.29 0.37 44.54 2.90
1633 1697 1.807139 TGTTACACATGCATGTCGCT 58.193 45.000 29.23 16.39 43.06 4.93
1674 1738 5.577945 GTGGCAATTATTCACCTGAAACATG 59.422 40.000 0.00 0.00 37.61 3.21
1722 1786 6.686630 TGTAATAGCACAAACTTTTGATGGG 58.313 36.000 8.69 0.00 40.55 4.00
1954 2018 6.049955 AGGTCTCGTGATTTATTCCTCAAA 57.950 37.500 0.00 0.00 0.00 2.69
2126 2202 9.918630 ATAATAATTTACATCCAAATCAGCTGC 57.081 29.630 9.47 0.00 0.00 5.25
2127 2203 4.660789 ATTTACATCCAAATCAGCTGCC 57.339 40.909 9.47 0.00 0.00 4.85
2199 2275 4.866921 AGTTTCTTTTATGTTTCACGGCC 58.133 39.130 0.00 0.00 0.00 6.13
2215 2291 0.236449 GGCCGGTTTCACTGTTAACG 59.764 55.000 1.90 0.00 0.00 3.18
2374 2450 2.017049 GCTCCACGGCTCAAAATATGT 58.983 47.619 0.00 0.00 0.00 2.29
2380 2456 5.184864 TCCACGGCTCAAAATATGTGATTTT 59.815 36.000 0.00 0.00 0.00 1.82
2410 2486 1.599797 GGTTGTCCCTGAACCCACG 60.600 63.158 0.00 0.00 37.49 4.94
2412 2488 0.464916 GTTGTCCCTGAACCCACGTT 60.465 55.000 0.00 0.00 33.88 3.99
2414 2490 0.179040 TGTCCCTGAACCCACGTTTC 60.179 55.000 0.00 0.00 30.30 2.78
2422 2498 1.672363 GAACCCACGTTTCGAACCTTT 59.328 47.619 0.00 0.00 30.30 3.11
2462 2538 9.261180 CTGTAAATTCTCACAGAAACTGTTCTA 57.739 33.333 8.42 0.00 42.59 2.10
2488 2564 5.757320 CCATTTCTGGATCAGTCATCAGTAC 59.243 44.000 0.00 0.00 46.37 2.73
2556 2632 4.301027 GAGGTGCTATCCCGCCGG 62.301 72.222 0.00 0.00 40.31 6.13
2583 2659 7.633789 AGTATGATGGAAAGGTGAGTTTGTAT 58.366 34.615 0.00 0.00 0.00 2.29
2667 2744 5.929992 TGTTAGGTCATTAGAACAAACCTCG 59.070 40.000 0.00 0.00 40.69 4.63
2696 2773 6.720112 AGGCATTGTATGTGCAAATATCTT 57.280 33.333 0.00 0.00 44.25 2.40
2754 2855 9.630098 AGTATGCAAGTTTTACTCATGATTTTG 57.370 29.630 0.00 0.00 0.00 2.44
2761 2862 8.807667 AGTTTTACTCATGATTTTGCTGAAAG 57.192 30.769 0.00 0.00 0.00 2.62
2766 2867 7.275888 ACTCATGATTTTGCTGAAAGTTACA 57.724 32.000 0.00 0.00 35.30 2.41
2798 2899 1.238439 TTTCGCCAAGCCTTTCTGAG 58.762 50.000 0.00 0.00 0.00 3.35
2810 2911 4.944317 AGCCTTTCTGAGTGGTTAAATAGC 59.056 41.667 1.15 0.00 0.00 2.97
2840 2941 6.402226 GCCTTGACACTATTTAAACTTCTCCG 60.402 42.308 0.00 0.00 0.00 4.63
2895 2996 7.708752 TCATGATTGTGACGTTACATATGCTTA 59.291 33.333 14.42 0.00 0.00 3.09
2918 3020 5.583932 AGCCCCTCAATTAATCAAAAGTCT 58.416 37.500 0.00 0.00 0.00 3.24
2951 3053 1.454201 GCACTCCAAGGCTAAAGGAC 58.546 55.000 0.00 0.00 0.00 3.85
2953 3055 2.937433 GCACTCCAAGGCTAAAGGACTC 60.937 54.545 0.00 0.00 29.44 3.36
2957 3059 1.210722 CCAAGGCTAAAGGACTCCCTC 59.789 57.143 0.00 0.00 43.48 4.30
2976 3078 3.181472 CCTCCCAAAAGCTTGCATTATCC 60.181 47.826 0.00 0.00 0.00 2.59
2987 3089 2.109774 TGCATTATCCAAAAGCAGGGG 58.890 47.619 0.00 0.00 0.00 4.79
3004 3106 7.365497 AGCAGGGGAAATATTTTAGGAAATG 57.635 36.000 1.43 0.00 36.22 2.32
3006 3108 6.183361 GCAGGGGAAATATTTTAGGAAATGCT 60.183 38.462 1.43 0.00 36.22 3.79
3392 3555 3.009363 GGTAGGTAGGTTTGCCTGGTAAA 59.991 47.826 5.81 5.81 46.47 2.01
3395 3558 4.747583 AGGTAGGTTTGCCTGGTAAAAAT 58.252 39.130 11.63 6.18 46.47 1.82
3424 3587 3.625897 CGCGGCCCCTATCATGGA 61.626 66.667 0.00 0.00 0.00 3.41
3513 3676 7.221067 CGAAGTCTAACTTTTAGAGCATGGTAG 59.779 40.741 0.00 0.00 38.80 3.18
3537 3700 4.290093 TGCACCTAGATCTACAGAACCAT 58.710 43.478 0.00 0.00 0.00 3.55
3538 3701 5.454966 TGCACCTAGATCTACAGAACCATA 58.545 41.667 0.00 0.00 0.00 2.74
3539 3702 5.302059 TGCACCTAGATCTACAGAACCATAC 59.698 44.000 0.00 0.00 0.00 2.39
3541 3704 5.833667 CACCTAGATCTACAGAACCATACCA 59.166 44.000 0.00 0.00 0.00 3.25
3542 3705 6.495181 CACCTAGATCTACAGAACCATACCAT 59.505 42.308 0.00 0.00 0.00 3.55
3544 3707 7.670559 ACCTAGATCTACAGAACCATACCATAC 59.329 40.741 0.00 0.00 0.00 2.39
3545 3708 7.670140 CCTAGATCTACAGAACCATACCATACA 59.330 40.741 0.00 0.00 0.00 2.29
3551 3714 9.154632 TCTACAGAACCATACCATACAACATAT 57.845 33.333 0.00 0.00 0.00 1.78
3566 3729 9.006839 CATACAACATATATGCAAGGATGTCTT 57.993 33.333 12.79 4.77 31.37 3.01
3617 3784 7.227314 GTGATGTCATGGCTTGATACAAAGATA 59.773 37.037 6.35 0.00 36.54 1.98
3624 3791 7.087409 TGGCTTGATACAAAGATACATTGTG 57.913 36.000 0.00 0.00 40.95 3.33
3634 3801 7.839907 ACAAAGATACATTGTGTTGGCATATT 58.160 30.769 0.00 0.00 39.43 1.28
3635 3802 8.965819 ACAAAGATACATTGTGTTGGCATATTA 58.034 29.630 0.00 0.00 39.43 0.98
3639 3806 9.353431 AGATACATTGTGTTGGCATATTATTCA 57.647 29.630 0.00 0.00 0.00 2.57
3640 3807 9.616634 GATACATTGTGTTGGCATATTATTCAG 57.383 33.333 0.00 0.00 0.00 3.02
3641 3808 7.408756 ACATTGTGTTGGCATATTATTCAGT 57.591 32.000 0.00 0.00 0.00 3.41
3643 3810 6.449635 TTGTGTTGGCATATTATTCAGTCC 57.550 37.500 0.00 0.00 0.00 3.85
3644 3811 5.504853 TGTGTTGGCATATTATTCAGTCCA 58.495 37.500 0.00 0.00 0.00 4.02
3645 3812 5.356751 TGTGTTGGCATATTATTCAGTCCAC 59.643 40.000 0.00 0.00 0.00 4.02
3646 3813 5.356751 GTGTTGGCATATTATTCAGTCCACA 59.643 40.000 0.00 0.00 0.00 4.17
3647 3814 6.039717 GTGTTGGCATATTATTCAGTCCACAT 59.960 38.462 0.00 0.00 0.00 3.21
3648 3815 6.606796 TGTTGGCATATTATTCAGTCCACATT 59.393 34.615 0.00 0.00 0.00 2.71
3649 3816 6.638096 TGGCATATTATTCAGTCCACATTG 57.362 37.500 0.00 0.00 0.00 2.82
3650 3817 6.128486 TGGCATATTATTCAGTCCACATTGT 58.872 36.000 0.00 0.00 0.00 2.71
3652 3819 7.445096 TGGCATATTATTCAGTCCACATTGTAG 59.555 37.037 0.00 0.00 0.00 2.74
3653 3820 7.301054 GCATATTATTCAGTCCACATTGTAGC 58.699 38.462 0.00 0.00 0.00 3.58
3654 3821 7.041167 GCATATTATTCAGTCCACATTGTAGCA 60.041 37.037 0.00 0.00 0.00 3.49
3655 3822 6.683974 ATTATTCAGTCCACATTGTAGCAC 57.316 37.500 0.00 0.00 0.00 4.40
3656 3823 3.483808 TTCAGTCCACATTGTAGCACA 57.516 42.857 0.00 0.00 0.00 4.57
3657 3824 3.701205 TCAGTCCACATTGTAGCACAT 57.299 42.857 0.00 0.00 0.00 3.21
3659 3826 3.076621 CAGTCCACATTGTAGCACATGT 58.923 45.455 0.00 0.00 0.00 3.21
3660 3827 3.076621 AGTCCACATTGTAGCACATGTG 58.923 45.455 21.83 21.83 37.36 3.21
3661 3828 2.813754 GTCCACATTGTAGCACATGTGT 59.186 45.455 26.01 15.36 36.65 3.72
3662 3829 3.253188 GTCCACATTGTAGCACATGTGTT 59.747 43.478 26.01 22.78 36.65 3.32
3663 3830 3.501828 TCCACATTGTAGCACATGTGTTC 59.498 43.478 26.01 16.44 36.65 3.18
3664 3831 3.252944 CCACATTGTAGCACATGTGTTCA 59.747 43.478 26.01 18.55 36.65 3.18
3665 3832 4.469552 CACATTGTAGCACATGTGTTCAG 58.530 43.478 26.01 12.52 35.20 3.02
3685 4085 9.862371 TGTTCAGTTCAGTTATTTTGCTTTAAA 57.138 25.926 0.00 0.00 0.00 1.52
3691 4091 9.862585 GTTCAGTTATTTTGCTTTAAACATTGG 57.137 29.630 0.00 0.00 0.00 3.16
3710 4110 9.574516 AACATTGGTATTTCTTACTCAACTTCT 57.425 29.630 0.00 0.00 0.00 2.85
3712 4112 9.831737 CATTGGTATTTCTTACTCAACTTCTTG 57.168 33.333 0.00 0.00 0.00 3.02
3713 4113 9.793259 ATTGGTATTTCTTACTCAACTTCTTGA 57.207 29.630 0.00 0.00 35.04 3.02
3715 4115 9.793259 TGGTATTTCTTACTCAACTTCTTGAAT 57.207 29.630 0.00 0.00 35.92 2.57
3726 4126 9.236006 ACTCAACTTCTTGAATGTAATATGCTT 57.764 29.630 0.00 0.00 35.92 3.91
3744 4144 6.981762 ATGCTTATGTTAGATGAGCTATGC 57.018 37.500 7.56 0.00 34.56 3.14
3745 4145 6.106648 TGCTTATGTTAGATGAGCTATGCT 57.893 37.500 7.56 0.00 43.88 3.79
3746 4146 5.930569 TGCTTATGTTAGATGAGCTATGCTG 59.069 40.000 7.56 0.00 39.88 4.41
3747 4147 6.162079 GCTTATGTTAGATGAGCTATGCTGA 58.838 40.000 0.00 0.00 39.88 4.26
3748 4148 6.090628 GCTTATGTTAGATGAGCTATGCTGAC 59.909 42.308 0.00 0.00 39.88 3.51
3750 4150 4.941657 TGTTAGATGAGCTATGCTGACTG 58.058 43.478 0.00 0.00 39.88 3.51
3751 4151 4.403752 TGTTAGATGAGCTATGCTGACTGT 59.596 41.667 0.00 0.00 39.88 3.55
3752 4152 3.455990 AGATGAGCTATGCTGACTGTG 57.544 47.619 0.00 0.00 39.88 3.66
3753 4153 1.865970 GATGAGCTATGCTGACTGTGC 59.134 52.381 0.00 0.00 39.88 4.57
3754 4154 0.900421 TGAGCTATGCTGACTGTGCT 59.100 50.000 0.00 0.00 39.88 4.40
3756 4156 1.932511 GAGCTATGCTGACTGTGCTTC 59.067 52.381 0.00 0.00 39.88 3.86
3757 4157 1.277273 AGCTATGCTGACTGTGCTTCA 59.723 47.619 0.00 0.00 37.57 3.02
3758 4158 1.396301 GCTATGCTGACTGTGCTTCAC 59.604 52.381 0.00 0.00 34.56 3.18
3759 4159 2.691927 CTATGCTGACTGTGCTTCACA 58.308 47.619 0.00 0.00 42.45 3.58
3760 4160 2.195741 ATGCTGACTGTGCTTCACAT 57.804 45.000 0.00 0.00 43.71 3.21
3761 4161 1.971481 TGCTGACTGTGCTTCACATT 58.029 45.000 0.00 0.00 43.71 2.71
3764 4164 3.243168 TGCTGACTGTGCTTCACATTTTC 60.243 43.478 0.00 0.00 43.71 2.29
3765 4165 3.004106 GCTGACTGTGCTTCACATTTTCT 59.996 43.478 0.00 0.00 43.71 2.52
3767 4167 5.581126 TGACTGTGCTTCACATTTTCTTT 57.419 34.783 0.00 0.00 43.71 2.52
3768 4168 5.581605 TGACTGTGCTTCACATTTTCTTTC 58.418 37.500 0.00 0.00 43.71 2.62
3769 4169 5.125257 TGACTGTGCTTCACATTTTCTTTCA 59.875 36.000 0.00 0.00 43.71 2.69
3771 4171 5.981315 ACTGTGCTTCACATTTTCTTTCATG 59.019 36.000 0.00 0.00 43.71 3.07
3773 4173 4.986659 GTGCTTCACATTTTCTTTCATGCT 59.013 37.500 0.00 0.00 34.08 3.79
3774 4174 4.986034 TGCTTCACATTTTCTTTCATGCTG 59.014 37.500 0.00 0.00 0.00 4.41
3775 4175 4.143179 GCTTCACATTTTCTTTCATGCTGC 60.143 41.667 0.00 0.00 0.00 5.25
3776 4176 4.859304 TCACATTTTCTTTCATGCTGCT 57.141 36.364 0.00 0.00 0.00 4.24
3777 4177 4.552355 TCACATTTTCTTTCATGCTGCTG 58.448 39.130 0.00 0.00 0.00 4.41
3778 4178 4.038282 TCACATTTTCTTTCATGCTGCTGT 59.962 37.500 0.00 0.00 0.00 4.40
3779 4179 5.241285 TCACATTTTCTTTCATGCTGCTGTA 59.759 36.000 0.00 0.00 0.00 2.74
3780 4180 5.344128 CACATTTTCTTTCATGCTGCTGTAC 59.656 40.000 0.00 0.00 0.00 2.90
3781 4181 5.242393 ACATTTTCTTTCATGCTGCTGTACT 59.758 36.000 0.00 0.00 0.00 2.73
3782 4182 4.754372 TTTCTTTCATGCTGCTGTACTG 57.246 40.909 0.00 0.00 0.00 2.74
3783 4183 2.703416 TCTTTCATGCTGCTGTACTGG 58.297 47.619 0.00 0.00 0.00 4.00
3784 4184 1.131883 CTTTCATGCTGCTGTACTGGC 59.868 52.381 0.00 3.41 0.00 4.85
3785 4185 0.036590 TTCATGCTGCTGTACTGGCA 59.963 50.000 12.10 12.10 39.06 4.92
3786 4186 0.253894 TCATGCTGCTGTACTGGCAT 59.746 50.000 12.84 11.17 44.77 4.40
3787 4187 2.789842 ATGCTGCTGTACTGGCATG 58.210 52.632 13.16 9.52 42.71 4.06
3788 4188 0.253894 ATGCTGCTGTACTGGCATGA 59.746 50.000 13.16 5.70 42.71 3.07
3789 4189 0.036590 TGCTGCTGTACTGGCATGAA 59.963 50.000 12.84 2.51 39.07 2.57
3790 4190 1.340308 TGCTGCTGTACTGGCATGAAT 60.340 47.619 12.84 0.00 39.07 2.57
3791 4191 1.747355 GCTGCTGTACTGGCATGAATT 59.253 47.619 12.84 0.00 39.07 2.17
3792 4192 2.945008 GCTGCTGTACTGGCATGAATTA 59.055 45.455 12.84 0.00 39.07 1.40
3793 4193 3.567164 GCTGCTGTACTGGCATGAATTAT 59.433 43.478 12.84 0.00 39.07 1.28
3794 4194 4.037208 GCTGCTGTACTGGCATGAATTATT 59.963 41.667 12.84 0.00 39.07 1.40
3818 4225 6.037786 AGTATGCTAGCACACTGAAACTTA 57.962 37.500 27.24 5.57 31.85 2.24
3819 4226 6.644347 AGTATGCTAGCACACTGAAACTTAT 58.356 36.000 27.24 5.86 31.85 1.73
3820 4227 7.106239 AGTATGCTAGCACACTGAAACTTATT 58.894 34.615 27.24 5.40 31.85 1.40
3822 4229 6.633500 TGCTAGCACACTGAAACTTATTTT 57.367 33.333 14.93 0.00 0.00 1.82
3824 4231 8.160521 TGCTAGCACACTGAAACTTATTTTAA 57.839 30.769 14.93 0.00 0.00 1.52
3825 4232 8.073768 TGCTAGCACACTGAAACTTATTTTAAC 58.926 33.333 14.93 0.00 0.00 2.01
3826 4233 8.073768 GCTAGCACACTGAAACTTATTTTAACA 58.926 33.333 10.63 0.00 0.00 2.41
3830 4237 8.003784 GCACACTGAAACTTATTTTAACAATGC 58.996 33.333 0.00 0.00 0.00 3.56
3851 4258 5.822204 TGCAAGGAACCTTTAGGCTAAATA 58.178 37.500 19.32 0.00 39.32 1.40
3860 4267 9.833917 GAACCTTTAGGCTAAATAGAATAGTGT 57.166 33.333 19.32 4.68 39.32 3.55
3876 4283 6.423001 AGAATAGTGTAACAACAGAACGGAAC 59.577 38.462 0.00 0.00 41.43 3.62
3878 4285 3.869246 AGTGTAACAACAGAACGGAACTG 59.131 43.478 0.00 0.00 41.43 3.16
3881 4288 1.014352 ACAACAGAACGGAACTGCAC 58.986 50.000 0.00 0.00 38.74 4.57
3882 4289 0.307760 CAACAGAACGGAACTGCACC 59.692 55.000 0.00 0.00 38.74 5.01
3884 4291 0.107410 ACAGAACGGAACTGCACCAA 60.107 50.000 0.00 0.00 38.74 3.67
3885 4292 1.021202 CAGAACGGAACTGCACCAAA 58.979 50.000 0.00 0.00 0.00 3.28
3886 4293 1.608590 CAGAACGGAACTGCACCAAAT 59.391 47.619 0.00 0.00 0.00 2.32
3887 4294 1.608590 AGAACGGAACTGCACCAAATG 59.391 47.619 0.00 0.00 0.00 2.32
3889 4296 1.686355 ACGGAACTGCACCAAATGAA 58.314 45.000 0.00 0.00 0.00 2.57
3890 4297 2.028130 ACGGAACTGCACCAAATGAAA 58.972 42.857 0.00 0.00 0.00 2.69
3891 4298 2.034558 ACGGAACTGCACCAAATGAAAG 59.965 45.455 0.00 0.00 0.00 2.62
3892 4299 2.034558 CGGAACTGCACCAAATGAAAGT 59.965 45.455 0.00 0.00 0.00 2.66
3893 4300 3.383761 GGAACTGCACCAAATGAAAGTG 58.616 45.455 0.00 0.00 29.72 3.16
3895 4302 4.262164 GGAACTGCACCAAATGAAAGTGAT 60.262 41.667 0.00 0.00 33.21 3.06
3897 4304 4.874970 ACTGCACCAAATGAAAGTGATTC 58.125 39.130 0.00 0.00 38.60 2.52
3915 4322 6.127810 TGATTCAGCAATCAAGCATAAGTC 57.872 37.500 0.00 0.00 44.56 3.01
3916 4323 4.970662 TTCAGCAATCAAGCATAAGTCC 57.029 40.909 0.00 0.00 36.85 3.85
3920 4327 3.887716 AGCAATCAAGCATAAGTCCCATC 59.112 43.478 0.00 0.00 36.85 3.51
3971 4378 2.577700 ACACAATTTTCCTGTGCGGTA 58.422 42.857 2.96 0.00 46.64 4.02
4059 4468 3.102052 TGTCGGTCCTGAACTTTGTAC 57.898 47.619 0.00 0.00 0.00 2.90
4061 4470 0.788391 CGGTCCTGAACTTTGTACGC 59.212 55.000 0.00 0.00 0.00 4.42
4088 4503 8.904834 CGTCCTAATGGTATTAGCTAGTATGAT 58.095 37.037 0.00 0.00 34.23 2.45
4126 4543 8.908786 TTGAGCTATACTAATTAGCAGCAATT 57.091 30.769 24.74 12.42 39.16 2.32
4223 4640 1.741028 TTGAAGACCAGGATGACCCA 58.259 50.000 0.00 0.00 39.69 4.51
4293 4710 5.009010 ACGCAGATTTATCCTATTTTGGCTG 59.991 40.000 0.00 0.00 0.00 4.85
4296 4713 6.264067 GCAGATTTATCCTATTTTGGCTGACT 59.736 38.462 0.00 0.00 0.00 3.41
4313 4730 4.261572 GCTGACTGTATTTCCTTTTGCACA 60.262 41.667 0.00 0.00 0.00 4.57
4337 4754 3.686227 AATGACCCTCATTATGGCCAA 57.314 42.857 10.96 0.00 44.57 4.52
4479 4896 4.520492 ACCTCAAACTGTATCTTTTGCCTG 59.480 41.667 0.00 0.00 33.50 4.85
4548 4965 4.661125 TGACGTGATAATTTGAATGCTGC 58.339 39.130 0.00 0.00 0.00 5.25
4654 5071 4.042187 GCCATGTACTTCAGGAGGGATAAT 59.958 45.833 0.00 0.00 0.00 1.28
4669 5086 2.427095 GGATAATGCCGTGCCTTCTTTT 59.573 45.455 0.00 0.00 0.00 2.27
4672 5089 1.327303 ATGCCGTGCCTTCTTTTTCA 58.673 45.000 0.00 0.00 0.00 2.69
4768 5185 2.227757 TTGGGGCGATGAGGGTTCA 61.228 57.895 0.00 0.00 37.81 3.18
4933 5350 5.530171 TGCGGAGTAAGTTACCTGTAGATAG 59.470 44.000 9.46 0.00 0.00 2.08
4967 5384 2.435586 CTTCTGCGCTCAGTGGGG 60.436 66.667 9.73 0.00 41.10 4.96
4979 5396 3.055891 GCTCAGTGGGGTATGCAATTTTT 60.056 43.478 0.00 0.00 0.00 1.94
4980 5397 4.497300 CTCAGTGGGGTATGCAATTTTTG 58.503 43.478 0.00 0.00 0.00 2.44
5168 5591 3.823873 TGTCCAGCGGTTCATGTTTAAAT 59.176 39.130 0.00 0.00 0.00 1.40
5242 5690 1.605710 CAGTGCTTGAAGTGGTCCTTG 59.394 52.381 0.00 0.00 32.03 3.61
5280 5728 1.643868 TACTTGAAATGCCAGGCGCG 61.644 55.000 7.03 0.00 42.08 6.86
5281 5729 2.981560 CTTGAAATGCCAGGCGCGT 61.982 57.895 8.43 0.00 42.08 6.01
5283 5731 2.504681 GAAATGCCAGGCGCGTTG 60.505 61.111 8.43 6.89 46.27 4.10
5284 5732 3.267597 GAAATGCCAGGCGCGTTGT 62.268 57.895 8.43 0.00 46.27 3.32
5341 5800 4.407296 GGATACACCCTCTTCAGAATGTCT 59.593 45.833 0.00 0.00 37.40 3.41
5361 5820 4.686554 GTCTCTGTGCTACTTTTGGTACAG 59.313 45.833 0.00 0.00 43.84 2.74
5392 5856 0.330267 ACCAACCCATCCTAAACCGG 59.670 55.000 0.00 0.00 0.00 5.28
5402 5866 5.457052 CCCATCCTAAACCGGTACCAAATAT 60.457 44.000 8.00 0.00 0.00 1.28
5431 5895 2.352422 GGTGCAGCCATCTCCACA 59.648 61.111 4.03 0.00 37.17 4.17
5467 5931 1.348064 AGCACCACCTACAGCTACAA 58.652 50.000 0.00 0.00 35.19 2.41
5472 5936 1.207329 CCACCTACAGCTACAACTCCC 59.793 57.143 0.00 0.00 0.00 4.30
5475 5939 2.976882 ACCTACAGCTACAACTCCCAAA 59.023 45.455 0.00 0.00 0.00 3.28
5483 5984 3.007614 GCTACAACTCCCAAACTGGTAGA 59.992 47.826 0.00 0.00 35.17 2.59
5501 6002 2.086869 AGACATGCCAGGATTCAAACG 58.913 47.619 0.00 0.00 0.00 3.60
5507 6008 2.955660 TGCCAGGATTCAAACGTTCTTT 59.044 40.909 0.00 0.00 0.00 2.52
5509 6010 4.215399 TGCCAGGATTCAAACGTTCTTTAG 59.785 41.667 0.00 0.00 0.00 1.85
5516 6017 5.630896 TTCAAACGTTCTTTAGTGTCTCG 57.369 39.130 0.00 0.00 0.00 4.04
5522 6023 4.512944 ACGTTCTTTAGTGTCTCGACAGTA 59.487 41.667 9.86 9.86 42.72 2.74
5612 6113 2.911102 GCTGCTCGATTTGCAACTAAAC 59.089 45.455 0.00 0.00 40.13 2.01
5651 6153 6.332735 AGAAAGTAAAAGAACCAAGATGCC 57.667 37.500 0.00 0.00 0.00 4.40
5702 6259 3.319972 GGAACATCAACATAGCATGGCAT 59.680 43.478 0.00 0.00 33.60 4.40
5711 6268 8.060931 TCAACATAGCATGGCATAAGTAAAAA 57.939 30.769 0.00 0.00 33.60 1.94
5745 6556 3.927142 ACGCTGTTCAGCTATGTTTAGAC 59.073 43.478 20.12 0.00 0.00 2.59
5763 6574 4.917906 AGACAGAATTACAGGAGCCTTT 57.082 40.909 0.00 0.00 0.00 3.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.176708 CTCAATGCCTTTCTTTGCATCG 58.823 45.455 0.00 0.00 46.97 3.84
1 2 2.928116 GCTCAATGCCTTTCTTTGCATC 59.072 45.455 0.00 0.00 46.97 3.91
3 4 1.336148 CGCTCAATGCCTTTCTTTGCA 60.336 47.619 0.00 0.00 42.52 4.08
4 5 1.343506 CGCTCAATGCCTTTCTTTGC 58.656 50.000 0.00 0.00 38.78 3.68
5 6 1.068055 AGCGCTCAATGCCTTTCTTTG 60.068 47.619 2.64 0.00 38.78 2.77
6 7 1.251251 AGCGCTCAATGCCTTTCTTT 58.749 45.000 2.64 0.00 38.78 2.52
7 8 1.068055 CAAGCGCTCAATGCCTTTCTT 60.068 47.619 12.06 0.00 38.78 2.52
8 9 0.524862 CAAGCGCTCAATGCCTTTCT 59.475 50.000 12.06 0.00 38.78 2.52
9 10 0.457337 CCAAGCGCTCAATGCCTTTC 60.457 55.000 12.06 0.00 38.78 2.62
10 11 1.588082 CCAAGCGCTCAATGCCTTT 59.412 52.632 12.06 0.00 38.78 3.11
11 12 2.998279 GCCAAGCGCTCAATGCCTT 61.998 57.895 12.06 0.00 38.78 4.35
12 13 3.446570 GCCAAGCGCTCAATGCCT 61.447 61.111 12.06 0.00 38.78 4.75
21 22 1.271876 GCAAGAAAATAGCCAAGCGC 58.728 50.000 0.00 0.00 37.98 5.92
27 28 1.586303 GCGCGGCAAGAAAATAGCC 60.586 57.895 8.83 0.00 44.89 3.93
28 29 1.934476 CGCGCGGCAAGAAAATAGC 60.934 57.895 24.84 0.00 0.00 2.97
29 30 0.315382 CTCGCGCGGCAAGAAAATAG 60.315 55.000 31.69 11.89 0.00 1.73
30 31 1.017177 ACTCGCGCGGCAAGAAAATA 61.017 50.000 31.69 4.97 0.00 1.40
31 32 1.017177 TACTCGCGCGGCAAGAAAAT 61.017 50.000 31.69 6.52 0.00 1.82
32 33 1.222766 TTACTCGCGCGGCAAGAAAA 61.223 50.000 31.69 15.96 0.00 2.29
33 34 1.222766 TTTACTCGCGCGGCAAGAAA 61.223 50.000 31.69 19.01 0.00 2.52
34 35 1.623081 CTTTACTCGCGCGGCAAGAA 61.623 55.000 31.69 16.72 0.00 2.52
35 36 2.048970 TTTACTCGCGCGGCAAGA 60.049 55.556 31.69 9.28 0.00 3.02
36 37 1.623081 TTCTTTACTCGCGCGGCAAG 61.623 55.000 31.69 22.42 0.00 4.01
37 38 1.222766 TTTCTTTACTCGCGCGGCAA 61.223 50.000 31.69 18.07 0.00 4.52
38 39 1.665282 TTTCTTTACTCGCGCGGCA 60.665 52.632 31.69 11.04 0.00 5.69
39 40 1.225664 GTTTCTTTACTCGCGCGGC 60.226 57.895 31.69 0.00 0.00 6.53
40 41 1.056750 CGTTTCTTTACTCGCGCGG 59.943 57.895 31.69 22.52 0.00 6.46
41 42 0.431984 TTCGTTTCTTTACTCGCGCG 59.568 50.000 26.76 26.76 0.00 6.86
42 43 1.777540 CGTTCGTTTCTTTACTCGCGC 60.778 52.381 0.00 0.00 0.00 6.86
43 44 1.777540 GCGTTCGTTTCTTTACTCGCG 60.778 52.381 0.00 0.00 33.79 5.87
44 45 1.777540 CGCGTTCGTTTCTTTACTCGC 60.778 52.381 0.00 0.00 39.21 5.03
45 46 1.201629 CCGCGTTCGTTTCTTTACTCG 60.202 52.381 4.92 0.00 0.00 4.18
46 47 1.125566 CCCGCGTTCGTTTCTTTACTC 59.874 52.381 4.92 0.00 0.00 2.59
47 48 1.142474 CCCGCGTTCGTTTCTTTACT 58.858 50.000 4.92 0.00 0.00 2.24
48 49 0.164432 CCCCGCGTTCGTTTCTTTAC 59.836 55.000 4.92 0.00 0.00 2.01
49 50 1.567746 GCCCCGCGTTCGTTTCTTTA 61.568 55.000 4.92 0.00 0.00 1.85
50 51 2.900167 GCCCCGCGTTCGTTTCTTT 61.900 57.895 4.92 0.00 0.00 2.52
51 52 3.351416 GCCCCGCGTTCGTTTCTT 61.351 61.111 4.92 0.00 0.00 2.52
64 65 1.481363 GCTCTAATATACGGAGGCCCC 59.519 57.143 0.00 0.00 0.00 5.80
65 66 2.176889 TGCTCTAATATACGGAGGCCC 58.823 52.381 0.00 0.00 0.00 5.80
66 67 3.195825 ACATGCTCTAATATACGGAGGCC 59.804 47.826 0.00 0.00 0.00 5.19
67 68 4.082190 TGACATGCTCTAATATACGGAGGC 60.082 45.833 0.00 0.00 0.00 4.70
68 69 5.644977 TGACATGCTCTAATATACGGAGG 57.355 43.478 0.00 0.00 0.00 4.30
69 70 7.433719 GCTAATGACATGCTCTAATATACGGAG 59.566 40.741 0.00 0.00 0.00 4.63
70 71 7.258441 GCTAATGACATGCTCTAATATACGGA 58.742 38.462 0.00 0.00 0.00 4.69
71 72 6.197282 CGCTAATGACATGCTCTAATATACGG 59.803 42.308 0.00 0.00 0.00 4.02
72 73 6.291322 GCGCTAATGACATGCTCTAATATACG 60.291 42.308 0.00 0.00 0.00 3.06
73 74 6.019479 GGCGCTAATGACATGCTCTAATATAC 60.019 42.308 7.64 0.00 0.00 1.47
74 75 6.042777 GGCGCTAATGACATGCTCTAATATA 58.957 40.000 7.64 0.00 0.00 0.86
75 76 4.872691 GGCGCTAATGACATGCTCTAATAT 59.127 41.667 7.64 0.00 0.00 1.28
76 77 4.021104 AGGCGCTAATGACATGCTCTAATA 60.021 41.667 7.64 0.00 0.00 0.98
77 78 3.070018 GGCGCTAATGACATGCTCTAAT 58.930 45.455 7.64 0.00 0.00 1.73
78 79 2.103094 AGGCGCTAATGACATGCTCTAA 59.897 45.455 7.64 0.00 0.00 2.10
79 80 1.688735 AGGCGCTAATGACATGCTCTA 59.311 47.619 7.64 0.00 0.00 2.43
80 81 0.467384 AGGCGCTAATGACATGCTCT 59.533 50.000 7.64 0.00 0.00 4.09
81 82 1.003116 CAAGGCGCTAATGACATGCTC 60.003 52.381 7.64 0.00 0.00 4.26
82 83 1.019673 CAAGGCGCTAATGACATGCT 58.980 50.000 7.64 0.00 0.00 3.79
83 84 0.593263 GCAAGGCGCTAATGACATGC 60.593 55.000 7.64 0.00 37.77 4.06
84 85 3.539253 GCAAGGCGCTAATGACATG 57.461 52.632 7.64 0.00 37.77 3.21
96 97 1.401905 CTTTATCCTCCAACGCAAGGC 59.598 52.381 0.00 0.00 46.39 4.35
97 98 1.401905 GCTTTATCCTCCAACGCAAGG 59.598 52.381 0.00 0.00 46.39 3.61
98 99 4.783461 GGAGCTTTATCCTCCAACGCAAG 61.783 52.174 2.70 0.00 46.51 4.01
99 100 2.356135 GAGCTTTATCCTCCAACGCAA 58.644 47.619 0.00 0.00 0.00 4.85
100 101 1.406887 GGAGCTTTATCCTCCAACGCA 60.407 52.381 2.70 0.00 46.51 5.24
101 102 1.300481 GGAGCTTTATCCTCCAACGC 58.700 55.000 2.70 0.00 46.51 4.84
116 117 6.805760 CAGAAAATTGAAAAAGAGCTAGGAGC 59.194 38.462 0.00 0.00 42.84 4.70
117 118 6.805760 GCAGAAAATTGAAAAAGAGCTAGGAG 59.194 38.462 0.00 0.00 0.00 3.69
118 119 6.491403 AGCAGAAAATTGAAAAAGAGCTAGGA 59.509 34.615 0.00 0.00 0.00 2.94
119 120 6.685657 AGCAGAAAATTGAAAAAGAGCTAGG 58.314 36.000 0.00 0.00 0.00 3.02
120 121 9.852091 AATAGCAGAAAATTGAAAAAGAGCTAG 57.148 29.630 0.00 0.00 34.78 3.42
150 151 0.535553 AGGGCGCTTACGGTGAAAAA 60.536 50.000 7.64 0.00 40.57 1.94
151 152 1.071814 AGGGCGCTTACGGTGAAAA 59.928 52.632 7.64 0.00 40.57 2.29
152 153 1.669760 CAGGGCGCTTACGGTGAAA 60.670 57.895 7.64 0.00 40.57 2.69
153 154 2.047655 CAGGGCGCTTACGGTGAA 60.048 61.111 7.64 0.00 40.57 3.18
154 155 4.752879 GCAGGGCGCTTACGGTGA 62.753 66.667 7.64 0.00 40.57 4.02
165 166 0.102663 GGTAGACTCTTACGCAGGGC 59.897 60.000 0.00 0.00 0.00 5.19
166 167 1.471119 TGGTAGACTCTTACGCAGGG 58.529 55.000 0.00 0.00 0.00 4.45
167 168 3.119101 ACAATGGTAGACTCTTACGCAGG 60.119 47.826 0.00 0.00 0.00 4.85
168 169 4.111375 ACAATGGTAGACTCTTACGCAG 57.889 45.455 0.00 0.00 0.00 5.18
180 181 4.630644 ATCAGGGCATCTACAATGGTAG 57.369 45.455 0.20 0.20 46.85 3.18
181 182 5.155161 AGTATCAGGGCATCTACAATGGTA 58.845 41.667 0.00 0.00 0.00 3.25
182 183 3.976654 AGTATCAGGGCATCTACAATGGT 59.023 43.478 0.00 0.00 0.00 3.55
183 184 4.285517 AGAGTATCAGGGCATCTACAATGG 59.714 45.833 0.00 0.00 37.82 3.16
184 185 5.477510 GAGAGTATCAGGGCATCTACAATG 58.522 45.833 0.00 0.00 37.82 2.82
185 186 4.530161 GGAGAGTATCAGGGCATCTACAAT 59.470 45.833 0.00 0.00 37.82 2.71
186 187 3.898123 GGAGAGTATCAGGGCATCTACAA 59.102 47.826 0.00 0.00 37.82 2.41
187 188 3.501349 GGAGAGTATCAGGGCATCTACA 58.499 50.000 0.00 0.00 37.82 2.74
188 189 2.829120 GGGAGAGTATCAGGGCATCTAC 59.171 54.545 0.00 0.00 37.82 2.59
189 190 2.225394 GGGGAGAGTATCAGGGCATCTA 60.225 54.545 0.00 0.00 37.82 1.98
190 191 1.484065 GGGGAGAGTATCAGGGCATCT 60.484 57.143 0.00 0.00 37.82 2.90
191 192 0.980423 GGGGAGAGTATCAGGGCATC 59.020 60.000 0.00 0.00 37.82 3.91
192 193 0.474660 GGGGGAGAGTATCAGGGCAT 60.475 60.000 0.00 0.00 37.82 4.40
193 194 1.074471 GGGGGAGAGTATCAGGGCA 60.074 63.158 0.00 0.00 37.82 5.36
194 195 3.893324 GGGGGAGAGTATCAGGGC 58.107 66.667 0.00 0.00 37.82 5.19
289 327 2.169789 AGATCACAGCGTCGCATGC 61.170 57.895 21.09 7.91 0.00 4.06
360 398 3.307059 CCTGCTGCTATGAATACCCTACC 60.307 52.174 0.00 0.00 0.00 3.18
361 399 3.578716 TCCTGCTGCTATGAATACCCTAC 59.421 47.826 0.00 0.00 0.00 3.18
362 400 3.856900 TCCTGCTGCTATGAATACCCTA 58.143 45.455 0.00 0.00 0.00 3.53
363 401 2.694397 TCCTGCTGCTATGAATACCCT 58.306 47.619 0.00 0.00 0.00 4.34
364 402 3.710209 ATCCTGCTGCTATGAATACCC 57.290 47.619 0.00 0.00 0.00 3.69
753 794 1.297689 GGGTCGGTAGGTTGGTTCC 59.702 63.158 0.00 0.00 0.00 3.62
984 1031 3.851184 ATCCCCTCCCTCCCTCCG 61.851 72.222 0.00 0.00 0.00 4.63
1128 1184 2.583143 AGACGGGGGAAGAAAACAAAG 58.417 47.619 0.00 0.00 0.00 2.77
1136 1193 1.681327 CGGAGAAGACGGGGGAAGA 60.681 63.158 0.00 0.00 0.00 2.87
1139 1196 0.251742 TAAACGGAGAAGACGGGGGA 60.252 55.000 0.00 0.00 35.23 4.81
1187 1245 1.000521 CAGCCCAATTGCTCCTCCA 60.001 57.895 0.00 0.00 40.32 3.86
1195 1253 1.294138 CAAGCCACCAGCCCAATTG 59.706 57.895 0.00 0.00 45.47 2.32
1223 1286 1.409521 CGGCAATTAATCCACCTCCCA 60.410 52.381 0.00 0.00 0.00 4.37
1497 1561 3.053455 GGTAGCAATCGAAGATTCCTCG 58.947 50.000 0.00 0.00 45.12 4.63
1578 1642 4.159506 CCCAAACCACACAAATATACAGGG 59.840 45.833 0.00 0.00 0.00 4.45
1579 1643 4.381505 GCCCAAACCACACAAATATACAGG 60.382 45.833 0.00 0.00 0.00 4.00
1580 1644 4.219507 TGCCCAAACCACACAAATATACAG 59.780 41.667 0.00 0.00 0.00 2.74
1674 1738 5.314923 TGCAAACAGAAAGATATGCCTTC 57.685 39.130 0.00 0.00 33.01 3.46
1722 1786 5.893897 AAAGCACAATCTGATTCCTTCTC 57.106 39.130 0.00 0.00 0.00 2.87
1964 2028 5.833131 GCTCTTCCACCCAAATCCATAATAA 59.167 40.000 0.00 0.00 0.00 1.40
1965 2029 5.103728 TGCTCTTCCACCCAAATCCATAATA 60.104 40.000 0.00 0.00 0.00 0.98
1966 2030 4.218312 GCTCTTCCACCCAAATCCATAAT 58.782 43.478 0.00 0.00 0.00 1.28
2077 2141 2.480419 ACAATACTCTTGCTTGCGTGTC 59.520 45.455 0.00 0.00 0.00 3.67
2116 2192 1.203100 AGGAAAGTGGGCAGCTGATTT 60.203 47.619 20.43 9.28 0.00 2.17
2117 2193 0.407139 AGGAAAGTGGGCAGCTGATT 59.593 50.000 20.43 1.36 0.00 2.57
2118 2194 0.407139 AAGGAAAGTGGGCAGCTGAT 59.593 50.000 20.43 0.00 0.00 2.90
2119 2195 1.064003 TAAGGAAAGTGGGCAGCTGA 58.936 50.000 20.43 0.00 0.00 4.26
2120 2196 1.815003 CTTAAGGAAAGTGGGCAGCTG 59.185 52.381 10.11 10.11 0.00 4.24
2121 2197 1.888391 GCTTAAGGAAAGTGGGCAGCT 60.888 52.381 4.29 0.00 37.53 4.24
2122 2198 0.528017 GCTTAAGGAAAGTGGGCAGC 59.472 55.000 4.29 0.00 37.53 5.25
2123 2199 1.541588 GTGCTTAAGGAAAGTGGGCAG 59.458 52.381 4.29 0.00 37.53 4.85
2124 2200 1.133637 TGTGCTTAAGGAAAGTGGGCA 60.134 47.619 4.29 0.00 37.53 5.36
2125 2201 1.616159 TGTGCTTAAGGAAAGTGGGC 58.384 50.000 4.29 0.00 37.53 5.36
2126 2202 4.280677 TCATTTGTGCTTAAGGAAAGTGGG 59.719 41.667 4.29 0.00 37.53 4.61
2127 2203 5.010012 AGTCATTTGTGCTTAAGGAAAGTGG 59.990 40.000 4.29 0.00 37.53 4.00
2199 2275 3.843510 GCAGAACGTTAACAGTGAAACCG 60.844 47.826 0.00 0.00 37.80 4.44
2215 2291 4.509600 GGCTCATACATAAGACTGCAGAAC 59.490 45.833 23.35 13.87 0.00 3.01
2410 2486 7.736447 ACATCGATAACTTAAAGGTTCGAAAC 58.264 34.615 4.63 4.63 32.29 2.78
2412 2488 7.274904 CAGACATCGATAACTTAAAGGTTCGAA 59.725 37.037 0.00 0.00 32.29 3.71
2414 2490 6.530534 ACAGACATCGATAACTTAAAGGTTCG 59.469 38.462 0.00 0.00 0.00 3.95
2462 2538 3.524789 TGATGACTGATCCAGAAATGGGT 59.475 43.478 0.45 0.00 35.18 4.51
2488 2564 1.551430 TGATTTGGGCCTTGAATGCAG 59.449 47.619 4.53 0.00 0.00 4.41
2556 2632 4.762289 ACTCACCTTTCCATCATACTCC 57.238 45.455 0.00 0.00 0.00 3.85
2599 2675 4.634443 ACAGAAACCAGATACGGTAAATGC 59.366 41.667 0.00 0.00 38.76 3.56
2667 2744 4.963276 TGCACATACAATGCCTAGAAAC 57.037 40.909 0.00 0.00 42.69 2.78
2753 2854 5.278758 GCCCAAATACTTGTAACTTTCAGCA 60.279 40.000 0.00 0.00 0.00 4.41
2754 2855 5.161358 GCCCAAATACTTGTAACTTTCAGC 58.839 41.667 0.00 0.00 0.00 4.26
2761 2862 4.561213 GCGAAATGCCCAAATACTTGTAAC 59.439 41.667 0.00 0.00 37.76 2.50
2798 2899 0.736636 GGCACCGGCTATTTAACCAC 59.263 55.000 0.00 0.00 40.87 4.16
2810 2911 1.821216 AAATAGTGTCAAGGCACCGG 58.179 50.000 0.00 0.00 40.04 5.28
2895 2996 5.420104 CAGACTTTTGATTAATTGAGGGGCT 59.580 40.000 0.00 0.00 0.00 5.19
2918 3020 0.605319 GAGTGCCCGTCATTCAACCA 60.605 55.000 0.00 0.00 32.32 3.67
2951 3053 0.540365 TGCAAGCTTTTGGGAGGGAG 60.540 55.000 0.00 0.00 0.00 4.30
2953 3055 0.978907 AATGCAAGCTTTTGGGAGGG 59.021 50.000 0.00 0.00 0.00 4.30
2957 3059 3.891422 TGGATAATGCAAGCTTTTGGG 57.109 42.857 0.00 0.00 0.00 4.12
2976 3078 7.181569 TCCTAAAATATTTCCCCTGCTTTTG 57.818 36.000 0.10 0.00 0.00 2.44
3392 3555 1.935933 CCGCGCTGGACTTACTATTT 58.064 50.000 12.11 0.00 42.00 1.40
3395 3558 2.493030 GCCGCGCTGGACTTACTA 59.507 61.111 20.06 0.00 42.00 1.82
3420 3583 4.774200 AGTAGGCTGCAGAAAATTTTCCAT 59.226 37.500 24.01 10.88 37.92 3.41
3424 3587 5.305386 AGGAAAGTAGGCTGCAGAAAATTTT 59.695 36.000 20.43 11.45 0.00 1.82
3487 3650 5.869888 ACCATGCTCTAAAAGTTAGACTTCG 59.130 40.000 0.00 0.00 37.47 3.79
3497 3660 4.274459 GGTGCATCTACCATGCTCTAAAAG 59.726 45.833 8.00 0.00 44.79 2.27
3513 3676 4.342378 TGGTTCTGTAGATCTAGGTGCATC 59.658 45.833 1.64 0.00 0.00 3.91
3537 3700 8.382405 ACATCCTTGCATATATGTTGTATGGTA 58.618 33.333 14.14 3.00 31.68 3.25
3538 3701 7.233632 ACATCCTTGCATATATGTTGTATGGT 58.766 34.615 14.14 3.76 31.68 3.55
3539 3702 7.609146 AGACATCCTTGCATATATGTTGTATGG 59.391 37.037 14.14 9.65 32.87 2.74
3541 3704 9.006839 CAAGACATCCTTGCATATATGTTGTAT 57.993 33.333 14.14 4.20 44.90 2.29
3542 3705 8.382030 CAAGACATCCTTGCATATATGTTGTA 57.618 34.615 14.14 0.00 44.90 2.41
3566 3729 4.698201 TCCTACAATGTGAACTGGAACA 57.302 40.909 0.00 0.00 0.00 3.18
3567 3730 6.016276 ACATTTCCTACAATGTGAACTGGAAC 60.016 38.462 0.00 0.00 44.19 3.62
3617 3784 7.408756 ACTGAATAATATGCCAACACAATGT 57.591 32.000 0.00 0.00 0.00 2.71
3624 3791 6.639632 ATGTGGACTGAATAATATGCCAAC 57.360 37.500 0.00 0.00 0.00 3.77
3634 3801 5.159273 TGTGCTACAATGTGGACTGAATA 57.841 39.130 0.00 0.00 0.00 1.75
3635 3802 4.019792 TGTGCTACAATGTGGACTGAAT 57.980 40.909 0.00 0.00 0.00 2.57
3637 3804 3.244526 ACATGTGCTACAATGTGGACTGA 60.245 43.478 0.00 0.00 0.00 3.41
3639 3806 3.076621 CACATGTGCTACAATGTGGACT 58.923 45.455 13.94 0.00 35.72 3.85
3640 3807 2.813754 ACACATGTGCTACAATGTGGAC 59.186 45.455 25.68 0.97 39.57 4.02
3641 3808 3.138884 ACACATGTGCTACAATGTGGA 57.861 42.857 25.68 0.00 39.57 4.02
3643 3810 4.023792 ACTGAACACATGTGCTACAATGTG 60.024 41.667 25.68 12.86 40.30 3.21
3644 3811 4.136796 ACTGAACACATGTGCTACAATGT 58.863 39.130 25.68 13.97 34.28 2.71
3645 3812 4.754372 ACTGAACACATGTGCTACAATG 57.246 40.909 25.68 13.42 0.00 2.82
3646 3813 4.821260 TGAACTGAACACATGTGCTACAAT 59.179 37.500 25.68 10.30 0.00 2.71
3647 3814 4.195416 TGAACTGAACACATGTGCTACAA 58.805 39.130 25.68 6.45 0.00 2.41
3648 3815 3.802866 TGAACTGAACACATGTGCTACA 58.197 40.909 25.68 19.71 0.00 2.74
3649 3816 3.809832 ACTGAACTGAACACATGTGCTAC 59.190 43.478 25.68 16.43 0.00 3.58
3650 3817 4.071961 ACTGAACTGAACACATGTGCTA 57.928 40.909 25.68 11.02 0.00 3.49
3652 3819 3.698029 AACTGAACTGAACACATGTGC 57.302 42.857 25.68 11.00 0.00 4.57
3653 3820 7.306167 GCAAAATAACTGAACTGAACACATGTG 60.306 37.037 24.25 24.25 0.00 3.21
3654 3821 6.697019 GCAAAATAACTGAACTGAACACATGT 59.303 34.615 0.00 0.00 0.00 3.21
3655 3822 6.919662 AGCAAAATAACTGAACTGAACACATG 59.080 34.615 0.00 0.00 0.00 3.21
3656 3823 7.042797 AGCAAAATAACTGAACTGAACACAT 57.957 32.000 0.00 0.00 0.00 3.21
3657 3824 6.449635 AGCAAAATAACTGAACTGAACACA 57.550 33.333 0.00 0.00 0.00 3.72
3659 3826 9.862371 TTTAAAGCAAAATAACTGAACTGAACA 57.138 25.926 0.00 0.00 0.00 3.18
3661 3828 9.862371 TGTTTAAAGCAAAATAACTGAACTGAA 57.138 25.926 0.00 0.00 0.00 3.02
3665 3832 9.862585 CCAATGTTTAAAGCAAAATAACTGAAC 57.137 29.630 0.00 0.00 0.00 3.18
3685 4085 9.574516 AAGAAGTTGAGTAAGAAATACCAATGT 57.425 29.630 0.00 0.00 34.89 2.71
3718 4118 9.107177 GCATAGCTCATCTAACATAAGCATATT 57.893 33.333 0.00 0.00 35.42 1.28
3722 4122 5.930569 CAGCATAGCTCATCTAACATAAGCA 59.069 40.000 0.00 0.00 36.40 3.91
3724 4124 7.328982 CAGTCAGCATAGCTCATCTAACATAAG 59.671 40.741 0.00 0.00 36.40 1.73
3726 4126 6.266330 ACAGTCAGCATAGCTCATCTAACATA 59.734 38.462 0.00 0.00 36.40 2.29
3727 4127 5.070180 ACAGTCAGCATAGCTCATCTAACAT 59.930 40.000 0.00 0.00 36.40 2.71
3729 4129 4.744137 CACAGTCAGCATAGCTCATCTAAC 59.256 45.833 0.00 0.00 36.40 2.34
3732 4132 2.483363 GCACAGTCAGCATAGCTCATCT 60.483 50.000 0.00 0.00 36.40 2.90
3733 4133 1.865970 GCACAGTCAGCATAGCTCATC 59.134 52.381 0.00 0.00 36.40 2.92
3734 4134 1.485480 AGCACAGTCAGCATAGCTCAT 59.515 47.619 0.00 0.00 36.40 2.90
3735 4135 0.900421 AGCACAGTCAGCATAGCTCA 59.100 50.000 0.00 0.00 36.40 4.26
3736 4136 1.932511 GAAGCACAGTCAGCATAGCTC 59.067 52.381 0.00 0.00 36.40 4.09
3737 4137 1.277273 TGAAGCACAGTCAGCATAGCT 59.723 47.619 0.00 0.00 40.77 3.32
3738 4138 1.396301 GTGAAGCACAGTCAGCATAGC 59.604 52.381 0.00 0.00 34.08 2.97
3739 4139 2.691927 TGTGAAGCACAGTCAGCATAG 58.308 47.619 0.00 0.00 39.62 2.23
3740 4140 2.837532 TGTGAAGCACAGTCAGCATA 57.162 45.000 0.00 0.00 39.62 3.14
3741 4141 3.711937 TGTGAAGCACAGTCAGCAT 57.288 47.368 0.00 0.00 39.62 3.79
3748 4148 9.140052 CAGCATGAAAGAAAATGTGAAGCACAG 62.140 40.741 6.41 0.00 43.61 3.66
3750 4150 4.986659 AGCATGAAAGAAAATGTGAAGCAC 59.013 37.500 0.00 0.00 34.56 4.40
3751 4151 4.986034 CAGCATGAAAGAAAATGTGAAGCA 59.014 37.500 0.00 0.00 39.69 3.91
3752 4152 4.143179 GCAGCATGAAAGAAAATGTGAAGC 60.143 41.667 0.00 0.00 39.69 3.86
3753 4153 5.118664 CAGCAGCATGAAAGAAAATGTGAAG 59.881 40.000 0.00 0.00 39.69 3.02
3754 4154 4.986034 CAGCAGCATGAAAGAAAATGTGAA 59.014 37.500 0.00 0.00 39.69 3.18
3756 4156 4.304110 ACAGCAGCATGAAAGAAAATGTG 58.696 39.130 0.00 0.00 39.69 3.21
3757 4157 4.595762 ACAGCAGCATGAAAGAAAATGT 57.404 36.364 0.00 0.00 39.69 2.71
3758 4158 5.571741 CAGTACAGCAGCATGAAAGAAAATG 59.428 40.000 0.00 0.00 39.69 2.32
3759 4159 5.336213 CCAGTACAGCAGCATGAAAGAAAAT 60.336 40.000 0.00 0.00 39.69 1.82
3760 4160 4.022935 CCAGTACAGCAGCATGAAAGAAAA 60.023 41.667 0.00 0.00 39.69 2.29
3761 4161 3.503363 CCAGTACAGCAGCATGAAAGAAA 59.497 43.478 0.00 0.00 39.69 2.52
3764 4164 1.131883 GCCAGTACAGCAGCATGAAAG 59.868 52.381 0.00 0.00 39.69 2.62
3765 4165 1.167851 GCCAGTACAGCAGCATGAAA 58.832 50.000 0.00 0.00 39.69 2.69
3767 4167 0.253894 ATGCCAGTACAGCAGCATGA 59.746 50.000 14.81 0.00 43.99 3.07
3768 4168 2.789842 ATGCCAGTACAGCAGCATG 58.210 52.632 14.81 0.00 43.99 4.06
3769 4169 0.253894 TCATGCCAGTACAGCAGCAT 59.746 50.000 14.81 10.44 46.50 3.79
3771 4171 1.386533 ATTCATGCCAGTACAGCAGC 58.613 50.000 14.81 3.59 44.90 5.25
3773 4173 6.356556 ACTAATAATTCATGCCAGTACAGCA 58.643 36.000 12.34 12.34 45.94 4.41
3774 4174 6.867662 ACTAATAATTCATGCCAGTACAGC 57.132 37.500 0.00 0.00 0.00 4.40
3775 4175 8.446273 GCATACTAATAATTCATGCCAGTACAG 58.554 37.037 0.00 0.00 36.78 2.74
3776 4176 8.156820 AGCATACTAATAATTCATGCCAGTACA 58.843 33.333 0.00 0.00 42.30 2.90
3777 4177 8.553459 AGCATACTAATAATTCATGCCAGTAC 57.447 34.615 0.00 0.00 42.30 2.73
3778 4178 9.875691 CTAGCATACTAATAATTCATGCCAGTA 57.124 33.333 0.00 0.00 42.30 2.74
3779 4179 7.335422 GCTAGCATACTAATAATTCATGCCAGT 59.665 37.037 10.63 0.00 42.30 4.00
3780 4180 7.335171 TGCTAGCATACTAATAATTCATGCCAG 59.665 37.037 14.93 0.00 42.30 4.85
3781 4181 7.119699 GTGCTAGCATACTAATAATTCATGCCA 59.880 37.037 22.51 0.00 42.30 4.92
3782 4182 7.119699 TGTGCTAGCATACTAATAATTCATGCC 59.880 37.037 22.51 1.39 42.30 4.40
3783 4183 7.959651 GTGTGCTAGCATACTAATAATTCATGC 59.040 37.037 30.68 9.69 41.78 4.06
3784 4184 9.212641 AGTGTGCTAGCATACTAATAATTCATG 57.787 33.333 36.81 0.00 44.55 3.07
3785 4185 9.212641 CAGTGTGCTAGCATACTAATAATTCAT 57.787 33.333 36.94 16.05 44.57 2.57
3786 4186 8.421002 TCAGTGTGCTAGCATACTAATAATTCA 58.579 33.333 36.94 17.34 44.57 2.57
3787 4187 8.818141 TCAGTGTGCTAGCATACTAATAATTC 57.182 34.615 36.94 15.11 44.57 2.17
3788 4188 9.613428 TTTCAGTGTGCTAGCATACTAATAATT 57.387 29.630 36.94 17.98 44.57 1.40
3789 4189 9.046296 GTTTCAGTGTGCTAGCATACTAATAAT 57.954 33.333 36.94 18.62 44.57 1.28
3790 4190 8.258007 AGTTTCAGTGTGCTAGCATACTAATAA 58.742 33.333 36.94 28.38 44.57 1.40
3791 4191 7.782049 AGTTTCAGTGTGCTAGCATACTAATA 58.218 34.615 36.94 25.37 44.57 0.98
3792 4192 6.644347 AGTTTCAGTGTGCTAGCATACTAAT 58.356 36.000 36.94 23.25 44.57 1.73
3793 4193 6.037786 AGTTTCAGTGTGCTAGCATACTAA 57.962 37.500 36.94 28.08 44.57 2.24
3794 4194 5.661056 AGTTTCAGTGTGCTAGCATACTA 57.339 39.130 36.94 24.74 44.57 1.82
3818 4225 7.877612 CCTAAAGGTTCCTTGCATTGTTAAAAT 59.122 33.333 4.77 0.00 0.00 1.82
3819 4226 7.213678 CCTAAAGGTTCCTTGCATTGTTAAAA 58.786 34.615 4.77 0.00 0.00 1.52
3820 4227 6.740122 GCCTAAAGGTTCCTTGCATTGTTAAA 60.740 38.462 4.77 0.00 37.57 1.52
3822 4229 4.219725 GCCTAAAGGTTCCTTGCATTGTTA 59.780 41.667 4.77 0.00 37.57 2.41
3824 4231 2.562738 GCCTAAAGGTTCCTTGCATTGT 59.437 45.455 4.77 0.00 37.57 2.71
3825 4232 2.827921 AGCCTAAAGGTTCCTTGCATTG 59.172 45.455 4.77 0.00 37.57 2.82
3826 4233 3.175438 AGCCTAAAGGTTCCTTGCATT 57.825 42.857 4.77 0.00 37.57 3.56
3828 4235 3.799432 TTAGCCTAAAGGTTCCTTGCA 57.201 42.857 4.77 0.00 37.57 4.08
3830 4237 8.753497 ATTCTATTTAGCCTAAAGGTTCCTTG 57.247 34.615 4.77 0.00 37.57 3.61
3833 4240 9.274206 CACTATTCTATTTAGCCTAAAGGTTCC 57.726 37.037 2.98 0.00 37.57 3.62
3851 4258 6.092955 TCCGTTCTGTTGTTACACTATTCT 57.907 37.500 0.00 0.00 0.00 2.40
3857 4264 3.545426 GCAGTTCCGTTCTGTTGTTACAC 60.545 47.826 0.00 0.00 35.60 2.90
3860 4267 2.610374 GTGCAGTTCCGTTCTGTTGTTA 59.390 45.455 0.00 0.00 35.60 2.41
3872 4279 3.068024 TCACTTTCATTTGGTGCAGTTCC 59.932 43.478 0.00 0.00 0.00 3.62
3876 4283 4.873817 TGAATCACTTTCATTTGGTGCAG 58.126 39.130 0.00 0.00 39.44 4.41
3878 4285 3.676646 GCTGAATCACTTTCATTTGGTGC 59.323 43.478 0.00 0.00 43.30 5.01
3881 4288 6.160684 TGATTGCTGAATCACTTTCATTTGG 58.839 36.000 0.00 0.00 42.56 3.28
3882 4289 7.621426 GCTTGATTGCTGAATCACTTTCATTTG 60.621 37.037 0.00 0.00 46.23 2.32
3884 4291 5.867716 GCTTGATTGCTGAATCACTTTCATT 59.132 36.000 0.00 0.00 46.23 2.57
3885 4292 5.047590 TGCTTGATTGCTGAATCACTTTCAT 60.048 36.000 0.00 0.00 46.23 2.57
3886 4293 4.278919 TGCTTGATTGCTGAATCACTTTCA 59.721 37.500 0.00 0.00 46.23 2.69
3887 4294 4.801891 TGCTTGATTGCTGAATCACTTTC 58.198 39.130 0.00 0.00 46.23 2.62
3889 4296 6.152323 ACTTATGCTTGATTGCTGAATCACTT 59.848 34.615 0.00 0.00 46.23 3.16
3890 4297 5.651139 ACTTATGCTTGATTGCTGAATCACT 59.349 36.000 0.00 0.00 46.23 3.41
3891 4298 5.888105 ACTTATGCTTGATTGCTGAATCAC 58.112 37.500 0.00 0.00 46.23 3.06
3892 4299 5.066893 GGACTTATGCTTGATTGCTGAATCA 59.933 40.000 0.00 0.00 45.15 2.57
3893 4300 5.506982 GGGACTTATGCTTGATTGCTGAATC 60.507 44.000 0.00 0.00 38.85 2.52
3895 4302 3.696051 GGGACTTATGCTTGATTGCTGAA 59.304 43.478 0.00 0.00 0.00 3.02
3897 4304 3.018856 TGGGACTTATGCTTGATTGCTG 58.981 45.455 0.00 0.00 0.00 4.41
3898 4305 3.370840 TGGGACTTATGCTTGATTGCT 57.629 42.857 0.00 0.00 0.00 3.91
3899 4306 3.633525 TGATGGGACTTATGCTTGATTGC 59.366 43.478 0.00 0.00 0.00 3.56
3900 4307 4.277672 CCTGATGGGACTTATGCTTGATTG 59.722 45.833 0.00 0.00 37.23 2.67
3901 4308 4.166725 TCCTGATGGGACTTATGCTTGATT 59.833 41.667 0.00 0.00 39.58 2.57
3902 4309 3.718434 TCCTGATGGGACTTATGCTTGAT 59.282 43.478 0.00 0.00 39.58 2.57
3903 4310 3.114606 TCCTGATGGGACTTATGCTTGA 58.885 45.455 0.00 0.00 39.58 3.02
3904 4311 3.565764 TCCTGATGGGACTTATGCTTG 57.434 47.619 0.00 0.00 39.58 4.01
3915 4322 4.518211 GTCAAGATAAAGCATCCTGATGGG 59.482 45.833 9.07 0.00 36.67 4.00
3916 4323 5.008415 GTGTCAAGATAAAGCATCCTGATGG 59.992 44.000 9.07 0.00 36.67 3.51
3920 4327 4.201891 GCAGTGTCAAGATAAAGCATCCTG 60.202 45.833 0.00 0.00 33.75 3.86
3971 4378 6.479884 AGGATGCTAAACTTCAGATTCAGTT 58.520 36.000 0.00 0.00 34.58 3.16
4059 4468 2.029290 AGCTAATACCATTAGGACGGCG 60.029 50.000 4.80 4.80 38.69 6.46
4061 4470 5.979288 ACTAGCTAATACCATTAGGACGG 57.021 43.478 7.77 0.00 38.69 4.79
4103 4518 8.539770 TCAATTGCTGCTAATTAGTATAGCTC 57.460 34.615 25.04 7.98 44.79 4.09
4126 4543 6.172630 TCTGCAAGCTACATTAACAAGATCA 58.827 36.000 0.00 0.00 0.00 2.92
4223 4640 6.260936 CCTGAATGGTCTTGCGTATATTCTTT 59.739 38.462 0.00 0.00 0.00 2.52
4293 4710 6.012658 TGATGTGCAAAAGGAAATACAGTC 57.987 37.500 0.00 0.00 0.00 3.51
4313 4730 4.154942 GGCCATAATGAGGGTCATTTGAT 58.845 43.478 7.43 0.00 44.03 2.57
4337 4754 6.870965 GGACATTATTCGCTGTAGATGAAGAT 59.129 38.462 0.00 0.00 0.00 2.40
4463 4880 4.026356 AGAAGCAGGCAAAAGATACAGT 57.974 40.909 0.00 0.00 0.00 3.55
4479 4896 5.241728 ACATGGTGACTTCCTAAAAAGAAGC 59.758 40.000 0.00 0.00 43.75 3.86
4548 4965 1.069823 CCCTCATCGTGATTCTCTGGG 59.930 57.143 0.00 0.00 0.00 4.45
4654 5071 0.667993 CTGAAAAAGAAGGCACGGCA 59.332 50.000 0.00 0.00 0.00 5.69
4669 5086 4.148079 TCTCTTCTGAAGTCTGCTCTGAA 58.852 43.478 16.43 0.00 0.00 3.02
4672 5089 4.343231 TGATCTCTTCTGAAGTCTGCTCT 58.657 43.478 16.43 0.00 0.00 4.09
4702 5119 3.483587 GTCCTTGCCTCCTGGACA 58.516 61.111 6.52 0.00 46.79 4.02
4768 5185 1.003349 TCCTTCTCTTCCTCGTCGTCT 59.997 52.381 0.00 0.00 0.00 4.18
4812 5229 1.062581 CATCCTCCTCTTCCTCCTCCA 60.063 57.143 0.00 0.00 0.00 3.86
4933 5350 0.175073 AAGTTCCACGATAGGCCGAC 59.825 55.000 0.00 0.00 43.77 4.79
5100 5523 3.537580 GTCACGGGGAATACAAGCATAA 58.462 45.455 0.00 0.00 0.00 1.90
5116 5539 0.460311 AGCTATTTCTCCCGGTCACG 59.540 55.000 0.00 0.00 40.55 4.35
5187 5610 2.107950 TTAGGGCGAACCACAGAATG 57.892 50.000 0.00 0.00 43.89 2.67
5267 5715 1.519751 TTACAACGCGCCTGGCATTT 61.520 50.000 20.29 5.01 43.84 2.32
5298 5757 1.072505 CCTTAACACCCACGCTGGT 59.927 57.895 3.82 0.00 39.96 4.00
5341 5800 3.181459 TGCTGTACCAAAAGTAGCACAGA 60.181 43.478 3.84 0.00 35.57 3.41
5345 5804 3.485463 ACTGCTGTACCAAAAGTAGCA 57.515 42.857 0.00 0.00 37.66 3.49
5392 5856 6.937436 CCAACTGGTAGGAATATTTGGTAC 57.063 41.667 0.00 0.00 0.00 3.34
5483 5984 1.909700 ACGTTTGAATCCTGGCATGT 58.090 45.000 0.00 0.00 0.00 3.21
5501 6002 6.129509 CGTTTACTGTCGAGACACTAAAGAAC 60.130 42.308 14.11 8.20 36.21 3.01
5516 6017 2.260481 GGTGCTAGCTCGTTTACTGTC 58.740 52.381 17.23 0.00 0.00 3.51
5522 6023 0.951040 GTGCTGGTGCTAGCTCGTTT 60.951 55.000 17.23 0.00 44.01 3.60
5651 6153 2.455674 TAGCTGTACTTGTGCACAGG 57.544 50.000 25.77 25.77 42.00 4.00
5711 6268 0.944386 AACAGCGTGCATCTTCGTTT 59.056 45.000 0.00 0.00 0.00 3.60
5745 6556 3.084039 TGCAAAGGCTCCTGTAATTCTG 58.916 45.455 0.00 0.00 41.91 3.02
5823 6634 5.874810 GCGGCTAATTACTGAATCCATGATA 59.125 40.000 0.00 0.00 0.00 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.