Multiple sequence alignment - TraesCS3D01G372800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G372800 chr3D 100.000 5961 0 0 1 5961 486047489 486041529 0.000000e+00 11008.0
1 TraesCS3D01G372800 chr3D 92.420 343 18 8 1 338 599434007 599433668 3.230000e-132 483.0
2 TraesCS3D01G372800 chr3D 92.405 79 4 1 5384 5462 486042026 486041950 1.760000e-20 111.0
3 TraesCS3D01G372800 chr3D 92.405 79 4 1 5464 5540 486042106 486042028 1.760000e-20 111.0
4 TraesCS3D01G372800 chr3D 93.878 49 2 1 293 340 8306355 8306307 8.290000e-09 73.1
5 TraesCS3D01G372800 chr3D 93.878 49 2 1 293 340 397958041 397958089 8.290000e-09 73.1
6 TraesCS3D01G372800 chr3D 86.538 52 6 1 3260 3311 506116832 506116882 8.350000e-04 56.5
7 TraesCS3D01G372800 chr3A 95.012 2085 88 12 355 2431 629225822 629223746 0.000000e+00 3260.0
8 TraesCS3D01G372800 chr3A 93.594 1764 72 21 3723 5466 629219207 629217465 0.000000e+00 2593.0
9 TraesCS3D01G372800 chr3A 93.667 1200 57 12 2428 3614 629220395 629219202 0.000000e+00 1777.0
10 TraesCS3D01G372800 chr3A 94.273 227 9 2 5739 5961 629215961 629215735 1.590000e-90 344.0
11 TraesCS3D01G372800 chr3A 91.441 222 19 0 5501 5722 629217139 629216918 7.510000e-79 305.0
12 TraesCS3D01G372800 chr3A 93.506 77 3 1 5464 5538 629217547 629217471 4.880000e-21 113.0
13 TraesCS3D01G372800 chr3A 97.778 45 1 0 5521 5565 679696604 679696648 1.780000e-10 78.7
14 TraesCS3D01G372800 chr3B 92.133 1716 98 14 3728 5436 648741238 648739553 0.000000e+00 2386.0
15 TraesCS3D01G372800 chr3B 90.014 1432 81 25 343 1735 648744635 648743227 0.000000e+00 1796.0
16 TraesCS3D01G372800 chr3B 92.170 447 28 6 1967 2410 648742963 648742521 5.070000e-175 625.0
17 TraesCS3D01G372800 chr3B 90.837 251 16 5 3313 3558 648742239 648741991 4.450000e-86 329.0
18 TraesCS3D01G372800 chr5D 96.166 313 8 3 1 310 513910590 513910279 5.330000e-140 508.0
19 TraesCS3D01G372800 chr5D 96.154 312 9 3 2 310 498436097 498436408 1.920000e-139 507.0
20 TraesCS3D01G372800 chr5D 95.833 312 11 2 1 310 562432463 562432774 2.480000e-138 503.0
21 TraesCS3D01G372800 chr5D 76.984 126 19 9 3189 3308 347279885 347280006 4.990000e-06 63.9
22 TraesCS3D01G372800 chr5D 85.965 57 5 2 3254 3309 407908129 407908183 2.320000e-04 58.4
23 TraesCS3D01G372800 chr6D 96.141 311 10 2 1 310 422634108 422634417 1.920000e-139 507.0
24 TraesCS3D01G372800 chr6D 95.847 313 10 2 1 310 147646622 147646934 2.480000e-138 503.0
25 TraesCS3D01G372800 chr6D 83.392 283 20 11 1 281 107385385 107385128 2.780000e-58 237.0
26 TraesCS3D01G372800 chr6D 92.593 54 3 1 5521 5573 292073412 292073359 6.410000e-10 76.8
27 TraesCS3D01G372800 chr6D 95.652 46 0 2 293 337 422067633 422067677 8.290000e-09 73.1
28 TraesCS3D01G372800 chr6D 100.000 28 0 0 2424 2451 232367188 232367161 1.100000e-02 52.8
29 TraesCS3D01G372800 chr1D 96.154 312 9 2 1 310 247134293 247133983 1.920000e-139 507.0
30 TraesCS3D01G372800 chr1D 96.141 311 11 1 1 310 452239898 452239588 1.920000e-139 507.0
31 TraesCS3D01G372800 chr1D 88.136 177 21 0 3750 3926 366245752 366245576 1.680000e-50 211.0
32 TraesCS3D01G372800 chr1D 94.309 123 6 1 3611 3732 469018690 469018812 2.840000e-43 187.0
33 TraesCS3D01G372800 chr4D 96.141 311 9 3 1 310 389479247 389479555 6.890000e-139 505.0
34 TraesCS3D01G372800 chr4D 95.082 122 6 0 3611 3732 45923914 45923793 6.100000e-45 193.0
35 TraesCS3D01G372800 chr4D 76.157 281 51 12 2648 2914 134758732 134758454 3.750000e-27 134.0
36 TraesCS3D01G372800 chr4D 88.060 67 3 3 5496 5557 107698298 107698232 2.300000e-09 75.0
37 TraesCS3D01G372800 chr7A 76.102 590 84 37 2733 3307 115262917 115262370 7.670000e-64 255.0
38 TraesCS3D01G372800 chr7A 95.918 49 0 2 293 340 150879835 150879882 1.780000e-10 78.7
39 TraesCS3D01G372800 chr6B 80.368 326 58 6 2982 3305 15082947 15082626 5.970000e-60 243.0
40 TraesCS3D01G372800 chr6B 94.958 119 6 0 3611 3729 150238241 150238123 2.840000e-43 187.0
41 TraesCS3D01G372800 chr6B 92.188 128 9 1 3604 3731 174950666 174950792 4.750000e-41 180.0
42 TraesCS3D01G372800 chr6B 91.304 69 4 2 5493 5559 82331392 82331324 6.360000e-15 93.5
43 TraesCS3D01G372800 chr1B 87.778 180 22 0 3747 3926 491240104 491240283 1.680000e-50 211.0
44 TraesCS3D01G372800 chr1B 95.745 47 2 0 5521 5567 329485262 329485216 6.410000e-10 76.8
45 TraesCS3D01G372800 chr1B 83.333 66 9 2 3242 3307 403796330 403796393 6.450000e-05 60.2
46 TraesCS3D01G372800 chr1A 87.778 180 22 0 3747 3926 465503159 465503338 1.680000e-50 211.0
47 TraesCS3D01G372800 chr1A 95.745 47 0 2 293 338 56862229 56862274 2.300000e-09 75.0
48 TraesCS3D01G372800 chr1A 95.652 46 2 0 293 338 64512429 64512474 2.300000e-09 75.0
49 TraesCS3D01G372800 chr2A 95.763 118 5 0 3611 3728 609453824 609453941 2.190000e-44 191.0
50 TraesCS3D01G372800 chr2A 89.855 69 2 4 5493 5559 49850928 49850993 3.830000e-12 84.2
51 TraesCS3D01G372800 chr4A 95.726 117 5 0 3610 3726 187572347 187572231 7.890000e-44 189.0
52 TraesCS3D01G372800 chr4A 92.000 125 7 3 3611 3734 575399555 575399433 7.940000e-39 172.0
53 TraesCS3D01G372800 chr4A 72.180 399 87 17 2583 2963 396803075 396802683 3.800000e-17 100.0
54 TraesCS3D01G372800 chr2B 93.548 124 8 0 3611 3734 305325235 305325112 1.020000e-42 185.0
55 TraesCS3D01G372800 chr2B 82.877 146 24 1 2851 2996 569982254 569982398 4.850000e-26 130.0
56 TraesCS3D01G372800 chr2B 85.507 69 6 3 5493 5559 616968352 616968286 1.070000e-07 69.4
57 TraesCS3D01G372800 chr2B 97.059 34 1 0 2427 2460 38224413 38224380 2.320000e-04 58.4
58 TraesCS3D01G372800 chr7D 93.388 121 8 0 3608 3728 275790313 275790193 4.750000e-41 180.0
59 TraesCS3D01G372800 chr7B 95.506 89 4 0 1001 1089 628584119 628584031 6.230000e-30 143.0
60 TraesCS3D01G372800 chr7B 91.045 67 4 2 5495 5559 672525206 672525140 8.230000e-14 89.8
61 TraesCS3D01G372800 chr7B 87.234 47 5 1 3260 3306 646609415 646609370 1.100000e-02 52.8
62 TraesCS3D01G372800 chr2D 93.878 49 1 2 293 340 616568441 616568488 8.290000e-09 73.1
63 TraesCS3D01G372800 chr2D 89.091 55 3 2 3254 3307 522487056 522487004 1.390000e-06 65.8
64 TraesCS3D01G372800 chr5B 82.857 70 11 1 3242 3311 597305559 597305627 1.790000e-05 62.1
65 TraesCS3D01G372800 chr5A 100.000 28 0 0 2427 2454 485383818 485383845 1.100000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G372800 chr3D 486041529 486047489 5960 True 11008.000000 11008 100.000000 1 5961 1 chr3D.!!$R2 5960
1 TraesCS3D01G372800 chr3A 629215735 629225822 10087 True 1398.666667 3260 93.582167 355 5961 6 chr3A.!!$R1 5606
2 TraesCS3D01G372800 chr3B 648739553 648744635 5082 True 1284.000000 2386 91.288500 343 5436 4 chr3B.!!$R1 5093
3 TraesCS3D01G372800 chr7A 115262370 115262917 547 True 255.000000 255 76.102000 2733 3307 1 chr7A.!!$R1 574

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
179 180 0.036306 TCCCTTTCCGAAAGAGGCAC 59.964 55.0 20.43 0.00 41.02 5.01 F
205 206 0.095417 GCCTCTCGCGAAATCACAAC 59.905 55.0 11.33 0.00 0.00 3.32 F
213 214 0.165944 CGAAATCACAACCGTGCCTC 59.834 55.0 0.00 0.00 43.28 4.70 F
237 238 0.250338 GGAAGCAAACCCGTGACTCT 60.250 55.0 0.00 0.00 0.00 3.24 F
290 291 0.320421 TCCTTTCCGAAAGAGGCACG 60.320 55.0 20.43 4.67 41.02 5.34 F
1238 1265 0.526739 GTTTTCGGTGTGGTTGTGGC 60.527 55.0 0.00 0.00 0.00 5.01 F
1280 1307 0.638746 CGTAGGCGAGCACGTTTTAG 59.361 55.0 5.23 0.00 41.33 1.85 F
1292 1319 0.953960 CGTTTTAGGTGCCGGCTCTT 60.954 55.0 29.70 23.21 0.00 2.85 F
2815 6606 0.250252 TCTTGATGTGCGGCAAGACA 60.250 50.0 3.23 0.00 43.88 3.41 F
3074 6874 0.833949 GCTAGAGTTGGCTAGGGCTT 59.166 55.0 0.00 0.00 38.60 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2038 2202 0.107312 CTGCCTAGTGGATGCAGCTT 60.107 55.000 0.22 0.00 45.09 3.74 R
2232 2398 6.070251 AGGAAAAAGAACCACACTGGAAAAAT 60.070 34.615 0.00 0.00 40.96 1.82 R
2296 2462 3.559655 GGCTGAAAAACCCATCAACAAAC 59.440 43.478 0.00 0.00 0.00 2.93 R
2326 2492 0.934496 TGTTGACTCCGAGTTTTGCG 59.066 50.000 1.71 0.00 0.00 4.85 R
2559 6338 2.987149 ACGAACATGTTCTAGTGCGAAG 59.013 45.455 30.45 16.89 39.11 3.79 R
2641 6420 0.101399 GCATCGACGAGTGAGGATGT 59.899 55.000 3.01 0.00 38.75 3.06 R
2789 6580 0.320683 CCGCACATCAAGAGGTGTCA 60.321 55.000 15.17 0.00 44.15 3.58 R
2943 6734 1.638388 GAGCAAGCACGCATAGCACA 61.638 55.000 0.00 0.00 0.00 4.57 R
3708 8239 0.038744 AGTACTCCCTCCGTCCGAAA 59.961 55.000 0.00 0.00 0.00 3.46 R
5071 9626 0.631212 GGAGTCCCATCCACCCATTT 59.369 55.000 0.00 0.00 39.34 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.255950 GTTTTATCTCTTAAACCGTGCATCC 58.744 40.000 0.00 0.00 29.47 3.51
25 26 3.627395 ATCTCTTAAACCGTGCATCCA 57.373 42.857 0.00 0.00 0.00 3.41
26 27 3.410631 TCTCTTAAACCGTGCATCCAA 57.589 42.857 0.00 0.00 0.00 3.53
27 28 3.745799 TCTCTTAAACCGTGCATCCAAA 58.254 40.909 0.00 0.00 0.00 3.28
28 29 4.331968 TCTCTTAAACCGTGCATCCAAAT 58.668 39.130 0.00 0.00 0.00 2.32
29 30 4.394920 TCTCTTAAACCGTGCATCCAAATC 59.605 41.667 0.00 0.00 0.00 2.17
30 31 4.331968 TCTTAAACCGTGCATCCAAATCT 58.668 39.130 0.00 0.00 0.00 2.40
31 32 4.394920 TCTTAAACCGTGCATCCAAATCTC 59.605 41.667 0.00 0.00 0.00 2.75
32 33 2.198827 AACCGTGCATCCAAATCTCA 57.801 45.000 0.00 0.00 0.00 3.27
33 34 2.198827 ACCGTGCATCCAAATCTCAA 57.801 45.000 0.00 0.00 0.00 3.02
34 35 2.513753 ACCGTGCATCCAAATCTCAAA 58.486 42.857 0.00 0.00 0.00 2.69
35 36 2.228822 ACCGTGCATCCAAATCTCAAAC 59.771 45.455 0.00 0.00 0.00 2.93
36 37 2.415893 CCGTGCATCCAAATCTCAAACC 60.416 50.000 0.00 0.00 0.00 3.27
37 38 2.728846 CGTGCATCCAAATCTCAAACCG 60.729 50.000 0.00 0.00 0.00 4.44
38 39 2.228822 GTGCATCCAAATCTCAAACCGT 59.771 45.455 0.00 0.00 0.00 4.83
39 40 2.890311 TGCATCCAAATCTCAAACCGTT 59.110 40.909 0.00 0.00 0.00 4.44
40 41 3.320541 TGCATCCAAATCTCAAACCGTTT 59.679 39.130 0.00 0.00 0.00 3.60
41 42 4.202202 TGCATCCAAATCTCAAACCGTTTT 60.202 37.500 0.00 0.00 0.00 2.43
42 43 4.385748 GCATCCAAATCTCAAACCGTTTTC 59.614 41.667 0.00 0.00 0.00 2.29
43 44 5.527951 CATCCAAATCTCAAACCGTTTTCA 58.472 37.500 0.00 0.00 0.00 2.69
44 45 4.927422 TCCAAATCTCAAACCGTTTTCAC 58.073 39.130 0.00 0.00 0.00 3.18
45 46 4.048504 CCAAATCTCAAACCGTTTTCACC 58.951 43.478 0.00 0.00 0.00 4.02
46 47 4.202111 CCAAATCTCAAACCGTTTTCACCT 60.202 41.667 0.00 0.00 0.00 4.00
47 48 5.348164 CAAATCTCAAACCGTTTTCACCTT 58.652 37.500 0.00 0.00 0.00 3.50
48 49 5.592104 AATCTCAAACCGTTTTCACCTTT 57.408 34.783 0.00 0.00 0.00 3.11
49 50 4.364415 TCTCAAACCGTTTTCACCTTTG 57.636 40.909 0.00 0.00 0.00 2.77
50 51 3.129638 TCTCAAACCGTTTTCACCTTTGG 59.870 43.478 0.00 0.00 0.00 3.28
51 52 3.090037 TCAAACCGTTTTCACCTTTGGA 58.910 40.909 0.00 0.00 0.00 3.53
52 53 3.702045 TCAAACCGTTTTCACCTTTGGAT 59.298 39.130 0.00 0.00 0.00 3.41
53 54 4.160626 TCAAACCGTTTTCACCTTTGGATT 59.839 37.500 0.00 0.00 0.00 3.01
54 55 4.746535 AACCGTTTTCACCTTTGGATTT 57.253 36.364 0.00 0.00 0.00 2.17
55 56 4.316205 ACCGTTTTCACCTTTGGATTTC 57.684 40.909 0.00 0.00 0.00 2.17
56 57 3.958147 ACCGTTTTCACCTTTGGATTTCT 59.042 39.130 0.00 0.00 0.00 2.52
57 58 4.404394 ACCGTTTTCACCTTTGGATTTCTT 59.596 37.500 0.00 0.00 0.00 2.52
58 59 4.744631 CCGTTTTCACCTTTGGATTTCTTG 59.255 41.667 0.00 0.00 0.00 3.02
59 60 4.209080 CGTTTTCACCTTTGGATTTCTTGC 59.791 41.667 0.00 0.00 0.00 4.01
60 61 3.641437 TTCACCTTTGGATTTCTTGCG 57.359 42.857 0.00 0.00 0.00 4.85
61 62 2.582052 TCACCTTTGGATTTCTTGCGT 58.418 42.857 0.00 0.00 0.00 5.24
62 63 2.552315 TCACCTTTGGATTTCTTGCGTC 59.448 45.455 0.00 0.00 0.00 5.19
63 64 1.535462 ACCTTTGGATTTCTTGCGTCG 59.465 47.619 0.00 0.00 0.00 5.12
64 65 1.804151 CCTTTGGATTTCTTGCGTCGA 59.196 47.619 0.00 0.00 0.00 4.20
65 66 2.159653 CCTTTGGATTTCTTGCGTCGAG 60.160 50.000 0.00 0.00 0.00 4.04
66 67 2.448926 TTGGATTTCTTGCGTCGAGA 57.551 45.000 0.00 0.00 0.00 4.04
67 68 2.672961 TGGATTTCTTGCGTCGAGAT 57.327 45.000 0.00 0.00 0.00 2.75
68 69 2.540515 TGGATTTCTTGCGTCGAGATC 58.459 47.619 0.00 0.00 0.00 2.75
69 70 2.166459 TGGATTTCTTGCGTCGAGATCT 59.834 45.455 0.00 0.00 0.00 2.75
70 71 3.190874 GGATTTCTTGCGTCGAGATCTT 58.809 45.455 0.00 0.00 0.00 2.40
71 72 3.244111 GGATTTCTTGCGTCGAGATCTTC 59.756 47.826 0.00 0.00 0.00 2.87
72 73 3.297830 TTTCTTGCGTCGAGATCTTCA 57.702 42.857 0.00 0.00 0.00 3.02
73 74 3.297830 TTCTTGCGTCGAGATCTTCAA 57.702 42.857 0.00 0.00 0.00 2.69
74 75 3.297830 TCTTGCGTCGAGATCTTCAAA 57.702 42.857 0.00 0.00 0.00 2.69
75 76 3.649073 TCTTGCGTCGAGATCTTCAAAA 58.351 40.909 0.00 0.00 0.00 2.44
76 77 3.428870 TCTTGCGTCGAGATCTTCAAAAC 59.571 43.478 0.00 0.00 0.00 2.43
77 78 3.026630 TGCGTCGAGATCTTCAAAACT 57.973 42.857 0.00 0.00 0.00 2.66
78 79 4.168922 TGCGTCGAGATCTTCAAAACTA 57.831 40.909 0.00 0.00 0.00 2.24
79 80 4.166523 TGCGTCGAGATCTTCAAAACTAG 58.833 43.478 0.00 0.00 0.00 2.57
80 81 4.082949 TGCGTCGAGATCTTCAAAACTAGA 60.083 41.667 0.00 0.00 0.00 2.43
81 82 5.038033 GCGTCGAGATCTTCAAAACTAGAT 58.962 41.667 0.00 0.00 0.00 1.98
82 83 5.172411 GCGTCGAGATCTTCAAAACTAGATC 59.828 44.000 0.00 0.00 37.89 2.75
83 84 5.683743 CGTCGAGATCTTCAAAACTAGATCC 59.316 44.000 0.00 1.33 38.24 3.36
84 85 5.980715 GTCGAGATCTTCAAAACTAGATCCC 59.019 44.000 0.00 0.00 38.24 3.85
85 86 5.656859 TCGAGATCTTCAAAACTAGATCCCA 59.343 40.000 0.00 0.00 38.24 4.37
86 87 6.325028 TCGAGATCTTCAAAACTAGATCCCAT 59.675 38.462 0.00 0.00 38.24 4.00
87 88 6.423302 CGAGATCTTCAAAACTAGATCCCATG 59.577 42.308 0.00 0.00 38.24 3.66
88 89 7.205515 AGATCTTCAAAACTAGATCCCATGT 57.794 36.000 0.00 0.00 38.24 3.21
89 90 7.637511 AGATCTTCAAAACTAGATCCCATGTT 58.362 34.615 0.00 0.00 38.24 2.71
90 91 7.555554 AGATCTTCAAAACTAGATCCCATGTTG 59.444 37.037 0.00 0.00 38.24 3.33
91 92 6.778821 TCTTCAAAACTAGATCCCATGTTGA 58.221 36.000 0.00 0.00 0.00 3.18
92 93 7.405292 TCTTCAAAACTAGATCCCATGTTGAT 58.595 34.615 0.00 0.00 0.00 2.57
93 94 8.548025 TCTTCAAAACTAGATCCCATGTTGATA 58.452 33.333 0.00 0.00 0.00 2.15
94 95 8.737168 TTCAAAACTAGATCCCATGTTGATAG 57.263 34.615 0.00 0.00 0.00 2.08
95 96 8.089625 TCAAAACTAGATCCCATGTTGATAGA 57.910 34.615 0.00 0.00 0.00 1.98
96 97 8.717717 TCAAAACTAGATCCCATGTTGATAGAT 58.282 33.333 0.00 0.00 0.00 1.98
97 98 9.347240 CAAAACTAGATCCCATGTTGATAGATT 57.653 33.333 0.00 0.00 0.00 2.40
98 99 9.927081 AAAACTAGATCCCATGTTGATAGATTT 57.073 29.630 0.00 0.00 0.00 2.17
99 100 9.927081 AAACTAGATCCCATGTTGATAGATTTT 57.073 29.630 0.00 0.00 0.00 1.82
100 101 8.915057 ACTAGATCCCATGTTGATAGATTTTG 57.085 34.615 0.00 0.00 0.00 2.44
101 102 8.717717 ACTAGATCCCATGTTGATAGATTTTGA 58.282 33.333 0.00 0.00 0.00 2.69
102 103 7.814264 AGATCCCATGTTGATAGATTTTGAC 57.186 36.000 0.00 0.00 0.00 3.18
103 104 6.484643 AGATCCCATGTTGATAGATTTTGACG 59.515 38.462 0.00 0.00 0.00 4.35
104 105 5.739959 TCCCATGTTGATAGATTTTGACGA 58.260 37.500 0.00 0.00 0.00 4.20
105 106 6.176896 TCCCATGTTGATAGATTTTGACGAA 58.823 36.000 0.00 0.00 0.00 3.85
106 107 6.093495 TCCCATGTTGATAGATTTTGACGAAC 59.907 38.462 0.00 0.00 0.00 3.95
107 108 6.094048 CCCATGTTGATAGATTTTGACGAACT 59.906 38.462 0.00 0.00 0.00 3.01
108 109 7.362056 CCCATGTTGATAGATTTTGACGAACTT 60.362 37.037 0.00 0.00 0.00 2.66
109 110 8.023128 CCATGTTGATAGATTTTGACGAACTTT 58.977 33.333 0.00 0.00 0.00 2.66
110 111 9.398170 CATGTTGATAGATTTTGACGAACTTTT 57.602 29.630 0.00 0.00 0.00 2.27
111 112 9.965824 ATGTTGATAGATTTTGACGAACTTTTT 57.034 25.926 0.00 0.00 0.00 1.94
151 152 2.903404 AAAAACCAAACCGGGAGCA 58.097 47.368 6.32 0.00 40.22 4.26
152 153 0.462375 AAAAACCAAACCGGGAGCAC 59.538 50.000 6.32 0.00 40.22 4.40
153 154 1.730451 AAAACCAAACCGGGAGCACG 61.730 55.000 6.32 0.00 40.22 5.34
177 178 1.905637 TTTCCCTTTCCGAAAGAGGC 58.094 50.000 20.43 0.00 41.02 4.70
178 179 0.768622 TTCCCTTTCCGAAAGAGGCA 59.231 50.000 20.43 8.95 41.02 4.75
179 180 0.036306 TCCCTTTCCGAAAGAGGCAC 59.964 55.000 20.43 0.00 41.02 5.01
180 181 1.298859 CCCTTTCCGAAAGAGGCACG 61.299 60.000 20.43 4.41 41.02 5.34
181 182 1.497722 CTTTCCGAAAGAGGCACGC 59.502 57.895 14.72 0.00 41.02 5.34
182 183 1.912371 CTTTCCGAAAGAGGCACGCC 61.912 60.000 14.72 0.00 41.02 5.68
183 184 3.894547 TTCCGAAAGAGGCACGCCC 62.895 63.158 3.95 0.00 36.58 6.13
201 202 4.185413 GTGCCTCTCGCGAAATCA 57.815 55.556 11.33 2.93 42.08 2.57
202 203 1.710339 GTGCCTCTCGCGAAATCAC 59.290 57.895 11.33 12.02 42.08 3.06
203 204 1.014044 GTGCCTCTCGCGAAATCACA 61.014 55.000 11.33 2.03 42.08 3.58
204 205 0.320334 TGCCTCTCGCGAAATCACAA 60.320 50.000 11.33 0.00 42.08 3.33
205 206 0.095417 GCCTCTCGCGAAATCACAAC 59.905 55.000 11.33 0.00 0.00 3.32
206 207 0.721718 CCTCTCGCGAAATCACAACC 59.278 55.000 11.33 0.00 0.00 3.77
207 208 0.366871 CTCTCGCGAAATCACAACCG 59.633 55.000 11.33 0.00 0.00 4.44
208 209 0.319211 TCTCGCGAAATCACAACCGT 60.319 50.000 11.33 0.00 0.00 4.83
209 210 0.179250 CTCGCGAAATCACAACCGTG 60.179 55.000 11.33 0.00 45.08 4.94
210 211 1.792057 CGCGAAATCACAACCGTGC 60.792 57.895 0.00 0.00 43.28 5.34
211 212 1.442017 GCGAAATCACAACCGTGCC 60.442 57.895 0.00 0.00 43.28 5.01
212 213 1.852067 GCGAAATCACAACCGTGCCT 61.852 55.000 0.00 0.00 43.28 4.75
213 214 0.165944 CGAAATCACAACCGTGCCTC 59.834 55.000 0.00 0.00 43.28 4.70
214 215 1.523758 GAAATCACAACCGTGCCTCT 58.476 50.000 0.00 0.00 43.28 3.69
215 216 1.464997 GAAATCACAACCGTGCCTCTC 59.535 52.381 0.00 0.00 43.28 3.20
216 217 0.670546 AATCACAACCGTGCCTCTCG 60.671 55.000 0.00 0.00 43.28 4.04
217 218 1.816863 ATCACAACCGTGCCTCTCGT 61.817 55.000 0.00 0.00 43.28 4.18
218 219 2.029073 ACAACCGTGCCTCTCGTG 59.971 61.111 0.00 0.00 0.00 4.35
219 220 2.738521 CAACCGTGCCTCTCGTGG 60.739 66.667 0.00 0.00 0.00 4.94
220 221 2.915659 AACCGTGCCTCTCGTGGA 60.916 61.111 0.00 0.00 0.00 4.02
221 222 2.504274 AACCGTGCCTCTCGTGGAA 61.504 57.895 0.00 0.00 0.00 3.53
222 223 2.125912 CCGTGCCTCTCGTGGAAG 60.126 66.667 0.00 0.00 0.00 3.46
223 224 2.811317 CGTGCCTCTCGTGGAAGC 60.811 66.667 0.00 0.00 32.35 3.86
224 225 2.343758 GTGCCTCTCGTGGAAGCA 59.656 61.111 0.00 1.60 38.87 3.91
225 226 1.301716 GTGCCTCTCGTGGAAGCAA 60.302 57.895 6.14 0.00 42.24 3.91
226 227 0.884704 GTGCCTCTCGTGGAAGCAAA 60.885 55.000 6.14 0.00 42.24 3.68
227 228 0.884704 TGCCTCTCGTGGAAGCAAAC 60.885 55.000 2.93 0.00 38.32 2.93
228 229 1.578206 GCCTCTCGTGGAAGCAAACC 61.578 60.000 0.00 0.00 32.03 3.27
229 230 0.955919 CCTCTCGTGGAAGCAAACCC 60.956 60.000 0.00 0.00 0.00 4.11
230 231 1.291877 CTCTCGTGGAAGCAAACCCG 61.292 60.000 0.00 0.00 0.00 5.28
231 232 1.597027 CTCGTGGAAGCAAACCCGT 60.597 57.895 0.00 0.00 0.00 5.28
232 233 1.841663 CTCGTGGAAGCAAACCCGTG 61.842 60.000 0.00 0.00 0.00 4.94
233 234 1.890041 CGTGGAAGCAAACCCGTGA 60.890 57.895 0.00 0.00 0.00 4.35
234 235 1.652563 GTGGAAGCAAACCCGTGAC 59.347 57.895 0.00 0.00 0.00 3.67
235 236 0.818040 GTGGAAGCAAACCCGTGACT 60.818 55.000 0.00 0.00 0.00 3.41
236 237 0.534203 TGGAAGCAAACCCGTGACTC 60.534 55.000 0.00 0.00 0.00 3.36
237 238 0.250338 GGAAGCAAACCCGTGACTCT 60.250 55.000 0.00 0.00 0.00 3.24
238 239 1.149148 GAAGCAAACCCGTGACTCTC 58.851 55.000 0.00 0.00 0.00 3.20
239 240 0.600255 AAGCAAACCCGTGACTCTCG 60.600 55.000 0.00 0.00 0.00 4.04
240 241 1.300697 GCAAACCCGTGACTCTCGT 60.301 57.895 0.24 0.00 0.00 4.18
241 242 1.557443 GCAAACCCGTGACTCTCGTG 61.557 60.000 0.24 0.00 0.00 4.35
242 243 0.944311 CAAACCCGTGACTCTCGTGG 60.944 60.000 0.24 3.86 0.00 4.94
243 244 1.111116 AAACCCGTGACTCTCGTGGA 61.111 55.000 12.24 0.00 0.00 4.02
244 245 1.111116 AACCCGTGACTCTCGTGGAA 61.111 55.000 12.24 0.00 0.00 3.53
245 246 1.111116 ACCCGTGACTCTCGTGGAAA 61.111 55.000 12.24 0.00 0.00 3.13
246 247 0.388649 CCCGTGACTCTCGTGGAAAG 60.389 60.000 0.24 0.00 0.00 2.62
247 248 0.596577 CCGTGACTCTCGTGGAAAGA 59.403 55.000 0.24 0.00 0.00 2.52
248 249 1.000607 CCGTGACTCTCGTGGAAAGAA 60.001 52.381 0.24 0.00 0.00 2.52
249 250 2.545113 CCGTGACTCTCGTGGAAAGAAA 60.545 50.000 0.24 0.00 0.00 2.52
250 251 3.120792 CGTGACTCTCGTGGAAAGAAAA 58.879 45.455 0.00 0.00 0.00 2.29
251 252 3.554324 CGTGACTCTCGTGGAAAGAAAAA 59.446 43.478 0.00 0.00 0.00 1.94
288 289 2.649531 TTTCCTTTCCGAAAGAGGCA 57.350 45.000 20.43 0.00 41.02 4.75
289 290 1.892209 TTCCTTTCCGAAAGAGGCAC 58.108 50.000 20.43 0.00 41.02 5.01
290 291 0.320421 TCCTTTCCGAAAGAGGCACG 60.320 55.000 20.43 4.67 41.02 5.34
291 292 1.497722 CTTTCCGAAAGAGGCACGC 59.502 57.895 14.72 0.00 41.02 5.34
292 293 1.912371 CTTTCCGAAAGAGGCACGCC 61.912 60.000 14.72 0.00 41.02 5.68
293 294 3.894547 TTCCGAAAGAGGCACGCCC 62.895 63.158 3.95 0.00 36.58 6.13
314 315 3.425972 GTGACTCTCGCGAAAGAAAAG 57.574 47.619 17.91 6.60 0.00 2.27
315 316 3.050619 GTGACTCTCGCGAAAGAAAAGA 58.949 45.455 17.91 3.96 0.00 2.52
316 317 3.489785 GTGACTCTCGCGAAAGAAAAGAA 59.510 43.478 17.91 0.00 0.00 2.52
317 318 4.025979 GTGACTCTCGCGAAAGAAAAGAAA 60.026 41.667 17.91 0.00 0.00 2.52
318 319 4.569162 TGACTCTCGCGAAAGAAAAGAAAA 59.431 37.500 17.91 0.00 0.00 2.29
319 320 5.064198 TGACTCTCGCGAAAGAAAAGAAAAA 59.936 36.000 17.91 0.00 0.00 1.94
320 321 5.263948 ACTCTCGCGAAAGAAAAGAAAAAC 58.736 37.500 17.91 0.00 0.00 2.43
321 322 4.268522 TCTCGCGAAAGAAAAGAAAAACG 58.731 39.130 11.33 0.00 0.00 3.60
322 323 4.033129 TCTCGCGAAAGAAAAGAAAAACGA 59.967 37.500 11.33 0.00 0.00 3.85
323 324 4.649977 TCGCGAAAGAAAAGAAAAACGAA 58.350 34.783 6.20 0.00 0.00 3.85
324 325 5.087397 TCGCGAAAGAAAAGAAAAACGAAA 58.913 33.333 6.20 0.00 0.00 3.46
325 326 5.568296 TCGCGAAAGAAAAGAAAAACGAAAA 59.432 32.000 6.20 0.00 0.00 2.29
326 327 5.660983 CGCGAAAGAAAAGAAAAACGAAAAC 59.339 36.000 0.00 0.00 0.00 2.43
327 328 5.660983 GCGAAAGAAAAGAAAAACGAAAACG 59.339 36.000 0.00 0.00 0.00 3.60
328 329 5.660983 CGAAAGAAAAGAAAAACGAAAACGC 59.339 36.000 0.00 0.00 0.00 4.84
329 330 4.731915 AGAAAAGAAAAACGAAAACGCG 57.268 36.364 3.53 3.53 37.29 6.01
331 332 5.323105 AGAAAAGAAAAACGAAAACGCGTA 58.677 33.333 14.46 0.00 44.86 4.42
332 333 5.967088 AGAAAAGAAAAACGAAAACGCGTAT 59.033 32.000 14.46 4.20 44.86 3.06
333 334 6.469915 AGAAAAGAAAAACGAAAACGCGTATT 59.530 30.769 14.46 6.51 44.86 1.89
334 335 6.557593 AAAGAAAAACGAAAACGCGTATTT 57.442 29.167 14.46 15.34 44.86 1.40
335 336 6.557593 AAGAAAAACGAAAACGCGTATTTT 57.442 29.167 14.46 10.98 44.86 1.82
336 337 6.557593 AGAAAAACGAAAACGCGTATTTTT 57.442 29.167 14.46 18.90 44.86 1.94
535 537 2.967473 CTCCGTCGCGTCACACTCT 61.967 63.158 5.77 0.00 0.00 3.24
537 539 2.502080 CGTCGCGTCACACTCTCC 60.502 66.667 5.77 0.00 0.00 3.71
711 713 2.357517 GGGATAGCCGATGTGCCG 60.358 66.667 0.00 0.00 33.83 5.69
949 958 1.915769 GCCTCACCTCACCTGACCT 60.916 63.158 0.00 0.00 0.00 3.85
1146 1170 2.375345 CCATCCAACCCCGCTACCT 61.375 63.158 0.00 0.00 0.00 3.08
1215 1242 1.132640 CGCTGCGTTTGCTAGTTCC 59.867 57.895 14.93 0.00 43.34 3.62
1224 1251 3.363673 CGTTTGCTAGTTCCGGAGTTTTC 60.364 47.826 3.34 0.00 0.00 2.29
1227 1254 1.337541 GCTAGTTCCGGAGTTTTCGGT 60.338 52.381 3.34 0.00 46.82 4.69
1237 1264 1.064952 GAGTTTTCGGTGTGGTTGTGG 59.935 52.381 0.00 0.00 0.00 4.17
1238 1265 0.526739 GTTTTCGGTGTGGTTGTGGC 60.527 55.000 0.00 0.00 0.00 5.01
1245 1272 1.152777 TGTGGTTGTGGCCTTCCAG 60.153 57.895 3.32 0.00 44.48 3.86
1265 1292 2.353607 GGTCGGATCTGCGCGTAG 60.354 66.667 18.85 18.85 0.00 3.51
1278 1305 2.664436 GCGTAGGCGAGCACGTTTT 61.664 57.895 5.23 0.00 40.25 2.43
1279 1306 1.346378 GCGTAGGCGAGCACGTTTTA 61.346 55.000 5.23 0.00 40.25 1.52
1280 1307 0.638746 CGTAGGCGAGCACGTTTTAG 59.361 55.000 5.23 0.00 41.33 1.85
1292 1319 0.953960 CGTTTTAGGTGCCGGCTCTT 60.954 55.000 29.70 23.21 0.00 2.85
1298 1325 3.357079 GTGCCGGCTCTTGTGTGG 61.357 66.667 29.70 0.00 0.00 4.17
1610 1647 2.110213 GGACGTGCTGGTGTTCCA 59.890 61.111 0.00 0.00 42.05 3.53
1649 1686 2.489971 ACTGGTGGTACAATGTTCGTG 58.510 47.619 0.00 0.00 44.16 4.35
1674 1711 3.416156 GGAAGCCAGAGTTGAGAAATGT 58.584 45.455 0.00 0.00 0.00 2.71
1799 1956 1.282382 TAGGTGCCAAGGTAGAACCC 58.718 55.000 0.00 0.00 39.75 4.11
1805 1962 4.141344 GGTGCCAAGGTAGAACCCAATATA 60.141 45.833 0.00 0.00 39.75 0.86
1882 2046 5.986936 GTTCAGTTACTTGGTAAGCTGAAC 58.013 41.667 26.02 26.02 45.30 3.18
1899 2063 4.746115 GCTGAACATTTTTGTGCTTGATGA 59.254 37.500 0.00 0.00 0.00 2.92
1923 2087 7.973388 TGAATTTCTGTTTATGCCCTTAATTCG 59.027 33.333 0.00 0.00 34.09 3.34
1928 2092 7.332557 TCTGTTTATGCCCTTAATTCGAGTAA 58.667 34.615 0.00 0.00 0.00 2.24
1978 2142 5.530915 TGCATTTGTAGCGCTTATTAGGATT 59.469 36.000 18.68 0.00 33.85 3.01
2051 2215 2.818432 CTCAAAAGAAGCTGCATCCACT 59.182 45.455 1.02 0.00 0.00 4.00
2059 2223 2.591753 TGCATCCACTAGGCAGGC 59.408 61.111 0.00 0.00 40.64 4.85
2219 2385 6.827727 ACCAATACTATGCTTACCGATCTTT 58.172 36.000 0.00 0.00 0.00 2.52
2296 2462 1.877637 TCACATGGTGGTTCGTTCAG 58.122 50.000 0.00 0.00 33.87 3.02
2455 6234 5.332743 TCCCTCCATTCCATAATTATTGGC 58.667 41.667 8.49 0.00 34.06 4.52
2460 6239 4.236935 CATTCCATAATTATTGGCGTGGC 58.763 43.478 0.00 0.00 34.06 5.01
2565 6344 8.821894 ACTGCAAATTTAAATTAAAACTTCGCA 58.178 25.926 13.68 10.75 0.00 5.10
2579 6358 2.987149 ACTTCGCACTAGAACATGTTCG 59.013 45.455 28.18 19.28 43.97 3.95
2638 6417 6.677187 GCGCTAGAAATTTAACCCTAGTTTGG 60.677 42.308 0.00 0.00 37.42 3.28
2641 6420 5.318630 AGAAATTTAACCCTAGTTTGGCGA 58.681 37.500 0.00 0.00 37.42 5.54
2652 6431 1.079503 GTTTGGCGACATCCTCACTC 58.920 55.000 0.00 0.00 42.32 3.51
2659 6438 2.112475 GACATCCTCACTCGTCGATG 57.888 55.000 0.00 0.00 38.44 3.84
2681 6460 2.818274 GGTAGAACTTGGCGGCCG 60.818 66.667 24.05 24.05 0.00 6.13
2700 6479 4.988598 CTTGTGGAGCGCGTGGGT 62.989 66.667 8.43 0.00 0.00 4.51
2724 6515 2.435059 GTGCTCCTCTTGGCGGTC 60.435 66.667 0.00 0.00 0.00 4.79
2727 6518 4.821589 CTCCTCTTGGCGGTCGGC 62.822 72.222 10.01 10.01 42.51 5.54
2746 6537 2.436824 GTGCCTTCTTCTCCGCCC 60.437 66.667 0.00 0.00 0.00 6.13
2789 6580 4.148825 GCTCCTCATCGGTGGCGT 62.149 66.667 0.00 0.00 0.00 5.68
2815 6606 0.250252 TCTTGATGTGCGGCAAGACA 60.250 50.000 3.23 0.00 43.88 3.41
3074 6874 0.833949 GCTAGAGTTGGCTAGGGCTT 59.166 55.000 0.00 0.00 38.60 4.35
3150 6950 1.201647 CCCTCGGTGCCGTGTATATAG 59.798 57.143 10.60 0.00 40.74 1.31
3223 7024 2.438868 CGATATGCGGGATCTGTTCA 57.561 50.000 0.00 0.00 36.03 3.18
3265 7067 1.474077 GCATGTCGGCTGGAATTTTCT 59.526 47.619 0.00 0.00 0.00 2.52
3289 7092 3.129502 GCGGCCTTTTACGGGGTC 61.130 66.667 0.00 0.00 0.00 4.46
3532 7340 7.714377 AGATCCTCTACTGCAGTAATGATTTTG 59.286 37.037 25.95 12.68 0.00 2.44
3545 7353 9.051027 CAGTAATGATTTTGTAGCACTTAAACG 57.949 33.333 0.00 0.00 0.00 3.60
3610 8141 9.762933 AAATCAATGTTTATGTTTGTAGCAAGT 57.237 25.926 0.00 0.00 0.00 3.16
3612 8143 9.840427 ATCAATGTTTATGTTTGTAGCAAGTAC 57.160 29.630 0.00 0.00 0.00 2.73
3613 8144 9.062524 TCAATGTTTATGTTTGTAGCAAGTACT 57.937 29.630 0.00 0.00 32.19 2.73
3614 8145 9.329913 CAATGTTTATGTTTGTAGCAAGTACTC 57.670 33.333 0.00 0.00 32.19 2.59
3615 8146 7.429636 TGTTTATGTTTGTAGCAAGTACTCC 57.570 36.000 0.00 0.00 32.19 3.85
3616 8147 6.428771 TGTTTATGTTTGTAGCAAGTACTCCC 59.571 38.462 0.00 0.00 32.19 4.30
3617 8148 4.910458 ATGTTTGTAGCAAGTACTCCCT 57.090 40.909 0.00 0.00 32.19 4.20
3618 8149 4.267349 TGTTTGTAGCAAGTACTCCCTC 57.733 45.455 0.00 0.00 32.19 4.30
3619 8150 3.007614 TGTTTGTAGCAAGTACTCCCTCC 59.992 47.826 0.00 0.00 32.19 4.30
3620 8151 1.471119 TGTAGCAAGTACTCCCTCCG 58.529 55.000 0.00 0.00 32.19 4.63
3621 8152 1.272313 TGTAGCAAGTACTCCCTCCGT 60.272 52.381 0.00 0.00 32.19 4.69
3622 8153 1.404748 GTAGCAAGTACTCCCTCCGTC 59.595 57.143 0.00 0.00 0.00 4.79
3623 8154 0.971447 AGCAAGTACTCCCTCCGTCC 60.971 60.000 0.00 0.00 0.00 4.79
3624 8155 1.255667 GCAAGTACTCCCTCCGTCCA 61.256 60.000 0.00 0.00 0.00 4.02
3625 8156 1.263356 CAAGTACTCCCTCCGTCCAA 58.737 55.000 0.00 0.00 0.00 3.53
3626 8157 1.621814 CAAGTACTCCCTCCGTCCAAA 59.378 52.381 0.00 0.00 0.00 3.28
3627 8158 2.019807 AGTACTCCCTCCGTCCAAAA 57.980 50.000 0.00 0.00 0.00 2.44
3628 8159 2.332117 AGTACTCCCTCCGTCCAAAAA 58.668 47.619 0.00 0.00 0.00 1.94
3629 8160 2.910977 AGTACTCCCTCCGTCCAAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
3630 8161 4.098894 AGTACTCCCTCCGTCCAAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
3631 8162 3.345508 ACTCCCTCCGTCCAAAAATAC 57.654 47.619 0.00 0.00 0.00 1.89
3632 8163 2.910977 ACTCCCTCCGTCCAAAAATACT 59.089 45.455 0.00 0.00 0.00 2.12
3633 8164 3.329814 ACTCCCTCCGTCCAAAAATACTT 59.670 43.478 0.00 0.00 0.00 2.24
3634 8165 3.681593 TCCCTCCGTCCAAAAATACTTG 58.318 45.455 0.00 0.00 0.00 3.16
3635 8166 3.073356 TCCCTCCGTCCAAAAATACTTGT 59.927 43.478 0.00 0.00 0.00 3.16
3636 8167 3.439129 CCCTCCGTCCAAAAATACTTGTC 59.561 47.826 0.00 0.00 0.00 3.18
3637 8168 4.324267 CCTCCGTCCAAAAATACTTGTCT 58.676 43.478 0.00 0.00 0.00 3.41
3638 8169 4.760204 CCTCCGTCCAAAAATACTTGTCTT 59.240 41.667 0.00 0.00 0.00 3.01
3639 8170 5.935789 CCTCCGTCCAAAAATACTTGTCTTA 59.064 40.000 0.00 0.00 0.00 2.10
3640 8171 6.092259 CCTCCGTCCAAAAATACTTGTCTTAG 59.908 42.308 0.00 0.00 0.00 2.18
3641 8172 6.761312 TCCGTCCAAAAATACTTGTCTTAGA 58.239 36.000 0.00 0.00 0.00 2.10
3642 8173 7.218614 TCCGTCCAAAAATACTTGTCTTAGAA 58.781 34.615 0.00 0.00 0.00 2.10
3643 8174 7.716123 TCCGTCCAAAAATACTTGTCTTAGAAA 59.284 33.333 0.00 0.00 0.00 2.52
3644 8175 8.512138 CCGTCCAAAAATACTTGTCTTAGAAAT 58.488 33.333 0.00 0.00 0.00 2.17
3645 8176 9.329913 CGTCCAAAAATACTTGTCTTAGAAATG 57.670 33.333 0.00 0.00 0.00 2.32
3646 8177 9.626045 GTCCAAAAATACTTGTCTTAGAAATGG 57.374 33.333 0.00 0.00 0.00 3.16
3647 8178 9.581289 TCCAAAAATACTTGTCTTAGAAATGGA 57.419 29.630 0.00 0.00 0.00 3.41
3655 8186 8.040716 ACTTGTCTTAGAAATGGATAAAACGG 57.959 34.615 0.00 0.00 0.00 4.44
3656 8187 7.881232 ACTTGTCTTAGAAATGGATAAAACGGA 59.119 33.333 0.00 0.00 0.00 4.69
3657 8188 8.801882 TTGTCTTAGAAATGGATAAAACGGAT 57.198 30.769 0.00 0.00 0.00 4.18
3658 8189 8.208718 TGTCTTAGAAATGGATAAAACGGATG 57.791 34.615 0.00 0.00 0.00 3.51
3659 8190 7.827236 TGTCTTAGAAATGGATAAAACGGATGT 59.173 33.333 0.00 0.00 0.00 3.06
3660 8191 9.321562 GTCTTAGAAATGGATAAAACGGATGTA 57.678 33.333 0.00 0.00 0.00 2.29
3701 8232 8.644374 AGTCTAGATACATCCATTTCTAGGAC 57.356 38.462 0.00 0.00 38.67 3.85
3702 8233 8.228206 AGTCTAGATACATCCATTTCTAGGACA 58.772 37.037 0.00 0.00 38.67 4.02
3703 8234 8.861086 GTCTAGATACATCCATTTCTAGGACAA 58.139 37.037 0.00 0.00 38.67 3.18
3704 8235 9.083422 TCTAGATACATCCATTTCTAGGACAAG 57.917 37.037 6.10 0.00 38.67 3.16
3705 8236 7.682787 AGATACATCCATTTCTAGGACAAGT 57.317 36.000 0.00 0.00 38.13 3.16
3706 8237 8.783660 AGATACATCCATTTCTAGGACAAGTA 57.216 34.615 0.00 0.00 38.13 2.24
3707 8238 9.386122 AGATACATCCATTTCTAGGACAAGTAT 57.614 33.333 0.00 0.00 38.13 2.12
3711 8242 9.178758 ACATCCATTTCTAGGACAAGTATTTTC 57.821 33.333 0.00 0.00 38.13 2.29
3712 8243 7.843490 TCCATTTCTAGGACAAGTATTTTCG 57.157 36.000 0.00 0.00 0.00 3.46
3713 8244 6.821665 TCCATTTCTAGGACAAGTATTTTCGG 59.178 38.462 0.00 0.00 0.00 4.30
3714 8245 6.821665 CCATTTCTAGGACAAGTATTTTCGGA 59.178 38.462 0.00 0.00 0.00 4.55
3715 8246 7.201617 CCATTTCTAGGACAAGTATTTTCGGAC 60.202 40.741 0.00 0.00 0.00 4.79
3716 8247 4.990257 TCTAGGACAAGTATTTTCGGACG 58.010 43.478 0.00 0.00 0.00 4.79
3717 8248 2.968675 AGGACAAGTATTTTCGGACGG 58.031 47.619 0.00 0.00 0.00 4.79
3718 8249 2.564062 AGGACAAGTATTTTCGGACGGA 59.436 45.455 0.00 0.00 0.00 4.69
3719 8250 2.928116 GGACAAGTATTTTCGGACGGAG 59.072 50.000 0.00 0.00 0.00 4.63
3720 8251 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
3721 8252 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
3722 8253 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
3723 8254 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
3724 8255 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
3725 8256 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
3726 8257 0.890683 TTTTCGGACGGAGGGAGTAC 59.109 55.000 0.00 0.00 0.00 2.73
3727 8258 0.038744 TTTCGGACGGAGGGAGTACT 59.961 55.000 0.00 0.00 0.00 2.73
3728 8259 0.038744 TTCGGACGGAGGGAGTACTT 59.961 55.000 0.00 0.00 0.00 2.24
3734 8265 4.439968 GGACGGAGGGAGTACTTATTTTG 58.560 47.826 0.00 0.00 0.00 2.44
3870 8401 8.997323 TGGTTTATAAAGAAAATGCCATTTGTG 58.003 29.630 2.91 0.00 31.77 3.33
3943 8474 9.645059 CAGGTTATTCTTCGTATCATATGTGAT 57.355 33.333 10.05 10.05 46.54 3.06
4078 8609 7.383300 GCTTACAAATGCTCTTCAGACATTTTT 59.617 33.333 11.51 9.57 40.94 1.94
4096 8627 8.803397 ACATTTTTCTAGTGGTTAATACTCCC 57.197 34.615 0.00 0.00 0.00 4.30
4129 8660 7.973388 TGGCTTGAATTACATATAAGTTTGCAC 59.027 33.333 0.00 0.00 0.00 4.57
4152 8683 7.290842 CACACTTAGTAAATAGCACAACACAG 58.709 38.462 0.00 0.00 0.00 3.66
4159 8690 0.667993 TAGCACAACACAGCTTTGCC 59.332 50.000 0.00 0.00 42.05 4.52
4160 8691 1.039233 AGCACAACACAGCTTTGCCT 61.039 50.000 0.00 0.00 38.01 4.75
4161 8692 0.179103 GCACAACACAGCTTTGCCTT 60.179 50.000 0.00 0.00 0.00 4.35
4162 8693 1.740043 GCACAACACAGCTTTGCCTTT 60.740 47.619 0.00 0.00 0.00 3.11
4163 8694 2.620242 CACAACACAGCTTTGCCTTTT 58.380 42.857 0.00 0.00 0.00 2.27
4164 8695 3.779759 CACAACACAGCTTTGCCTTTTA 58.220 40.909 0.00 0.00 0.00 1.52
4165 8696 3.798337 CACAACACAGCTTTGCCTTTTAG 59.202 43.478 0.00 0.00 0.00 1.85
4166 8697 3.181476 ACAACACAGCTTTGCCTTTTAGG 60.181 43.478 0.00 0.00 38.80 2.69
4222 8753 6.863275 AGTGGTTTGTCCTTTTTCTAAGTTG 58.137 36.000 0.00 0.00 37.07 3.16
4252 8783 9.224267 CCCCATTTTAACTATGTCATAGATCAG 57.776 37.037 23.84 2.65 36.68 2.90
4296 8844 2.846193 TCTGTTTCACAGCAGGGTTAC 58.154 47.619 0.00 0.00 45.54 2.50
4297 8845 2.171659 TCTGTTTCACAGCAGGGTTACA 59.828 45.455 0.00 0.00 45.54 2.41
4305 8853 3.068024 CACAGCAGGGTTACATTGTGTTT 59.932 43.478 0.00 0.00 33.21 2.83
4366 8914 5.059161 ACTGCGCATGATGACTTATTACAT 58.941 37.500 12.24 0.00 0.00 2.29
4537 9091 8.673711 GGTTATAAGCAATGTGTTATTGAGACA 58.326 33.333 9.77 0.00 35.81 3.41
4543 9097 3.134574 TGTGTTATTGAGACACCCCAC 57.865 47.619 5.08 0.00 45.19 4.61
4833 9387 6.668541 GCTGTGAGCTGATAATGAAACTAA 57.331 37.500 0.00 0.00 38.45 2.24
4921 9475 1.133167 TCGCTAGATCCCATCCCAAGA 60.133 52.381 0.00 0.00 0.00 3.02
4995 9550 4.530553 TCATCAAAGCAAGGGTGAGTAGTA 59.469 41.667 0.00 0.00 0.00 1.82
4999 9554 3.963428 AGCAAGGGTGAGTAGTAAGTG 57.037 47.619 0.00 0.00 0.00 3.16
5071 9626 2.046023 CCCATCAAGCAGGTCGCA 60.046 61.111 0.00 0.00 46.13 5.10
5199 9754 0.880278 CGTACCGATGGCCTGGAATG 60.880 60.000 15.00 1.84 0.00 2.67
5212 9767 2.352651 CCTGGAATGCTGTTATGTGACG 59.647 50.000 0.00 0.00 0.00 4.35
5380 9937 3.351740 TGCTGACTGGTTTCTTTGTGAA 58.648 40.909 0.00 0.00 0.00 3.18
5421 9978 3.141083 TCTGCTGTGATATACTCCCTCCT 59.859 47.826 0.00 0.00 0.00 3.69
5451 10008 6.780706 AATAAGTGTCGTGGTGAACTAAAG 57.219 37.500 0.00 0.00 0.00 1.85
5455 10012 1.798813 GTCGTGGTGAACTAAAGCCAG 59.201 52.381 0.00 0.00 0.00 4.85
5460 10017 2.152016 GGTGAACTAAAGCCAGGACAC 58.848 52.381 0.00 0.00 0.00 3.67
5466 10023 2.300437 ACTAAAGCCAGGACACTGTCTC 59.700 50.000 9.08 0.00 43.36 3.36
5467 10024 1.428869 AAAGCCAGGACACTGTCTCT 58.571 50.000 9.08 2.26 43.36 3.10
5468 10025 1.428869 AAGCCAGGACACTGTCTCTT 58.571 50.000 9.08 5.29 43.36 2.85
5469 10026 1.428869 AGCCAGGACACTGTCTCTTT 58.571 50.000 9.08 0.00 43.36 2.52
5470 10027 1.071385 AGCCAGGACACTGTCTCTTTG 59.929 52.381 9.08 3.60 43.36 2.77
5471 10028 1.202698 GCCAGGACACTGTCTCTTTGT 60.203 52.381 9.08 0.00 43.36 2.83
5472 10029 2.746472 GCCAGGACACTGTCTCTTTGTT 60.746 50.000 9.08 0.00 43.36 2.83
5473 10030 3.545703 CCAGGACACTGTCTCTTTGTTT 58.454 45.455 9.08 0.00 43.36 2.83
5474 10031 3.561725 CCAGGACACTGTCTCTTTGTTTC 59.438 47.826 9.08 0.00 43.36 2.78
5475 10032 4.191544 CAGGACACTGTCTCTTTGTTTCA 58.808 43.478 9.08 0.00 39.92 2.69
5476 10033 4.818546 CAGGACACTGTCTCTTTGTTTCAT 59.181 41.667 9.08 0.00 39.92 2.57
5477 10034 4.818546 AGGACACTGTCTCTTTGTTTCATG 59.181 41.667 9.08 0.00 32.47 3.07
5478 10035 4.023707 GGACACTGTCTCTTTGTTTCATGG 60.024 45.833 9.08 0.00 32.47 3.66
5479 10036 4.526970 ACACTGTCTCTTTGTTTCATGGT 58.473 39.130 0.00 0.00 0.00 3.55
5480 10037 4.576463 ACACTGTCTCTTTGTTTCATGGTC 59.424 41.667 0.00 0.00 0.00 4.02
5481 10038 4.818546 CACTGTCTCTTTGTTTCATGGTCT 59.181 41.667 0.00 0.00 0.00 3.85
5482 10039 4.818546 ACTGTCTCTTTGTTTCATGGTCTG 59.181 41.667 0.00 0.00 0.00 3.51
5483 10040 3.565482 TGTCTCTTTGTTTCATGGTCTGC 59.435 43.478 0.00 0.00 0.00 4.26
5484 10041 3.817647 GTCTCTTTGTTTCATGGTCTGCT 59.182 43.478 0.00 0.00 0.00 4.24
5485 10042 3.817084 TCTCTTTGTTTCATGGTCTGCTG 59.183 43.478 0.00 0.00 0.00 4.41
5486 10043 3.554934 TCTTTGTTTCATGGTCTGCTGT 58.445 40.909 0.00 0.00 0.00 4.40
5487 10044 3.316029 TCTTTGTTTCATGGTCTGCTGTG 59.684 43.478 0.00 0.00 0.00 3.66
5488 10045 2.636647 TGTTTCATGGTCTGCTGTGA 57.363 45.000 0.00 0.00 0.00 3.58
5489 10046 2.221169 TGTTTCATGGTCTGCTGTGAC 58.779 47.619 0.00 0.00 36.31 3.67
5490 10047 2.221169 GTTTCATGGTCTGCTGTGACA 58.779 47.619 0.00 0.00 38.61 3.58
5491 10048 1.882912 TTCATGGTCTGCTGTGACAC 58.117 50.000 0.00 0.00 38.61 3.67
5492 10049 0.758123 TCATGGTCTGCTGTGACACA 59.242 50.000 8.26 8.26 38.61 3.72
5493 10050 0.870393 CATGGTCTGCTGTGACACAC 59.130 55.000 3.56 2.84 38.61 3.82
5494 10051 0.761187 ATGGTCTGCTGTGACACACT 59.239 50.000 3.56 0.00 38.61 3.55
5495 10052 0.104855 TGGTCTGCTGTGACACACTC 59.895 55.000 3.56 0.12 38.61 3.51
5496 10053 0.601311 GGTCTGCTGTGACACACTCC 60.601 60.000 3.56 0.00 38.61 3.85
5497 10054 0.601311 GTCTGCTGTGACACACTCCC 60.601 60.000 3.56 0.00 36.97 4.30
5498 10055 0.760567 TCTGCTGTGACACACTCCCT 60.761 55.000 3.56 0.00 35.11 4.20
5499 10056 0.320247 CTGCTGTGACACACTCCCTC 60.320 60.000 3.56 0.00 35.11 4.30
5516 10364 3.317149 TCCCTCGTCCATAATAAGTGTCG 59.683 47.826 0.00 0.00 0.00 4.35
5530 10378 4.870221 AAGTGTCGTGGTGAACTAAAAC 57.130 40.909 0.00 0.00 0.00 2.43
5538 10386 2.937799 TGGTGAACTAAAACCACGACAC 59.062 45.455 0.00 0.00 41.56 3.67
5575 10423 3.009473 AGGGAGCAGTAAAAGAGCATCAA 59.991 43.478 0.00 0.00 37.82 2.57
5596 10444 0.604578 GCTGCTTCATCCTTTTGGCA 59.395 50.000 0.00 0.00 40.12 4.92
5597 10445 1.670967 GCTGCTTCATCCTTTTGGCAC 60.671 52.381 0.00 0.00 40.12 5.01
5601 10449 2.922335 GCTTCATCCTTTTGGCACGTTC 60.922 50.000 0.00 0.00 40.12 3.95
5603 10451 1.879380 TCATCCTTTTGGCACGTTCTG 59.121 47.619 0.00 0.00 40.12 3.02
5617 10465 2.549754 ACGTTCTGCTGATCCAGTTTTG 59.450 45.455 0.00 0.00 33.43 2.44
5620 10468 3.228188 TCTGCTGATCCAGTTTTGGTT 57.772 42.857 0.00 0.00 45.26 3.67
5623 10471 3.030291 TGCTGATCCAGTTTTGGTTTGT 58.970 40.909 0.00 0.00 45.26 2.83
5624 10472 3.450457 TGCTGATCCAGTTTTGGTTTGTT 59.550 39.130 0.00 0.00 45.26 2.83
5637 10485 3.354467 TGGTTTGTTGTTCTTTACCGGT 58.646 40.909 13.98 13.98 0.00 5.28
5642 10490 5.927954 TTGTTGTTCTTTACCGGTGATAC 57.072 39.130 19.93 8.50 0.00 2.24
5683 10531 7.074653 AGTATTTTGGAGTGTGGAGTTCTTA 57.925 36.000 0.00 0.00 0.00 2.10
5686 10534 6.877611 TTTTGGAGTGTGGAGTTCTTAATC 57.122 37.500 0.00 0.00 0.00 1.75
5694 10542 7.324178 AGTGTGGAGTTCTTAATCAGTGATAC 58.676 38.462 5.94 0.19 0.00 2.24
5879 11668 2.233922 AGTGACAGGTCCATTTAGGTCG 59.766 50.000 0.00 0.00 39.02 4.79
5888 11677 5.823045 AGGTCCATTTAGGTCGATTGAAATC 59.177 40.000 0.00 0.00 39.02 2.17
5927 11719 1.000506 TCTTCCTTCGACCAAGTTCGG 59.999 52.381 0.00 0.00 39.58 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.128117 TGGATGCACGGTTTAAGAGATAAAAC 60.128 38.462 0.00 0.00 37.75 2.43
1 2 5.941058 TGGATGCACGGTTTAAGAGATAAAA 59.059 36.000 0.00 0.00 35.33 1.52
2 3 5.492895 TGGATGCACGGTTTAAGAGATAAA 58.507 37.500 0.00 0.00 0.00 1.40
3 4 5.092554 TGGATGCACGGTTTAAGAGATAA 57.907 39.130 0.00 0.00 0.00 1.75
4 5 4.746535 TGGATGCACGGTTTAAGAGATA 57.253 40.909 0.00 0.00 0.00 1.98
5 6 3.627395 TGGATGCACGGTTTAAGAGAT 57.373 42.857 0.00 0.00 0.00 2.75
6 7 3.410631 TTGGATGCACGGTTTAAGAGA 57.589 42.857 0.00 0.00 0.00 3.10
7 8 4.396166 AGATTTGGATGCACGGTTTAAGAG 59.604 41.667 0.00 0.00 0.00 2.85
8 9 4.331968 AGATTTGGATGCACGGTTTAAGA 58.668 39.130 0.00 0.00 0.00 2.10
9 10 4.155826 TGAGATTTGGATGCACGGTTTAAG 59.844 41.667 0.00 0.00 0.00 1.85
10 11 4.075682 TGAGATTTGGATGCACGGTTTAA 58.924 39.130 0.00 0.00 0.00 1.52
11 12 3.680490 TGAGATTTGGATGCACGGTTTA 58.320 40.909 0.00 0.00 0.00 2.01
12 13 2.513753 TGAGATTTGGATGCACGGTTT 58.486 42.857 0.00 0.00 0.00 3.27
13 14 2.198827 TGAGATTTGGATGCACGGTT 57.801 45.000 0.00 0.00 0.00 4.44
14 15 2.198827 TTGAGATTTGGATGCACGGT 57.801 45.000 0.00 0.00 0.00 4.83
15 16 2.415893 GGTTTGAGATTTGGATGCACGG 60.416 50.000 0.00 0.00 0.00 4.94
16 17 2.728846 CGGTTTGAGATTTGGATGCACG 60.729 50.000 0.00 0.00 0.00 5.34
17 18 2.228822 ACGGTTTGAGATTTGGATGCAC 59.771 45.455 0.00 0.00 0.00 4.57
18 19 2.513753 ACGGTTTGAGATTTGGATGCA 58.486 42.857 0.00 0.00 0.00 3.96
19 20 3.575965 AACGGTTTGAGATTTGGATGC 57.424 42.857 0.00 0.00 0.00 3.91
20 21 5.402270 GTGAAAACGGTTTGAGATTTGGATG 59.598 40.000 1.45 0.00 0.00 3.51
21 22 5.508994 GGTGAAAACGGTTTGAGATTTGGAT 60.509 40.000 1.45 0.00 0.00 3.41
22 23 4.202070 GGTGAAAACGGTTTGAGATTTGGA 60.202 41.667 1.45 0.00 0.00 3.53
23 24 4.048504 GGTGAAAACGGTTTGAGATTTGG 58.951 43.478 1.45 0.00 0.00 3.28
24 25 4.932146 AGGTGAAAACGGTTTGAGATTTG 58.068 39.130 1.45 0.00 0.00 2.32
25 26 5.592104 AAGGTGAAAACGGTTTGAGATTT 57.408 34.783 1.45 0.00 0.00 2.17
26 27 5.348164 CAAAGGTGAAAACGGTTTGAGATT 58.652 37.500 1.45 0.00 31.10 2.40
27 28 4.202111 CCAAAGGTGAAAACGGTTTGAGAT 60.202 41.667 1.45 0.00 31.10 2.75
28 29 3.129638 CCAAAGGTGAAAACGGTTTGAGA 59.870 43.478 1.45 0.00 31.10 3.27
29 30 3.129638 TCCAAAGGTGAAAACGGTTTGAG 59.870 43.478 1.45 0.00 31.10 3.02
30 31 3.090037 TCCAAAGGTGAAAACGGTTTGA 58.910 40.909 1.45 0.00 31.10 2.69
31 32 3.512033 TCCAAAGGTGAAAACGGTTTG 57.488 42.857 1.45 0.00 0.00 2.93
32 33 4.746535 AATCCAAAGGTGAAAACGGTTT 57.253 36.364 0.00 0.00 0.00 3.27
33 34 4.404394 AGAAATCCAAAGGTGAAAACGGTT 59.596 37.500 0.00 0.00 0.00 4.44
34 35 3.958147 AGAAATCCAAAGGTGAAAACGGT 59.042 39.130 0.00 0.00 0.00 4.83
35 36 4.584327 AGAAATCCAAAGGTGAAAACGG 57.416 40.909 0.00 0.00 0.00 4.44
36 37 4.209080 GCAAGAAATCCAAAGGTGAAAACG 59.791 41.667 0.00 0.00 0.00 3.60
37 38 4.209080 CGCAAGAAATCCAAAGGTGAAAAC 59.791 41.667 0.00 0.00 43.02 2.43
38 39 4.142049 ACGCAAGAAATCCAAAGGTGAAAA 60.142 37.500 0.00 0.00 43.62 2.29
39 40 3.383185 ACGCAAGAAATCCAAAGGTGAAA 59.617 39.130 0.00 0.00 43.62 2.69
40 41 2.955660 ACGCAAGAAATCCAAAGGTGAA 59.044 40.909 0.00 0.00 43.62 3.18
41 42 2.552315 GACGCAAGAAATCCAAAGGTGA 59.448 45.455 0.00 0.00 43.62 4.02
42 43 2.665519 CGACGCAAGAAATCCAAAGGTG 60.666 50.000 0.00 0.00 43.62 4.00
43 44 1.535462 CGACGCAAGAAATCCAAAGGT 59.465 47.619 0.00 0.00 43.62 3.50
44 45 1.804151 TCGACGCAAGAAATCCAAAGG 59.196 47.619 0.00 0.00 43.62 3.11
45 46 2.736721 TCTCGACGCAAGAAATCCAAAG 59.263 45.455 0.00 0.00 43.62 2.77
46 47 2.761559 TCTCGACGCAAGAAATCCAAA 58.238 42.857 0.00 0.00 43.62 3.28
47 48 2.448926 TCTCGACGCAAGAAATCCAA 57.551 45.000 0.00 0.00 43.62 3.53
48 49 2.166459 AGATCTCGACGCAAGAAATCCA 59.834 45.455 0.00 0.00 43.62 3.41
49 50 2.815478 AGATCTCGACGCAAGAAATCC 58.185 47.619 0.00 0.00 43.62 3.01
50 51 3.859961 TGAAGATCTCGACGCAAGAAATC 59.140 43.478 0.00 0.00 43.62 2.17
51 52 3.849911 TGAAGATCTCGACGCAAGAAAT 58.150 40.909 0.00 0.00 43.62 2.17
52 53 3.297830 TGAAGATCTCGACGCAAGAAA 57.702 42.857 0.00 0.00 43.62 2.52
53 54 3.297830 TTGAAGATCTCGACGCAAGAA 57.702 42.857 0.00 0.00 43.62 2.52
54 55 3.297830 TTTGAAGATCTCGACGCAAGA 57.702 42.857 0.00 0.00 43.62 3.02
56 57 3.390135 AGTTTTGAAGATCTCGACGCAA 58.610 40.909 0.00 0.00 0.00 4.85
57 58 3.026630 AGTTTTGAAGATCTCGACGCA 57.973 42.857 0.00 0.00 0.00 5.24
58 59 4.413087 TCTAGTTTTGAAGATCTCGACGC 58.587 43.478 0.00 0.00 0.00 5.19
59 60 5.683743 GGATCTAGTTTTGAAGATCTCGACG 59.316 44.000 11.05 0.00 37.77 5.12
60 61 5.980715 GGGATCTAGTTTTGAAGATCTCGAC 59.019 44.000 11.05 0.00 37.77 4.20
61 62 5.656859 TGGGATCTAGTTTTGAAGATCTCGA 59.343 40.000 11.05 0.00 40.21 4.04
62 63 5.907207 TGGGATCTAGTTTTGAAGATCTCG 58.093 41.667 11.05 0.00 40.21 4.04
63 64 7.278875 ACATGGGATCTAGTTTTGAAGATCTC 58.721 38.462 11.05 8.38 38.41 2.75
64 65 7.205515 ACATGGGATCTAGTTTTGAAGATCT 57.794 36.000 11.05 0.00 37.77 2.75
65 66 7.554118 TCAACATGGGATCTAGTTTTGAAGATC 59.446 37.037 0.00 4.15 37.15 2.75
66 67 7.405292 TCAACATGGGATCTAGTTTTGAAGAT 58.595 34.615 0.00 0.00 0.00 2.40
67 68 6.778821 TCAACATGGGATCTAGTTTTGAAGA 58.221 36.000 0.00 0.00 0.00 2.87
68 69 7.636150 ATCAACATGGGATCTAGTTTTGAAG 57.364 36.000 0.00 0.00 0.00 3.02
69 70 8.548025 TCTATCAACATGGGATCTAGTTTTGAA 58.452 33.333 5.52 0.00 0.00 2.69
70 71 8.089625 TCTATCAACATGGGATCTAGTTTTGA 57.910 34.615 5.52 0.00 0.00 2.69
71 72 8.915057 ATCTATCAACATGGGATCTAGTTTTG 57.085 34.615 5.52 0.00 0.00 2.44
72 73 9.927081 AAATCTATCAACATGGGATCTAGTTTT 57.073 29.630 5.52 4.80 0.00 2.43
73 74 9.927081 AAAATCTATCAACATGGGATCTAGTTT 57.073 29.630 5.52 5.16 0.00 2.66
74 75 9.347240 CAAAATCTATCAACATGGGATCTAGTT 57.653 33.333 5.52 0.16 0.00 2.24
75 76 8.717717 TCAAAATCTATCAACATGGGATCTAGT 58.282 33.333 5.52 0.00 0.00 2.57
76 77 8.997323 GTCAAAATCTATCAACATGGGATCTAG 58.003 37.037 5.52 0.62 0.00 2.43
77 78 7.657354 CGTCAAAATCTATCAACATGGGATCTA 59.343 37.037 5.52 0.00 0.00 1.98
78 79 6.484643 CGTCAAAATCTATCAACATGGGATCT 59.515 38.462 5.52 0.00 0.00 2.75
79 80 6.483307 TCGTCAAAATCTATCAACATGGGATC 59.517 38.462 5.52 0.00 0.00 3.36
80 81 6.356556 TCGTCAAAATCTATCAACATGGGAT 58.643 36.000 0.00 2.37 0.00 3.85
81 82 5.739959 TCGTCAAAATCTATCAACATGGGA 58.260 37.500 0.00 0.00 0.00 4.37
82 83 6.094048 AGTTCGTCAAAATCTATCAACATGGG 59.906 38.462 0.00 0.00 0.00 4.00
83 84 7.076842 AGTTCGTCAAAATCTATCAACATGG 57.923 36.000 0.00 0.00 0.00 3.66
84 85 8.955061 AAAGTTCGTCAAAATCTATCAACATG 57.045 30.769 0.00 0.00 0.00 3.21
85 86 9.965824 AAAAAGTTCGTCAAAATCTATCAACAT 57.034 25.926 0.00 0.00 0.00 2.71
133 134 0.462375 GTGCTCCCGGTTTGGTTTTT 59.538 50.000 0.00 0.00 35.15 1.94
134 135 1.730451 CGTGCTCCCGGTTTGGTTTT 61.730 55.000 0.00 0.00 35.15 2.43
135 136 2.190841 CGTGCTCCCGGTTTGGTTT 61.191 57.895 0.00 0.00 35.15 3.27
136 137 2.593436 CGTGCTCCCGGTTTGGTT 60.593 61.111 0.00 0.00 35.15 3.67
137 138 4.636435 CCGTGCTCCCGGTTTGGT 62.636 66.667 0.00 0.00 43.07 3.67
156 157 2.626266 GCCTCTTTCGGAAAGGGAAAAA 59.374 45.455 27.71 9.07 41.66 1.94
157 158 2.235891 GCCTCTTTCGGAAAGGGAAAA 58.764 47.619 27.71 9.72 41.66 2.29
158 159 1.144093 TGCCTCTTTCGGAAAGGGAAA 59.856 47.619 27.71 14.52 41.66 3.13
159 160 0.768622 TGCCTCTTTCGGAAAGGGAA 59.231 50.000 27.71 19.29 41.66 3.97
160 161 0.036306 GTGCCTCTTTCGGAAAGGGA 59.964 55.000 27.71 14.21 41.66 4.20
161 162 1.298859 CGTGCCTCTTTCGGAAAGGG 61.299 60.000 25.66 23.41 38.75 3.95
162 163 1.912371 GCGTGCCTCTTTCGGAAAGG 61.912 60.000 25.66 15.57 39.01 3.11
163 164 1.497722 GCGTGCCTCTTTCGGAAAG 59.502 57.895 21.64 21.64 39.88 2.62
164 165 1.964373 GGCGTGCCTCTTTCGGAAA 60.964 57.895 2.98 2.78 0.00 3.13
165 166 2.358247 GGCGTGCCTCTTTCGGAA 60.358 61.111 2.98 0.00 0.00 4.30
166 167 4.388499 GGGCGTGCCTCTTTCGGA 62.388 66.667 11.25 0.00 36.10 4.55
169 170 3.423154 CACGGGCGTGCCTCTTTC 61.423 66.667 11.25 0.00 39.39 2.62
181 182 4.735132 TTTCGCGAGAGGCACGGG 62.735 66.667 9.59 0.00 43.84 5.28
182 183 2.509336 ATTTCGCGAGAGGCACGG 60.509 61.111 9.59 0.00 43.84 4.94
183 184 1.805539 TGATTTCGCGAGAGGCACG 60.806 57.895 9.59 0.00 43.84 5.34
184 185 1.014044 TGTGATTTCGCGAGAGGCAC 61.014 55.000 21.07 21.07 43.84 5.01
185 186 0.320334 TTGTGATTTCGCGAGAGGCA 60.320 50.000 9.59 4.82 43.84 4.75
186 187 0.095417 GTTGTGATTTCGCGAGAGGC 59.905 55.000 9.59 1.86 43.69 4.70
187 188 0.721718 GGTTGTGATTTCGCGAGAGG 59.278 55.000 9.59 0.00 43.69 3.69
188 189 0.366871 CGGTTGTGATTTCGCGAGAG 59.633 55.000 9.59 0.00 43.69 3.20
189 190 0.319211 ACGGTTGTGATTTCGCGAGA 60.319 50.000 9.59 4.97 39.20 4.04
190 191 2.150424 ACGGTTGTGATTTCGCGAG 58.850 52.632 9.59 0.00 0.00 5.03
191 192 4.347096 ACGGTTGTGATTTCGCGA 57.653 50.000 3.71 3.71 0.00 5.87
201 202 2.029073 CACGAGAGGCACGGTTGT 59.971 61.111 0.00 0.00 34.93 3.32
202 203 2.709125 TTCCACGAGAGGCACGGTTG 62.709 60.000 0.00 0.00 34.93 3.77
203 204 2.436087 CTTCCACGAGAGGCACGGTT 62.436 60.000 0.00 0.00 34.93 4.44
204 205 2.915659 TTCCACGAGAGGCACGGT 60.916 61.111 0.00 0.00 34.93 4.83
205 206 2.125912 CTTCCACGAGAGGCACGG 60.126 66.667 0.00 0.00 34.93 4.94
206 207 2.811317 GCTTCCACGAGAGGCACG 60.811 66.667 8.88 0.00 46.54 5.34
210 211 0.955919 GGGTTTGCTTCCACGAGAGG 60.956 60.000 0.00 0.00 0.00 3.69
211 212 1.291877 CGGGTTTGCTTCCACGAGAG 61.292 60.000 0.00 0.00 0.00 3.20
212 213 1.301401 CGGGTTTGCTTCCACGAGA 60.301 57.895 0.00 0.00 0.00 4.04
213 214 1.597027 ACGGGTTTGCTTCCACGAG 60.597 57.895 0.00 0.00 0.00 4.18
214 215 1.890041 CACGGGTTTGCTTCCACGA 60.890 57.895 0.00 0.00 0.00 4.35
215 216 1.890041 TCACGGGTTTGCTTCCACG 60.890 57.895 0.00 0.00 0.00 4.94
216 217 0.818040 AGTCACGGGTTTGCTTCCAC 60.818 55.000 0.00 0.00 0.00 4.02
217 218 0.534203 GAGTCACGGGTTTGCTTCCA 60.534 55.000 0.00 0.00 0.00 3.53
218 219 0.250338 AGAGTCACGGGTTTGCTTCC 60.250 55.000 0.00 0.00 0.00 3.46
219 220 1.149148 GAGAGTCACGGGTTTGCTTC 58.851 55.000 0.00 0.00 0.00 3.86
220 221 0.600255 CGAGAGTCACGGGTTTGCTT 60.600 55.000 1.62 0.00 0.00 3.91
221 222 1.006102 CGAGAGTCACGGGTTTGCT 60.006 57.895 1.62 0.00 0.00 3.91
222 223 1.300697 ACGAGAGTCACGGGTTTGC 60.301 57.895 14.49 0.00 44.19 3.68
267 268 3.067601 GTGCCTCTTTCGGAAAGGAAAAA 59.932 43.478 25.66 9.11 39.01 1.94
268 269 2.621526 GTGCCTCTTTCGGAAAGGAAAA 59.378 45.455 25.66 9.44 39.01 2.29
269 270 2.227194 GTGCCTCTTTCGGAAAGGAAA 58.773 47.619 25.66 9.75 39.01 3.13
270 271 1.876416 CGTGCCTCTTTCGGAAAGGAA 60.876 52.381 25.66 7.75 39.01 3.36
271 272 0.320421 CGTGCCTCTTTCGGAAAGGA 60.320 55.000 25.66 14.00 39.01 3.36
272 273 1.912371 GCGTGCCTCTTTCGGAAAGG 61.912 60.000 25.66 15.57 39.01 3.11
273 274 1.497722 GCGTGCCTCTTTCGGAAAG 59.502 57.895 21.64 21.64 39.88 2.62
274 275 1.964373 GGCGTGCCTCTTTCGGAAA 60.964 57.895 2.98 2.78 0.00 3.13
275 276 2.358247 GGCGTGCCTCTTTCGGAA 60.358 61.111 2.98 0.00 0.00 4.30
276 277 4.388499 GGGCGTGCCTCTTTCGGA 62.388 66.667 11.25 0.00 36.10 4.55
279 280 3.423154 CACGGGCGTGCCTCTTTC 61.423 66.667 11.25 0.00 39.39 2.62
280 281 3.936203 TCACGGGCGTGCCTCTTT 61.936 61.111 11.25 0.00 45.04 2.52
281 282 4.681978 GTCACGGGCGTGCCTCTT 62.682 66.667 11.25 0.00 45.04 2.85
290 291 3.909258 TTTCGCGAGAGTCACGGGC 62.909 63.158 19.58 3.80 43.69 6.13
291 292 1.801913 CTTTCGCGAGAGTCACGGG 60.802 63.158 17.92 18.58 43.69 5.28
292 293 0.386858 TTCTTTCGCGAGAGTCACGG 60.387 55.000 24.05 0.86 43.69 4.94
293 294 1.405461 TTTCTTTCGCGAGAGTCACG 58.595 50.000 24.05 5.53 43.69 4.35
294 295 3.050619 TCTTTTCTTTCGCGAGAGTCAC 58.949 45.455 24.05 0.00 43.69 3.67
295 296 3.364889 TCTTTTCTTTCGCGAGAGTCA 57.635 42.857 24.05 11.16 43.69 3.41
296 297 4.710528 TTTCTTTTCTTTCGCGAGAGTC 57.289 40.909 24.05 0.00 43.69 3.36
297 298 5.263948 GTTTTTCTTTTCTTTCGCGAGAGT 58.736 37.500 24.05 0.00 43.69 3.24
298 299 4.373096 CGTTTTTCTTTTCTTTCGCGAGAG 59.627 41.667 19.89 19.89 43.69 3.20
299 300 4.033129 TCGTTTTTCTTTTCTTTCGCGAGA 59.967 37.500 9.59 3.35 39.20 4.04
300 301 4.268522 TCGTTTTTCTTTTCTTTCGCGAG 58.731 39.130 9.59 0.00 0.00 5.03
301 302 4.261736 TCGTTTTTCTTTTCTTTCGCGA 57.738 36.364 3.71 3.71 0.00 5.87
302 303 4.984570 TTCGTTTTTCTTTTCTTTCGCG 57.015 36.364 0.00 0.00 0.00 5.87
303 304 5.660983 CGTTTTCGTTTTTCTTTTCTTTCGC 59.339 36.000 0.00 0.00 38.65 4.70
304 305 5.660983 GCGTTTTCGTTTTTCTTTTCTTTCG 59.339 36.000 0.00 0.00 46.03 3.46
305 306 5.660983 CGCGTTTTCGTTTTTCTTTTCTTTC 59.339 36.000 0.00 0.00 46.03 2.62
306 307 5.117440 ACGCGTTTTCGTTTTTCTTTTCTTT 59.883 32.000 5.58 0.00 46.03 2.52
307 308 4.618067 ACGCGTTTTCGTTTTTCTTTTCTT 59.382 33.333 5.58 0.00 46.03 2.52
308 309 4.160594 ACGCGTTTTCGTTTTTCTTTTCT 58.839 34.783 5.58 0.00 46.03 2.52
309 310 4.473441 ACGCGTTTTCGTTTTTCTTTTC 57.527 36.364 5.58 0.00 46.03 2.29
310 311 6.557593 AATACGCGTTTTCGTTTTTCTTTT 57.442 29.167 20.78 0.00 46.03 2.27
311 312 6.557593 AAATACGCGTTTTCGTTTTTCTTT 57.442 29.167 20.78 0.00 46.03 2.52
312 313 6.557593 AAAATACGCGTTTTCGTTTTTCTT 57.442 29.167 20.78 1.18 40.68 2.52
313 314 6.557593 AAAAATACGCGTTTTCGTTTTTCT 57.442 29.167 20.78 0.00 40.68 2.52
336 337 9.912634 CCTGTTAATTGCAGATCTTTTCTAAAA 57.087 29.630 11.82 0.00 36.12 1.52
337 338 8.028938 GCCTGTTAATTGCAGATCTTTTCTAAA 58.971 33.333 11.82 0.00 36.12 1.85
338 339 7.362920 GGCCTGTTAATTGCAGATCTTTTCTAA 60.363 37.037 11.82 0.00 36.12 2.10
339 340 6.095440 GGCCTGTTAATTGCAGATCTTTTCTA 59.905 38.462 11.82 0.00 36.12 2.10
340 341 5.105595 GGCCTGTTAATTGCAGATCTTTTCT 60.106 40.000 11.82 0.00 36.12 2.52
341 342 5.105063 GGCCTGTTAATTGCAGATCTTTTC 58.895 41.667 11.82 0.00 36.12 2.29
342 343 4.380867 CGGCCTGTTAATTGCAGATCTTTT 60.381 41.667 0.00 0.00 36.12 2.27
343 344 3.129287 CGGCCTGTTAATTGCAGATCTTT 59.871 43.478 0.00 0.00 36.12 2.52
344 345 2.684881 CGGCCTGTTAATTGCAGATCTT 59.315 45.455 0.00 0.00 36.12 2.40
345 346 2.292267 CGGCCTGTTAATTGCAGATCT 58.708 47.619 0.00 0.00 36.12 2.75
346 347 1.334869 CCGGCCTGTTAATTGCAGATC 59.665 52.381 0.00 0.00 36.12 2.75
347 348 1.392589 CCGGCCTGTTAATTGCAGAT 58.607 50.000 0.00 0.00 36.12 2.90
348 349 0.679640 CCCGGCCTGTTAATTGCAGA 60.680 55.000 0.00 0.00 36.12 4.26
349 350 1.666209 CCCCGGCCTGTTAATTGCAG 61.666 60.000 0.00 5.25 0.00 4.41
350 351 1.680651 CCCCGGCCTGTTAATTGCA 60.681 57.895 0.00 0.00 0.00 4.08
351 352 1.379309 TCCCCGGCCTGTTAATTGC 60.379 57.895 0.00 0.00 0.00 3.56
352 353 0.254747 TCTCCCCGGCCTGTTAATTG 59.745 55.000 0.00 0.00 0.00 2.32
353 354 0.996583 TTCTCCCCGGCCTGTTAATT 59.003 50.000 0.00 0.00 0.00 1.40
507 509 3.148279 CGACGGAGGAGGAAGGGG 61.148 72.222 0.00 0.00 0.00 4.79
792 794 1.543429 CCAAAGTCCAAGCGAAGACCT 60.543 52.381 0.00 0.00 33.29 3.85
1205 1229 2.409975 CGAAAACTCCGGAACTAGCAA 58.590 47.619 5.23 0.00 0.00 3.91
1215 1242 0.306533 CAACCACACCGAAAACTCCG 59.693 55.000 0.00 0.00 0.00 4.63
1224 1251 2.518349 AAGGCCACAACCACACCG 60.518 61.111 5.01 0.00 0.00 4.94
1227 1254 1.152777 CTGGAAGGCCACAACCACA 60.153 57.895 5.01 0.00 39.92 4.17
1237 1264 0.250081 GATCCGACCATCTGGAAGGC 60.250 60.000 2.55 0.00 37.90 4.35
1238 1265 1.069823 CAGATCCGACCATCTGGAAGG 59.930 57.143 2.55 5.88 44.29 3.46
1245 1272 2.402282 TACGCGCAGATCCGACCATC 62.402 60.000 5.73 0.00 0.00 3.51
1265 1292 1.495951 CACCTAAAACGTGCTCGCC 59.504 57.895 8.29 0.00 41.18 5.54
1278 1305 2.214216 ACACAAGAGCCGGCACCTA 61.214 57.895 31.54 0.00 0.00 3.08
1279 1306 3.560251 ACACAAGAGCCGGCACCT 61.560 61.111 31.54 22.20 0.00 4.00
1280 1307 3.357079 CACACAAGAGCCGGCACC 61.357 66.667 31.54 20.10 0.00 5.01
1292 1319 2.280404 TTTACCAACCGCCCCACACA 62.280 55.000 0.00 0.00 0.00 3.72
1298 1325 1.541379 ACTGAATTTACCAACCGCCC 58.459 50.000 0.00 0.00 0.00 6.13
1502 1539 6.108687 TGTGTTCTAAGCATATGTCTCAAGG 58.891 40.000 4.29 0.00 0.00 3.61
1610 1647 4.518211 CCAGTTCACAGCTCTTTCAGAAAT 59.482 41.667 0.00 0.00 0.00 2.17
1674 1711 1.164411 CTGCACAAATAGGCGACCAA 58.836 50.000 0.00 0.00 0.00 3.67
1799 1956 8.876275 AAAGTATGCAATGCAAACCTATATTG 57.124 30.769 13.45 0.00 43.62 1.90
1805 1962 3.836949 CGAAAGTATGCAATGCAAACCT 58.163 40.909 13.45 5.39 43.62 3.50
1814 1971 3.829886 CTTTCCAGCGAAAGTATGCAA 57.170 42.857 0.00 0.00 46.70 4.08
1882 2046 7.857569 ACAGAAATTCATCAAGCACAAAAATG 58.142 30.769 0.00 0.00 0.00 2.32
1899 2063 8.062065 TCGAATTAAGGGCATAAACAGAAATT 57.938 30.769 0.00 0.00 0.00 1.82
1923 2087 7.253422 TGCAAATTACTCCGTACTACTTACTC 58.747 38.462 0.00 0.00 0.00 2.59
1928 2092 7.101054 TGAATTGCAAATTACTCCGTACTACT 58.899 34.615 1.71 0.00 0.00 2.57
1978 2142 5.257262 AGAGCTGTGTCAGAGTTCTATACA 58.743 41.667 13.74 0.00 32.44 2.29
2031 2195 2.867624 AGTGGATGCAGCTTCTTTTGA 58.132 42.857 0.22 0.00 0.00 2.69
2038 2202 0.107312 CTGCCTAGTGGATGCAGCTT 60.107 55.000 0.22 0.00 45.09 3.74
2227 2393 6.575162 AGAACCACACTGGAAAAATATGAC 57.425 37.500 0.00 0.00 40.96 3.06
2229 2395 8.661352 AAAAAGAACCACACTGGAAAAATATG 57.339 30.769 0.00 0.00 40.96 1.78
2230 2396 7.931407 GGAAAAAGAACCACACTGGAAAAATAT 59.069 33.333 0.00 0.00 40.96 1.28
2231 2397 7.125053 AGGAAAAAGAACCACACTGGAAAAATA 59.875 33.333 0.00 0.00 40.96 1.40
2232 2398 6.070251 AGGAAAAAGAACCACACTGGAAAAAT 60.070 34.615 0.00 0.00 40.96 1.82
2296 2462 3.559655 GGCTGAAAAACCCATCAACAAAC 59.440 43.478 0.00 0.00 0.00 2.93
2326 2492 0.934496 TGTTGACTCCGAGTTTTGCG 59.066 50.000 1.71 0.00 0.00 4.85
2554 6333 6.346279 CGAACATGTTCTAGTGCGAAGTTTTA 60.346 38.462 30.45 0.00 39.11 1.52
2559 6338 2.987149 ACGAACATGTTCTAGTGCGAAG 59.013 45.455 30.45 16.89 39.11 3.79
2563 6342 2.412089 GGTGACGAACATGTTCTAGTGC 59.588 50.000 30.45 18.18 37.44 4.40
2565 6344 4.537135 ATGGTGACGAACATGTTCTAGT 57.463 40.909 30.45 23.27 37.44 2.57
2579 6358 9.355215 GTATTAGTATGTATGCACTATGGTGAC 57.645 37.037 14.15 2.97 45.61 3.67
2612 6391 4.117685 ACTAGGGTTAAATTTCTAGCGCG 58.882 43.478 0.00 0.00 34.24 6.86
2638 6417 1.583967 CGACGAGTGAGGATGTCGC 60.584 63.158 0.45 0.00 46.11 5.19
2641 6420 0.101399 GCATCGACGAGTGAGGATGT 59.899 55.000 3.01 0.00 38.75 3.06
2652 6431 0.591741 GTTCTACCTCGGCATCGACG 60.592 60.000 0.00 0.00 40.88 5.12
2658 6437 1.295423 GCCAAGTTCTACCTCGGCA 59.705 57.895 0.00 0.00 39.38 5.69
2659 6438 1.810030 CGCCAAGTTCTACCTCGGC 60.810 63.158 0.00 0.00 36.16 5.54
2681 6460 3.414700 CCACGCGCTCCACAAGTC 61.415 66.667 5.73 0.00 0.00 3.01
2727 6518 2.815647 GCGGAGAAGAAGGCACCG 60.816 66.667 0.00 0.00 45.26 4.94
2730 6521 4.082523 CGGGCGGAGAAGAAGGCA 62.083 66.667 0.00 0.00 0.00 4.75
2746 6537 3.793144 GCAGAGAAAGCGGTGGCG 61.793 66.667 0.00 0.00 46.35 5.69
2789 6580 0.320683 CCGCACATCAAGAGGTGTCA 60.321 55.000 15.17 0.00 44.15 3.58
2943 6734 1.638388 GAGCAAGCACGCATAGCACA 61.638 55.000 0.00 0.00 0.00 4.57
3074 6874 1.888436 AATTCGTCCTCTCCGCTGCA 61.888 55.000 0.00 0.00 0.00 4.41
3545 7353 5.505173 ACTTGCATTCCATATAAGTGCAC 57.495 39.130 9.40 9.40 44.53 4.57
3602 8133 1.404748 GACGGAGGGAGTACTTGCTAC 59.595 57.143 0.00 0.00 0.00 3.58
3603 8134 1.684248 GGACGGAGGGAGTACTTGCTA 60.684 57.143 0.00 0.00 0.00 3.49
3604 8135 0.971447 GGACGGAGGGAGTACTTGCT 60.971 60.000 0.00 0.00 0.00 3.91
3605 8136 1.255667 TGGACGGAGGGAGTACTTGC 61.256 60.000 0.00 0.00 0.00 4.01
3606 8137 1.263356 TTGGACGGAGGGAGTACTTG 58.737 55.000 0.00 0.00 0.00 3.16
3607 8138 2.019807 TTTGGACGGAGGGAGTACTT 57.980 50.000 0.00 0.00 0.00 2.24
3608 8139 2.019807 TTTTGGACGGAGGGAGTACT 57.980 50.000 0.00 0.00 0.00 2.73
3609 8140 2.845363 TTTTTGGACGGAGGGAGTAC 57.155 50.000 0.00 0.00 0.00 2.73
3610 8141 4.098894 AGTATTTTTGGACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
3611 8142 2.910977 AGTATTTTTGGACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
3612 8143 3.629142 AGTATTTTTGGACGGAGGGAG 57.371 47.619 0.00 0.00 0.00 4.30
3613 8144 3.073356 ACAAGTATTTTTGGACGGAGGGA 59.927 43.478 0.00 0.00 32.32 4.20
3614 8145 3.418047 ACAAGTATTTTTGGACGGAGGG 58.582 45.455 0.00 0.00 32.32 4.30
3615 8146 4.324267 AGACAAGTATTTTTGGACGGAGG 58.676 43.478 0.00 0.00 32.32 4.30
3616 8147 5.941948 AAGACAAGTATTTTTGGACGGAG 57.058 39.130 0.00 0.00 32.32 4.63
3617 8148 6.761312 TCTAAGACAAGTATTTTTGGACGGA 58.239 36.000 0.00 0.00 32.32 4.69
3618 8149 7.429636 TTCTAAGACAAGTATTTTTGGACGG 57.570 36.000 0.00 0.00 32.32 4.79
3619 8150 9.329913 CATTTCTAAGACAAGTATTTTTGGACG 57.670 33.333 0.00 0.00 32.32 4.79
3620 8151 9.626045 CCATTTCTAAGACAAGTATTTTTGGAC 57.374 33.333 0.00 0.00 32.32 4.02
3621 8152 9.581289 TCCATTTCTAAGACAAGTATTTTTGGA 57.419 29.630 0.00 0.00 32.32 3.53
3629 8160 9.158233 CCGTTTTATCCATTTCTAAGACAAGTA 57.842 33.333 0.00 0.00 0.00 2.24
3630 8161 7.881232 TCCGTTTTATCCATTTCTAAGACAAGT 59.119 33.333 0.00 0.00 0.00 3.16
3631 8162 8.263940 TCCGTTTTATCCATTTCTAAGACAAG 57.736 34.615 0.00 0.00 0.00 3.16
3632 8163 8.673711 CATCCGTTTTATCCATTTCTAAGACAA 58.326 33.333 0.00 0.00 0.00 3.18
3633 8164 7.827236 ACATCCGTTTTATCCATTTCTAAGACA 59.173 33.333 0.00 0.00 0.00 3.41
3634 8165 8.209917 ACATCCGTTTTATCCATTTCTAAGAC 57.790 34.615 0.00 0.00 0.00 3.01
3675 8206 9.084533 GTCCTAGAAATGGATGTATCTAGACTT 57.915 37.037 9.60 0.00 42.48 3.01
3676 8207 8.228206 TGTCCTAGAAATGGATGTATCTAGACT 58.772 37.037 9.60 0.00 42.48 3.24
3677 8208 8.410673 TGTCCTAGAAATGGATGTATCTAGAC 57.589 38.462 9.60 7.06 42.48 2.59
3678 8209 9.083422 CTTGTCCTAGAAATGGATGTATCTAGA 57.917 37.037 9.60 0.00 42.48 2.43
3679 8210 8.865090 ACTTGTCCTAGAAATGGATGTATCTAG 58.135 37.037 0.00 0.00 40.55 2.43
3680 8211 8.783660 ACTTGTCCTAGAAATGGATGTATCTA 57.216 34.615 0.00 0.00 35.87 1.98
3681 8212 7.682787 ACTTGTCCTAGAAATGGATGTATCT 57.317 36.000 0.00 0.00 35.87 1.98
3685 8216 9.178758 GAAAATACTTGTCCTAGAAATGGATGT 57.821 33.333 0.00 0.00 35.87 3.06
3686 8217 8.338259 CGAAAATACTTGTCCTAGAAATGGATG 58.662 37.037 0.00 0.00 35.87 3.51
3687 8218 7.499232 CCGAAAATACTTGTCCTAGAAATGGAT 59.501 37.037 0.00 0.00 35.87 3.41
3688 8219 6.821665 CCGAAAATACTTGTCCTAGAAATGGA 59.178 38.462 0.00 0.00 0.00 3.41
3689 8220 6.821665 TCCGAAAATACTTGTCCTAGAAATGG 59.178 38.462 0.00 0.00 0.00 3.16
3690 8221 7.464178 CGTCCGAAAATACTTGTCCTAGAAATG 60.464 40.741 0.00 0.00 0.00 2.32
3691 8222 6.534079 CGTCCGAAAATACTTGTCCTAGAAAT 59.466 38.462 0.00 0.00 0.00 2.17
3692 8223 5.865552 CGTCCGAAAATACTTGTCCTAGAAA 59.134 40.000 0.00 0.00 0.00 2.52
3693 8224 5.404946 CGTCCGAAAATACTTGTCCTAGAA 58.595 41.667 0.00 0.00 0.00 2.10
3694 8225 4.142315 CCGTCCGAAAATACTTGTCCTAGA 60.142 45.833 0.00 0.00 0.00 2.43
3695 8226 4.110482 CCGTCCGAAAATACTTGTCCTAG 58.890 47.826 0.00 0.00 0.00 3.02
3696 8227 3.763360 TCCGTCCGAAAATACTTGTCCTA 59.237 43.478 0.00 0.00 0.00 2.94
3697 8228 2.564062 TCCGTCCGAAAATACTTGTCCT 59.436 45.455 0.00 0.00 0.00 3.85
3698 8229 2.928116 CTCCGTCCGAAAATACTTGTCC 59.072 50.000 0.00 0.00 0.00 4.02
3699 8230 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
3700 8231 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
3701 8232 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
3702 8233 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
3703 8234 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
3704 8235 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
3705 8236 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
3706 8237 1.479730 GTACTCCCTCCGTCCGAAAAT 59.520 52.381 0.00 0.00 0.00 1.82
3707 8238 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
3708 8239 0.038744 AGTACTCCCTCCGTCCGAAA 59.961 55.000 0.00 0.00 0.00 3.46
3709 8240 0.038744 AAGTACTCCCTCCGTCCGAA 59.961 55.000 0.00 0.00 0.00 4.30
3710 8241 0.911769 TAAGTACTCCCTCCGTCCGA 59.088 55.000 0.00 0.00 0.00 4.55
3711 8242 1.978454 ATAAGTACTCCCTCCGTCCG 58.022 55.000 0.00 0.00 0.00 4.79
3712 8243 4.081254 ACAAAATAAGTACTCCCTCCGTCC 60.081 45.833 0.00 0.00 0.00 4.79
3713 8244 5.082251 ACAAAATAAGTACTCCCTCCGTC 57.918 43.478 0.00 0.00 0.00 4.79
3714 8245 4.529377 TGACAAAATAAGTACTCCCTCCGT 59.471 41.667 0.00 0.00 0.00 4.69
3715 8246 4.868734 GTGACAAAATAAGTACTCCCTCCG 59.131 45.833 0.00 0.00 0.00 4.63
3716 8247 5.183969 GGTGACAAAATAAGTACTCCCTCC 58.816 45.833 0.00 0.00 0.00 4.30
3717 8248 5.183969 GGGTGACAAAATAAGTACTCCCTC 58.816 45.833 0.00 0.00 0.00 4.30
3718 8249 4.600111 TGGGTGACAAAATAAGTACTCCCT 59.400 41.667 0.00 0.00 33.15 4.20
3719 8250 4.698780 GTGGGTGACAAAATAAGTACTCCC 59.301 45.833 0.00 0.00 0.00 4.30
3720 8251 5.180680 GTGTGGGTGACAAAATAAGTACTCC 59.819 44.000 0.00 0.00 35.91 3.85
3721 8252 5.995897 AGTGTGGGTGACAAAATAAGTACTC 59.004 40.000 0.00 0.00 35.91 2.59
3722 8253 5.937111 AGTGTGGGTGACAAAATAAGTACT 58.063 37.500 0.00 0.00 35.91 2.73
3723 8254 6.628919 AAGTGTGGGTGACAAAATAAGTAC 57.371 37.500 0.00 0.00 35.91 2.73
3724 8255 6.460399 GCAAAGTGTGGGTGACAAAATAAGTA 60.460 38.462 0.00 0.00 35.91 2.24
3725 8256 5.681179 GCAAAGTGTGGGTGACAAAATAAGT 60.681 40.000 0.00 0.00 35.91 2.24
3726 8257 4.744631 GCAAAGTGTGGGTGACAAAATAAG 59.255 41.667 0.00 0.00 35.91 1.73
3727 8258 4.160439 TGCAAAGTGTGGGTGACAAAATAA 59.840 37.500 0.00 0.00 35.91 1.40
3728 8259 3.701542 TGCAAAGTGTGGGTGACAAAATA 59.298 39.130 0.00 0.00 35.91 1.40
3734 8265 0.751643 ACCTGCAAAGTGTGGGTGAC 60.752 55.000 0.00 0.00 0.00 3.67
3870 8401 5.611796 TTGATGCCGAATATATGTGCTTC 57.388 39.130 8.89 8.89 0.00 3.86
3943 8474 6.494146 AGACATGAGAGATAGATGATCAAGCA 59.506 38.462 0.00 0.00 36.98 3.91
4030 8561 4.437390 GCATAGAACAAACAATCGGTCCAG 60.437 45.833 0.00 0.00 0.00 3.86
4078 8609 5.195146 TCTGAGGGGAGTATTAACCACTAGA 59.805 44.000 0.00 0.00 40.30 2.43
4096 8627 8.853077 TTATATGTAATTCAAGCCATCTGAGG 57.147 34.615 0.00 0.00 0.00 3.86
4129 8660 6.147821 AGCTGTGTTGTGCTATTTACTAAGTG 59.852 38.462 0.00 0.00 37.81 3.16
4166 8697 4.808364 TCACATGGTTTTTGCAGTAAAAGC 59.192 37.500 15.56 15.56 42.71 3.51
4222 8753 8.434392 TCTATGACATAGTTAAAATGGGGGTAC 58.566 37.037 19.60 0.00 34.47 3.34
4252 8783 4.097286 TGCACCAAAAGGACTACAAAGAAC 59.903 41.667 0.00 0.00 0.00 3.01
4296 8844 8.238481 ACAAACAGAACAAAGTAAACACAATG 57.762 30.769 0.00 0.00 0.00 2.82
4297 8845 8.825667 AACAAACAGAACAAAGTAAACACAAT 57.174 26.923 0.00 0.00 0.00 2.71
4328 8876 1.749063 CGCAGTAGGTCCTGTGATACA 59.251 52.381 0.00 0.00 43.97 2.29
4565 9119 3.633525 ACAGCTGTAATTGCACCATATGG 59.366 43.478 20.16 20.68 42.17 2.74
4832 9386 7.405292 TCTGTAGGATCAAATGATTTCAGGTT 58.595 34.615 0.00 0.00 34.37 3.50
4833 9387 6.962182 TCTGTAGGATCAAATGATTTCAGGT 58.038 36.000 0.00 0.00 34.37 4.00
4921 9475 1.451028 GCGGATGCTCTGGCTCTTT 60.451 57.895 0.00 0.00 39.59 2.52
4995 9550 1.531423 CAACTGAGCTCATGGCACTT 58.469 50.000 18.63 0.00 44.79 3.16
4999 9554 4.315588 AGCAACTGAGCTCATGGC 57.684 55.556 18.63 19.81 42.18 4.40
5071 9626 0.631212 GGAGTCCCATCCACCCATTT 59.369 55.000 0.00 0.00 39.34 2.32
5190 9745 2.098117 GTCACATAACAGCATTCCAGGC 59.902 50.000 0.00 0.00 0.00 4.85
5199 9754 2.095768 ACAACATGCGTCACATAACAGC 60.096 45.455 0.00 0.00 36.64 4.40
5212 9767 4.567959 AGCAAACAGAGAAAAACAACATGC 59.432 37.500 0.00 0.00 0.00 4.06
5380 9937 4.217118 GCAGACCATGAAACAAAGAGATGT 59.783 41.667 0.00 0.00 34.24 3.06
5421 9978 4.221041 TCACCACGACACTTATTATGGACA 59.779 41.667 0.00 0.00 0.00 4.02
5455 10012 4.023707 CCATGAAACAAAGAGACAGTGTCC 60.024 45.833 19.71 11.17 32.18 4.02
5460 10017 4.320057 GCAGACCATGAAACAAAGAGACAG 60.320 45.833 0.00 0.00 0.00 3.51
5466 10023 3.316029 TCACAGCAGACCATGAAACAAAG 59.684 43.478 0.00 0.00 0.00 2.77
5467 10024 3.066621 GTCACAGCAGACCATGAAACAAA 59.933 43.478 0.00 0.00 32.36 2.83
5468 10025 2.618241 GTCACAGCAGACCATGAAACAA 59.382 45.455 0.00 0.00 32.36 2.83
5469 10026 2.221169 GTCACAGCAGACCATGAAACA 58.779 47.619 0.00 0.00 32.36 2.83
5470 10027 2.031682 GTGTCACAGCAGACCATGAAAC 60.032 50.000 0.00 0.00 37.73 2.78
5471 10028 2.221169 GTGTCACAGCAGACCATGAAA 58.779 47.619 0.00 0.00 37.73 2.69
5472 10029 1.140652 TGTGTCACAGCAGACCATGAA 59.859 47.619 0.18 0.00 37.73 2.57
5473 10030 0.758123 TGTGTCACAGCAGACCATGA 59.242 50.000 0.18 0.00 37.73 3.07
5474 10031 0.870393 GTGTGTCACAGCAGACCATG 59.130 55.000 5.74 0.00 37.73 3.66
5475 10032 0.761187 AGTGTGTCACAGCAGACCAT 59.239 50.000 5.74 0.00 37.73 3.55
5476 10033 0.104855 GAGTGTGTCACAGCAGACCA 59.895 55.000 5.74 0.00 37.73 4.02
5477 10034 0.601311 GGAGTGTGTCACAGCAGACC 60.601 60.000 5.74 2.38 37.73 3.85
5478 10035 0.601311 GGGAGTGTGTCACAGCAGAC 60.601 60.000 5.74 0.00 36.74 3.51
5479 10036 0.760567 AGGGAGTGTGTCACAGCAGA 60.761 55.000 5.74 0.00 36.74 4.26
5480 10037 0.320247 GAGGGAGTGTGTCACAGCAG 60.320 60.000 5.74 0.00 36.74 4.24
5481 10038 1.748403 GAGGGAGTGTGTCACAGCA 59.252 57.895 5.74 0.00 36.74 4.41
5482 10039 1.373497 CGAGGGAGTGTGTCACAGC 60.373 63.158 5.74 1.44 36.74 4.40
5483 10040 0.039074 GACGAGGGAGTGTGTCACAG 60.039 60.000 5.74 0.00 36.74 3.66
5484 10041 1.461091 GGACGAGGGAGTGTGTCACA 61.461 60.000 0.18 0.18 36.74 3.58
5485 10042 1.289380 GGACGAGGGAGTGTGTCAC 59.711 63.158 0.00 0.00 33.04 3.67
5486 10043 0.541998 ATGGACGAGGGAGTGTGTCA 60.542 55.000 0.00 0.00 33.04 3.58
5487 10044 1.471119 TATGGACGAGGGAGTGTGTC 58.529 55.000 0.00 0.00 0.00 3.67
5488 10045 1.933021 TTATGGACGAGGGAGTGTGT 58.067 50.000 0.00 0.00 0.00 3.72
5489 10046 4.099573 ACTTATTATGGACGAGGGAGTGTG 59.900 45.833 0.00 0.00 0.00 3.82
5490 10047 4.099573 CACTTATTATGGACGAGGGAGTGT 59.900 45.833 0.00 0.00 0.00 3.55
5491 10048 4.099573 ACACTTATTATGGACGAGGGAGTG 59.900 45.833 0.00 0.00 38.28 3.51
5492 10049 4.287552 ACACTTATTATGGACGAGGGAGT 58.712 43.478 0.00 0.00 0.00 3.85
5493 10050 4.556898 CGACACTTATTATGGACGAGGGAG 60.557 50.000 0.00 0.00 0.00 4.30
5494 10051 3.317149 CGACACTTATTATGGACGAGGGA 59.683 47.826 0.00 0.00 0.00 4.20
5495 10052 3.067742 ACGACACTTATTATGGACGAGGG 59.932 47.826 0.00 0.00 0.00 4.30
5496 10053 4.042398 CACGACACTTATTATGGACGAGG 58.958 47.826 0.00 0.00 0.00 4.63
5497 10054 4.042398 CCACGACACTTATTATGGACGAG 58.958 47.826 0.00 0.00 0.00 4.18
5498 10055 3.444742 ACCACGACACTTATTATGGACGA 59.555 43.478 0.00 0.00 0.00 4.20
5499 10056 3.550275 CACCACGACACTTATTATGGACG 59.450 47.826 0.00 0.00 0.00 4.79
5530 10378 3.987868 CCGATCCATAATAAGTGTCGTGG 59.012 47.826 0.00 0.00 0.00 4.94
5538 10386 3.515502 TGCTCCCTCCGATCCATAATAAG 59.484 47.826 0.00 0.00 0.00 1.73
5575 10423 0.883833 CCAAAAGGATGAAGCAGCGT 59.116 50.000 0.00 0.00 0.00 5.07
5596 10444 2.549754 CAAAACTGGATCAGCAGAACGT 59.450 45.455 6.04 0.00 34.37 3.99
5597 10445 2.095567 CCAAAACTGGATCAGCAGAACG 60.096 50.000 6.04 0.00 34.37 3.95
5601 10449 3.068590 ACAAACCAAAACTGGATCAGCAG 59.931 43.478 0.00 0.00 34.37 4.24
5603 10451 3.733443 ACAAACCAAAACTGGATCAGC 57.267 42.857 0.00 0.00 34.37 4.26
5617 10465 3.377798 TCACCGGTAAAGAACAACAAACC 59.622 43.478 6.87 0.00 0.00 3.27
5620 10468 5.366460 TGTATCACCGGTAAAGAACAACAA 58.634 37.500 6.87 0.00 0.00 2.83
5623 10471 8.795842 ATAATTGTATCACCGGTAAAGAACAA 57.204 30.769 6.87 14.06 0.00 2.83
5624 10472 8.795842 AATAATTGTATCACCGGTAAAGAACA 57.204 30.769 6.87 4.98 0.00 3.18
5735 10583 8.231837 GCAAAATGCAATGTTGTAGATTCATTT 58.768 29.630 0.00 0.00 43.61 2.32
5736 10584 7.745015 GCAAAATGCAATGTTGTAGATTCATT 58.255 30.769 0.00 0.00 43.61 2.57
5737 10585 7.298507 GCAAAATGCAATGTTGTAGATTCAT 57.701 32.000 0.00 0.00 43.61 2.57
5759 11547 3.399330 CCTAAAAGGTTCTCTCGTTGCA 58.601 45.455 0.00 0.00 0.00 4.08
5781 11569 5.774690 ACTCTGGGAACAAAATATTGCTGAA 59.225 36.000 5.11 0.00 42.06 3.02
5856 11645 3.248024 ACCTAAATGGACCTGTCACTGA 58.752 45.455 0.00 0.00 39.71 3.41
5879 11668 5.118664 TGAAGACGAGACAACGATTTCAATC 59.881 40.000 0.00 0.00 36.82 2.67
5888 11677 3.827625 AGAAGATGAAGACGAGACAACG 58.172 45.455 0.00 0.00 39.31 4.10
5927 11719 2.677836 TCCATTTACGATGACTGCTTGC 59.322 45.455 0.00 0.00 0.00 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.