Multiple sequence alignment - TraesCS3D01G373900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G373900 chr3D 100.000 2870 0 0 1557 4426 487376378 487379247 0.000000e+00 5301.0
1 TraesCS3D01G373900 chr3D 100.000 1142 0 0 1 1142 487374822 487375963 0.000000e+00 2109.0
2 TraesCS3D01G373900 chr3D 86.213 602 50 13 322 898 340746317 340745724 4.860000e-174 621.0
3 TraesCS3D01G373900 chr3D 83.333 168 18 9 3373 3537 587568424 587568584 3.570000e-31 147.0
4 TraesCS3D01G373900 chr3D 82.000 150 13 5 3303 3451 441157882 441157746 1.010000e-21 115.0
5 TraesCS3D01G373900 chr3D 91.111 45 4 0 3244 3288 487378129 487378173 1.330000e-05 62.1
6 TraesCS3D01G373900 chr3D 100.000 29 0 0 294 322 340746359 340746331 2.000000e-03 54.7
7 TraesCS3D01G373900 chr3A 95.133 1993 64 10 1557 3533 631269907 631271882 0.000000e+00 3112.0
8 TraesCS3D01G373900 chr3A 84.615 585 45 16 3799 4357 631277701 631278266 1.400000e-149 540.0
9 TraesCS3D01G373900 chr3A 95.816 239 3 4 907 1142 631269665 631269899 3.230000e-101 379.0
10 TraesCS3D01G373900 chr3A 90.351 228 17 3 3568 3791 631273338 631273564 1.200000e-75 294.0
11 TraesCS3D01G373900 chr3A 94.366 71 4 0 4356 4426 631278302 631278372 4.680000e-20 110.0
12 TraesCS3D01G373900 chr3B 93.657 1214 32 14 1559 2753 650597846 650599033 0.000000e+00 1773.0
13 TraesCS3D01G373900 chr3B 83.840 526 58 13 2810 3333 650599035 650599535 4.010000e-130 475.0
14 TraesCS3D01G373900 chr3B 94.515 237 4 5 907 1142 650597608 650597836 1.510000e-94 357.0
15 TraesCS3D01G373900 chr3B 87.097 186 17 5 3594 3779 650599822 650600000 2.090000e-48 204.0
16 TraesCS3D01G373900 chr3B 90.278 72 6 1 3301 3372 226000832 226000902 4.710000e-15 93.5
17 TraesCS3D01G373900 chr4A 88.641 537 28 7 386 898 733745582 733746109 1.350000e-174 623.0
18 TraesCS3D01G373900 chr4A 83.333 66 8 3 3386 3450 677211865 677211802 1.720000e-04 58.4
19 TraesCS3D01G373900 chr4A 83.333 66 8 3 3386 3450 677233662 677233599 1.720000e-04 58.4
20 TraesCS3D01G373900 chrUn 80.921 152 15 8 3297 3447 41848119 41847981 1.680000e-19 108.0
21 TraesCS3D01G373900 chrUn 80.921 152 15 8 3297 3447 41942129 41942267 1.680000e-19 108.0
22 TraesCS3D01G373900 chrUn 80.921 152 15 8 3297 3447 41949332 41949194 1.680000e-19 108.0
23 TraesCS3D01G373900 chrUn 80.921 152 15 8 3297 3447 322453106 322452968 1.680000e-19 108.0
24 TraesCS3D01G373900 chr2A 93.846 65 3 1 3388 3452 725988704 725988641 3.640000e-16 97.1
25 TraesCS3D01G373900 chr1B 80.000 145 17 5 3305 3449 543479147 543479279 3.640000e-16 97.1
26 TraesCS3D01G373900 chr1A 91.803 61 5 0 3301 3361 33863672 33863732 7.890000e-13 86.1
27 TraesCS3D01G373900 chr1A 97.059 34 1 0 3244 3277 33863679 33863712 1.720000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G373900 chr3D 487374822 487379247 4425 False 2490.700000 5301 97.037000 1 4426 3 chr3D.!!$F2 4425
1 TraesCS3D01G373900 chr3D 340745724 340746359 635 True 337.850000 621 93.106500 294 898 2 chr3D.!!$R2 604
2 TraesCS3D01G373900 chr3A 631269665 631273564 3899 False 1261.666667 3112 93.766667 907 3791 3 chr3A.!!$F1 2884
3 TraesCS3D01G373900 chr3A 631277701 631278372 671 False 325.000000 540 89.490500 3799 4426 2 chr3A.!!$F2 627
4 TraesCS3D01G373900 chr3B 650597608 650600000 2392 False 702.250000 1773 89.777250 907 3779 4 chr3B.!!$F2 2872
5 TraesCS3D01G373900 chr4A 733745582 733746109 527 False 623.000000 623 88.641000 386 898 1 chr4A.!!$F1 512

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
859 899 0.394216 TTCCAATCGGATGGCCACAG 60.394 55.0 8.16 1.78 42.41 3.66 F
1006 1049 0.321122 AAAGGCAGAGTCTCCGCAAG 60.321 55.0 10.20 0.00 0.00 4.01 F
2424 2476 1.103398 GGCCATTTGGGAGTGATCCG 61.103 60.0 0.00 0.00 40.01 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2707 2769 2.485814 GTCTGTTGTTGATCAGAAGCCC 59.514 50.0 0.0 0.0 41.41 5.19 R
2938 3001 2.196742 AAGGCACCCCTATCAGATCA 57.803 50.0 0.0 0.0 41.90 2.92 R
3724 5265 0.174845 TGTTCTATTCTCCGGTGGCG 59.825 55.0 0.0 0.0 0.00 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.923121 TGCTTCACATCCATCTTAGGC 58.077 47.619 0.00 0.00 0.00 3.93
23 24 2.239402 TGCTTCACATCCATCTTAGGCA 59.761 45.455 0.00 0.00 0.00 4.75
24 25 3.117776 TGCTTCACATCCATCTTAGGCAT 60.118 43.478 0.00 0.00 0.00 4.40
25 26 3.252701 GCTTCACATCCATCTTAGGCATG 59.747 47.826 0.00 0.00 0.00 4.06
26 27 3.497103 TCACATCCATCTTAGGCATGG 57.503 47.619 0.00 0.00 42.16 3.66
30 31 2.196742 TCCATCTTAGGCATGGACCT 57.803 50.000 0.39 0.00 44.17 3.85
31 32 2.492025 TCCATCTTAGGCATGGACCTT 58.508 47.619 0.39 0.00 44.17 3.50
32 33 2.173356 TCCATCTTAGGCATGGACCTTG 59.827 50.000 2.95 2.95 44.17 3.61
33 34 2.092212 CCATCTTAGGCATGGACCTTGT 60.092 50.000 9.01 0.00 43.32 3.16
34 35 3.136443 CCATCTTAGGCATGGACCTTGTA 59.864 47.826 9.01 0.00 43.32 2.41
35 36 4.202503 CCATCTTAGGCATGGACCTTGTAT 60.203 45.833 9.01 1.41 43.32 2.29
36 37 4.689612 TCTTAGGCATGGACCTTGTATC 57.310 45.455 9.01 0.63 41.50 2.24
37 38 4.037222 TCTTAGGCATGGACCTTGTATCA 58.963 43.478 9.01 0.00 41.50 2.15
38 39 4.101585 TCTTAGGCATGGACCTTGTATCAG 59.898 45.833 9.01 2.03 41.50 2.90
39 40 2.481441 AGGCATGGACCTTGTATCAGA 58.519 47.619 9.01 0.00 36.28 3.27
40 41 3.051581 AGGCATGGACCTTGTATCAGAT 58.948 45.455 9.01 0.00 36.28 2.90
41 42 3.461085 AGGCATGGACCTTGTATCAGATT 59.539 43.478 9.01 0.00 36.28 2.40
42 43 4.079558 AGGCATGGACCTTGTATCAGATTT 60.080 41.667 9.01 0.00 36.28 2.17
43 44 4.276926 GGCATGGACCTTGTATCAGATTTC 59.723 45.833 9.01 0.00 0.00 2.17
44 45 4.024556 GCATGGACCTTGTATCAGATTTCG 60.025 45.833 9.01 0.00 0.00 3.46
45 46 3.531538 TGGACCTTGTATCAGATTTCGC 58.468 45.455 0.00 0.00 0.00 4.70
46 47 3.197766 TGGACCTTGTATCAGATTTCGCT 59.802 43.478 0.00 0.00 0.00 4.93
47 48 4.404394 TGGACCTTGTATCAGATTTCGCTA 59.596 41.667 0.00 0.00 0.00 4.26
48 49 5.070446 TGGACCTTGTATCAGATTTCGCTAT 59.930 40.000 0.00 0.00 0.00 2.97
49 50 5.992217 GGACCTTGTATCAGATTTCGCTATT 59.008 40.000 0.00 0.00 0.00 1.73
50 51 6.483640 GGACCTTGTATCAGATTTCGCTATTT 59.516 38.462 0.00 0.00 0.00 1.40
51 52 7.012421 GGACCTTGTATCAGATTTCGCTATTTT 59.988 37.037 0.00 0.00 0.00 1.82
52 53 8.281212 ACCTTGTATCAGATTTCGCTATTTTT 57.719 30.769 0.00 0.00 0.00 1.94
82 83 9.632807 TGTTGTATTGTATAAGGATTTTGTTGC 57.367 29.630 0.00 0.00 0.00 4.17
83 84 9.632807 GTTGTATTGTATAAGGATTTTGTTGCA 57.367 29.630 0.00 0.00 0.00 4.08
85 86 9.800433 TGTATTGTATAAGGATTTTGTTGCATG 57.200 29.630 0.00 0.00 0.00 4.06
86 87 9.248291 GTATTGTATAAGGATTTTGTTGCATGG 57.752 33.333 0.00 0.00 0.00 3.66
87 88 7.473735 TTGTATAAGGATTTTGTTGCATGGA 57.526 32.000 0.00 0.00 0.00 3.41
88 89 7.473735 TGTATAAGGATTTTGTTGCATGGAA 57.526 32.000 0.00 0.00 0.00 3.53
89 90 7.546358 TGTATAAGGATTTTGTTGCATGGAAG 58.454 34.615 0.00 0.00 0.00 3.46
90 91 3.323751 AGGATTTTGTTGCATGGAAGC 57.676 42.857 0.00 0.00 0.00 3.86
91 92 2.633967 AGGATTTTGTTGCATGGAAGCA 59.366 40.909 0.00 0.00 43.99 3.91
92 93 3.262405 AGGATTTTGTTGCATGGAAGCAT 59.738 39.130 0.00 0.00 45.19 3.79
93 94 4.467082 AGGATTTTGTTGCATGGAAGCATA 59.533 37.500 0.00 0.00 45.19 3.14
94 95 5.129815 AGGATTTTGTTGCATGGAAGCATAT 59.870 36.000 0.00 0.00 45.19 1.78
95 96 5.464389 GGATTTTGTTGCATGGAAGCATATC 59.536 40.000 0.00 7.83 45.19 1.63
96 97 5.402997 TTTTGTTGCATGGAAGCATATCA 57.597 34.783 0.00 0.00 45.19 2.15
97 98 5.601583 TTTGTTGCATGGAAGCATATCAT 57.398 34.783 0.00 0.00 45.19 2.45
98 99 5.601583 TTGTTGCATGGAAGCATATCATT 57.398 34.783 0.00 0.00 45.19 2.57
99 100 5.601583 TGTTGCATGGAAGCATATCATTT 57.398 34.783 0.00 0.00 45.19 2.32
100 101 5.979993 TGTTGCATGGAAGCATATCATTTT 58.020 33.333 0.00 0.00 45.19 1.82
101 102 6.408035 TGTTGCATGGAAGCATATCATTTTT 58.592 32.000 0.00 0.00 45.19 1.94
102 103 6.535865 TGTTGCATGGAAGCATATCATTTTTC 59.464 34.615 0.00 0.00 45.19 2.29
103 104 5.283294 TGCATGGAAGCATATCATTTTTCG 58.717 37.500 0.00 0.00 40.11 3.46
104 105 4.149396 GCATGGAAGCATATCATTTTTCGC 59.851 41.667 0.00 0.00 0.00 4.70
105 106 5.526115 CATGGAAGCATATCATTTTTCGCT 58.474 37.500 0.00 0.00 0.00 4.93
106 107 4.923893 TGGAAGCATATCATTTTTCGCTG 58.076 39.130 0.00 0.00 0.00 5.18
107 108 4.202040 TGGAAGCATATCATTTTTCGCTGG 60.202 41.667 0.00 0.00 0.00 4.85
108 109 4.036734 GGAAGCATATCATTTTTCGCTGGA 59.963 41.667 0.00 0.00 0.00 3.86
109 110 5.450412 GGAAGCATATCATTTTTCGCTGGAA 60.450 40.000 0.00 0.00 0.00 3.53
110 111 5.179045 AGCATATCATTTTTCGCTGGAAG 57.821 39.130 0.00 0.00 32.80 3.46
129 130 8.290663 CTGGAAGCAAACTTTCTTTTATTGAG 57.709 34.615 0.00 0.00 35.82 3.02
130 131 8.006298 TGGAAGCAAACTTTCTTTTATTGAGA 57.994 30.769 0.00 0.00 35.82 3.27
131 132 8.474025 TGGAAGCAAACTTTCTTTTATTGAGAA 58.526 29.630 0.00 0.00 35.82 2.87
132 133 9.313118 GGAAGCAAACTTTCTTTTATTGAGAAA 57.687 29.630 0.00 0.00 39.95 2.52
177 178 9.921637 ATAGAAGAAAAATTAAATTGCAACGGA 57.078 25.926 0.00 0.00 0.00 4.69
178 179 8.655651 AGAAGAAAAATTAAATTGCAACGGAA 57.344 26.923 0.00 0.00 0.00 4.30
179 180 8.764287 AGAAGAAAAATTAAATTGCAACGGAAG 58.236 29.630 0.00 0.00 0.00 3.46
180 181 6.887368 AGAAAAATTAAATTGCAACGGAAGC 58.113 32.000 0.00 0.00 0.00 3.86
181 182 6.481644 AGAAAAATTAAATTGCAACGGAAGCA 59.518 30.769 0.00 0.00 40.85 3.91
191 192 5.888691 TGCAACGGAAGCAAATATTCTAA 57.111 34.783 0.00 0.00 39.39 2.10
192 193 5.636837 TGCAACGGAAGCAAATATTCTAAC 58.363 37.500 0.00 0.00 39.39 2.34
193 194 5.034797 GCAACGGAAGCAAATATTCTAACC 58.965 41.667 0.00 0.00 0.00 2.85
194 195 5.263185 CAACGGAAGCAAATATTCTAACCG 58.737 41.667 14.91 14.91 42.78 4.44
195 196 4.761975 ACGGAAGCAAATATTCTAACCGA 58.238 39.130 19.54 0.00 40.78 4.69
196 197 4.569564 ACGGAAGCAAATATTCTAACCGAC 59.430 41.667 19.54 0.00 40.78 4.79
197 198 4.317839 CGGAAGCAAATATTCTAACCGACG 60.318 45.833 12.86 0.00 40.16 5.12
198 199 4.569564 GGAAGCAAATATTCTAACCGACGT 59.430 41.667 0.00 0.00 0.00 4.34
199 200 5.464965 AAGCAAATATTCTAACCGACGTG 57.535 39.130 0.00 0.00 0.00 4.49
200 201 4.751060 AGCAAATATTCTAACCGACGTGA 58.249 39.130 0.00 0.00 0.00 4.35
201 202 5.172934 AGCAAATATTCTAACCGACGTGAA 58.827 37.500 0.00 0.00 0.00 3.18
202 203 5.063060 AGCAAATATTCTAACCGACGTGAAC 59.937 40.000 0.00 0.00 0.00 3.18
203 204 5.163933 GCAAATATTCTAACCGACGTGAACA 60.164 40.000 0.00 0.00 0.00 3.18
204 205 6.619018 GCAAATATTCTAACCGACGTGAACAA 60.619 38.462 0.00 0.00 0.00 2.83
205 206 6.642683 AATATTCTAACCGACGTGAACAAG 57.357 37.500 0.00 0.00 0.00 3.16
206 207 3.713858 TTCTAACCGACGTGAACAAGA 57.286 42.857 0.00 0.00 0.00 3.02
207 208 3.713858 TCTAACCGACGTGAACAAGAA 57.286 42.857 0.00 0.00 0.00 2.52
208 209 3.635331 TCTAACCGACGTGAACAAGAAG 58.365 45.455 0.00 0.00 0.00 2.85
209 210 2.304751 AACCGACGTGAACAAGAAGT 57.695 45.000 0.00 0.00 0.00 3.01
210 211 3.441496 AACCGACGTGAACAAGAAGTA 57.559 42.857 0.00 0.00 0.00 2.24
211 212 3.441496 ACCGACGTGAACAAGAAGTAA 57.559 42.857 0.00 0.00 0.00 2.24
212 213 3.784338 ACCGACGTGAACAAGAAGTAAA 58.216 40.909 0.00 0.00 0.00 2.01
213 214 4.183101 ACCGACGTGAACAAGAAGTAAAA 58.817 39.130 0.00 0.00 0.00 1.52
214 215 4.812626 ACCGACGTGAACAAGAAGTAAAAT 59.187 37.500 0.00 0.00 0.00 1.82
215 216 5.984926 ACCGACGTGAACAAGAAGTAAAATA 59.015 36.000 0.00 0.00 0.00 1.40
216 217 6.479660 ACCGACGTGAACAAGAAGTAAAATAA 59.520 34.615 0.00 0.00 0.00 1.40
217 218 7.011295 ACCGACGTGAACAAGAAGTAAAATAAA 59.989 33.333 0.00 0.00 0.00 1.40
218 219 7.319615 CCGACGTGAACAAGAAGTAAAATAAAC 59.680 37.037 0.00 0.00 0.00 2.01
219 220 7.847078 CGACGTGAACAAGAAGTAAAATAAACA 59.153 33.333 0.00 0.00 0.00 2.83
220 221 9.659830 GACGTGAACAAGAAGTAAAATAAACAT 57.340 29.630 0.00 0.00 0.00 2.71
286 287 9.414295 TGATTCTGTTTGAAGCAAATAATTGAG 57.586 29.630 0.00 0.00 46.46 3.02
287 288 9.415544 GATTCTGTTTGAAGCAAATAATTGAGT 57.584 29.630 0.00 0.00 40.49 3.41
288 289 8.801715 TTCTGTTTGAAGCAAATAATTGAGTC 57.198 30.769 0.00 0.00 38.94 3.36
289 290 7.077605 TCTGTTTGAAGCAAATAATTGAGTCG 58.922 34.615 0.00 0.00 38.94 4.18
290 291 6.148948 TGTTTGAAGCAAATAATTGAGTCGG 58.851 36.000 0.00 0.00 38.94 4.79
291 292 5.957842 TTGAAGCAAATAATTGAGTCGGT 57.042 34.783 0.00 0.00 38.94 4.69
292 293 5.295431 TGAAGCAAATAATTGAGTCGGTG 57.705 39.130 0.00 0.00 38.94 4.94
332 347 7.201316 GGTCGCATGAAACATAACAAAATACAC 60.201 37.037 0.00 0.00 0.00 2.90
333 348 6.804295 TCGCATGAAACATAACAAAATACACC 59.196 34.615 0.00 0.00 0.00 4.16
339 354 6.636562 AACATAACAAAATACACCGGACAA 57.363 33.333 9.46 0.00 0.00 3.18
358 373 7.749126 CCGGACAAAACTTCTAACATGAAATAC 59.251 37.037 0.00 0.00 0.00 1.89
382 397 6.475727 ACTCTCGAACAATTGTAATATGACCG 59.524 38.462 12.39 5.99 0.00 4.79
466 481 5.906073 ACAGTCCAAAACAAGAATGGAAAG 58.094 37.500 0.00 0.00 44.41 2.62
479 494 7.706607 ACAAGAATGGAAAGCAAACTAAAGTTC 59.293 33.333 0.00 0.00 37.25 3.01
510 526 7.412853 CAAAGATCCTCACGATTGAAAATAGG 58.587 38.462 0.00 0.00 0.00 2.57
511 527 6.485830 AGATCCTCACGATTGAAAATAGGA 57.514 37.500 0.00 0.00 0.00 2.94
518 534 7.377766 TCACGATTGAAAATAGGAAAGGAAG 57.622 36.000 0.00 0.00 0.00 3.46
604 643 6.149142 AGCAAAGAAAATTTTGTGAAGCAACA 59.851 30.769 8.47 0.00 39.62 3.33
632 671 5.488341 TGTTTAGGAAGCAATAGTCCTCAC 58.512 41.667 0.00 0.00 43.44 3.51
633 672 5.012664 TGTTTAGGAAGCAATAGTCCTCACA 59.987 40.000 0.00 0.00 43.44 3.58
686 725 7.756395 CTGATTAGGAAGCAATGGTATTCAT 57.244 36.000 0.00 0.00 37.79 2.57
742 781 5.650283 TGGATTTGGGGAAGAAGTTGTTAT 58.350 37.500 0.00 0.00 0.00 1.89
743 782 6.795590 TGGATTTGGGGAAGAAGTTGTTATA 58.204 36.000 0.00 0.00 0.00 0.98
814 854 2.031465 TCACGCGGGGGAGTTTTC 59.969 61.111 9.32 0.00 0.00 2.29
859 899 0.394216 TTCCAATCGGATGGCCACAG 60.394 55.000 8.16 1.78 42.41 3.66
1005 1048 0.603707 CAAAGGCAGAGTCTCCGCAA 60.604 55.000 10.20 0.00 0.00 4.85
1006 1049 0.321122 AAAGGCAGAGTCTCCGCAAG 60.321 55.000 10.20 0.00 0.00 4.01
1007 1050 1.476007 AAGGCAGAGTCTCCGCAAGT 61.476 55.000 10.20 0.00 0.00 3.16
1008 1051 1.446966 GGCAGAGTCTCCGCAAGTC 60.447 63.158 10.20 0.00 0.00 3.01
2424 2476 1.103398 GGCCATTTGGGAGTGATCCG 61.103 60.000 0.00 0.00 40.01 4.18
2445 2498 4.397382 CGAGAGCAATGTAACACAACATG 58.603 43.478 0.00 0.00 39.98 3.21
2474 2527 6.108687 GGTGATCTGTATCATGTCTGTTGAA 58.891 40.000 0.00 0.00 43.87 2.69
2490 2543 6.313905 GTCTGTTGAATCGATCTTACATTGGT 59.686 38.462 0.00 0.00 0.00 3.67
2500 2553 6.533723 TCGATCTTACATTGGTTGTGATACAC 59.466 38.462 0.00 0.00 39.48 2.90
2553 2611 7.094377 GGTGAGTTGAAGTTGGAATAATGCTAA 60.094 37.037 0.00 0.00 0.00 3.09
2554 2612 8.296713 GTGAGTTGAAGTTGGAATAATGCTAAA 58.703 33.333 0.00 0.00 0.00 1.85
2707 2769 6.035975 CCAAAGTAAGCACAAGGTTTTCTTTG 59.964 38.462 18.81 18.81 44.18 2.77
2763 2825 6.733145 AGAGCTTCTTCTGACAAAACAATTC 58.267 36.000 0.00 0.00 0.00 2.17
2819 2881 4.767928 ACTGTACACTCTAGAAACCTGAGG 59.232 45.833 0.00 0.00 32.58 3.86
2823 2885 1.903183 ACTCTAGAAACCTGAGGCCAC 59.097 52.381 5.01 0.00 32.58 5.01
2838 2900 3.573967 GAGGCCACCTTTTCTTCAAATGA 59.426 43.478 5.01 0.00 31.76 2.57
2877 2940 4.284490 TGCTGGAGATATTATGTCCTGGAC 59.716 45.833 19.96 19.96 42.86 4.02
2914 2977 4.907188 TTTTGCATCAATGTCATTTCGC 57.093 36.364 0.00 0.00 0.00 4.70
2922 2985 3.436704 TCAATGTCATTTCGCTGGAGAAC 59.563 43.478 0.00 0.00 0.00 3.01
2923 2986 2.839486 TGTCATTTCGCTGGAGAACT 57.161 45.000 0.00 0.00 0.00 3.01
2938 3001 4.160439 TGGAGAACTATCGAGCATTTCAGT 59.840 41.667 0.00 0.00 0.00 3.41
2992 3055 1.999648 TCATTTTGACTTGCTGGGCT 58.000 45.000 0.00 0.00 0.00 5.19
3024 3087 5.643664 TGCAAGAAATGATTTCATCTTCCG 58.356 37.500 19.02 0.00 42.10 4.30
3235 3298 4.461450 TGCCTGTAATTTATATGGGGCA 57.539 40.909 0.00 0.00 44.75 5.36
3244 3307 0.980423 TATATGGGGCATGCTACGCA 59.020 50.000 18.92 16.27 44.86 5.24
3295 3358 3.430453 ACATGGGTGTTGTTATGGAAGG 58.570 45.455 0.00 0.00 34.01 3.46
3296 3359 3.075283 ACATGGGTGTTGTTATGGAAGGA 59.925 43.478 0.00 0.00 34.01 3.36
3297 3360 3.885976 TGGGTGTTGTTATGGAAGGAA 57.114 42.857 0.00 0.00 0.00 3.36
3431 3496 4.328440 TGTGGAAGAAAATTTTGCAACACG 59.672 37.500 8.47 0.00 0.00 4.49
3498 3564 6.007076 TCATTTTCTTACAACATGGGTGCTA 58.993 36.000 0.00 0.00 0.00 3.49
3503 3569 0.810648 ACAACATGGGTGCTATTGCG 59.189 50.000 0.00 0.00 43.34 4.85
3513 3579 3.489229 GGGTGCTATTGCGGAAAGAAATC 60.489 47.826 0.00 0.00 43.34 2.17
3547 5011 5.752892 ATGATGTTCAGATGTTGCAGATC 57.247 39.130 0.52 0.52 0.00 2.75
3548 5012 4.840271 TGATGTTCAGATGTTGCAGATCT 58.160 39.130 4.81 4.81 0.00 2.75
3591 5076 2.503375 CGGACGGTCGTGTGCTAC 60.503 66.667 0.00 0.00 0.00 3.58
3592 5077 2.646719 GGACGGTCGTGTGCTACA 59.353 61.111 0.00 0.00 0.00 2.74
3593 5078 1.443872 GGACGGTCGTGTGCTACAG 60.444 63.158 0.00 0.00 0.00 2.74
3626 5115 3.006110 AGCATTTCCCAATTCATATGCCG 59.994 43.478 0.00 0.00 39.24 5.69
3709 5250 7.027874 TCTATGACCATGTTAGGAAAAAGGT 57.972 36.000 0.00 0.00 0.00 3.50
3724 5265 5.760743 GGAAAAAGGTGTAGATCTGGATAGC 59.239 44.000 5.18 0.00 0.00 2.97
3779 5320 1.896660 AACCATGTCGCCCACACAC 60.897 57.895 0.00 0.00 38.04 3.82
3781 5322 2.616330 CCATGTCGCCCACACACAC 61.616 63.158 0.00 0.00 38.04 3.82
3791 5332 1.337703 CCCACACACACATCCTTGTTG 59.662 52.381 0.00 0.00 32.34 3.33
3792 5333 2.023673 CCACACACACATCCTTGTTGT 58.976 47.619 0.00 0.00 32.34 3.32
3793 5334 2.426738 CCACACACACATCCTTGTTGTT 59.573 45.455 0.00 0.00 32.34 2.83
3794 5335 3.437428 CACACACACATCCTTGTTGTTG 58.563 45.455 0.00 0.00 32.34 3.33
3795 5336 3.088532 ACACACACATCCTTGTTGTTGT 58.911 40.909 0.00 0.00 32.34 3.32
3796 5337 4.095632 CACACACACATCCTTGTTGTTGTA 59.904 41.667 0.00 0.00 32.34 2.41
3797 5338 4.335315 ACACACACATCCTTGTTGTTGTAG 59.665 41.667 0.00 0.00 32.34 2.74
3817 5358 2.165845 AGTAGCCACTCGGTACATGTTC 59.834 50.000 2.30 0.00 46.03 3.18
3819 5360 1.082117 GCCACTCGGTACATGTTCGG 61.082 60.000 2.30 3.34 33.28 4.30
3822 5363 1.143183 CTCGGTACATGTTCGGGGG 59.857 63.158 2.30 0.00 0.00 5.40
3836 5377 1.131638 CGGGGGAGAATCTGAATCCA 58.868 55.000 8.58 0.00 34.62 3.41
3844 5385 1.139853 GAATCTGAATCCACGAGGGCT 59.860 52.381 0.00 0.00 36.21 5.19
3854 5395 3.414700 CGAGGGCTGTGTTGCGAC 61.415 66.667 0.00 0.00 0.00 5.19
3869 5410 1.346395 TGCGACCTTTGGAAGCTTCTA 59.654 47.619 25.05 17.65 32.31 2.10
3890 5431 4.854764 CTAGACAACACCAAACCGTCTAGG 60.855 50.000 14.30 0.00 46.45 3.02
3917 5458 8.837099 ATCCTCACAATCCCATAAATAACAAA 57.163 30.769 0.00 0.00 0.00 2.83
3929 5472 9.936759 CCCATAAATAACAAACAATACCAAACT 57.063 29.630 0.00 0.00 0.00 2.66
3988 5536 8.758829 ACTTTTCTTCCCAACAAATCTAAGTTT 58.241 29.630 0.00 0.00 0.00 2.66
3992 5540 6.609616 TCTTCCCAACAAATCTAAGTTTGGTT 59.390 34.615 4.63 0.00 42.07 3.67
3994 5542 5.069781 TCCCAACAAATCTAAGTTTGGTTGG 59.930 40.000 17.71 17.71 40.89 3.77
3995 5543 4.749598 CCAACAAATCTAAGTTTGGTTGGC 59.250 41.667 14.29 0.00 42.07 4.52
3996 5544 5.453198 CCAACAAATCTAAGTTTGGTTGGCT 60.453 40.000 14.29 0.00 42.07 4.75
3999 5547 3.806949 ATCTAAGTTTGGTTGGCTGGA 57.193 42.857 0.00 0.00 0.00 3.86
4000 5548 3.140325 TCTAAGTTTGGTTGGCTGGAG 57.860 47.619 0.00 0.00 0.00 3.86
4001 5549 2.708861 TCTAAGTTTGGTTGGCTGGAGA 59.291 45.455 0.00 0.00 0.00 3.71
4003 5551 0.111253 AGTTTGGTTGGCTGGAGAGG 59.889 55.000 0.00 0.00 0.00 3.69
4004 5552 0.895559 GTTTGGTTGGCTGGAGAGGG 60.896 60.000 0.00 0.00 0.00 4.30
4005 5553 2.080336 TTTGGTTGGCTGGAGAGGGG 62.080 60.000 0.00 0.00 0.00 4.79
4006 5554 2.610859 GGTTGGCTGGAGAGGGGA 60.611 66.667 0.00 0.00 0.00 4.81
4007 5555 2.003548 GGTTGGCTGGAGAGGGGAT 61.004 63.158 0.00 0.00 0.00 3.85
4008 5556 1.225704 GTTGGCTGGAGAGGGGATG 59.774 63.158 0.00 0.00 0.00 3.51
4009 5557 2.002977 TTGGCTGGAGAGGGGATGG 61.003 63.158 0.00 0.00 0.00 3.51
4010 5558 3.174265 GGCTGGAGAGGGGATGGG 61.174 72.222 0.00 0.00 0.00 4.00
4021 5569 2.836981 GAGGGGATGGGATCTCATAGTG 59.163 54.545 8.42 0.00 0.00 2.74
4025 5573 3.242867 GGATGGGATCTCATAGTGGTCA 58.757 50.000 8.42 0.00 0.00 4.02
4027 5575 4.503991 GGATGGGATCTCATAGTGGTCAAC 60.504 50.000 8.42 0.00 0.00 3.18
4043 5591 5.240623 GTGGTCAACAGTCATGGTTTTCATA 59.759 40.000 0.00 0.00 34.12 2.15
4084 5632 6.575267 GTCTTTAGGGGTTTTAGCACAAAAA 58.425 36.000 0.00 0.00 0.00 1.94
4085 5633 6.477688 GTCTTTAGGGGTTTTAGCACAAAAAC 59.522 38.462 11.49 11.49 44.80 2.43
4100 5648 8.776680 AGCACAAAAACGTTAGTTGTTTATAG 57.223 30.769 21.40 13.86 41.05 1.31
4101 5649 7.858879 AGCACAAAAACGTTAGTTGTTTATAGG 59.141 33.333 21.40 13.35 41.05 2.57
4136 5684 4.664688 ATGAATCCCACTCTTGTTCCTT 57.335 40.909 0.00 0.00 0.00 3.36
4155 5703 3.057315 CCTTGCACAAGTGGTCTAAATGG 60.057 47.826 9.41 0.00 36.72 3.16
4177 5730 5.301045 TGGTATGGTGTTCCTATTCGACTAG 59.699 44.000 2.91 2.91 34.23 2.57
4182 5735 5.833667 TGGTGTTCCTATTCGACTAGATGAT 59.166 40.000 11.13 0.00 34.23 2.45
4218 5771 8.664211 TCAATTATATGCAAACATACCGTACA 57.336 30.769 0.00 0.00 41.50 2.90
4219 5772 8.769891 TCAATTATATGCAAACATACCGTACAG 58.230 33.333 0.00 0.00 41.50 2.74
4220 5773 8.769891 CAATTATATGCAAACATACCGTACAGA 58.230 33.333 0.00 0.00 41.50 3.41
4221 5774 9.502091 AATTATATGCAAACATACCGTACAGAT 57.498 29.630 0.00 0.00 41.50 2.90
4251 5804 9.965902 AACACATTGTCTTCTTCTATCCTTATT 57.034 29.630 0.00 0.00 0.00 1.40
4264 5817 6.954944 TCTATCCTTATTAAATTGTGTGCGC 58.045 36.000 0.00 0.00 0.00 6.09
4266 5819 2.529894 CCTTATTAAATTGTGTGCGCGC 59.470 45.455 27.26 27.26 0.00 6.86
4268 5821 0.109964 ATTAAATTGTGTGCGCGCGT 60.110 45.000 32.35 10.56 0.00 6.01
4270 5823 2.107151 TAAATTGTGTGCGCGCGTGT 62.107 50.000 32.35 6.98 0.00 4.49
4277 5844 3.262686 TGCGCGCGTGTGTGTTTA 61.263 55.556 32.35 0.47 0.00 2.01
4285 5852 2.285892 CGCGTGTGTGTTTACAATCACA 60.286 45.455 0.00 9.53 41.37 3.58
4291 5858 6.039616 GTGTGTGTTTACAATCACATTGGTT 58.960 36.000 8.62 0.00 44.48 3.67
4303 5870 7.716123 ACAATCACATTGGTTTCATTTCATTGT 59.284 29.630 1.50 0.00 44.42 2.71
4317 5884 9.585099 TTCATTTCATTGTGGCTAAAACATATC 57.415 29.630 0.00 0.00 0.00 1.63
4353 5920 6.761714 CGAATACTATTAGCCCCCATAATCAC 59.238 42.308 0.00 0.00 0.00 3.06
4359 5963 3.634397 AGCCCCCATAATCACATATCG 57.366 47.619 0.00 0.00 0.00 2.92
4381 5985 5.294060 TCGTTATTACCAAAATCCGCCTAAC 59.706 40.000 0.00 0.00 0.00 2.34
4391 5995 6.459161 CCAAAATCCGCCTAACTATACCAAAC 60.459 42.308 0.00 0.00 0.00 2.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.314635 GCCTAAGATGGATGTGAAGCAAG 59.685 47.826 0.00 0.00 0.00 4.01
1 2 3.282021 GCCTAAGATGGATGTGAAGCAA 58.718 45.455 0.00 0.00 0.00 3.91
2 3 2.239402 TGCCTAAGATGGATGTGAAGCA 59.761 45.455 0.00 0.00 0.00 3.91
3 4 2.923121 TGCCTAAGATGGATGTGAAGC 58.077 47.619 0.00 0.00 0.00 3.86
4 5 3.819337 CCATGCCTAAGATGGATGTGAAG 59.181 47.826 0.00 0.00 42.81 3.02
5 6 3.459227 TCCATGCCTAAGATGGATGTGAA 59.541 43.478 0.00 0.00 43.71 3.18
6 7 3.047857 TCCATGCCTAAGATGGATGTGA 58.952 45.455 0.00 0.00 43.71 3.58
7 8 3.497103 TCCATGCCTAAGATGGATGTG 57.503 47.619 0.00 0.00 43.71 3.21
11 12 2.173356 CAAGGTCCATGCCTAAGATGGA 59.827 50.000 0.00 0.00 45.90 3.41
12 13 2.092212 ACAAGGTCCATGCCTAAGATGG 60.092 50.000 0.00 0.00 41.70 3.51
13 14 3.287867 ACAAGGTCCATGCCTAAGATG 57.712 47.619 0.00 0.00 38.03 2.90
14 15 4.660303 TGATACAAGGTCCATGCCTAAGAT 59.340 41.667 0.00 0.00 38.03 2.40
15 16 4.037222 TGATACAAGGTCCATGCCTAAGA 58.963 43.478 0.00 0.00 38.03 2.10
16 17 4.101585 TCTGATACAAGGTCCATGCCTAAG 59.898 45.833 0.00 0.00 38.03 2.18
17 18 4.037222 TCTGATACAAGGTCCATGCCTAA 58.963 43.478 0.00 0.00 38.03 2.69
18 19 3.653164 TCTGATACAAGGTCCATGCCTA 58.347 45.455 0.00 0.00 38.03 3.93
19 20 2.481441 TCTGATACAAGGTCCATGCCT 58.519 47.619 0.00 0.00 41.41 4.75
20 21 3.498774 ATCTGATACAAGGTCCATGCC 57.501 47.619 0.00 0.00 0.00 4.40
21 22 4.024556 CGAAATCTGATACAAGGTCCATGC 60.025 45.833 0.00 0.00 0.00 4.06
22 23 4.024556 GCGAAATCTGATACAAGGTCCATG 60.025 45.833 0.00 0.00 0.00 3.66
23 24 4.130118 GCGAAATCTGATACAAGGTCCAT 58.870 43.478 0.00 0.00 0.00 3.41
24 25 3.197766 AGCGAAATCTGATACAAGGTCCA 59.802 43.478 0.00 0.00 0.00 4.02
25 26 3.798202 AGCGAAATCTGATACAAGGTCC 58.202 45.455 0.00 0.00 0.00 4.46
26 27 7.484035 AAATAGCGAAATCTGATACAAGGTC 57.516 36.000 0.00 0.00 0.00 3.85
27 28 7.865706 AAAATAGCGAAATCTGATACAAGGT 57.134 32.000 0.00 0.00 0.00 3.50
56 57 9.632807 GCAACAAAATCCTTATACAATACAACA 57.367 29.630 0.00 0.00 0.00 3.33
57 58 9.632807 TGCAACAAAATCCTTATACAATACAAC 57.367 29.630 0.00 0.00 0.00 3.32
59 60 9.800433 CATGCAACAAAATCCTTATACAATACA 57.200 29.630 0.00 0.00 0.00 2.29
60 61 9.248291 CCATGCAACAAAATCCTTATACAATAC 57.752 33.333 0.00 0.00 0.00 1.89
61 62 9.194972 TCCATGCAACAAAATCCTTATACAATA 57.805 29.630 0.00 0.00 0.00 1.90
62 63 8.076910 TCCATGCAACAAAATCCTTATACAAT 57.923 30.769 0.00 0.00 0.00 2.71
63 64 7.473735 TCCATGCAACAAAATCCTTATACAA 57.526 32.000 0.00 0.00 0.00 2.41
64 65 7.473735 TTCCATGCAACAAAATCCTTATACA 57.526 32.000 0.00 0.00 0.00 2.29
65 66 6.476706 GCTTCCATGCAACAAAATCCTTATAC 59.523 38.462 0.00 0.00 0.00 1.47
66 67 6.154192 TGCTTCCATGCAACAAAATCCTTATA 59.846 34.615 0.00 0.00 40.29 0.98
67 68 5.046448 TGCTTCCATGCAACAAAATCCTTAT 60.046 36.000 0.00 0.00 40.29 1.73
68 69 4.282957 TGCTTCCATGCAACAAAATCCTTA 59.717 37.500 0.00 0.00 40.29 2.69
69 70 3.071312 TGCTTCCATGCAACAAAATCCTT 59.929 39.130 0.00 0.00 40.29 3.36
70 71 2.633967 TGCTTCCATGCAACAAAATCCT 59.366 40.909 0.00 0.00 40.29 3.24
71 72 3.042871 TGCTTCCATGCAACAAAATCC 57.957 42.857 0.00 0.00 40.29 3.01
72 73 6.044046 TGATATGCTTCCATGCAACAAAATC 58.956 36.000 0.00 0.00 46.61 2.17
73 74 5.979993 TGATATGCTTCCATGCAACAAAAT 58.020 33.333 0.00 0.00 46.61 1.82
74 75 5.402997 TGATATGCTTCCATGCAACAAAA 57.597 34.783 0.00 0.00 46.61 2.44
75 76 5.601583 ATGATATGCTTCCATGCAACAAA 57.398 34.783 0.00 0.00 46.61 2.83
76 77 5.601583 AATGATATGCTTCCATGCAACAA 57.398 34.783 0.00 0.00 46.61 2.83
77 78 5.601583 AAATGATATGCTTCCATGCAACA 57.398 34.783 0.00 0.00 46.61 3.33
78 79 6.291955 CGAAAAATGATATGCTTCCATGCAAC 60.292 38.462 0.00 0.00 46.61 4.17
79 80 5.749588 CGAAAAATGATATGCTTCCATGCAA 59.250 36.000 0.00 0.00 46.61 4.08
81 82 4.149396 GCGAAAAATGATATGCTTCCATGC 59.851 41.667 0.00 0.00 32.85 4.06
82 83 5.401376 CAGCGAAAAATGATATGCTTCCATG 59.599 40.000 0.00 0.00 32.85 3.66
83 84 5.508489 CCAGCGAAAAATGATATGCTTCCAT 60.508 40.000 0.00 0.00 35.44 3.41
84 85 4.202040 CCAGCGAAAAATGATATGCTTCCA 60.202 41.667 0.00 0.00 0.00 3.53
85 86 4.036734 TCCAGCGAAAAATGATATGCTTCC 59.963 41.667 0.00 0.00 0.00 3.46
86 87 5.173774 TCCAGCGAAAAATGATATGCTTC 57.826 39.130 0.00 0.00 0.00 3.86
87 88 5.581126 TTCCAGCGAAAAATGATATGCTT 57.419 34.783 0.00 0.00 0.00 3.91
88 89 4.498682 GCTTCCAGCGAAAAATGATATGCT 60.499 41.667 0.00 0.00 0.00 3.79
89 90 3.732721 GCTTCCAGCGAAAAATGATATGC 59.267 43.478 0.00 0.00 0.00 3.14
90 91 4.923893 TGCTTCCAGCGAAAAATGATATG 58.076 39.130 0.00 0.00 46.26 1.78
91 92 5.581126 TTGCTTCCAGCGAAAAATGATAT 57.419 34.783 0.00 0.00 46.26 1.63
92 93 5.048083 AGTTTGCTTCCAGCGAAAAATGATA 60.048 36.000 0.00 0.00 45.44 2.15
93 94 3.940209 TTGCTTCCAGCGAAAAATGAT 57.060 38.095 0.00 0.00 46.26 2.45
94 95 3.068024 AGTTTGCTTCCAGCGAAAAATGA 59.932 39.130 0.00 0.00 45.44 2.57
95 96 3.383761 AGTTTGCTTCCAGCGAAAAATG 58.616 40.909 0.00 0.00 45.44 2.32
96 97 3.733443 AGTTTGCTTCCAGCGAAAAAT 57.267 38.095 0.00 0.00 45.44 1.82
97 98 3.518634 AAGTTTGCTTCCAGCGAAAAA 57.481 38.095 0.00 0.00 45.44 1.94
98 99 3.130340 AGAAAGTTTGCTTCCAGCGAAAA 59.870 39.130 0.00 0.00 45.44 2.29
99 100 2.687935 AGAAAGTTTGCTTCCAGCGAAA 59.312 40.909 0.00 0.00 45.44 3.46
100 101 2.297701 AGAAAGTTTGCTTCCAGCGAA 58.702 42.857 0.00 0.00 46.26 4.70
101 102 1.967319 AGAAAGTTTGCTTCCAGCGA 58.033 45.000 0.00 0.00 46.26 4.93
102 103 2.781945 AAGAAAGTTTGCTTCCAGCG 57.218 45.000 0.00 0.00 46.26 5.18
103 104 6.701400 TCAATAAAAGAAAGTTTGCTTCCAGC 59.299 34.615 0.00 0.00 42.82 4.85
104 105 8.137437 TCTCAATAAAAGAAAGTTTGCTTCCAG 58.863 33.333 0.00 0.00 33.01 3.86
105 106 8.006298 TCTCAATAAAAGAAAGTTTGCTTCCA 57.994 30.769 0.00 0.00 33.01 3.53
106 107 8.871686 TTCTCAATAAAAGAAAGTTTGCTTCC 57.128 30.769 0.00 0.00 33.01 3.46
151 152 9.921637 TCCGTTGCAATTTAATTTTTCTTCTAT 57.078 25.926 0.59 0.00 0.00 1.98
152 153 9.751542 TTCCGTTGCAATTTAATTTTTCTTCTA 57.248 25.926 0.59 0.00 0.00 2.10
153 154 8.655651 TTCCGTTGCAATTTAATTTTTCTTCT 57.344 26.923 0.59 0.00 0.00 2.85
154 155 7.530525 GCTTCCGTTGCAATTTAATTTTTCTTC 59.469 33.333 0.59 0.00 0.00 2.87
155 156 7.011857 TGCTTCCGTTGCAATTTAATTTTTCTT 59.988 29.630 0.59 0.00 37.51 2.52
156 157 6.481644 TGCTTCCGTTGCAATTTAATTTTTCT 59.518 30.769 0.59 0.00 37.51 2.52
157 158 6.654122 TGCTTCCGTTGCAATTTAATTTTTC 58.346 32.000 0.59 0.00 37.51 2.29
158 159 6.610741 TGCTTCCGTTGCAATTTAATTTTT 57.389 29.167 0.59 0.00 37.51 1.94
159 160 6.610741 TTGCTTCCGTTGCAATTTAATTTT 57.389 29.167 0.59 0.00 44.24 1.82
168 169 4.782019 AGAATATTTGCTTCCGTTGCAA 57.218 36.364 0.00 0.00 46.90 4.08
169 170 5.392595 GGTTAGAATATTTGCTTCCGTTGCA 60.393 40.000 0.00 0.00 38.80 4.08
170 171 5.034797 GGTTAGAATATTTGCTTCCGTTGC 58.965 41.667 0.00 0.00 0.00 4.17
171 172 5.064198 TCGGTTAGAATATTTGCTTCCGTTG 59.936 40.000 14.60 0.00 37.26 4.10
172 173 5.064325 GTCGGTTAGAATATTTGCTTCCGTT 59.936 40.000 14.60 0.00 37.26 4.44
173 174 4.569564 GTCGGTTAGAATATTTGCTTCCGT 59.430 41.667 14.60 0.00 37.26 4.69
174 175 4.317839 CGTCGGTTAGAATATTTGCTTCCG 60.318 45.833 11.16 11.16 37.29 4.30
175 176 4.569564 ACGTCGGTTAGAATATTTGCTTCC 59.430 41.667 0.00 0.00 0.00 3.46
176 177 5.290158 TCACGTCGGTTAGAATATTTGCTTC 59.710 40.000 0.00 0.00 0.00 3.86
177 178 5.172934 TCACGTCGGTTAGAATATTTGCTT 58.827 37.500 0.00 0.00 0.00 3.91
178 179 4.751060 TCACGTCGGTTAGAATATTTGCT 58.249 39.130 0.00 0.00 0.00 3.91
179 180 5.163933 TGTTCACGTCGGTTAGAATATTTGC 60.164 40.000 0.00 0.00 0.00 3.68
180 181 6.397831 TGTTCACGTCGGTTAGAATATTTG 57.602 37.500 0.00 0.00 0.00 2.32
181 182 6.869913 TCTTGTTCACGTCGGTTAGAATATTT 59.130 34.615 0.00 0.00 0.00 1.40
182 183 6.392354 TCTTGTTCACGTCGGTTAGAATATT 58.608 36.000 0.00 0.00 0.00 1.28
183 184 5.957798 TCTTGTTCACGTCGGTTAGAATAT 58.042 37.500 0.00 0.00 0.00 1.28
184 185 5.375417 TCTTGTTCACGTCGGTTAGAATA 57.625 39.130 0.00 0.00 0.00 1.75
185 186 4.247267 TCTTGTTCACGTCGGTTAGAAT 57.753 40.909 0.00 0.00 0.00 2.40
186 187 3.713858 TCTTGTTCACGTCGGTTAGAA 57.286 42.857 0.00 0.00 0.00 2.10
187 188 3.067180 ACTTCTTGTTCACGTCGGTTAGA 59.933 43.478 0.00 0.00 0.00 2.10
188 189 3.378339 ACTTCTTGTTCACGTCGGTTAG 58.622 45.455 0.00 0.00 0.00 2.34
189 190 3.441496 ACTTCTTGTTCACGTCGGTTA 57.559 42.857 0.00 0.00 0.00 2.85
190 191 2.304751 ACTTCTTGTTCACGTCGGTT 57.695 45.000 0.00 0.00 0.00 4.44
191 192 3.441496 TTACTTCTTGTTCACGTCGGT 57.559 42.857 0.00 0.00 0.00 4.69
192 193 4.782252 TTTTACTTCTTGTTCACGTCGG 57.218 40.909 0.00 0.00 0.00 4.79
193 194 7.847078 TGTTTATTTTACTTCTTGTTCACGTCG 59.153 33.333 0.00 0.00 0.00 5.12
194 195 9.659830 ATGTTTATTTTACTTCTTGTTCACGTC 57.340 29.630 0.00 0.00 0.00 4.34
259 260 9.761504 TCAATTATTTGCTTCAAACAGAATCAA 57.238 25.926 0.00 0.00 39.75 2.57
260 261 9.414295 CTCAATTATTTGCTTCAAACAGAATCA 57.586 29.630 0.00 0.00 36.13 2.57
261 262 9.415544 ACTCAATTATTTGCTTCAAACAGAATC 57.584 29.630 0.00 0.00 36.13 2.52
262 263 9.415544 GACTCAATTATTTGCTTCAAACAGAAT 57.584 29.630 0.00 0.00 36.13 2.40
263 264 7.591057 CGACTCAATTATTTGCTTCAAACAGAA 59.409 33.333 0.00 0.00 36.13 3.02
264 265 7.077605 CGACTCAATTATTTGCTTCAAACAGA 58.922 34.615 0.00 0.00 36.13 3.41
265 266 6.306356 CCGACTCAATTATTTGCTTCAAACAG 59.694 38.462 0.00 0.00 36.13 3.16
266 267 6.148948 CCGACTCAATTATTTGCTTCAAACA 58.851 36.000 0.00 0.00 36.13 2.83
267 268 6.088085 CACCGACTCAATTATTTGCTTCAAAC 59.912 38.462 0.00 0.00 36.13 2.93
268 269 6.148948 CACCGACTCAATTATTTGCTTCAAA 58.851 36.000 0.00 0.00 37.75 2.69
269 270 5.335583 CCACCGACTCAATTATTTGCTTCAA 60.336 40.000 0.00 0.00 32.61 2.69
270 271 4.155826 CCACCGACTCAATTATTTGCTTCA 59.844 41.667 0.00 0.00 32.61 3.02
271 272 4.394920 TCCACCGACTCAATTATTTGCTTC 59.605 41.667 0.00 0.00 32.61 3.86
272 273 4.331968 TCCACCGACTCAATTATTTGCTT 58.668 39.130 0.00 0.00 32.61 3.91
273 274 3.950397 TCCACCGACTCAATTATTTGCT 58.050 40.909 0.00 0.00 32.61 3.91
274 275 4.695217 TTCCACCGACTCAATTATTTGC 57.305 40.909 0.00 0.00 32.61 3.68
275 276 6.007936 TGTTTCCACCGACTCAATTATTTG 57.992 37.500 0.00 0.00 0.00 2.32
276 277 6.642707 TTGTTTCCACCGACTCAATTATTT 57.357 33.333 0.00 0.00 0.00 1.40
277 278 6.834168 ATTGTTTCCACCGACTCAATTATT 57.166 33.333 0.00 0.00 0.00 1.40
278 279 6.659242 AGAATTGTTTCCACCGACTCAATTAT 59.341 34.615 0.00 0.00 34.50 1.28
279 280 6.001460 AGAATTGTTTCCACCGACTCAATTA 58.999 36.000 0.00 0.00 34.50 1.40
280 281 4.827284 AGAATTGTTTCCACCGACTCAATT 59.173 37.500 0.00 0.00 35.79 2.32
281 282 4.398319 AGAATTGTTTCCACCGACTCAAT 58.602 39.130 0.00 0.00 31.84 2.57
282 283 3.815809 AGAATTGTTTCCACCGACTCAA 58.184 40.909 0.00 0.00 31.84 3.02
283 284 3.485463 AGAATTGTTTCCACCGACTCA 57.515 42.857 0.00 0.00 31.84 3.41
284 285 4.537015 CAAAGAATTGTTTCCACCGACTC 58.463 43.478 0.00 0.00 31.84 3.36
285 286 3.317993 CCAAAGAATTGTTTCCACCGACT 59.682 43.478 0.00 0.00 34.60 4.18
286 287 3.067601 ACCAAAGAATTGTTTCCACCGAC 59.932 43.478 0.00 0.00 34.60 4.79
287 288 3.292460 ACCAAAGAATTGTTTCCACCGA 58.708 40.909 0.00 0.00 34.60 4.69
288 289 3.638484 GACCAAAGAATTGTTTCCACCG 58.362 45.455 0.00 0.00 34.60 4.94
289 290 3.638484 CGACCAAAGAATTGTTTCCACC 58.362 45.455 0.00 0.00 34.60 4.61
290 291 3.049912 GCGACCAAAGAATTGTTTCCAC 58.950 45.455 0.00 0.00 34.60 4.02
291 292 2.690497 TGCGACCAAAGAATTGTTTCCA 59.310 40.909 0.00 0.00 34.60 3.53
292 293 3.363341 TGCGACCAAAGAATTGTTTCC 57.637 42.857 0.00 0.00 34.60 3.13
332 347 5.682943 TTCATGTTAGAAGTTTTGTCCGG 57.317 39.130 0.00 0.00 0.00 5.14
333 348 8.504005 AGTATTTCATGTTAGAAGTTTTGTCCG 58.496 33.333 0.00 0.00 0.00 4.79
339 354 9.706691 TTCGAGAGTATTTCATGTTAGAAGTTT 57.293 29.630 0.00 0.00 0.00 2.66
358 373 6.695713 TCGGTCATATTACAATTGTTCGAGAG 59.304 38.462 17.78 3.56 0.00 3.20
362 377 5.901884 GCTTCGGTCATATTACAATTGTTCG 59.098 40.000 17.78 8.28 0.00 3.95
377 392 3.678056 AACTGTAGATTGCTTCGGTCA 57.322 42.857 0.00 0.00 30.76 4.02
378 393 5.147162 CAAAAACTGTAGATTGCTTCGGTC 58.853 41.667 0.00 0.00 30.76 4.79
382 397 5.280945 TGCACAAAAACTGTAGATTGCTTC 58.719 37.500 0.00 0.00 36.10 3.86
460 475 4.200874 TCCGAACTTTAGTTTGCTTTCCA 58.799 39.130 4.61 0.00 38.56 3.53
466 481 3.619233 TGCTTCCGAACTTTAGTTTGC 57.381 42.857 4.61 2.83 38.56 3.68
479 494 1.002366 CGTGAGGATCTTTGCTTCCG 58.998 55.000 0.00 0.00 37.10 4.30
510 526 8.607441 AGGATTATTTTTGTTTGCTTCCTTTC 57.393 30.769 0.00 0.00 0.00 2.62
511 527 8.210265 TGAGGATTATTTTTGTTTGCTTCCTTT 58.790 29.630 0.00 0.00 31.42 3.11
518 534 6.019881 GCCGTATGAGGATTATTTTTGTTTGC 60.020 38.462 0.00 0.00 0.00 3.68
604 643 6.069381 AGGACTATTGCTTCCTAAACAGGATT 60.069 38.462 0.00 0.00 40.70 3.01
624 663 7.255942 CCTTATTTGTTTCCAATTGTGAGGACT 60.256 37.037 4.43 0.00 32.62 3.85
632 671 7.569226 CGTTGCTTCCTTATTTGTTTCCAATTG 60.569 37.037 0.00 0.00 0.00 2.32
633 672 6.423604 CGTTGCTTCCTTATTTGTTTCCAATT 59.576 34.615 0.00 0.00 0.00 2.32
789 828 0.396139 TCCCCCGCGTGAGTTATACT 60.396 55.000 4.92 0.00 0.00 2.12
790 829 0.031721 CTCCCCCGCGTGAGTTATAC 59.968 60.000 4.92 0.00 0.00 1.47
791 830 0.396139 ACTCCCCCGCGTGAGTTATA 60.396 55.000 14.96 0.00 38.67 0.98
792 831 1.262640 AACTCCCCCGCGTGAGTTAT 61.263 55.000 25.10 10.24 46.93 1.89
793 832 1.909781 AACTCCCCCGCGTGAGTTA 60.910 57.895 25.10 0.00 46.93 2.24
794 833 3.239253 AACTCCCCCGCGTGAGTT 61.239 61.111 22.46 22.46 44.73 3.01
814 854 0.456221 ACGTCGTTGGATCTGCTAGG 59.544 55.000 0.00 0.00 0.00 3.02
903 943 3.020984 GGAACCGCAATTCCATTAAGGA 58.979 45.455 10.44 0.00 46.49 3.36
904 944 3.436700 GGAACCGCAATTCCATTAAGG 57.563 47.619 10.44 0.00 46.49 2.69
1005 1048 2.122954 GGGGTGGGAGGACTGACT 59.877 66.667 0.00 0.00 0.00 3.41
1006 1049 3.009714 GGGGGTGGGAGGACTGAC 61.010 72.222 0.00 0.00 0.00 3.51
1737 1789 2.504244 GTGACGTCGAAGAGCCGG 60.504 66.667 11.62 0.00 36.95 6.13
2034 2086 4.222847 GCCGGGATGACGAGGGTC 62.223 72.222 2.18 0.00 43.71 4.46
2424 2476 5.362556 ACATGTTGTGTTACATTGCTCTC 57.637 39.130 0.00 0.00 38.01 3.20
2445 2498 6.372659 ACAGACATGATACAGATCACCAAAAC 59.627 38.462 0.00 0.00 44.90 2.43
2451 2504 7.306457 CGATTCAACAGACATGATACAGATCAC 60.306 40.741 0.00 0.00 44.90 3.06
2453 2506 6.920210 TCGATTCAACAGACATGATACAGATC 59.080 38.462 0.00 0.00 0.00 2.75
2474 2527 7.224753 GTGTATCACAACCAATGTAAGATCGAT 59.775 37.037 0.00 0.00 41.46 3.59
2500 2553 6.332630 GTGTTTACTTCCATTCCATTCCATG 58.667 40.000 0.00 0.00 0.00 3.66
2553 2611 5.590530 TTGTGAAGCAAACAATGGTACTT 57.409 34.783 0.00 0.00 39.29 2.24
2554 2612 5.590530 TTTGTGAAGCAAACAATGGTACT 57.409 34.783 0.00 0.00 41.68 2.73
2654 2716 6.538742 ACATACTAGCAATAGCAACACGAAAT 59.461 34.615 0.00 0.00 45.49 2.17
2659 2721 5.266242 GCAACATACTAGCAATAGCAACAC 58.734 41.667 0.00 0.00 45.49 3.32
2707 2769 2.485814 GTCTGTTGTTGATCAGAAGCCC 59.514 50.000 0.00 0.00 41.41 5.19
2763 2825 2.991190 GCAGTTGCAATCTTCAATGTGG 59.009 45.455 0.59 0.00 41.59 4.17
2819 2881 4.320608 TGTCATTTGAAGAAAAGGTGGC 57.679 40.909 0.00 0.00 31.46 5.01
2823 2885 7.249186 TGCAAAATGTCATTTGAAGAAAAGG 57.751 32.000 11.54 0.00 41.73 3.11
2877 2940 2.609350 CAAAATTGATGCAACCGGGAG 58.391 47.619 6.32 0.00 0.00 4.30
2914 2977 4.686972 TGAAATGCTCGATAGTTCTCCAG 58.313 43.478 10.13 0.00 37.40 3.86
2922 2985 5.825905 CAGATCACTGAAATGCTCGATAG 57.174 43.478 0.00 0.00 46.03 2.08
2938 3001 2.196742 AAGGCACCCCTATCAGATCA 57.803 50.000 0.00 0.00 41.90 2.92
2992 3055 6.040729 TGAAATCATTTCTTGCAGTCCAGAAA 59.959 34.615 12.43 12.43 40.32 2.52
3024 3087 2.225017 TGGAGGTTTCCCTGAATGTTCC 60.225 50.000 0.00 0.00 42.86 3.62
3044 3107 6.695278 TCTTTAAATTTCCTTCTGCGTTTGTG 59.305 34.615 0.00 0.00 0.00 3.33
3215 3278 4.381932 GCATGCCCCATATAAATTACAGGC 60.382 45.833 6.36 0.00 39.64 4.85
3244 3307 1.234615 CCTTCCGCAACAACACCGAT 61.235 55.000 0.00 0.00 0.00 4.18
3466 3532 7.972277 CCATGTTGTAAGAAAATGAAGATGGAG 59.028 37.037 0.00 0.00 38.92 3.86
3472 3538 5.634859 GCACCCATGTTGTAAGAAAATGAAG 59.365 40.000 0.00 0.00 0.00 3.02
3498 3564 6.149633 GTGTTACAAGATTTCTTTCCGCAAT 58.850 36.000 0.00 0.00 33.11 3.56
3513 3579 8.886719 ACATCTGAACATCATATGTGTTACAAG 58.113 33.333 17.82 15.66 40.97 3.16
3558 5022 0.326238 TCCGCCACCTCCTCCTATTT 60.326 55.000 0.00 0.00 0.00 1.40
3686 5227 6.659242 ACACCTTTTTCCTAACATGGTCATAG 59.341 38.462 0.00 0.00 0.00 2.23
3709 5250 1.613925 GTGGCGCTATCCAGATCTACA 59.386 52.381 7.64 0.00 36.67 2.74
3724 5265 0.174845 TGTTCTATTCTCCGGTGGCG 59.825 55.000 0.00 0.00 0.00 5.69
3779 5320 4.154195 GGCTACTACAACAACAAGGATGTG 59.846 45.833 0.00 0.00 40.46 3.21
3781 5322 4.154195 GTGGCTACTACAACAACAAGGATG 59.846 45.833 0.00 0.00 0.00 3.51
3791 5332 2.489329 TGTACCGAGTGGCTACTACAAC 59.511 50.000 1.28 0.20 37.25 3.32
3792 5333 2.794103 TGTACCGAGTGGCTACTACAA 58.206 47.619 1.28 0.00 37.25 2.41
3793 5334 2.495155 TGTACCGAGTGGCTACTACA 57.505 50.000 1.28 0.44 37.25 2.74
3794 5335 2.686915 ACATGTACCGAGTGGCTACTAC 59.313 50.000 1.28 0.00 37.25 2.73
3795 5336 3.008835 ACATGTACCGAGTGGCTACTA 57.991 47.619 1.28 0.00 37.25 1.82
3796 5337 1.848652 ACATGTACCGAGTGGCTACT 58.151 50.000 0.69 0.69 40.66 2.57
3797 5338 2.537401 GAACATGTACCGAGTGGCTAC 58.463 52.381 0.00 0.00 39.70 3.58
3817 5358 1.131638 TGGATTCAGATTCTCCCCCG 58.868 55.000 0.00 0.00 0.00 5.73
3819 5360 1.762957 TCGTGGATTCAGATTCTCCCC 59.237 52.381 0.00 0.00 0.00 4.81
3822 5363 2.804933 GCCCTCGTGGATTCAGATTCTC 60.805 54.545 4.76 0.00 35.39 2.87
3836 5377 3.923864 TCGCAACACAGCCCTCGT 61.924 61.111 0.00 0.00 0.00 4.18
3844 5385 1.021202 CTTCCAAAGGTCGCAACACA 58.979 50.000 0.00 0.00 0.00 3.72
3854 5395 4.214332 GTGTTGTCTAGAAGCTTCCAAAGG 59.786 45.833 22.81 8.78 0.00 3.11
3869 5410 2.224209 CCTAGACGGTTTGGTGTTGTCT 60.224 50.000 0.00 0.00 42.22 3.41
3890 5431 7.004086 TGTTATTTATGGGATTGTGAGGATCC 58.996 38.462 2.48 2.48 41.93 3.36
3924 5465 8.137437 ACTAGATTTGTGATTTCACCAAGTTTG 58.863 33.333 8.16 1.37 45.88 2.93
3929 5472 6.206634 GGACACTAGATTTGTGATTTCACCAA 59.793 38.462 8.16 4.16 45.88 3.67
3982 5530 2.224769 CCTCTCCAGCCAACCAAACTTA 60.225 50.000 0.00 0.00 0.00 2.24
3988 5536 2.788230 ATCCCCTCTCCAGCCAACCA 62.788 60.000 0.00 0.00 0.00 3.67
3992 5540 2.367377 CCATCCCCTCTCCAGCCA 60.367 66.667 0.00 0.00 0.00 4.75
3994 5542 1.463018 ATCCCATCCCCTCTCCAGC 60.463 63.158 0.00 0.00 0.00 4.85
3995 5543 0.193069 AGATCCCATCCCCTCTCCAG 59.807 60.000 0.00 0.00 0.00 3.86
3996 5544 0.192064 GAGATCCCATCCCCTCTCCA 59.808 60.000 0.00 0.00 0.00 3.86
3999 5547 2.732507 ACTATGAGATCCCATCCCCTCT 59.267 50.000 0.00 0.00 0.00 3.69
4000 5548 2.836981 CACTATGAGATCCCATCCCCTC 59.163 54.545 0.00 0.00 0.00 4.30
4001 5549 2.496142 CCACTATGAGATCCCATCCCCT 60.496 54.545 0.00 0.00 0.00 4.79
4003 5551 2.569404 GACCACTATGAGATCCCATCCC 59.431 54.545 0.00 0.00 0.00 3.85
4004 5552 3.242867 TGACCACTATGAGATCCCATCC 58.757 50.000 0.00 0.00 0.00 3.51
4005 5553 4.101585 TGTTGACCACTATGAGATCCCATC 59.898 45.833 0.00 0.00 0.00 3.51
4006 5554 4.040047 TGTTGACCACTATGAGATCCCAT 58.960 43.478 0.00 0.00 0.00 4.00
4007 5555 3.449918 TGTTGACCACTATGAGATCCCA 58.550 45.455 0.00 0.00 0.00 4.37
4008 5556 3.452627 ACTGTTGACCACTATGAGATCCC 59.547 47.826 0.00 0.00 0.00 3.85
4009 5557 4.160439 TGACTGTTGACCACTATGAGATCC 59.840 45.833 0.00 0.00 0.00 3.36
4010 5558 5.330455 TGACTGTTGACCACTATGAGATC 57.670 43.478 0.00 0.00 0.00 2.75
4021 5569 4.853924 ATGAAAACCATGACTGTTGACC 57.146 40.909 0.00 0.00 33.39 4.02
4043 5591 3.614568 AGACGGGGGTCAGTAAGATAT 57.385 47.619 0.00 0.00 0.00 1.63
4051 5599 1.905512 CCCTAAAGACGGGGGTCAG 59.094 63.158 0.00 0.00 39.01 3.51
4052 5600 4.140354 CCCTAAAGACGGGGGTCA 57.860 61.111 0.00 0.00 39.01 4.02
4071 5619 7.870588 AACAACTAACGTTTTTGTGCTAAAA 57.129 28.000 21.83 0.00 33.73 1.52
4074 5622 9.866936 CTATAAACAACTAACGTTTTTGTGCTA 57.133 29.630 21.83 17.40 37.69 3.49
4084 5632 9.669353 CGTACATATCCTATAAACAACTAACGT 57.331 33.333 0.00 0.00 0.00 3.99
4085 5633 9.669353 ACGTACATATCCTATAAACAACTAACG 57.331 33.333 0.00 0.00 0.00 3.18
4099 5647 5.187186 GGGATTCATACCACGTACATATCCT 59.813 44.000 0.00 0.00 31.81 3.24
4100 5648 5.046878 TGGGATTCATACCACGTACATATCC 60.047 44.000 0.00 0.00 35.32 2.59
4101 5649 6.032956 TGGGATTCATACCACGTACATATC 57.967 41.667 0.00 0.00 35.32 1.63
4136 5684 3.222173 ACCATTTAGACCACTTGTGCA 57.778 42.857 0.00 0.00 0.00 4.57
4144 5692 4.538490 AGGAACACCATACCATTTAGACCA 59.462 41.667 0.00 0.00 0.00 4.02
4145 5693 5.112129 AGGAACACCATACCATTTAGACC 57.888 43.478 0.00 0.00 0.00 3.85
4155 5703 6.630444 TCTAGTCGAATAGGAACACCATAC 57.370 41.667 18.94 0.00 0.00 2.39
4192 5745 9.278978 TGTACGGTATGTTTGCATATAATTGAT 57.721 29.630 0.00 0.00 39.49 2.57
4203 5756 3.936453 TCCAATCTGTACGGTATGTTTGC 59.064 43.478 0.64 0.00 0.00 3.68
4205 5758 5.410439 GTGTTCCAATCTGTACGGTATGTTT 59.590 40.000 0.64 0.00 0.00 2.83
4206 5759 4.933400 GTGTTCCAATCTGTACGGTATGTT 59.067 41.667 0.64 0.00 0.00 2.71
4207 5760 4.020928 TGTGTTCCAATCTGTACGGTATGT 60.021 41.667 0.64 0.00 0.00 2.29
4208 5761 4.500127 TGTGTTCCAATCTGTACGGTATG 58.500 43.478 0.64 2.33 0.00 2.39
4209 5762 4.811969 TGTGTTCCAATCTGTACGGTAT 57.188 40.909 0.64 0.00 0.00 2.73
4210 5763 4.811969 ATGTGTTCCAATCTGTACGGTA 57.188 40.909 0.64 0.00 0.00 4.02
4212 5765 3.751175 ACAATGTGTTCCAATCTGTACGG 59.249 43.478 0.00 0.00 0.00 4.02
4214 5767 6.428159 AGAAGACAATGTGTTCCAATCTGTAC 59.572 38.462 17.95 0.00 36.64 2.90
4215 5768 6.533730 AGAAGACAATGTGTTCCAATCTGTA 58.466 36.000 17.95 0.00 36.64 2.74
4216 5769 5.380043 AGAAGACAATGTGTTCCAATCTGT 58.620 37.500 17.95 0.00 36.64 3.41
4217 5770 5.954296 AGAAGACAATGTGTTCCAATCTG 57.046 39.130 17.95 0.00 36.64 2.90
4218 5771 6.302269 AGAAGAAGACAATGTGTTCCAATCT 58.698 36.000 17.95 15.63 36.64 2.40
4219 5772 6.566197 AGAAGAAGACAATGTGTTCCAATC 57.434 37.500 17.95 13.97 36.64 2.67
4220 5773 7.337942 GGATAGAAGAAGACAATGTGTTCCAAT 59.662 37.037 17.95 6.59 36.64 3.16
4221 5774 6.655003 GGATAGAAGAAGACAATGTGTTCCAA 59.345 38.462 17.95 3.84 36.64 3.53
4251 5804 1.439529 CACGCGCGCACACAATTTA 60.440 52.632 32.58 0.00 0.00 1.40
4262 5815 0.383737 ATTGTAAACACACACGCGCG 60.384 50.000 30.96 30.96 0.00 6.86
4264 5817 2.285892 TGTGATTGTAAACACACACGCG 60.286 45.455 3.53 3.53 39.97 6.01
4277 5844 7.716123 ACAATGAAATGAAACCAATGTGATTGT 59.284 29.630 0.00 0.00 38.59 2.71
4285 5852 5.231702 AGCCACAATGAAATGAAACCAAT 57.768 34.783 0.00 0.00 0.00 3.16
4291 5858 9.585099 GATATGTTTTAGCCACAATGAAATGAA 57.415 29.630 0.00 0.00 0.00 2.57
4303 5870 6.320164 GTGGTTGTATGGATATGTTTTAGCCA 59.680 38.462 0.00 0.00 0.00 4.75
4317 5884 6.367969 GGCTAATAGTATTCGTGGTTGTATGG 59.632 42.308 0.00 0.00 0.00 2.74
4353 5920 6.148811 AGGCGGATTTTGGTAATAACGATATG 59.851 38.462 0.00 0.00 0.00 1.78
4359 5963 6.688637 AGTTAGGCGGATTTTGGTAATAAC 57.311 37.500 0.00 0.00 0.00 1.89
4374 5978 5.180271 TCCTTTGTTTGGTATAGTTAGGCG 58.820 41.667 0.00 0.00 0.00 5.52
4391 5995 8.945481 TGTGCCATTTTATTCATAATCCTTTG 57.055 30.769 0.00 0.00 0.00 2.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.