AutoCloner

Multiple sequence alignment - TraesCS3D01G372400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3D01G372400	chr3D	100.000	2384	0	0	1	2384	485230736	485233119	0.000000e+00	4403
1	TraesCS3D01G372400	chr3A	93.230	2186	88	21	236	2384	628218756	628220918	0.000000e+00	3162
2	TraesCS3D01G372400	chr3A	88.333	120	7	1	21	140	628218539	628218651	1.150000e-28	137
3	TraesCS3D01G372400	chr3B	92.217	2030	92	27	324	2314	647942544	647944546	0.000000e+00	2813
4	TraesCS3D01G372400	chr3B	89.616	1146	61	23	1203	2314	647968832	647969953	0.000000e+00	1404
5	TraesCS3D01G372400	chr3B	97.778	90	1	1	2295	2384	647969963	647970051	1.140000e-33	154
6	TraesCS3D01G372400	chr3B	83.133	166	11	4	67	232	647942282	647942430	4.130000e-28	135
7	TraesCS3D01G372400	chr1D	85.892	1609	123	57	367	1930	433061883	433060334	0.000000e+00	1618
8	TraesCS3D01G372400	chr1D	85.003	1647	134	64	370	1931	433093973	433092355	0.000000e+00	1568
9	TraesCS3D01G372400	chr1B	82.435	2004	198	83	370	2279	584576398	584574455	0.000000e+00	1609
10	TraesCS3D01G372400	chr1B	84.697	1699	162	47	370	2014	584605131	584603477	0.000000e+00	1609
11	TraesCS3D01G372400	chr1B	82.435	2004	198	87	370	2279	584621759	584619816	0.000000e+00	1609
12	TraesCS3D01G372400	chr1B	84.456	1692	172	49	370	2014	584655558	584653911	0.000000e+00	1583
13	TraesCS3D01G372400	chr1A	88.863	1275	106	18	405	1666	531368312	531367061	0.000000e+00	1535
14	TraesCS3D01G372400	chr1A	83.882	1700	158	71	370	2017	531514474	531512839	0.000000e+00	1515
15	TraesCS3D01G372400	chr1A	86.134	1327	115	42	370	1666	531563303	531562016	0.000000e+00	1367
16	TraesCS3D01G372400	chr1A	79.459	185	15	13	2110	2279	531561642	531561466	2.510000e-20	110
17	TraesCS3D01G372400	chrUn	92.929	495	24	9	1822	2314	250505724	250505239	0.000000e+00	710
18	TraesCS3D01G372400	chrUn	97.802	91	1	1	2294	2384	250505230	250505141	3.170000e-34	156

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3D01G372400	chr3D	485230736	485233119	2383	False	4403.0	4403	100.0000	1	2384	1	chr3D.!!$F1	2383
1	TraesCS3D01G372400	chr3A	628218539	628220918	2379	False	1649.5	3162	90.7815	21	2384	2	chr3A.!!$F1	2363
2	TraesCS3D01G372400	chr3B	647942282	647944546	2264	False	1474.0	2813	87.6750	67	2314	2	chr3B.!!$F1	2247
3	TraesCS3D01G372400	chr3B	647968832	647970051	1219	False	779.0	1404	93.6970	1203	2384	2	chr3B.!!$F2	1181
4	TraesCS3D01G372400	chr1D	433060334	433061883	1549	True	1618.0	1618	85.8920	367	1930	1	chr1D.!!$R1	1563
5	TraesCS3D01G372400	chr1D	433092355	433093973	1618	True	1568.0	1568	85.0030	370	1931	1	chr1D.!!$R2	1561
6	TraesCS3D01G372400	chr1B	584574455	584576398	1943	True	1609.0	1609	82.4350	370	2279	1	chr1B.!!$R1	1909
7	TraesCS3D01G372400	chr1B	584603477	584605131	1654	True	1609.0	1609	84.6970	370	2014	1	chr1B.!!$R2	1644
8	TraesCS3D01G372400	chr1B	584619816	584621759	1943	True	1609.0	1609	82.4350	370	2279	1	chr1B.!!$R3	1909
9	TraesCS3D01G372400	chr1B	584653911	584655558	1647	True	1583.0	1583	84.4560	370	2014	1	chr1B.!!$R4	1644
10	TraesCS3D01G372400	chr1A	531367061	531368312	1251	True	1535.0	1535	88.8630	405	1666	1	chr1A.!!$R1	1261
11	TraesCS3D01G372400	chr1A	531512839	531514474	1635	True	1515.0	1515	83.8820	370	2017	1	chr1A.!!$R2	1647
12	TraesCS3D01G372400	chr1A	531561466	531563303	1837	True	738.5	1367	82.7965	370	2279	2	chr1A.!!$R3	1909
13	TraesCS3D01G372400	chrUn	250505141	250505724	583	True	433.0	710	95.3655	1822	2384	2	chrUn.!!$R1	562

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
226	233	0.251165	AGTTTGGTAGTTGCGGCCAT	60.251	50.0	2.24	0.0	31.71	4.4	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1730	1903	0.243907	TTCACGCTTCTCTCTTCCCG	59.756	55.0	0.0	0.0	0.0	5.14	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
46	47	2.567497	GGGGACGACACGAGGAACA	61.567	63.158	0.00	0.00	0.00	3.18
47	48	1.364901	GGGACGACACGAGGAACAA	59.635	57.895	0.00	0.00	0.00	2.83
50	51	1.129326	GACGACACGAGGAACAACAG	58.871	55.000	0.00	0.00	0.00	3.16
99	100	1.360551	CAGTACCTCGCCGGAGATG	59.639	63.158	8.83	8.85	43.27	2.90
100	101	1.828660	AGTACCTCGCCGGAGATGG	60.829	63.158	8.83	14.51	43.27	3.51
101	102	2.520982	TACCTCGCCGGAGATGGG	60.521	66.667	21.33	17.00	43.27	4.00
105	106	3.233980	TCGCCGGAGATGGGGATG	61.234	66.667	5.05	0.00	45.08	3.51
140	147	2.999355	GGAGAGAGCTGTGACATTGTTC	59.001	50.000	0.00	0.00	0.00	3.18
141	148	3.306641	GGAGAGAGCTGTGACATTGTTCT	60.307	47.826	0.00	0.00	0.00	3.01
142	149	4.081972	GGAGAGAGCTGTGACATTGTTCTA	60.082	45.833	0.00	0.00	0.00	2.10
143	150	5.070770	AGAGAGCTGTGACATTGTTCTAG	57.929	43.478	0.00	0.00	0.00	2.43
144	151	4.081752	AGAGAGCTGTGACATTGTTCTAGG	60.082	45.833	0.00	0.00	0.00	3.02
145	152	3.055530	AGAGCTGTGACATTGTTCTAGGG	60.056	47.826	0.00	0.00	0.00	3.53
146	153	1.740025	GCTGTGACATTGTTCTAGGGC	59.260	52.381	0.00	0.00	0.00	5.19
147	154	2.002586	CTGTGACATTGTTCTAGGGCG	58.997	52.381	0.00	0.00	0.00	6.13
148	155	1.621317	TGTGACATTGTTCTAGGGCGA	59.379	47.619	0.00	0.00	0.00	5.54
149	156	2.037902	TGTGACATTGTTCTAGGGCGAA	59.962	45.455	0.00	0.00	0.00	4.70
150	157	3.270877	GTGACATTGTTCTAGGGCGAAT	58.729	45.455	0.00	0.00	0.00	3.34
179	186	0.540365	CAGGTTGATGGGTGCAGGTT	60.540	55.000	0.00	0.00	0.00	3.50
224	231	0.671796	AAAGTTTGGTAGTTGCGGCC	59.328	50.000	0.00	0.00	0.00	6.13
226	233	0.251165	AGTTTGGTAGTTGCGGCCAT	60.251	50.000	2.24	0.00	31.71	4.40
312	358	5.817296	TGCATGTCTATTGGTGTACATCTTC	59.183	40.000	7.81	0.00	30.32	2.87
315	361	7.012704	GCATGTCTATTGGTGTACATCTTCAAT	59.987	37.037	7.81	12.93	30.32	2.57
316	362	8.896744	CATGTCTATTGGTGTACATCTTCAATT	58.103	33.333	7.81	1.37	30.32	2.32
317	363	8.862325	TGTCTATTGGTGTACATCTTCAATTT	57.138	30.769	7.81	0.00	31.55	1.82
318	364	9.295825	TGTCTATTGGTGTACATCTTCAATTTT	57.704	29.630	7.81	0.00	31.55	1.82
554	616	6.237969	GGTTAGAGCAAAGAATGAATCGAGAC	60.238	42.308	0.00	0.00	0.00	3.36
560	622	5.807520	GCAAAGAATGAATCGAGACTGAGTA	59.192	40.000	0.00	0.00	0.00	2.59
610	696	0.390472	GCAGCTGTACCACTCCACTC	60.390	60.000	16.64	0.00	0.00	3.51
615	701	2.094649	GCTGTACCACTCCACTCAGTAC	60.095	54.545	0.00	0.00	35.08	2.73
1114	1200	2.747855	CCAGGAACTTGAGCGGCC	60.748	66.667	0.00	0.00	34.60	6.13
1368	1464	3.139469	GGGTCGAGGAGGACGGAC	61.139	72.222	0.00	0.00	37.82	4.79
1432	1537	4.752101	GCCTGGCTAATCAGTTGTACATAG	59.248	45.833	12.43	0.00	33.14	2.23
1443	1564	7.132694	TCAGTTGTACATAGATGTTTGCAAG	57.867	36.000	0.00	0.00	41.97	4.01
1447	1568	6.164408	TGTACATAGATGTTTGCAAGTTCG	57.836	37.500	0.00	0.00	41.97	3.95
1448	1569	5.699001	TGTACATAGATGTTTGCAAGTTCGT	59.301	36.000	0.00	0.00	41.97	3.85
1449	1570	5.689383	ACATAGATGTTTGCAAGTTCGTT	57.311	34.783	0.00	0.00	37.90	3.85
1450	1571	6.072112	ACATAGATGTTTGCAAGTTCGTTT	57.928	33.333	0.00	0.00	37.90	3.60
1451	1572	7.197071	ACATAGATGTTTGCAAGTTCGTTTA	57.803	32.000	0.00	0.00	37.90	2.01
1452	1573	7.816640	ACATAGATGTTTGCAAGTTCGTTTAT	58.183	30.769	0.00	0.00	37.90	1.40
1453	1574	8.941977	ACATAGATGTTTGCAAGTTCGTTTATA	58.058	29.630	0.00	0.00	37.90	0.98
1454	1575	9.767684	CATAGATGTTTGCAAGTTCGTTTATAA	57.232	29.630	0.00	0.00	0.00	0.98
1528	1655	2.679996	GCCATTGCCGGGGTTCTT	60.680	61.111	2.18	0.00	0.00	2.52
1616	1743	0.463295	CGATCTGCAGTGGCCAGAAT	60.463	55.000	14.67	0.00	40.13	2.40
1659	1786	0.599558	GAGGAGCAGCAATGCACAAA	59.400	50.000	8.35	0.00	37.25	2.83
1675	1811	3.581755	CACAAACCATCAGATTTGCAGG	58.418	45.455	0.00	0.00	39.03	4.85
1723	1879	4.861210	GCTTGCTAGCTCGACTAAGATTA	58.139	43.478	17.23	0.00	44.27	1.75
1726	1882	6.422400	GCTTGCTAGCTCGACTAAGATTAATT	59.578	38.462	17.23	0.00	44.27	1.40
1730	1903	6.363896	GCTAGCTCGACTAAGATTAATTGGAC	59.636	42.308	7.70	0.00	0.00	4.02
1742	1915	5.425539	AGATTAATTGGACGGGAAGAGAGAA	59.574	40.000	0.00	0.00	0.00	2.87
1743	1916	3.618690	AATTGGACGGGAAGAGAGAAG	57.381	47.619	0.00	0.00	0.00	2.85
1744	1917	0.608640	TTGGACGGGAAGAGAGAAGC	59.391	55.000	0.00	0.00	0.00	3.86
1745	1918	1.139947	GGACGGGAAGAGAGAAGCG	59.860	63.158	0.00	0.00	0.00	4.68
1746	1919	1.596895	GGACGGGAAGAGAGAAGCGT	61.597	60.000	0.00	0.00	0.00	5.07
1791	1980	0.740868	GTGTTGCCATAGCTCGAGCA	60.741	55.000	36.87	23.50	45.16	4.26
1792	1981	0.178767	TGTTGCCATAGCTCGAGCAT	59.821	50.000	36.87	24.57	45.16	3.79
1810	2001	9.658475	CTCGAGCATATGAAGCTACTTATATAC	57.342	37.037	6.97	0.00	43.58	1.47
1811	2002	8.622157	TCGAGCATATGAAGCTACTTATATACC	58.378	37.037	6.97	0.00	43.58	2.73
1812	2003	8.406297	CGAGCATATGAAGCTACTTATATACCA	58.594	37.037	6.97	0.00	43.58	3.25
1820	2019	6.935240	AGCTACTTATATACCAGGCATTCA	57.065	37.500	0.00	0.00	0.00	2.57
1848	2069	2.028130	CCTTGGCCGAGAATGCATC	58.972	57.895	22.68	0.00	0.00	3.91
1849	2070	0.465097	CCTTGGCCGAGAATGCATCT	60.465	55.000	22.68	0.00	42.61	2.90
1850	2071	0.661552	CTTGGCCGAGAATGCATCTG	59.338	55.000	15.76	0.00	38.96	2.90
1950	2173	4.857871	TCTTAAGCGTCATTGAATTCGG	57.142	40.909	0.04	0.00	0.00	4.30
2229	2480	1.314730	TTTTCCGGTTGTTGAGAGGC	58.685	50.000	0.00	0.00	0.00	4.70
2252	2507	6.013689	GCGAGGTTAATTAAGAACGTTTCTG	58.986	40.000	0.46	0.00	40.59	3.02

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
2	3	5.390991	CCTTTAGCTTTGGTCTGAAATCGAC	60.391	44.000	0.00	0.00	0.00	4.20
3	4	4.695455	CCTTTAGCTTTGGTCTGAAATCGA	59.305	41.667	0.00	0.00	0.00	3.59
4	5	4.672801	GCCTTTAGCTTTGGTCTGAAATCG	60.673	45.833	0.00	0.00	38.99	3.34
5	6	4.672801	CGCCTTTAGCTTTGGTCTGAAATC	60.673	45.833	0.00	0.00	40.39	2.17
6	7	3.191371	CGCCTTTAGCTTTGGTCTGAAAT	59.809	43.478	0.00	0.00	40.39	2.17
7	8	2.552315	CGCCTTTAGCTTTGGTCTGAAA	59.448	45.455	0.00	0.00	40.39	2.69
8	9	2.151202	CGCCTTTAGCTTTGGTCTGAA	58.849	47.619	0.00	0.00	40.39	3.02
9	10	1.610624	CCGCCTTTAGCTTTGGTCTGA	60.611	52.381	0.00	0.00	40.39	3.27
10	11	0.804989	CCGCCTTTAGCTTTGGTCTG	59.195	55.000	0.00	0.00	40.39	3.51
11	12	0.322546	CCCGCCTTTAGCTTTGGTCT	60.323	55.000	0.00	0.00	40.39	3.85
12	13	1.313091	CCCCGCCTTTAGCTTTGGTC	61.313	60.000	0.00	0.00	40.39	4.02
13	14	1.304134	CCCCGCCTTTAGCTTTGGT	60.304	57.895	0.00	0.00	40.39	3.67
14	15	1.001393	TCCCCGCCTTTAGCTTTGG	60.001	57.895	0.00	0.00	40.39	3.28
15	16	1.644786	CGTCCCCGCCTTTAGCTTTG	61.645	60.000	0.00	0.00	40.39	2.77
16	17	1.376812	CGTCCCCGCCTTTAGCTTT	60.377	57.895	0.00	0.00	40.39	3.51
17	18	2.267961	CGTCCCCGCCTTTAGCTT	59.732	61.111	0.00	0.00	40.39	3.74
18	19	2.682494	TCGTCCCCGCCTTTAGCT	60.682	61.111	0.00	0.00	40.39	3.32
19	20	2.510918	GTCGTCCCCGCCTTTAGC	60.511	66.667	0.00	0.00	38.52	3.09
38	39	1.135859	GCTCATTGCTGTTGTTCCTCG	60.136	52.381	0.00	0.00	38.95	4.63
46	47	2.680913	GCCGACGCTCATTGCTGTT	61.681	57.895	0.00	0.00	40.11	3.16
47	48	3.121030	GCCGACGCTCATTGCTGT	61.121	61.111	0.00	0.00	40.11	4.40
50	51	4.166011	GTGGCCGACGCTCATTGC	62.166	66.667	0.00	0.00	38.57	3.56
99	100	4.847367	CTTGCAGCCCCCATCCCC	62.847	72.222	0.00	0.00	0.00	4.81
140	147	0.598680	CTTCCTCGCATTCGCCCTAG	60.599	60.000	0.00	0.00	35.26	3.02
141	148	1.441729	CTTCCTCGCATTCGCCCTA	59.558	57.895	0.00	0.00	35.26	3.53
142	149	2.187946	CTTCCTCGCATTCGCCCT	59.812	61.111	0.00	0.00	35.26	5.19
143	150	3.577313	GCTTCCTCGCATTCGCCC	61.577	66.667	0.00	0.00	35.26	6.13
144	151	2.817423	CTGCTTCCTCGCATTCGCC	61.817	63.158	0.00	0.00	39.52	5.54
145	152	2.705826	CTGCTTCCTCGCATTCGC	59.294	61.111	0.00	0.00	39.52	4.70
146	153	1.021390	AACCTGCTTCCTCGCATTCG	61.021	55.000	0.00	0.00	39.52	3.34
147	154	0.449388	CAACCTGCTTCCTCGCATTC	59.551	55.000	0.00	0.00	39.52	2.67
148	155	0.036732	TCAACCTGCTTCCTCGCATT	59.963	50.000	0.00	0.00	39.52	3.56
149	156	0.254178	ATCAACCTGCTTCCTCGCAT	59.746	50.000	0.00	0.00	39.52	4.73
150	157	0.674581	CATCAACCTGCTTCCTCGCA	60.675	55.000	0.00	0.00	38.40	5.10
196	203	6.292114	CGCAACTACCAAACTTTCCAATTTTC	60.292	38.462	0.00	0.00	0.00	2.29
224	231	3.631144	CATACAAGCAAATACCGCCATG	58.369	45.455	0.00	0.00	0.00	3.66
226	233	1.403679	GCATACAAGCAAATACCGCCA	59.596	47.619	0.00	0.00	0.00	5.69
325	371	7.728148	TGGAATAATAAAGTGATGCATGCAAT	58.272	30.769	26.68	13.38	0.00	3.56
554	616	5.732528	GCATGCATGGTGAAAGATTACTCAG	60.733	44.000	27.34	0.00	0.00	3.35
560	622	2.563620	TGTGCATGCATGGTGAAAGATT	59.436	40.909	25.64	0.00	0.00	2.40
610	696	1.588404	CCGCGCAATCAACTAGTACTG	59.412	52.381	8.75	0.00	0.00	2.74
615	701	1.349627	CTGCCGCGCAATCAACTAG	59.650	57.895	8.75	0.00	38.41	2.57
662	748	2.579201	CCGGCATCGAGGTCAAGT	59.421	61.111	1.43	0.00	39.00	3.16
1114	1200	2.125512	CTTCTCCAACGCCTCCGG	60.126	66.667	0.00	0.00	39.22	5.14
1217	1312	1.216444	GTCTCCTGCGCAGACATCA	59.784	57.895	38.06	14.16	40.18	3.07
1368	1464	3.205338	TGTTGATTAGGGATGTGATGCG	58.795	45.455	0.00	0.00	0.00	4.73
1432	1537	8.502161	AACTTATAAACGAACTTGCAAACATC	57.498	30.769	0.00	0.00	0.00	3.06
1443	1564	7.743400	GGTACTGCAAGAAACTTATAAACGAAC	59.257	37.037	0.00	0.00	37.43	3.95
1447	1568	7.330208	TCGAGGTACTGCAAGAAACTTATAAAC	59.670	37.037	0.00	0.00	41.55	2.01
1448	1569	7.330208	GTCGAGGTACTGCAAGAAACTTATAAA	59.670	37.037	0.00	0.00	41.55	1.40
1449	1570	6.810182	GTCGAGGTACTGCAAGAAACTTATAA	59.190	38.462	0.00	0.00	41.55	0.98
1450	1571	6.327934	GTCGAGGTACTGCAAGAAACTTATA	58.672	40.000	0.00	0.00	41.55	0.98
1451	1572	5.169295	GTCGAGGTACTGCAAGAAACTTAT	58.831	41.667	0.00	0.00	41.55	1.73
1452	1573	4.553323	GTCGAGGTACTGCAAGAAACTTA	58.447	43.478	0.00	0.00	41.55	2.24
1453	1574	3.391049	GTCGAGGTACTGCAAGAAACTT	58.609	45.455	0.00	0.00	41.55	2.66
1454	1575	2.607282	CGTCGAGGTACTGCAAGAAACT	60.607	50.000	0.00	0.00	41.55	2.66
1659	1786	3.887716	GCTATTCCTGCAAATCTGATGGT	59.112	43.478	0.00	0.00	0.00	3.55
1708	1864	5.282510	CGTCCAATTAATCTTAGTCGAGCT	58.717	41.667	0.00	0.00	0.00	4.09
1723	1879	2.355209	GCTTCTCTCTTCCCGTCCAATT	60.355	50.000	0.00	0.00	0.00	2.32
1726	1882	1.595993	CGCTTCTCTCTTCCCGTCCA	61.596	60.000	0.00	0.00	0.00	4.02
1730	1903	0.243907	TTCACGCTTCTCTCTTCCCG	59.756	55.000	0.00	0.00	0.00	5.14
1742	1915	1.154016	CGATCGACCACTTCACGCT	60.154	57.895	10.26	0.00	0.00	5.07
1743	1916	2.158959	CCGATCGACCACTTCACGC	61.159	63.158	18.66	0.00	0.00	5.34
1744	1917	1.071019	CACCGATCGACCACTTCACG	61.071	60.000	18.66	0.00	0.00	4.35
1745	1918	0.736325	CCACCGATCGACCACTTCAC	60.736	60.000	18.66	0.00	0.00	3.18
1746	1919	0.896479	TCCACCGATCGACCACTTCA	60.896	55.000	18.66	0.00	0.00	3.02
1791	1980	8.609617	TGCCTGGTATATAAGTAGCTTCATAT	57.390	34.615	0.00	0.00	0.00	1.78
1792	1981	8.609617	ATGCCTGGTATATAAGTAGCTTCATA	57.390	34.615	0.00	0.00	0.00	2.15
1810	2001	2.019984	GCTAGGTCTTTGAATGCCTGG	58.980	52.381	0.00	0.00	33.47	4.45
1811	2002	2.019984	GGCTAGGTCTTTGAATGCCTG	58.980	52.381	0.00	0.00	36.32	4.85
1812	2003	1.918957	AGGCTAGGTCTTTGAATGCCT	59.081	47.619	0.00	0.00	43.61	4.75
1820	2019	1.198759	TCGGCCAAGGCTAGGTCTTT	61.199	55.000	11.40	0.00	41.60	2.52
1950	2173	3.502595	GGGAAGAAAAAGAGTACAGTGGC	59.497	47.826	0.00	0.00	0.00	5.01
2026	2253	5.360714	CCATCAGGCTAATGTTTGTTACCAT	59.639	40.000	0.00	0.00	0.00	3.55
2229	2480	7.113704	ACAGAAACGTTCTTAATTAACCTCG	57.886	36.000	0.00	2.38	38.11	4.63
2252	2507	1.865865	TGAAGGAGACGAAGCACAAC	58.134	50.000	0.00	0.00	0.00	3.32

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.