Multiple sequence alignment - TraesCS3D01G372700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G372700 chr3D 100.000 5812 0 0 1 5812 486036117 486041928 0.000000e+00 10733.0
1 TraesCS3D01G372700 chr3D 91.429 70 2 4 5082 5148 185070553 185070621 6.200000e-15 93.5
2 TraesCS3D01G372700 chr3A 95.330 4690 139 30 543 5206 629210977 629215612 0.000000e+00 7374.0
3 TraesCS3D01G372700 chr3A 93.882 474 18 5 1 463 629206673 629207146 0.000000e+00 704.0
4 TraesCS3D01G372700 chr3A 93.802 242 11 2 5398 5635 629215720 629215961 1.540000e-95 361.0
5 TraesCS3D01G372700 chr3A 90.062 161 16 0 5652 5812 629216918 629217078 5.900000e-50 209.0
6 TraesCS3D01G372700 chr3A 94.667 75 3 1 5234 5307 629215607 629215681 1.320000e-21 115.0
7 TraesCS3D01G372700 chr3A 76.498 217 43 7 1329 1543 63430559 63430349 1.710000e-20 111.0
8 TraesCS3D01G372700 chr3B 95.351 3162 129 14 1939 5087 648735705 648738861 0.000000e+00 5009.0
9 TraesCS3D01G372700 chr3B 93.851 1366 54 14 570 1916 648734356 648735710 0.000000e+00 2030.0
10 TraesCS3D01G372700 chr3B 84.277 477 51 13 1 463 648732006 648732472 1.490000e-120 444.0
11 TraesCS3D01G372700 chr3B 89.189 148 16 0 1 148 648131011 648131158 9.950000e-43 185.0
12 TraesCS3D01G372700 chr3B 86.957 92 4 7 5198 5287 648738959 648739044 4.790000e-16 97.1
13 TraesCS3D01G372700 chr6D 77.358 212 39 7 1329 1537 36218467 36218672 3.680000e-22 117.0
14 TraesCS3D01G372700 chr4A 76.498 217 43 7 1329 1543 482877073 482876863 1.710000e-20 111.0
15 TraesCS3D01G372700 chr4A 77.114 201 39 6 1329 1527 507557790 507557595 6.160000e-20 110.0
16 TraesCS3D01G372700 chr4D 80.132 151 25 3 1331 1479 369973152 369973299 2.210000e-19 108.0
17 TraesCS3D01G372700 chr6A 76.617 201 40 6 1329 1527 105170725 105170920 2.860000e-18 104.0
18 TraesCS3D01G372700 chr6B 94.643 56 3 0 5086 5141 154545110 154545055 2.890000e-13 87.9
19 TraesCS3D01G372700 chr6B 97.917 48 1 0 5086 5133 46955947 46955994 3.730000e-12 84.2
20 TraesCS3D01G372700 chr2B 96.226 53 2 0 5086 5138 220282482 220282534 2.890000e-13 87.9
21 TraesCS3D01G372700 chr5B 97.959 49 1 0 5086 5134 282503667 282503619 1.040000e-12 86.1
22 TraesCS3D01G372700 chr1B 100.000 45 0 0 5086 5130 41366328 41366284 3.730000e-12 84.2
23 TraesCS3D01G372700 chr1B 92.857 56 4 0 5086 5141 432953429 432953374 1.340000e-11 82.4
24 TraesCS3D01G372700 chr2D 90.741 54 4 1 5076 5129 17142778 17142726 2.910000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G372700 chr3D 486036117 486041928 5811 False 10733.000 10733 100.0000 1 5812 1 chr3D.!!$F2 5811
1 TraesCS3D01G372700 chr3A 629206673 629217078 10405 False 1752.600 7374 93.5486 1 5812 5 chr3A.!!$F1 5811
2 TraesCS3D01G372700 chr3B 648732006 648739044 7038 False 1895.025 5009 90.1090 1 5287 4 chr3B.!!$F2 5286

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
628 6240 0.038159 AAAGCTTGTCGGTCTCTCGG 60.038 55.0 0.00 0.0 0.00 4.63 F
990 6612 0.163788 CGATTGCAGTTCGTGTGTCC 59.836 55.0 11.69 0.0 32.08 4.02 F
1286 6924 0.603707 ATTAGGTGGATGGATGCGCG 60.604 55.0 0.00 0.0 0.00 6.86 F
2209 7861 1.243902 TGGGCCTTGAATTGTTCGTC 58.756 50.0 4.53 0.0 0.00 4.20 F
3156 8812 2.512692 TTATGATGGTTGCTGCCAGT 57.487 45.0 0.00 0.0 42.47 4.00 F
4120 9779 0.607489 ACTTGCCATGCACTCTCCAC 60.607 55.0 0.00 0.0 38.71 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2098 7739 0.472471 AAGTTCTGAACGAGGGCCAA 59.528 50.000 14.35 0.0 36.23 4.52 R
2323 7979 0.953471 TACATGGTTGCTGGCACGAC 60.953 55.000 0.00 0.0 0.00 4.34 R
2792 8448 4.676546 TGAAAAACACATCGTCAATTGCA 58.323 34.783 0.00 0.0 0.00 4.08 R
4014 9673 0.329261 CTCCAGGAGGCAATGTTCCA 59.671 55.000 8.88 0.0 35.88 3.53 R
4664 10323 0.236711 CACTCGCCTCAAACAGCTTG 59.763 55.000 0.00 0.0 36.25 4.01 R
5346 11034 0.105039 CTCGCTGGGAATGACTACCC 59.895 60.000 0.00 0.0 45.74 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.601583 TGGTTCAGTTTATACGCCTATGA 57.398 39.130 0.00 0.00 0.00 2.15
24 25 5.353938 TGGTTCAGTTTATACGCCTATGAC 58.646 41.667 0.00 0.00 0.00 3.06
55 59 2.027561 TGGAGGTACAATTGAACCCTCG 60.028 50.000 23.62 0.00 42.14 4.63
149 153 1.281419 TGGATCACACCCCACGTATT 58.719 50.000 0.00 0.00 0.00 1.89
173 182 4.738998 CCGCCATGGTTGGAGCCA 62.739 66.667 17.57 0.00 46.92 4.75
253 263 4.382470 GCATGTACCACAGTCAATCTCTCT 60.382 45.833 0.00 0.00 0.00 3.10
255 265 2.758736 ACCACAGTCAATCTCTCTGC 57.241 50.000 0.00 0.00 33.12 4.26
370 388 2.092592 GGGAAGTTGACAATATCCCCGT 60.093 50.000 22.09 0.00 43.30 5.28
465 2240 2.202676 CGGCGAAGTCAGAGCTCC 60.203 66.667 10.93 0.00 0.00 4.70
474 2249 4.180946 CAGAGCTCCCCGTCGACG 62.181 72.222 30.33 30.33 39.44 5.12
525 2308 2.591923 TGCTACCAAAATGCTCACCAA 58.408 42.857 0.00 0.00 0.00 3.67
526 2309 2.961741 TGCTACCAAAATGCTCACCAAA 59.038 40.909 0.00 0.00 0.00 3.28
527 2310 3.386078 TGCTACCAAAATGCTCACCAAAA 59.614 39.130 0.00 0.00 0.00 2.44
614 6226 2.027625 GCGTACAGCCGTCAAAGCT 61.028 57.895 0.00 0.00 42.70 3.74
615 6227 1.566018 GCGTACAGCCGTCAAAGCTT 61.566 55.000 0.00 0.00 38.95 3.74
616 6228 0.163788 CGTACAGCCGTCAAAGCTTG 59.836 55.000 0.00 0.00 38.95 4.01
617 6229 1.226746 GTACAGCCGTCAAAGCTTGT 58.773 50.000 0.00 0.00 38.95 3.16
618 6230 1.194772 GTACAGCCGTCAAAGCTTGTC 59.805 52.381 0.00 0.00 38.95 3.18
619 6231 1.205064 CAGCCGTCAAAGCTTGTCG 59.795 57.895 0.00 5.47 38.95 4.35
623 6235 2.900528 CGTCAAAGCTTGTCGGTCT 58.099 52.632 0.00 0.00 38.28 3.85
624 6236 0.784778 CGTCAAAGCTTGTCGGTCTC 59.215 55.000 0.00 0.00 38.28 3.36
625 6237 1.603172 CGTCAAAGCTTGTCGGTCTCT 60.603 52.381 0.00 0.00 38.28 3.10
626 6238 2.062519 GTCAAAGCTTGTCGGTCTCTC 58.937 52.381 0.00 0.00 0.00 3.20
627 6239 1.063806 CAAAGCTTGTCGGTCTCTCG 58.936 55.000 0.00 0.00 0.00 4.04
628 6240 0.038159 AAAGCTTGTCGGTCTCTCGG 60.038 55.000 0.00 0.00 0.00 4.63
629 6241 1.878656 AAGCTTGTCGGTCTCTCGGG 61.879 60.000 0.00 0.00 0.00 5.14
630 6242 2.182030 CTTGTCGGTCTCTCGGGC 59.818 66.667 0.00 0.00 0.00 6.13
631 6243 2.282958 TTGTCGGTCTCTCGGGCT 60.283 61.111 0.00 0.00 0.00 5.19
632 6244 2.272918 CTTGTCGGTCTCTCGGGCTC 62.273 65.000 0.00 0.00 0.00 4.70
633 6245 3.878519 GTCGGTCTCTCGGGCTCG 61.879 72.222 0.00 0.00 37.82 5.03
636 6248 3.894947 GGTCTCTCGGGCTCGCTC 61.895 72.222 0.00 0.00 36.13 5.03
637 6249 4.244802 GTCTCTCGGGCTCGCTCG 62.245 72.222 0.00 4.51 42.03 5.03
719 6331 2.615912 CAAATCCGGCTCCTCTCAAATC 59.384 50.000 0.00 0.00 0.00 2.17
773 6392 1.000486 TCTCCTCTCCCCCGTCTTG 60.000 63.158 0.00 0.00 0.00 3.02
844 6463 1.429148 CGCTAAAACCCTAGCAGGCG 61.429 60.000 3.73 0.00 43.84 5.52
990 6612 0.163788 CGATTGCAGTTCGTGTGTCC 59.836 55.000 11.69 0.00 32.08 4.02
1226 6864 2.816958 AAGCTCGTCATGCTGCGG 60.817 61.111 0.00 0.00 41.03 5.69
1268 6906 3.460648 GCCTCAGCCGTAGTTTCAT 57.539 52.632 0.00 0.00 0.00 2.57
1269 6907 1.739067 GCCTCAGCCGTAGTTTCATT 58.261 50.000 0.00 0.00 0.00 2.57
1270 6908 2.901249 GCCTCAGCCGTAGTTTCATTA 58.099 47.619 0.00 0.00 0.00 1.90
1271 6909 2.866762 GCCTCAGCCGTAGTTTCATTAG 59.133 50.000 0.00 0.00 0.00 1.73
1272 6910 3.458189 CCTCAGCCGTAGTTTCATTAGG 58.542 50.000 0.00 0.00 0.00 2.69
1273 6911 3.118738 CCTCAGCCGTAGTTTCATTAGGT 60.119 47.826 0.00 0.00 0.00 3.08
1274 6912 3.857052 TCAGCCGTAGTTTCATTAGGTG 58.143 45.455 0.00 0.00 0.00 4.00
1276 6914 2.835764 AGCCGTAGTTTCATTAGGTGGA 59.164 45.455 0.00 0.00 0.00 4.02
1277 6915 3.454812 AGCCGTAGTTTCATTAGGTGGAT 59.545 43.478 0.00 0.00 0.00 3.41
1278 6916 3.560068 GCCGTAGTTTCATTAGGTGGATG 59.440 47.826 0.00 0.00 0.00 3.51
1280 6918 4.141801 CCGTAGTTTCATTAGGTGGATGGA 60.142 45.833 0.00 0.00 0.00 3.41
1281 6919 5.454755 CCGTAGTTTCATTAGGTGGATGGAT 60.455 44.000 0.00 0.00 0.00 3.41
1282 6920 5.466728 CGTAGTTTCATTAGGTGGATGGATG 59.533 44.000 0.00 0.00 0.00 3.51
1283 6921 4.210331 AGTTTCATTAGGTGGATGGATGC 58.790 43.478 0.00 0.00 0.00 3.91
1284 6922 2.549064 TCATTAGGTGGATGGATGCG 57.451 50.000 0.00 0.00 0.00 4.73
1285 6923 0.877071 CATTAGGTGGATGGATGCGC 59.123 55.000 0.00 0.00 0.00 6.09
1286 6924 0.603707 ATTAGGTGGATGGATGCGCG 60.604 55.000 0.00 0.00 0.00 6.86
1287 6925 3.807631 TAGGTGGATGGATGCGCGC 62.808 63.158 27.26 27.26 0.00 6.86
1289 6927 3.204827 GTGGATGGATGCGCGCTT 61.205 61.111 33.29 27.00 0.00 4.68
1438 7076 5.548056 TGAGGTAATCTTCTTCTTGGACCTT 59.452 40.000 0.00 0.00 36.20 3.50
1446 7084 2.026262 TCTTCTTGGACCTTATGTGGGC 60.026 50.000 0.00 0.00 0.00 5.36
1833 7472 8.213679 TGATTGCTTTTCTATAGGTAATCAGCT 58.786 33.333 12.72 0.00 36.45 4.24
1901 7540 4.079253 TGGCCTGTTTTCATTCCTTCTAC 58.921 43.478 3.32 0.00 0.00 2.59
1937 7576 9.998106 GGGTTGCTCTTCTCTAATATAACATTA 57.002 33.333 0.00 0.00 0.00 1.90
1954 7593 4.406456 ACATTATGGGTTCTTGCTTCACA 58.594 39.130 0.00 0.00 0.00 3.58
1984 7623 5.454966 ACCAACCTAAATGACCAAGAGTTT 58.545 37.500 0.00 0.00 0.00 2.66
2024 7663 9.029243 TGGCTTTTCAAAAATATTATATGCACG 57.971 29.630 0.00 0.00 0.00 5.34
2025 7664 9.030301 GGCTTTTCAAAAATATTATATGCACGT 57.970 29.630 0.00 0.00 0.00 4.49
2098 7739 9.593134 GAGATCATCACACATTAGAAAGTTAGT 57.407 33.333 0.00 0.00 0.00 2.24
2101 7742 8.322906 TCATCACACATTAGAAAGTTAGTTGG 57.677 34.615 0.00 0.00 0.00 3.77
2106 7747 5.123979 CACATTAGAAAGTTAGTTGGCCCTC 59.876 44.000 0.00 0.00 0.00 4.30
2179 7828 8.034804 GGTTTAGTTGCATCCATTTATCAGTTT 58.965 33.333 0.00 0.00 0.00 2.66
2180 7829 9.423061 GTTTAGTTGCATCCATTTATCAGTTTT 57.577 29.630 0.00 0.00 0.00 2.43
2209 7861 1.243902 TGGGCCTTGAATTGTTCGTC 58.756 50.000 4.53 0.00 0.00 4.20
2242 7894 8.579850 ACATTCTTGGACATAATGTGTATGTT 57.420 30.769 10.78 0.00 42.36 2.71
2253 7905 8.811017 ACATAATGTGTATGTTTTCCCATGAAA 58.189 29.630 0.00 0.00 39.91 2.69
2296 7952 4.939052 TTTTATTGTTCGGGCCTTTCAA 57.061 36.364 0.84 4.28 0.00 2.69
3156 8812 2.512692 TTATGATGGTTGCTGCCAGT 57.487 45.000 0.00 0.00 42.47 4.00
3205 8862 2.693074 TCAAGCAGTTCCCCTGTTTTTC 59.307 45.455 0.00 0.00 41.27 2.29
3395 9053 7.750229 TGCTTCCATCCATAATAGATTTCAC 57.250 36.000 0.00 0.00 0.00 3.18
3396 9054 7.520798 TGCTTCCATCCATAATAGATTTCACT 58.479 34.615 0.00 0.00 0.00 3.41
3429 9087 6.857964 GGTTTCTCAAGTGAATGTTGTATGTG 59.142 38.462 0.00 0.00 0.00 3.21
3489 9147 4.518970 TCTGAAAGCCGCTTATTTCTGTTT 59.481 37.500 5.94 0.00 36.57 2.83
3764 9422 7.863666 TGCAATTTTCCTTCACATTTTTCATC 58.136 30.769 0.00 0.00 0.00 2.92
3855 9514 5.506317 GCTGCATATGGACAGGTTTGTATTC 60.506 44.000 4.56 0.00 37.76 1.75
3876 9535 5.477607 TCTTTCAAGTCGTCCCAATTCTA 57.522 39.130 0.00 0.00 0.00 2.10
3877 9536 6.049955 TCTTTCAAGTCGTCCCAATTCTAT 57.950 37.500 0.00 0.00 0.00 1.98
3879 9538 7.617225 TCTTTCAAGTCGTCCCAATTCTATAA 58.383 34.615 0.00 0.00 0.00 0.98
4120 9779 0.607489 ACTTGCCATGCACTCTCCAC 60.607 55.000 0.00 0.00 38.71 4.02
4130 9789 1.003866 GCACTCTCCACGTTGTTCAAC 60.004 52.381 5.70 5.70 0.00 3.18
4143 9802 8.450964 CCACGTTGTTCAACTCATAATTATCTT 58.549 33.333 12.74 0.00 0.00 2.40
4275 9934 1.064166 CCCTTGTCCAGATGGCTGATT 60.064 52.381 0.00 0.00 45.17 2.57
4327 9986 2.143876 AAGGTGCTTTGTGGTCACTT 57.856 45.000 2.66 0.00 0.00 3.16
4619 10278 5.011943 GCTTTCACCAGAGATATCTGAGGAT 59.988 44.000 18.91 7.71 39.99 3.24
4664 10323 0.392998 ATGGCACCATCGTCAAGTCC 60.393 55.000 0.00 0.00 29.42 3.85
4700 10359 2.817396 GGCAAGACGCAGGCTCTC 60.817 66.667 0.00 0.00 45.17 3.20
4775 10434 1.900351 CAAGCTCGAGGGATCCACA 59.100 57.895 15.23 0.00 0.00 4.17
4805 10464 4.581309 TTCTTTCTCCCAGATGCAGAAT 57.419 40.909 0.00 0.00 0.00 2.40
4813 10472 6.200852 TCTCCCAGATGCAGAATATATAGCT 58.799 40.000 0.00 0.00 0.00 3.32
4814 10473 7.357471 TCTCCCAGATGCAGAATATATAGCTA 58.643 38.462 0.00 0.00 0.00 3.32
4840 10499 4.437682 TCCTGGAAAAAGTGTGATGACT 57.562 40.909 0.00 0.00 0.00 3.41
4905 10564 0.249238 TTGTTTGCGCCATGACCAAC 60.249 50.000 4.18 0.00 0.00 3.77
5037 10698 8.992073 GTGGATTCTTTTGCAATTTTATGAGTT 58.008 29.630 0.00 0.00 0.00 3.01
5207 10868 7.281040 AGACCAGCCAAATGTGAATTATATG 57.719 36.000 0.00 0.00 0.00 1.78
5213 10901 9.368674 CAGCCAAATGTGAATTATATGTGAAAA 57.631 29.630 0.00 0.00 0.00 2.29
5309 10997 6.296803 GGTAGTATAACCTTGAAATCCAGGG 58.703 44.000 5.62 0.00 46.60 4.45
5310 10998 6.100714 GGTAGTATAACCTTGAAATCCAGGGA 59.899 42.308 5.62 0.00 44.20 4.20
5311 10999 6.253946 AGTATAACCTTGAAATCCAGGGAG 57.746 41.667 5.62 0.00 44.20 4.30
5312 11000 5.731678 AGTATAACCTTGAAATCCAGGGAGT 59.268 40.000 5.62 0.00 44.20 3.85
5313 11001 6.906901 AGTATAACCTTGAAATCCAGGGAGTA 59.093 38.462 5.62 0.00 44.20 2.59
5314 11002 6.848562 ATAACCTTGAAATCCAGGGAGTAT 57.151 37.500 5.62 0.00 44.20 2.12
5315 11003 7.947782 ATAACCTTGAAATCCAGGGAGTATA 57.052 36.000 5.62 0.00 44.20 1.47
5316 11004 6.652205 AACCTTGAAATCCAGGGAGTATAA 57.348 37.500 5.62 0.00 44.20 0.98
5317 11005 6.002653 ACCTTGAAATCCAGGGAGTATAAC 57.997 41.667 5.62 0.00 44.20 1.89
5318 11006 5.731678 ACCTTGAAATCCAGGGAGTATAACT 59.268 40.000 5.62 0.00 44.20 2.24
5319 11007 6.217693 ACCTTGAAATCCAGGGAGTATAACTT 59.782 38.462 5.62 0.00 44.20 2.66
5320 11008 7.119387 CCTTGAAATCCAGGGAGTATAACTTT 58.881 38.462 0.00 0.00 44.20 2.66
5321 11009 7.067494 CCTTGAAATCCAGGGAGTATAACTTTG 59.933 40.741 0.00 0.00 44.20 2.77
5322 11010 7.265599 TGAAATCCAGGGAGTATAACTTTGA 57.734 36.000 0.00 0.00 0.00 2.69
5323 11011 7.695055 TGAAATCCAGGGAGTATAACTTTGAA 58.305 34.615 0.00 0.00 0.00 2.69
5324 11012 8.167392 TGAAATCCAGGGAGTATAACTTTGAAA 58.833 33.333 0.00 0.00 0.00 2.69
5325 11013 8.950007 AAATCCAGGGAGTATAACTTTGAAAA 57.050 30.769 0.00 0.00 0.00 2.29
5326 11014 8.950007 AATCCAGGGAGTATAACTTTGAAAAA 57.050 30.769 0.00 0.00 0.00 1.94
5327 11015 9.547279 AATCCAGGGAGTATAACTTTGAAAAAT 57.453 29.630 0.00 0.00 0.00 1.82
5328 11016 8.575649 TCCAGGGAGTATAACTTTGAAAAATC 57.424 34.615 0.00 0.00 0.00 2.17
5329 11017 7.614192 TCCAGGGAGTATAACTTTGAAAAATCC 59.386 37.037 0.00 0.00 0.00 3.01
5330 11018 7.396055 CCAGGGAGTATAACTTTGAAAAATCCA 59.604 37.037 0.00 0.00 0.00 3.41
5331 11019 8.971073 CAGGGAGTATAACTTTGAAAAATCCAT 58.029 33.333 0.00 0.00 0.00 3.41
5332 11020 9.190317 AGGGAGTATAACTTTGAAAAATCCATC 57.810 33.333 0.00 0.00 0.00 3.51
5333 11021 8.414003 GGGAGTATAACTTTGAAAAATCCATCC 58.586 37.037 0.00 0.00 0.00 3.51
5334 11022 8.129211 GGAGTATAACTTTGAAAAATCCATCCG 58.871 37.037 0.00 0.00 0.00 4.18
5335 11023 8.801882 AGTATAACTTTGAAAAATCCATCCGA 57.198 30.769 0.00 0.00 0.00 4.55
5336 11024 8.893727 AGTATAACTTTGAAAAATCCATCCGAG 58.106 33.333 0.00 0.00 0.00 4.63
5337 11025 5.391312 AACTTTGAAAAATCCATCCGAGG 57.609 39.130 0.00 0.00 0.00 4.63
5338 11026 4.662278 ACTTTGAAAAATCCATCCGAGGA 58.338 39.130 0.00 0.00 43.01 3.71
5339 11027 4.459337 ACTTTGAAAAATCCATCCGAGGAC 59.541 41.667 0.00 0.00 41.30 3.85
5340 11028 2.627945 TGAAAAATCCATCCGAGGACG 58.372 47.619 0.00 0.00 41.30 4.79
5341 11029 2.235155 TGAAAAATCCATCCGAGGACGA 59.765 45.455 0.00 0.00 41.30 4.20
5342 11030 3.118408 TGAAAAATCCATCCGAGGACGAT 60.118 43.478 0.00 0.00 41.30 3.73
5343 11031 4.100344 TGAAAAATCCATCCGAGGACGATA 59.900 41.667 0.00 0.00 41.30 2.92
5344 11032 4.682778 AAAATCCATCCGAGGACGATAA 57.317 40.909 0.00 0.00 41.30 1.75
5345 11033 3.944055 AATCCATCCGAGGACGATAAG 57.056 47.619 0.00 0.00 41.30 1.73
5346 11034 1.617322 TCCATCCGAGGACGATAAGG 58.383 55.000 0.00 0.00 42.66 2.69
5347 11035 0.603569 CCATCCGAGGACGATAAGGG 59.396 60.000 0.00 0.00 42.66 3.95
5348 11036 0.603569 CATCCGAGGACGATAAGGGG 59.396 60.000 0.00 0.00 42.66 4.79
5349 11037 0.187851 ATCCGAGGACGATAAGGGGT 59.812 55.000 0.00 0.00 42.66 4.95
5350 11038 0.846015 TCCGAGGACGATAAGGGGTA 59.154 55.000 0.00 0.00 42.66 3.69
5351 11039 1.202855 TCCGAGGACGATAAGGGGTAG 60.203 57.143 0.00 0.00 42.66 3.18
5355 11043 3.498334 GAGGACGATAAGGGGTAGTCAT 58.502 50.000 0.00 0.00 33.84 3.06
5388 11076 2.203394 CAGGTTGCCTGTGCCTGT 60.203 61.111 6.99 0.00 45.82 4.00
5389 11077 2.203394 AGGTTGCCTGTGCCTGTG 60.203 61.111 0.00 0.00 36.33 3.66
5390 11078 3.297620 GGTTGCCTGTGCCTGTGG 61.298 66.667 0.00 0.00 36.33 4.17
5406 11094 4.032653 GGCTGCAATTTGCCCCTA 57.967 55.556 18.27 0.00 44.23 3.53
5445 11133 2.677836 TCCATTTACGATGACTGCTTGC 59.322 45.455 0.00 0.00 0.00 4.01
5484 11175 3.827625 AGAAGATGAAGACGAGACAACG 58.172 45.455 0.00 0.00 39.31 4.10
5493 11184 5.118664 TGAAGACGAGACAACGATTTCAATC 59.881 40.000 0.00 0.00 36.82 2.67
5516 11207 3.248024 ACCTAAATGGACCTGTCACTGA 58.752 45.455 0.00 0.00 39.71 3.41
5591 11283 5.774690 ACTCTGGGAACAAAATATTGCTGAA 59.225 36.000 5.11 0.00 42.06 3.02
5613 11305 3.399330 CCTAAAAGGTTCTCTCGTTGCA 58.601 45.455 0.00 0.00 0.00 4.08
5635 11327 7.298507 GCAAAATGCAATGTTGTAGATTCAT 57.701 32.000 0.00 0.00 43.61 2.57
5636 11328 7.745015 GCAAAATGCAATGTTGTAGATTCATT 58.255 30.769 0.00 0.00 43.61 2.57
5637 11329 8.231837 GCAAAATGCAATGTTGTAGATTCATTT 58.768 29.630 0.00 0.00 43.61 2.32
5748 12380 8.795842 AATAATTGTATCACCGGTAAAGAACA 57.204 30.769 6.87 4.98 0.00 3.18
5749 12381 8.795842 ATAATTGTATCACCGGTAAAGAACAA 57.204 30.769 6.87 14.06 0.00 2.83
5752 12384 5.366460 TGTATCACCGGTAAAGAACAACAA 58.634 37.500 6.87 0.00 0.00 2.83
5755 12387 3.377798 TCACCGGTAAAGAACAACAAACC 59.622 43.478 6.87 0.00 0.00 3.27
5769 12401 3.733443 ACAAACCAAAACTGGATCAGC 57.267 42.857 0.00 0.00 34.37 4.26
5771 12403 3.068590 ACAAACCAAAACTGGATCAGCAG 59.931 43.478 0.00 0.00 34.37 4.24
5775 12407 2.095567 CCAAAACTGGATCAGCAGAACG 60.096 50.000 6.04 0.00 34.37 3.95
5776 12408 2.549754 CAAAACTGGATCAGCAGAACGT 59.450 45.455 6.04 0.00 34.37 3.99
5797 12429 0.883833 CCAAAAGGATGAAGCAGCGT 59.116 50.000 0.00 0.00 0.00 5.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 4.588951 TCCAAGATAATCTGTCATAGGCGT 59.411 41.667 0.00 0.00 0.00 5.68
23 24 7.861629 TCAATTGTACCTCCAAGATAATCTGT 58.138 34.615 5.13 0.00 0.00 3.41
24 25 8.616076 GTTCAATTGTACCTCCAAGATAATCTG 58.384 37.037 5.13 0.00 0.00 2.90
55 59 4.585879 TCCAAATAGCAAAGTCACTACCC 58.414 43.478 0.00 0.00 0.00 3.69
59 63 4.524328 CCCTTTCCAAATAGCAAAGTCACT 59.476 41.667 0.00 0.00 0.00 3.41
444 474 2.182030 CTCTGACTTCGCCGGGAC 59.818 66.667 2.18 0.00 0.00 4.46
465 2240 2.479650 GTGACTCTCGTCGACGGG 59.520 66.667 35.05 33.38 43.21 5.28
614 6226 2.282958 AGCCCGAGAGACCGACAA 60.283 61.111 0.00 0.00 0.00 3.18
615 6227 2.750637 GAGCCCGAGAGACCGACA 60.751 66.667 0.00 0.00 0.00 4.35
616 6228 3.878519 CGAGCCCGAGAGACCGAC 61.879 72.222 0.00 0.00 38.22 4.79
619 6231 3.894947 GAGCGAGCCCGAGAGACC 61.895 72.222 0.00 0.00 38.22 3.85
620 6232 4.244802 CGAGCGAGCCCGAGAGAC 62.245 72.222 0.00 0.00 38.22 3.36
641 6253 2.672996 CTGTTTGACGGGGGCAGG 60.673 66.667 0.00 0.00 0.00 4.85
719 6331 3.861797 CGGATGGAGAACCGGGGG 61.862 72.222 6.32 0.00 44.59 5.40
773 6392 0.812811 GGGGGATCGCTCGGTAAAAC 60.813 60.000 9.90 0.00 0.00 2.43
844 6463 2.433146 GGGGAGGAGCCGTACCTTC 61.433 68.421 0.00 0.00 37.93 3.46
980 6602 3.818121 CTTGCCCCGGACACACGAA 62.818 63.158 0.73 0.00 35.47 3.85
983 6605 3.268103 ATCCTTGCCCCGGACACAC 62.268 63.158 0.73 0.00 32.41 3.82
986 6608 3.727258 CCATCCTTGCCCCGGACA 61.727 66.667 0.73 0.00 32.41 4.02
1226 6864 4.081050 GGCACCTGGTTCTTGGTC 57.919 61.111 0.00 0.00 33.75 4.02
1256 6894 3.255969 TCCACCTAATGAAACTACGGC 57.744 47.619 0.00 0.00 0.00 5.68
1261 6899 4.210331 GCATCCATCCACCTAATGAAACT 58.790 43.478 0.00 0.00 0.00 2.66
1264 6902 2.849942 CGCATCCATCCACCTAATGAA 58.150 47.619 0.00 0.00 0.00 2.57
1265 6903 1.543208 GCGCATCCATCCACCTAATGA 60.543 52.381 0.30 0.00 0.00 2.57
1267 6905 0.603707 CGCGCATCCATCCACCTAAT 60.604 55.000 8.75 0.00 0.00 1.73
1268 6906 1.227527 CGCGCATCCATCCACCTAA 60.228 57.895 8.75 0.00 0.00 2.69
1269 6907 2.421314 CGCGCATCCATCCACCTA 59.579 61.111 8.75 0.00 0.00 3.08
1272 6910 3.173390 GAAGCGCGCATCCATCCAC 62.173 63.158 35.10 3.10 0.00 4.02
1273 6911 2.874648 AAGAAGCGCGCATCCATCCA 62.875 55.000 35.10 0.00 0.00 3.41
1274 6912 2.182842 AAGAAGCGCGCATCCATCC 61.183 57.895 35.10 9.06 0.00 3.51
1276 6914 3.104766 CAAGAAGCGCGCATCCAT 58.895 55.556 35.10 19.69 0.00 3.41
1277 6915 3.803082 GCAAGAAGCGCGCATCCA 61.803 61.111 35.10 0.00 0.00 3.41
1286 6924 3.149436 TCACACAAAACTGCAAGAAGC 57.851 42.857 0.00 0.00 45.96 3.86
1287 6925 5.104374 ACAATCACACAAAACTGCAAGAAG 58.896 37.500 0.00 0.00 37.43 2.85
1288 6926 5.070770 ACAATCACACAAAACTGCAAGAA 57.929 34.783 0.00 0.00 37.43 2.52
1289 6927 4.717233 ACAATCACACAAAACTGCAAGA 57.283 36.364 0.00 0.00 37.43 3.02
1438 7076 1.765904 TCTTTAGGATGCGCCCACATA 59.234 47.619 4.18 0.00 37.37 2.29
1446 7084 6.261118 CAAGAGGAAAATTCTTTAGGATGCG 58.739 40.000 0.00 0.00 32.75 4.73
1833 7472 8.791675 TCATAGATTACAGAAATGCACAAAACA 58.208 29.630 0.00 0.00 0.00 2.83
1901 7540 3.007398 AGAAGAGCAACCCACACTCTAAG 59.993 47.826 0.00 0.00 39.84 2.18
1937 7576 2.664402 ACTGTGAAGCAAGAACCCAT 57.336 45.000 0.00 0.00 0.00 4.00
1954 7593 9.220906 TCTTGGTCATTTAGGTTGGTATATACT 57.779 33.333 12.54 0.00 0.00 2.12
1984 7623 5.911752 TGAAAAGCCAGCTGTTCATTTTTA 58.088 33.333 19.09 7.88 43.19 1.52
2024 7663 5.874810 TCTTGCATCAGTACCTCATTACAAC 59.125 40.000 0.00 0.00 0.00 3.32
2025 7664 6.048732 TCTTGCATCAGTACCTCATTACAA 57.951 37.500 0.00 0.00 0.00 2.41
2098 7739 0.472471 AAGTTCTGAACGAGGGCCAA 59.528 50.000 14.35 0.00 36.23 4.52
2101 7742 1.878953 TCAAAGTTCTGAACGAGGGC 58.121 50.000 14.35 0.00 36.23 5.19
2106 7747 6.673316 GCTTATAGGCTTCAAAGTTCTGAACG 60.673 42.308 14.35 1.61 36.23 3.95
2179 7828 5.565455 ATTCAAGGCCCAAAAGATTCAAA 57.435 34.783 0.00 0.00 0.00 2.69
2180 7829 5.163216 ACAATTCAAGGCCCAAAAGATTCAA 60.163 36.000 0.00 0.00 0.00 2.69
2209 7861 9.208022 ACATTATGTCCAAGAATGTATATCACG 57.792 33.333 8.40 0.00 40.97 4.35
2242 7894 3.195396 GCAAGCACCTATTTCATGGGAAA 59.805 43.478 0.00 0.00 46.36 3.13
2253 7905 7.651027 AAAATAGATTTGAGCAAGCACCTAT 57.349 32.000 0.00 0.00 0.00 2.57
2323 7979 0.953471 TACATGGTTGCTGGCACGAC 60.953 55.000 0.00 0.00 0.00 4.34
2762 8418 8.284945 ACTAAGAAGAAAATAAGCATGCATGA 57.715 30.769 30.64 10.12 0.00 3.07
2792 8448 4.676546 TGAAAAACACATCGTCAATTGCA 58.323 34.783 0.00 0.00 0.00 4.08
2842 8498 6.658849 TGTGCTAGGAAATGGCTAGATTTTA 58.341 36.000 0.00 0.00 36.12 1.52
3205 8862 7.040409 AGGCTCAGGAGTTAAATGTTACAAAAG 60.040 37.037 0.00 0.00 0.00 2.27
3395 9053 8.950210 ACATTCACTTGAGAAACCATAATGTAG 58.050 33.333 0.00 0.00 34.31 2.74
3396 9054 8.862325 ACATTCACTTGAGAAACCATAATGTA 57.138 30.769 0.00 0.00 34.31 2.29
3489 9147 7.175641 GGATTTGTGAAATCTCTGAGGAAGAAA 59.824 37.037 4.59 0.00 45.17 2.52
3855 9514 7.843490 TTATAGAATTGGGACGACTTGAAAG 57.157 36.000 0.00 0.00 0.00 2.62
3877 9536 9.332502 TGAAGCAGTAAAAACTAACAGACATTA 57.667 29.630 0.00 0.00 0.00 1.90
3879 9538 7.801716 TGAAGCAGTAAAAACTAACAGACAT 57.198 32.000 0.00 0.00 0.00 3.06
3961 9620 5.105997 GCCCCATCAGATATAGAAACATTGC 60.106 44.000 0.00 0.00 0.00 3.56
4014 9673 0.329261 CTCCAGGAGGCAATGTTCCA 59.671 55.000 8.88 0.00 35.88 3.53
4120 9779 9.825972 AACAAGATAATTATGAGTTGAACAACG 57.174 29.630 1.78 0.00 45.50 4.10
4143 9802 9.733556 TTTCTGCAGATAAAGGTAAGATAAACA 57.266 29.630 19.04 0.00 0.00 2.83
4286 9945 7.438459 ACCTTTAAATAGTGTATAGCAAGCTCG 59.562 37.037 0.00 0.00 0.00 5.03
4327 9986 7.496346 AATGAATGAACTAAGGTAGGAGTCA 57.504 36.000 0.00 0.00 0.00 3.41
4619 10278 1.207089 CCTAGGTGTTCAAGGATCGCA 59.793 52.381 0.00 0.00 31.64 5.10
4664 10323 0.236711 CACTCGCCTCAAACAGCTTG 59.763 55.000 0.00 0.00 36.25 4.01
4700 10359 1.621301 CCTCGCTCTCAAACTGCACG 61.621 60.000 0.00 0.00 0.00 5.34
4775 10434 6.548993 GCATCTGGGAGAAAGAAATCCTAATT 59.451 38.462 0.00 0.00 35.80 1.40
4813 10472 7.174946 GTCATCACACTTTTTCCAGGAAGAATA 59.825 37.037 5.63 0.00 0.00 1.75
4814 10473 6.015940 GTCATCACACTTTTTCCAGGAAGAAT 60.016 38.462 5.63 0.00 0.00 2.40
4905 10564 3.436704 ACACAAGATACAGGCAACAATCG 59.563 43.478 0.00 0.00 41.41 3.34
5037 10698 6.211584 AGTCATTACTAGGAAGAGAAGCAACA 59.788 38.462 0.00 0.00 32.84 3.33
5097 10758 8.842358 TCCCTCCATAAACTAATATAAAAGCG 57.158 34.615 0.00 0.00 0.00 4.68
5287 10975 6.906901 ACTCCCTGGATTTCAAGGTTATACTA 59.093 38.462 0.00 0.00 0.00 1.82
5307 10995 8.414003 GGATGGATTTTTCAAAGTTATACTCCC 58.586 37.037 0.00 0.00 0.00 4.30
5308 10996 8.129211 CGGATGGATTTTTCAAAGTTATACTCC 58.871 37.037 0.00 0.00 0.00 3.85
5309 10997 8.889717 TCGGATGGATTTTTCAAAGTTATACTC 58.110 33.333 0.00 0.00 0.00 2.59
5310 10998 8.801882 TCGGATGGATTTTTCAAAGTTATACT 57.198 30.769 0.00 0.00 0.00 2.12
5311 10999 8.129211 CCTCGGATGGATTTTTCAAAGTTATAC 58.871 37.037 0.00 0.00 0.00 1.47
5312 11000 8.050325 TCCTCGGATGGATTTTTCAAAGTTATA 58.950 33.333 0.00 0.00 0.00 0.98
5313 11001 6.889722 TCCTCGGATGGATTTTTCAAAGTTAT 59.110 34.615 0.00 0.00 0.00 1.89
5314 11002 6.150474 GTCCTCGGATGGATTTTTCAAAGTTA 59.850 38.462 0.00 0.00 38.52 2.24
5315 11003 5.048013 GTCCTCGGATGGATTTTTCAAAGTT 60.048 40.000 0.00 0.00 38.52 2.66
5316 11004 4.459337 GTCCTCGGATGGATTTTTCAAAGT 59.541 41.667 0.00 0.00 38.52 2.66
5317 11005 4.437390 CGTCCTCGGATGGATTTTTCAAAG 60.437 45.833 0.00 0.00 38.52 2.77
5318 11006 3.438781 CGTCCTCGGATGGATTTTTCAAA 59.561 43.478 0.00 0.00 38.52 2.69
5319 11007 3.006940 CGTCCTCGGATGGATTTTTCAA 58.993 45.455 0.00 0.00 38.52 2.69
5320 11008 2.235155 TCGTCCTCGGATGGATTTTTCA 59.765 45.455 5.39 0.00 38.52 2.69
5321 11009 2.901249 TCGTCCTCGGATGGATTTTTC 58.099 47.619 5.39 0.00 38.52 2.29
5322 11010 3.560636 ATCGTCCTCGGATGGATTTTT 57.439 42.857 5.39 0.00 38.52 1.94
5323 11011 4.503296 CCTTATCGTCCTCGGATGGATTTT 60.503 45.833 5.39 0.00 38.52 1.82
5324 11012 3.006967 CCTTATCGTCCTCGGATGGATTT 59.993 47.826 5.39 0.00 38.52 2.17
5325 11013 2.563179 CCTTATCGTCCTCGGATGGATT 59.437 50.000 5.39 0.00 38.52 3.01
5326 11014 2.171840 CCTTATCGTCCTCGGATGGAT 58.828 52.381 5.39 6.53 38.52 3.41
5327 11015 1.617322 CCTTATCGTCCTCGGATGGA 58.383 55.000 5.39 0.00 37.69 3.41
5328 11016 0.603569 CCCTTATCGTCCTCGGATGG 59.396 60.000 5.39 0.00 37.69 3.51
5329 11017 0.603569 CCCCTTATCGTCCTCGGATG 59.396 60.000 0.00 0.00 37.69 3.51
5330 11018 0.187851 ACCCCTTATCGTCCTCGGAT 59.812 55.000 0.00 0.00 37.69 4.18
5331 11019 0.846015 TACCCCTTATCGTCCTCGGA 59.154 55.000 0.00 0.00 37.69 4.55
5332 11020 1.245732 CTACCCCTTATCGTCCTCGG 58.754 60.000 0.00 0.00 37.69 4.63
5333 11021 1.878734 GACTACCCCTTATCGTCCTCG 59.121 57.143 0.00 0.00 38.55 4.63
5334 11022 2.941480 TGACTACCCCTTATCGTCCTC 58.059 52.381 0.00 0.00 0.00 3.71
5335 11023 3.614568 ATGACTACCCCTTATCGTCCT 57.385 47.619 0.00 0.00 0.00 3.85
5336 11024 3.006644 GGAATGACTACCCCTTATCGTCC 59.993 52.174 0.00 0.00 0.00 4.79
5337 11025 3.006644 GGGAATGACTACCCCTTATCGTC 59.993 52.174 0.00 0.00 40.19 4.20
5338 11026 2.970640 GGGAATGACTACCCCTTATCGT 59.029 50.000 0.00 0.00 40.19 3.73
5339 11027 2.969950 TGGGAATGACTACCCCTTATCG 59.030 50.000 0.00 0.00 45.01 2.92
5340 11028 3.244596 GCTGGGAATGACTACCCCTTATC 60.245 52.174 0.00 0.00 45.01 1.75
5341 11029 2.711547 GCTGGGAATGACTACCCCTTAT 59.288 50.000 0.00 0.00 45.01 1.73
5342 11030 2.124411 GCTGGGAATGACTACCCCTTA 58.876 52.381 0.00 0.00 45.01 2.69
5343 11031 0.919710 GCTGGGAATGACTACCCCTT 59.080 55.000 0.00 0.00 45.01 3.95
5344 11032 1.338136 CGCTGGGAATGACTACCCCT 61.338 60.000 0.00 0.00 45.01 4.79
5345 11033 1.146263 CGCTGGGAATGACTACCCC 59.854 63.158 0.00 0.00 45.01 4.95
5346 11034 0.105039 CTCGCTGGGAATGACTACCC 59.895 60.000 0.00 0.00 45.74 3.69
5347 11035 0.105039 CCTCGCTGGGAATGACTACC 59.895 60.000 0.00 0.00 0.00 3.18
5348 11036 1.112113 TCCTCGCTGGGAATGACTAC 58.888 55.000 0.00 0.00 36.20 2.73
5349 11037 1.688735 CATCCTCGCTGGGAATGACTA 59.311 52.381 1.36 0.00 39.02 2.59
5350 11038 0.467384 CATCCTCGCTGGGAATGACT 59.533 55.000 1.36 0.00 39.02 3.41
5351 11039 0.465705 TCATCCTCGCTGGGAATGAC 59.534 55.000 5.32 0.00 39.02 3.06
5355 11043 1.617018 CCTGTCATCCTCGCTGGGAA 61.617 60.000 0.00 0.00 39.02 3.97
5383 11071 2.030958 GCAAATTGCAGCCACAGGC 61.031 57.895 13.73 0.00 44.26 4.85
5384 11072 4.272100 GCAAATTGCAGCCACAGG 57.728 55.556 13.73 0.00 44.26 4.00
5393 11081 3.430790 GGAACAGAATAGGGGCAAATTGC 60.431 47.826 9.87 9.87 44.08 3.56
5394 11082 3.768757 TGGAACAGAATAGGGGCAAATTG 59.231 43.478 0.00 0.00 0.00 2.32
5395 11083 4.059773 TGGAACAGAATAGGGGCAAATT 57.940 40.909 0.00 0.00 0.00 1.82
5396 11084 3.756082 TGGAACAGAATAGGGGCAAAT 57.244 42.857 0.00 0.00 0.00 2.32
5445 11133 1.000506 TCTTCCTTCGACCAAGTTCGG 59.999 52.381 0.00 0.00 39.58 4.30
5484 11175 5.823045 AGGTCCATTTAGGTCGATTGAAATC 59.177 40.000 0.00 0.00 39.02 2.17
5493 11184 2.233922 AGTGACAGGTCCATTTAGGTCG 59.766 50.000 0.00 0.00 39.02 4.79
5678 12310 7.324178 AGTGTGGAGTTCTTAATCAGTGATAC 58.676 38.462 5.94 0.19 0.00 2.24
5686 12318 6.877611 TTTTGGAGTGTGGAGTTCTTAATC 57.122 37.500 0.00 0.00 0.00 1.75
5689 12321 7.074653 AGTATTTTGGAGTGTGGAGTTCTTA 57.925 36.000 0.00 0.00 0.00 2.10
5730 12362 5.927954 TTGTTGTTCTTTACCGGTGATAC 57.072 39.130 19.93 8.50 0.00 2.24
5735 12367 3.354467 TGGTTTGTTGTTCTTTACCGGT 58.646 40.909 13.98 13.98 0.00 5.28
5748 12380 3.450457 TGCTGATCCAGTTTTGGTTTGTT 59.550 39.130 0.00 0.00 45.26 2.83
5749 12381 3.030291 TGCTGATCCAGTTTTGGTTTGT 58.970 40.909 0.00 0.00 45.26 2.83
5752 12384 3.228188 TCTGCTGATCCAGTTTTGGTT 57.772 42.857 0.00 0.00 45.26 3.67
5755 12387 2.549754 ACGTTCTGCTGATCCAGTTTTG 59.450 45.455 0.00 0.00 33.43 2.44
5769 12401 1.879380 TCATCCTTTTGGCACGTTCTG 59.121 47.619 0.00 0.00 40.12 3.02
5771 12403 2.922335 GCTTCATCCTTTTGGCACGTTC 60.922 50.000 0.00 0.00 40.12 3.95
5775 12407 1.670967 GCTGCTTCATCCTTTTGGCAC 60.671 52.381 0.00 0.00 40.12 5.01
5776 12408 0.604578 GCTGCTTCATCCTTTTGGCA 59.395 50.000 0.00 0.00 40.12 4.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.