Multiple sequence alignment - TraesCS3D01G372300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G372300 chr3D 100.000 3467 0 0 1 3467 485233546 485230080 0.000000e+00 6403.0
1 TraesCS3D01G372300 chr3D 86.071 560 74 3 2887 3443 14237922 14238480 1.780000e-167 599.0
2 TraesCS3D01G372300 chr3D 84.348 575 64 10 2913 3464 390672923 390673494 1.090000e-149 540.0
3 TraesCS3D01G372300 chr3A 93.233 2187 88 21 427 2576 628220919 628218756 0.000000e+00 3164.0
4 TraesCS3D01G372300 chr3A 87.798 377 22 7 2672 3031 628218651 628218282 1.490000e-113 420.0
5 TraesCS3D01G372300 chr3A 77.102 559 95 20 2922 3464 20130411 20130952 3.380000e-75 292.0
6 TraesCS3D01G372300 chr3A 94.086 186 3 4 257 436 628226618 628226435 3.410000e-70 276.0
7 TraesCS3D01G372300 chr3B 92.217 2030 92 27 498 2488 647944546 647942544 0.000000e+00 2813.0
8 TraesCS3D01G372300 chr3B 89.616 1146 61 23 498 1609 647969953 647968832 0.000000e+00 1404.0
9 TraesCS3D01G372300 chr3B 82.792 523 84 5 2946 3464 6090514 6089994 2.440000e-126 462.0
10 TraesCS3D01G372300 chr3B 94.697 264 9 4 257 517 647970224 647969963 4.170000e-109 405.0
11 TraesCS3D01G372300 chr3B 80.851 423 76 4 3024 3443 23791757 23792177 9.280000e-86 327.0
12 TraesCS3D01G372300 chr3B 83.133 166 11 4 2580 2745 647942430 647942282 6.040000e-28 135.0
13 TraesCS3D01G372300 chr1D 85.892 1609 123 57 882 2445 433060334 433061883 0.000000e+00 1618.0
14 TraesCS3D01G372300 chr1D 85.003 1647 134 64 881 2442 433092355 433093973 0.000000e+00 1568.0
15 TraesCS3D01G372300 chr1D 84.255 597 69 9 2890 3464 387422370 387422963 3.020000e-155 558.0
16 TraesCS3D01G372300 chr1B 82.435 2004 198 83 533 2442 584574455 584576398 0.000000e+00 1609.0
17 TraesCS3D01G372300 chr1B 84.697 1699 162 47 798 2442 584603477 584605131 0.000000e+00 1609.0
18 TraesCS3D01G372300 chr1B 82.435 2004 198 87 533 2442 584619816 584621759 0.000000e+00 1609.0
19 TraesCS3D01G372300 chr1B 84.456 1692 172 49 798 2442 584653911 584655558 0.000000e+00 1583.0
20 TraesCS3D01G372300 chr1A 88.863 1275 106 18 1146 2407 531367061 531368312 0.000000e+00 1535.0
21 TraesCS3D01G372300 chr1A 83.882 1700 158 71 795 2442 531512839 531514474 0.000000e+00 1515.0
22 TraesCS3D01G372300 chr1A 86.134 1327 115 42 1146 2442 531562016 531563303 0.000000e+00 1367.0
23 TraesCS3D01G372300 chr1A 79.459 185 15 13 533 702 531561466 531561642 3.660000e-20 110.0
24 TraesCS3D01G372300 chrUn 92.929 495 24 9 498 990 250505239 250505724 0.000000e+00 710.0
25 TraesCS3D01G372300 chrUn 94.465 271 10 4 251 518 250504962 250505230 2.490000e-111 412.0
26 TraesCS3D01G372300 chr7D 85.690 580 78 4 2889 3464 178136421 178136999 1.060000e-169 606.0
27 TraesCS3D01G372300 chr7D 84.670 561 81 5 2909 3467 630299425 630298868 3.910000e-154 555.0
28 TraesCS3D01G372300 chr7D 85.214 257 36 2 1 256 62722584 62722839 2.650000e-66 263.0
29 TraesCS3D01G372300 chr7D 79.679 187 33 4 41 225 269714859 269714676 2.810000e-26 130.0
30 TraesCS3D01G372300 chr5A 83.223 602 72 12 2887 3464 539071783 539071187 3.070000e-145 525.0
31 TraesCS3D01G372300 chr5A 84.911 338 39 5 2887 3213 269330824 269330488 7.170000e-87 331.0
32 TraesCS3D01G372300 chr5D 87.500 416 48 3 3053 3464 543832889 543833304 8.710000e-131 477.0
33 TraesCS3D01G372300 chr2D 84.914 464 68 2 2887 3350 35542005 35541544 5.240000e-128 468.0
34 TraesCS3D01G372300 chr6D 85.919 419 54 4 3053 3467 388207605 388207188 3.180000e-120 442.0
35 TraesCS3D01G372300 chr4D 83.290 389 44 11 2887 3256 440279308 440278922 4.290000e-89 339.0
36 TraesCS3D01G372300 chr5B 85.039 254 38 0 1 254 6494402 6494149 3.430000e-65 259.0
37 TraesCS3D01G372300 chr7B 77.295 207 43 3 41 245 271313411 271313207 6.080000e-23 119.0
38 TraesCS3D01G372300 chr7A 84.058 69 11 0 137 205 383180026 383179958 2.230000e-07 67.6
39 TraesCS3D01G372300 chr2A 81.176 85 15 1 121 205 457906928 457907011 2.230000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G372300 chr3D 485230080 485233546 3466 True 6403.0 6403 100.0000 1 3467 1 chr3D.!!$R1 3466
1 TraesCS3D01G372300 chr3D 14237922 14238480 558 False 599.0 599 86.0710 2887 3443 1 chr3D.!!$F1 556
2 TraesCS3D01G372300 chr3D 390672923 390673494 571 False 540.0 540 84.3480 2913 3464 1 chr3D.!!$F2 551
3 TraesCS3D01G372300 chr3A 628218282 628220919 2637 True 1792.0 3164 90.5155 427 3031 2 chr3A.!!$R2 2604
4 TraesCS3D01G372300 chr3A 20130411 20130952 541 False 292.0 292 77.1020 2922 3464 1 chr3A.!!$F1 542
5 TraesCS3D01G372300 chr3B 647942282 647944546 2264 True 1474.0 2813 87.6750 498 2745 2 chr3B.!!$R2 2247
6 TraesCS3D01G372300 chr3B 647968832 647970224 1392 True 904.5 1404 92.1565 257 1609 2 chr3B.!!$R3 1352
7 TraesCS3D01G372300 chr3B 6089994 6090514 520 True 462.0 462 82.7920 2946 3464 1 chr3B.!!$R1 518
8 TraesCS3D01G372300 chr1D 433060334 433061883 1549 False 1618.0 1618 85.8920 882 2445 1 chr1D.!!$F2 1563
9 TraesCS3D01G372300 chr1D 433092355 433093973 1618 False 1568.0 1568 85.0030 881 2442 1 chr1D.!!$F3 1561
10 TraesCS3D01G372300 chr1D 387422370 387422963 593 False 558.0 558 84.2550 2890 3464 1 chr1D.!!$F1 574
11 TraesCS3D01G372300 chr1B 584574455 584576398 1943 False 1609.0 1609 82.4350 533 2442 1 chr1B.!!$F1 1909
12 TraesCS3D01G372300 chr1B 584603477 584605131 1654 False 1609.0 1609 84.6970 798 2442 1 chr1B.!!$F2 1644
13 TraesCS3D01G372300 chr1B 584619816 584621759 1943 False 1609.0 1609 82.4350 533 2442 1 chr1B.!!$F3 1909
14 TraesCS3D01G372300 chr1B 584653911 584655558 1647 False 1583.0 1583 84.4560 798 2442 1 chr1B.!!$F4 1644
15 TraesCS3D01G372300 chr1A 531367061 531368312 1251 False 1535.0 1535 88.8630 1146 2407 1 chr1A.!!$F1 1261
16 TraesCS3D01G372300 chr1A 531512839 531514474 1635 False 1515.0 1515 83.8820 795 2442 1 chr1A.!!$F2 1647
17 TraesCS3D01G372300 chr1A 531561466 531563303 1837 False 738.5 1367 82.7965 533 2442 2 chr1A.!!$F3 1909
18 TraesCS3D01G372300 chrUn 250504962 250505724 762 False 561.0 710 93.6970 251 990 2 chrUn.!!$F1 739
19 TraesCS3D01G372300 chr7D 178136421 178136999 578 False 606.0 606 85.6900 2889 3464 1 chr7D.!!$F2 575
20 TraesCS3D01G372300 chr7D 630298868 630299425 557 True 555.0 555 84.6700 2909 3467 1 chr7D.!!$R2 558
21 TraesCS3D01G372300 chr5A 539071187 539071783 596 True 525.0 525 83.2230 2887 3464 1 chr5A.!!$R2 577

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
90 91 0.105039 GGACACTTCTCCCGGCTATG 59.895 60.0 0.00 0.0 0.00 2.23 F
115 116 0.179097 GCTTTGGTTGGCGGAAACAA 60.179 50.0 0.00 0.0 39.61 2.83 F
123 124 0.181587 TGGCGGAAACAAGTTCTCCA 59.818 50.0 11.77 0.0 36.87 3.86 F
1080 1196 0.243907 TTCACGCTTCTCTCTTCCCG 59.756 55.0 0.00 0.0 0.00 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1018 1117 0.178767 TGTTGCCATAGCTCGAGCAT 59.821 50.000 36.87 24.57 45.16 3.79 R
1194 1362 0.463295 CGATCTGCAGTGGCCAGAAT 60.463 55.000 14.67 0.00 40.13 2.40 R
1282 1450 2.679996 GCCATTGCCGGGGTTCTT 60.680 61.111 2.18 0.00 0.00 2.52 R
2584 2882 0.251165 AGTTTGGTAGTTGCGGCCAT 60.251 50.000 2.24 0.00 31.71 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.200283 GAGGAGGACGCGAGGCTG 62.200 72.222 15.93 0.00 40.87 4.85
19 20 4.070552 GGAGGACGCGAGGCTGTT 62.071 66.667 15.93 0.00 40.87 3.16
20 21 2.048127 GAGGACGCGAGGCTGTTT 60.048 61.111 15.93 0.00 40.87 2.83
21 22 2.357517 AGGACGCGAGGCTGTTTG 60.358 61.111 15.93 0.00 40.87 2.93
22 23 2.357034 GGACGCGAGGCTGTTTGA 60.357 61.111 15.93 0.00 40.87 2.69
23 24 2.383527 GGACGCGAGGCTGTTTGAG 61.384 63.158 15.93 0.00 40.87 3.02
24 25 1.664965 GACGCGAGGCTGTTTGAGT 60.665 57.895 15.93 0.00 34.96 3.41
25 26 1.222115 GACGCGAGGCTGTTTGAGTT 61.222 55.000 15.93 0.00 34.96 3.01
26 27 1.205064 CGCGAGGCTGTTTGAGTTG 59.795 57.895 0.00 0.00 0.00 3.16
27 28 1.576421 GCGAGGCTGTTTGAGTTGG 59.424 57.895 0.00 0.00 0.00 3.77
28 29 1.166531 GCGAGGCTGTTTGAGTTGGT 61.167 55.000 0.00 0.00 0.00 3.67
29 30 0.588252 CGAGGCTGTTTGAGTTGGTG 59.412 55.000 0.00 0.00 0.00 4.17
30 31 1.680338 GAGGCTGTTTGAGTTGGTGT 58.320 50.000 0.00 0.00 0.00 4.16
31 32 2.805295 CGAGGCTGTTTGAGTTGGTGTA 60.805 50.000 0.00 0.00 0.00 2.90
32 33 2.808543 GAGGCTGTTTGAGTTGGTGTAG 59.191 50.000 0.00 0.00 0.00 2.74
33 34 2.438021 AGGCTGTTTGAGTTGGTGTAGA 59.562 45.455 0.00 0.00 0.00 2.59
34 35 3.073062 AGGCTGTTTGAGTTGGTGTAGAT 59.927 43.478 0.00 0.00 0.00 1.98
35 36 3.189287 GGCTGTTTGAGTTGGTGTAGATG 59.811 47.826 0.00 0.00 0.00 2.90
36 37 4.065088 GCTGTTTGAGTTGGTGTAGATGA 58.935 43.478 0.00 0.00 0.00 2.92
37 38 4.083802 GCTGTTTGAGTTGGTGTAGATGAC 60.084 45.833 0.00 0.00 0.00 3.06
38 39 4.055360 TGTTTGAGTTGGTGTAGATGACG 58.945 43.478 0.00 0.00 0.00 4.35
39 40 4.056050 GTTTGAGTTGGTGTAGATGACGT 58.944 43.478 0.00 0.00 0.00 4.34
40 41 3.297830 TGAGTTGGTGTAGATGACGTG 57.702 47.619 0.00 0.00 0.00 4.49
41 42 1.993370 GAGTTGGTGTAGATGACGTGC 59.007 52.381 0.00 0.00 0.00 5.34
42 43 1.076332 GTTGGTGTAGATGACGTGCC 58.924 55.000 0.00 0.00 0.00 5.01
43 44 0.389296 TTGGTGTAGATGACGTGCCG 60.389 55.000 0.00 0.00 0.00 5.69
44 45 1.214589 GGTGTAGATGACGTGCCGT 59.785 57.895 0.00 0.00 45.10 5.68
45 46 0.389426 GGTGTAGATGACGTGCCGTT 60.389 55.000 0.00 0.00 41.37 4.44
46 47 1.425412 GTGTAGATGACGTGCCGTTT 58.575 50.000 0.00 0.00 41.37 3.60
47 48 1.126113 GTGTAGATGACGTGCCGTTTG 59.874 52.381 0.00 0.00 41.37 2.93
48 49 1.269883 TGTAGATGACGTGCCGTTTGT 60.270 47.619 0.00 0.00 41.37 2.83
49 50 1.796459 GTAGATGACGTGCCGTTTGTT 59.204 47.619 0.00 0.00 41.37 2.83
50 51 0.586319 AGATGACGTGCCGTTTGTTG 59.414 50.000 0.00 0.00 41.37 3.33
51 52 0.385473 GATGACGTGCCGTTTGTTGG 60.385 55.000 0.00 0.00 41.37 3.77
52 53 0.816018 ATGACGTGCCGTTTGTTGGA 60.816 50.000 0.00 0.00 41.37 3.53
53 54 0.816018 TGACGTGCCGTTTGTTGGAT 60.816 50.000 0.00 0.00 41.37 3.41
54 55 0.385473 GACGTGCCGTTTGTTGGATG 60.385 55.000 0.00 0.00 41.37 3.51
55 56 0.816018 ACGTGCCGTTTGTTGGATGA 60.816 50.000 0.00 0.00 36.35 2.92
56 57 0.110238 CGTGCCGTTTGTTGGATGAG 60.110 55.000 0.00 0.00 0.00 2.90
57 58 1.234821 GTGCCGTTTGTTGGATGAGA 58.765 50.000 0.00 0.00 0.00 3.27
58 59 1.606668 GTGCCGTTTGTTGGATGAGAA 59.393 47.619 0.00 0.00 0.00 2.87
59 60 1.879380 TGCCGTTTGTTGGATGAGAAG 59.121 47.619 0.00 0.00 0.00 2.85
60 61 1.200020 GCCGTTTGTTGGATGAGAAGG 59.800 52.381 0.00 0.00 0.00 3.46
61 62 2.778299 CCGTTTGTTGGATGAGAAGGA 58.222 47.619 0.00 0.00 0.00 3.36
62 63 3.146066 CCGTTTGTTGGATGAGAAGGAA 58.854 45.455 0.00 0.00 0.00 3.36
63 64 3.189287 CCGTTTGTTGGATGAGAAGGAAG 59.811 47.826 0.00 0.00 0.00 3.46
64 65 3.815401 CGTTTGTTGGATGAGAAGGAAGT 59.185 43.478 0.00 0.00 0.00 3.01
65 66 4.275936 CGTTTGTTGGATGAGAAGGAAGTT 59.724 41.667 0.00 0.00 0.00 2.66
66 67 5.523369 GTTTGTTGGATGAGAAGGAAGTTG 58.477 41.667 0.00 0.00 0.00 3.16
67 68 4.437682 TGTTGGATGAGAAGGAAGTTGT 57.562 40.909 0.00 0.00 0.00 3.32
68 69 4.389374 TGTTGGATGAGAAGGAAGTTGTC 58.611 43.478 0.00 0.00 0.00 3.18
69 70 4.141505 TGTTGGATGAGAAGGAAGTTGTCA 60.142 41.667 0.00 0.00 42.33 3.58
71 72 4.582869 TGGATGAGAAGGAAGTTGTCATG 58.417 43.478 2.41 0.00 46.53 3.07
72 73 3.944015 GGATGAGAAGGAAGTTGTCATGG 59.056 47.826 2.41 0.00 46.53 3.66
73 74 4.323792 GGATGAGAAGGAAGTTGTCATGGA 60.324 45.833 2.41 0.00 46.53 3.41
74 75 4.008074 TGAGAAGGAAGTTGTCATGGAC 57.992 45.455 0.00 0.00 33.59 4.02
75 76 3.390967 TGAGAAGGAAGTTGTCATGGACA 59.609 43.478 0.00 0.00 41.09 4.02
76 77 3.744660 AGAAGGAAGTTGTCATGGACAC 58.255 45.455 0.00 0.00 42.60 3.67
77 78 3.392616 AGAAGGAAGTTGTCATGGACACT 59.607 43.478 0.00 0.00 42.60 3.55
78 79 3.864789 AGGAAGTTGTCATGGACACTT 57.135 42.857 0.00 6.30 42.60 3.16
79 80 3.744660 AGGAAGTTGTCATGGACACTTC 58.255 45.455 20.75 20.75 42.60 3.01
80 81 3.392616 AGGAAGTTGTCATGGACACTTCT 59.607 43.478 24.10 15.63 42.60 2.85
81 82 3.748568 GGAAGTTGTCATGGACACTTCTC 59.251 47.826 24.10 17.13 42.60 2.87
82 83 3.409026 AGTTGTCATGGACACTTCTCC 57.591 47.619 0.00 0.00 42.60 3.71
83 84 2.039084 AGTTGTCATGGACACTTCTCCC 59.961 50.000 0.00 0.00 42.60 4.30
84 85 0.608130 TGTCATGGACACTTCTCCCG 59.392 55.000 0.00 0.00 37.67 5.14
85 86 0.108138 GTCATGGACACTTCTCCCGG 60.108 60.000 0.00 0.00 32.09 5.73
86 87 1.450312 CATGGACACTTCTCCCGGC 60.450 63.158 0.00 0.00 0.00 6.13
87 88 1.613630 ATGGACACTTCTCCCGGCT 60.614 57.895 0.00 0.00 0.00 5.52
88 89 0.325296 ATGGACACTTCTCCCGGCTA 60.325 55.000 0.00 0.00 0.00 3.93
89 90 0.325296 TGGACACTTCTCCCGGCTAT 60.325 55.000 0.00 0.00 0.00 2.97
90 91 0.105039 GGACACTTCTCCCGGCTATG 59.895 60.000 0.00 0.00 0.00 2.23
91 92 1.112113 GACACTTCTCCCGGCTATGA 58.888 55.000 0.00 0.00 0.00 2.15
92 93 1.480954 GACACTTCTCCCGGCTATGAA 59.519 52.381 0.00 0.00 0.00 2.57
93 94 1.482593 ACACTTCTCCCGGCTATGAAG 59.517 52.381 16.74 16.74 40.97 3.02
94 95 1.123928 ACTTCTCCCGGCTATGAAGG 58.876 55.000 20.08 8.89 39.90 3.46
95 96 0.250081 CTTCTCCCGGCTATGAAGGC 60.250 60.000 0.00 0.00 44.69 4.35
102 103 1.729881 GGCTATGAAGGCGCTTTGG 59.270 57.895 10.44 0.00 38.69 3.28
103 104 1.032114 GGCTATGAAGGCGCTTTGGT 61.032 55.000 10.44 0.00 38.69 3.67
104 105 0.811281 GCTATGAAGGCGCTTTGGTT 59.189 50.000 10.44 0.00 0.00 3.67
105 106 1.468054 GCTATGAAGGCGCTTTGGTTG 60.468 52.381 10.44 0.02 0.00 3.77
106 107 1.133025 CTATGAAGGCGCTTTGGTTGG 59.867 52.381 10.44 0.00 0.00 3.77
107 108 2.049156 GAAGGCGCTTTGGTTGGC 60.049 61.111 10.44 0.00 0.00 4.52
112 113 2.725008 CGCTTTGGTTGGCGGAAA 59.275 55.556 0.00 0.00 46.42 3.13
113 114 1.660264 CGCTTTGGTTGGCGGAAAC 60.660 57.895 0.00 0.00 46.42 2.78
114 115 1.439644 GCTTTGGTTGGCGGAAACA 59.560 52.632 0.00 0.00 0.00 2.83
115 116 0.179097 GCTTTGGTTGGCGGAAACAA 60.179 50.000 0.00 0.00 39.61 2.83
116 117 1.851658 CTTTGGTTGGCGGAAACAAG 58.148 50.000 0.00 0.00 42.32 3.16
117 118 1.136110 CTTTGGTTGGCGGAAACAAGT 59.864 47.619 0.00 0.00 42.32 3.16
118 119 1.187087 TTGGTTGGCGGAAACAAGTT 58.813 45.000 0.00 0.00 36.27 2.66
119 120 0.741915 TGGTTGGCGGAAACAAGTTC 59.258 50.000 0.00 0.00 35.28 3.01
120 121 1.029681 GGTTGGCGGAAACAAGTTCT 58.970 50.000 0.00 0.00 36.40 3.01
121 122 1.001706 GGTTGGCGGAAACAAGTTCTC 60.002 52.381 0.00 0.00 36.40 2.87
122 123 1.001706 GTTGGCGGAAACAAGTTCTCC 60.002 52.381 0.00 0.00 36.40 3.71
123 124 0.181587 TGGCGGAAACAAGTTCTCCA 59.818 50.000 11.77 0.00 36.87 3.86
124 125 1.314730 GGCGGAAACAAGTTCTCCAA 58.685 50.000 11.77 0.00 36.40 3.53
125 126 1.266989 GGCGGAAACAAGTTCTCCAAG 59.733 52.381 11.77 2.38 36.40 3.61
126 127 1.335051 GCGGAAACAAGTTCTCCAAGC 60.335 52.381 11.77 6.62 36.40 4.01
127 128 1.266989 CGGAAACAAGTTCTCCAAGCC 59.733 52.381 11.77 0.00 36.40 4.35
128 129 1.266989 GGAAACAAGTTCTCCAAGCCG 59.733 52.381 8.37 0.00 36.40 5.52
129 130 1.947456 GAAACAAGTTCTCCAAGCCGT 59.053 47.619 0.00 0.00 33.03 5.68
130 131 1.308998 AACAAGTTCTCCAAGCCGTG 58.691 50.000 0.00 0.00 0.00 4.94
143 144 3.121030 CCGTGGAGCAAGGCGAAG 61.121 66.667 0.00 0.00 0.00 3.79
157 158 2.162716 CGAAGCGAAAGGACCTTGG 58.837 57.895 7.72 4.31 0.00 3.61
158 159 1.876664 GAAGCGAAAGGACCTTGGC 59.123 57.895 18.39 18.39 0.00 4.52
159 160 1.912371 GAAGCGAAAGGACCTTGGCG 61.912 60.000 19.89 19.89 31.82 5.69
160 161 2.358247 GCGAAAGGACCTTGGCGA 60.358 61.111 25.50 0.00 0.00 5.54
161 162 1.964373 GCGAAAGGACCTTGGCGAA 60.964 57.895 25.50 0.00 0.00 4.70
162 163 1.912371 GCGAAAGGACCTTGGCGAAG 61.912 60.000 25.50 0.74 0.00 3.79
163 164 0.320421 CGAAAGGACCTTGGCGAAGA 60.320 55.000 19.64 0.00 0.00 2.87
164 165 1.443802 GAAAGGACCTTGGCGAAGAG 58.556 55.000 7.72 2.90 0.00 2.85
174 175 2.669569 GCGAAGAGCTTGGCCACA 60.670 61.111 3.88 0.00 44.04 4.17
175 176 2.260869 GCGAAGAGCTTGGCCACAA 61.261 57.895 3.88 0.00 44.04 3.33
194 195 6.323203 CACAAGATGGATAAGGCTAATTGG 57.677 41.667 0.00 0.00 0.00 3.16
195 196 5.242393 CACAAGATGGATAAGGCTAATTGGG 59.758 44.000 0.00 0.00 0.00 4.12
196 197 4.039603 AGATGGATAAGGCTAATTGGGC 57.960 45.455 7.33 7.33 0.00 5.36
197 198 2.270352 TGGATAAGGCTAATTGGGCG 57.730 50.000 9.74 0.00 36.85 6.13
198 199 1.771854 TGGATAAGGCTAATTGGGCGA 59.228 47.619 9.74 2.78 36.85 5.54
199 200 2.375174 TGGATAAGGCTAATTGGGCGAT 59.625 45.455 9.74 7.52 36.85 4.58
200 201 3.585289 TGGATAAGGCTAATTGGGCGATA 59.415 43.478 9.74 7.86 36.85 2.92
201 202 4.192317 GGATAAGGCTAATTGGGCGATAG 58.808 47.826 9.74 0.00 36.85 2.08
202 203 4.323562 GGATAAGGCTAATTGGGCGATAGT 60.324 45.833 9.74 0.00 36.85 2.12
203 204 2.841442 AGGCTAATTGGGCGATAGTC 57.159 50.000 9.74 0.00 42.67 2.59
204 205 1.000955 AGGCTAATTGGGCGATAGTCG 59.999 52.381 9.74 0.00 46.06 4.18
205 206 1.000506 GGCTAATTGGGCGATAGTCGA 59.999 52.381 0.00 0.00 46.06 4.20
206 207 2.547218 GGCTAATTGGGCGATAGTCGAA 60.547 50.000 0.00 0.00 46.06 3.71
207 208 2.731976 GCTAATTGGGCGATAGTCGAAG 59.268 50.000 3.20 0.00 43.00 3.79
208 209 3.552273 GCTAATTGGGCGATAGTCGAAGA 60.552 47.826 3.20 0.00 43.00 2.87
209 210 2.802787 ATTGGGCGATAGTCGAAGAG 57.197 50.000 3.20 0.00 43.00 2.85
210 211 1.758936 TTGGGCGATAGTCGAAGAGA 58.241 50.000 3.20 0.00 46.06 3.10
211 212 1.309950 TGGGCGATAGTCGAAGAGAG 58.690 55.000 3.20 0.00 46.06 3.20
212 213 1.310904 GGGCGATAGTCGAAGAGAGT 58.689 55.000 3.20 0.00 46.06 3.24
213 214 2.158856 TGGGCGATAGTCGAAGAGAGTA 60.159 50.000 3.20 0.00 46.06 2.59
214 215 2.481185 GGGCGATAGTCGAAGAGAGTAG 59.519 54.545 3.20 0.00 46.06 2.57
215 216 2.096119 GGCGATAGTCGAAGAGAGTAGC 60.096 54.545 3.20 0.00 43.74 3.58
216 217 2.096119 GCGATAGTCGAAGAGAGTAGCC 60.096 54.545 3.20 0.00 43.74 3.93
217 218 2.156117 CGATAGTCGAAGAGAGTAGCCG 59.844 54.545 0.00 0.00 43.74 5.52
218 219 1.297664 TAGTCGAAGAGAGTAGCCGC 58.702 55.000 0.00 0.00 36.95 6.53
219 220 1.297745 GTCGAAGAGAGTAGCCGCG 60.298 63.158 0.00 0.00 36.95 6.46
220 221 1.744368 TCGAAGAGAGTAGCCGCGT 60.744 57.895 4.92 0.00 0.00 6.01
221 222 1.297745 CGAAGAGAGTAGCCGCGTC 60.298 63.158 4.92 0.00 0.00 5.19
222 223 1.297745 GAAGAGAGTAGCCGCGTCG 60.298 63.158 4.92 0.00 0.00 5.12
232 233 4.439472 CCGCGTCGGGCTTTTTCG 62.439 66.667 4.92 0.00 44.15 3.46
233 234 4.439472 CGCGTCGGGCTTTTTCGG 62.439 66.667 0.00 0.00 40.44 4.30
234 235 4.753877 GCGTCGGGCTTTTTCGGC 62.754 66.667 0.00 0.00 39.11 5.54
235 236 3.350612 CGTCGGGCTTTTTCGGCA 61.351 61.111 0.00 0.00 0.00 5.69
236 237 2.561373 GTCGGGCTTTTTCGGCAG 59.439 61.111 0.00 0.00 0.00 4.85
237 238 3.361977 TCGGGCTTTTTCGGCAGC 61.362 61.111 0.00 0.00 35.07 5.25
238 239 3.669344 CGGGCTTTTTCGGCAGCA 61.669 61.111 0.00 0.00 37.81 4.41
239 240 2.259511 GGGCTTTTTCGGCAGCAG 59.740 61.111 0.00 0.00 37.81 4.24
240 241 2.268076 GGGCTTTTTCGGCAGCAGA 61.268 57.895 0.00 0.00 37.81 4.26
241 242 1.659794 GGCTTTTTCGGCAGCAGAA 59.340 52.632 3.56 3.56 37.81 3.02
242 243 0.244721 GGCTTTTTCGGCAGCAGAAT 59.755 50.000 8.93 0.00 37.81 2.40
243 244 1.343506 GCTTTTTCGGCAGCAGAATG 58.656 50.000 8.93 4.33 35.95 2.67
244 245 1.068333 GCTTTTTCGGCAGCAGAATGA 60.068 47.619 8.93 0.00 39.69 2.57
245 246 2.416431 GCTTTTTCGGCAGCAGAATGAT 60.416 45.455 8.93 0.00 39.69 2.45
246 247 3.181497 GCTTTTTCGGCAGCAGAATGATA 60.181 43.478 8.93 0.00 39.69 2.15
247 248 4.675146 GCTTTTTCGGCAGCAGAATGATAA 60.675 41.667 8.93 0.00 39.69 1.75
248 249 4.621068 TTTTCGGCAGCAGAATGATAAG 57.379 40.909 8.93 0.00 39.69 1.73
249 250 2.245159 TCGGCAGCAGAATGATAAGG 57.755 50.000 0.00 0.00 39.69 2.69
253 254 1.478288 GCAGCAGAATGATAAGGGCCT 60.478 52.381 0.00 0.00 39.69 5.19
255 256 1.071385 AGCAGAATGATAAGGGCCTCG 59.929 52.381 6.46 0.00 39.69 4.63
269 270 0.392461 GCCTCGCTTCATTGGTGGTA 60.392 55.000 0.00 0.00 0.00 3.25
320 321 2.670934 CTGGCCTGAAGCGCAAGT 60.671 61.111 11.47 0.00 45.17 3.16
358 361 4.683832 AGTGTGTGTCTACTTGTCTTGTC 58.316 43.478 0.00 0.00 0.00 3.18
394 398 4.518970 GGTGGTGAGAAACTTTGCTATTGA 59.481 41.667 0.00 0.00 0.00 2.57
403 407 6.491403 AGAAACTTTGCTATTGACCTCATGTT 59.509 34.615 0.00 0.00 0.00 2.71
558 599 1.865865 TGAAGGAGACGAAGCACAAC 58.134 50.000 0.00 0.00 0.00 3.32
581 622 7.113704 ACAGAAACGTTCTTAATTAACCTCG 57.886 36.000 0.00 2.38 38.11 4.63
784 853 5.360714 CCATCAGGCTAATGTTTGTTACCAT 59.639 40.000 0.00 0.00 0.00 3.55
860 933 3.502595 GGGAAGAAAAAGAGTACAGTGGC 59.497 47.826 0.00 0.00 0.00 5.01
990 1077 1.198759 TCGGCCAAGGCTAGGTCTTT 61.199 55.000 11.40 0.00 41.60 2.52
996 1083 2.424956 CCAAGGCTAGGTCTTTGAATGC 59.575 50.000 0.00 0.00 0.00 3.56
998 1085 1.918957 AGGCTAGGTCTTTGAATGCCT 59.081 47.619 0.00 0.00 43.61 4.75
999 1086 2.019984 GGCTAGGTCTTTGAATGCCTG 58.980 52.381 0.00 0.00 36.32 4.85
1000 1087 2.019984 GCTAGGTCTTTGAATGCCTGG 58.980 52.381 0.00 0.00 33.47 4.45
1018 1117 8.609617 ATGCCTGGTATATAAGTAGCTTCATA 57.390 34.615 0.00 0.00 0.00 2.15
1019 1118 8.609617 TGCCTGGTATATAAGTAGCTTCATAT 57.390 34.615 0.00 0.00 0.00 1.78
1064 1175 0.896479 TCCACCGATCGACCACTTCA 60.896 55.000 18.66 0.00 0.00 3.02
1066 1177 1.071019 CACCGATCGACCACTTCACG 61.071 60.000 18.66 0.00 0.00 4.35
1068 1179 1.154016 CGATCGACCACTTCACGCT 60.154 57.895 10.26 0.00 0.00 5.07
1080 1196 0.243907 TTCACGCTTCTCTCTTCCCG 59.756 55.000 0.00 0.00 0.00 5.14
1102 1245 5.282510 CGTCCAATTAATCTTAGTCGAGCT 58.717 41.667 0.00 0.00 0.00 4.09
1151 1319 3.887716 GCTATTCCTGCAAATCTGATGGT 59.112 43.478 0.00 0.00 0.00 3.55
1356 1530 2.607282 CGTCGAGGTACTGCAAGAAACT 60.607 50.000 0.00 0.00 41.55 2.66
1357 1531 3.391049 GTCGAGGTACTGCAAGAAACTT 58.609 45.455 0.00 0.00 41.55 2.66
1358 1532 4.553323 GTCGAGGTACTGCAAGAAACTTA 58.447 43.478 0.00 0.00 41.55 2.24
1359 1533 5.169295 GTCGAGGTACTGCAAGAAACTTAT 58.831 41.667 0.00 0.00 41.55 1.73
1360 1534 6.327934 GTCGAGGTACTGCAAGAAACTTATA 58.672 40.000 0.00 0.00 41.55 0.98
1361 1535 6.810182 GTCGAGGTACTGCAAGAAACTTATAA 59.190 38.462 0.00 0.00 41.55 0.98
1362 1536 7.330208 GTCGAGGTACTGCAAGAAACTTATAAA 59.670 37.037 0.00 0.00 41.55 1.40
1363 1537 7.330208 TCGAGGTACTGCAAGAAACTTATAAAC 59.670 37.037 0.00 0.00 41.55 2.01
1367 1541 7.743400 GGTACTGCAAGAAACTTATAAACGAAC 59.257 37.037 0.00 0.00 37.43 3.95
1423 1630 6.016276 AGGCTTGATTAATTTCGTTGAGTTGT 60.016 34.615 0.00 0.00 0.00 3.32
1442 1649 3.205338 TGTTGATTAGGGATGTGATGCG 58.795 45.455 0.00 0.00 0.00 4.73
1593 1801 1.216444 GTCTCCTGCGCAGACATCA 59.784 57.895 38.06 14.16 40.18 3.07
1696 1913 2.125512 CTTCTCCAACGCCTCCGG 60.126 66.667 0.00 0.00 39.22 5.14
2148 2365 2.579201 CCGGCATCGAGGTCAAGT 59.421 61.111 1.43 0.00 39.00 3.16
2195 2412 1.349627 CTGCCGCGCAATCAACTAG 59.650 57.895 8.75 0.00 38.41 2.57
2200 2417 1.588404 CCGCGCAATCAACTAGTACTG 59.412 52.381 8.75 0.00 0.00 2.74
2256 2497 5.732528 GCATGCATGGTGAAAGATTACTCAG 60.733 44.000 27.34 0.00 0.00 3.35
2485 2744 7.728148 TGGAATAATAAAGTGATGCATGCAAT 58.272 30.769 26.68 13.38 0.00 3.56
2584 2882 1.403679 GCATACAAGCAAATACCGCCA 59.596 47.619 0.00 0.00 0.00 5.69
2586 2884 3.631144 CATACAAGCAAATACCGCCATG 58.369 45.455 0.00 0.00 0.00 3.66
2614 2912 6.292114 CGCAACTACCAAACTTTCCAATTTTC 60.292 38.462 0.00 0.00 0.00 2.29
2660 2958 0.674581 CATCAACCTGCTTCCTCGCA 60.675 55.000 0.00 0.00 38.40 5.10
2662 2960 0.036732 TCAACCTGCTTCCTCGCATT 59.963 50.000 0.00 0.00 39.52 3.56
2663 2961 0.449388 CAACCTGCTTCCTCGCATTC 59.551 55.000 0.00 0.00 39.52 2.67
2664 2962 1.021390 AACCTGCTTCCTCGCATTCG 61.021 55.000 0.00 0.00 39.52 3.34
2665 2963 2.705826 CTGCTTCCTCGCATTCGC 59.294 61.111 0.00 0.00 39.52 4.70
2666 2964 2.817423 CTGCTTCCTCGCATTCGCC 61.817 63.158 0.00 0.00 39.52 5.54
2667 2965 3.577313 GCTTCCTCGCATTCGCCC 61.577 66.667 0.00 0.00 35.26 6.13
2668 2966 2.187946 CTTCCTCGCATTCGCCCT 59.812 61.111 0.00 0.00 35.26 5.19
2669 2967 1.441729 CTTCCTCGCATTCGCCCTA 59.558 57.895 0.00 0.00 35.26 3.53
2670 2968 0.598680 CTTCCTCGCATTCGCCCTAG 60.599 60.000 0.00 0.00 35.26 3.02
2711 3015 4.847367 CTTGCAGCCCCCATCCCC 62.847 72.222 0.00 0.00 0.00 4.81
2760 3064 4.166011 GTGGCCGACGCTCATTGC 62.166 66.667 0.00 0.00 38.57 3.56
2763 3067 3.121030 GCCGACGCTCATTGCTGT 61.121 61.111 0.00 0.00 40.11 4.40
2764 3068 2.680913 GCCGACGCTCATTGCTGTT 61.681 57.895 0.00 0.00 40.11 3.16
2772 3076 1.135859 GCTCATTGCTGTTGTTCCTCG 60.136 52.381 0.00 0.00 38.95 4.63
2796 3117 1.001393 TCCCCGCCTTTAGCTTTGG 60.001 57.895 0.00 0.00 40.39 3.28
2830 3151 4.083484 ACCGACGCCAGAAAAGAAAATTAG 60.083 41.667 0.00 0.00 0.00 1.73
2842 3163 6.901081 AAAGAAAATTAGGGACCTGAGTTG 57.099 37.500 0.00 0.00 0.00 3.16
2971 3292 3.155167 GATTCGCCTCCCCTCCGT 61.155 66.667 0.00 0.00 0.00 4.69
3114 3486 3.248266 CTCCTTAAATTCGTTCGTCGGT 58.752 45.455 0.00 0.00 40.32 4.69
3133 3505 1.945394 GTACGGATTAGACGGAGCTCA 59.055 52.381 17.19 0.00 35.23 4.26
3209 3583 2.230864 GTACGCAACAACGAGATTTGC 58.769 47.619 0.00 0.00 41.85 3.68
3215 3589 3.610114 GCAACAACGAGATTTGCTGTCAT 60.610 43.478 0.00 0.00 41.98 3.06
3226 3600 5.411977 AGATTTGCTGTCATGTTCTTCAGAG 59.588 40.000 0.00 0.00 0.00 3.35
3301 3675 0.874175 CACGTGCACGAAGACTTCCA 60.874 55.000 42.94 0.00 43.02 3.53
3302 3676 0.874607 ACGTGCACGAAGACTTCCAC 60.875 55.000 42.94 10.50 43.02 4.02
3326 3701 2.499693 TGTCATCGATAAGGTCAAGCCA 59.500 45.455 0.00 0.00 40.61 4.75
3342 3717 2.045280 CCAGCTCCGGTATGAGAGG 58.955 63.158 0.00 0.00 34.11 3.69
3400 3802 2.932855 TGGTTGTTCGGTTGTCCATA 57.067 45.000 0.00 0.00 0.00 2.74
3443 3846 9.584008 TTATTATGTTTGGGGTGTTTTGTACTA 57.416 29.630 0.00 0.00 0.00 1.82
3456 3859 5.697633 TGTTTTGTACTACGGGTGAATCTTC 59.302 40.000 0.00 0.00 0.00 2.87
3464 3867 6.994221 ACTACGGGTGAATCTTCATAATAGG 58.006 40.000 0.00 0.00 39.73 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.200283 CAGCCTCGCGTCCTCCTC 62.200 72.222 5.77 0.00 0.00 3.71
6 7 1.222115 AACTCAAACAGCCTCGCGTC 61.222 55.000 5.77 0.00 0.00 5.19
7 8 1.227556 AACTCAAACAGCCTCGCGT 60.228 52.632 5.77 0.00 0.00 6.01
8 9 1.205064 CAACTCAAACAGCCTCGCG 59.795 57.895 0.00 0.00 0.00 5.87
9 10 1.166531 ACCAACTCAAACAGCCTCGC 61.167 55.000 0.00 0.00 0.00 5.03
10 11 0.588252 CACCAACTCAAACAGCCTCG 59.412 55.000 0.00 0.00 0.00 4.63
11 12 1.680338 ACACCAACTCAAACAGCCTC 58.320 50.000 0.00 0.00 0.00 4.70
12 13 2.438021 TCTACACCAACTCAAACAGCCT 59.562 45.455 0.00 0.00 0.00 4.58
13 14 2.846193 TCTACACCAACTCAAACAGCC 58.154 47.619 0.00 0.00 0.00 4.85
14 15 4.065088 TCATCTACACCAACTCAAACAGC 58.935 43.478 0.00 0.00 0.00 4.40
15 16 4.150627 CGTCATCTACACCAACTCAAACAG 59.849 45.833 0.00 0.00 0.00 3.16
16 17 4.055360 CGTCATCTACACCAACTCAAACA 58.945 43.478 0.00 0.00 0.00 2.83
17 18 4.056050 ACGTCATCTACACCAACTCAAAC 58.944 43.478 0.00 0.00 0.00 2.93
18 19 4.055360 CACGTCATCTACACCAACTCAAA 58.945 43.478 0.00 0.00 0.00 2.69
19 20 3.649073 CACGTCATCTACACCAACTCAA 58.351 45.455 0.00 0.00 0.00 3.02
20 21 2.609491 GCACGTCATCTACACCAACTCA 60.609 50.000 0.00 0.00 0.00 3.41
21 22 1.993370 GCACGTCATCTACACCAACTC 59.007 52.381 0.00 0.00 0.00 3.01
22 23 1.337823 GGCACGTCATCTACACCAACT 60.338 52.381 0.00 0.00 0.00 3.16
23 24 1.076332 GGCACGTCATCTACACCAAC 58.924 55.000 0.00 0.00 0.00 3.77
24 25 3.525619 GGCACGTCATCTACACCAA 57.474 52.632 0.00 0.00 0.00 3.67
38 39 1.234821 TCTCATCCAACAAACGGCAC 58.765 50.000 0.00 0.00 0.00 5.01
39 40 1.879380 CTTCTCATCCAACAAACGGCA 59.121 47.619 0.00 0.00 0.00 5.69
40 41 1.200020 CCTTCTCATCCAACAAACGGC 59.800 52.381 0.00 0.00 0.00 5.68
41 42 2.778299 TCCTTCTCATCCAACAAACGG 58.222 47.619 0.00 0.00 0.00 4.44
42 43 3.815401 ACTTCCTTCTCATCCAACAAACG 59.185 43.478 0.00 0.00 0.00 3.60
43 44 5.067805 ACAACTTCCTTCTCATCCAACAAAC 59.932 40.000 0.00 0.00 0.00 2.93
44 45 5.200483 ACAACTTCCTTCTCATCCAACAAA 58.800 37.500 0.00 0.00 0.00 2.83
45 46 4.792068 ACAACTTCCTTCTCATCCAACAA 58.208 39.130 0.00 0.00 0.00 2.83
46 47 4.141505 TGACAACTTCCTTCTCATCCAACA 60.142 41.667 0.00 0.00 0.00 3.33
47 48 4.389374 TGACAACTTCCTTCTCATCCAAC 58.611 43.478 0.00 0.00 0.00 3.77
48 49 4.705110 TGACAACTTCCTTCTCATCCAA 57.295 40.909 0.00 0.00 0.00 3.53
49 50 4.566278 CCATGACAACTTCCTTCTCATCCA 60.566 45.833 0.00 0.00 0.00 3.41
50 51 3.944015 CCATGACAACTTCCTTCTCATCC 59.056 47.826 0.00 0.00 0.00 3.51
51 52 4.633565 GTCCATGACAACTTCCTTCTCATC 59.366 45.833 0.00 0.00 32.09 2.92
52 53 4.042062 TGTCCATGACAACTTCCTTCTCAT 59.958 41.667 0.00 0.00 39.78 2.90
53 54 3.390967 TGTCCATGACAACTTCCTTCTCA 59.609 43.478 0.00 0.00 39.78 3.27
54 55 3.748568 GTGTCCATGACAACTTCCTTCTC 59.251 47.826 0.00 0.00 44.49 2.87
55 56 3.392616 AGTGTCCATGACAACTTCCTTCT 59.607 43.478 0.00 0.00 44.49 2.85
56 57 3.744660 AGTGTCCATGACAACTTCCTTC 58.255 45.455 0.00 0.00 44.49 3.46
57 58 3.864789 AGTGTCCATGACAACTTCCTT 57.135 42.857 0.00 0.00 44.49 3.36
58 59 3.392616 AGAAGTGTCCATGACAACTTCCT 59.607 43.478 21.06 11.87 44.49 3.36
59 60 3.744660 AGAAGTGTCCATGACAACTTCC 58.255 45.455 21.06 10.52 44.49 3.46
60 61 3.748568 GGAGAAGTGTCCATGACAACTTC 59.251 47.826 18.83 18.83 44.49 3.01
61 62 3.496870 GGGAGAAGTGTCCATGACAACTT 60.497 47.826 0.00 0.06 44.49 2.66
62 63 2.039084 GGGAGAAGTGTCCATGACAACT 59.961 50.000 0.00 0.00 44.49 3.16
63 64 2.427506 GGGAGAAGTGTCCATGACAAC 58.572 52.381 0.00 0.00 44.49 3.32
64 65 1.001974 CGGGAGAAGTGTCCATGACAA 59.998 52.381 0.00 0.00 44.49 3.18
65 66 0.608130 CGGGAGAAGTGTCCATGACA 59.392 55.000 0.00 0.00 40.50 3.58
66 67 0.108138 CCGGGAGAAGTGTCCATGAC 60.108 60.000 0.00 0.00 38.52 3.06
67 68 1.899437 GCCGGGAGAAGTGTCCATGA 61.899 60.000 2.18 0.00 38.52 3.07
68 69 1.450312 GCCGGGAGAAGTGTCCATG 60.450 63.158 2.18 0.00 38.52 3.66
69 70 0.325296 TAGCCGGGAGAAGTGTCCAT 60.325 55.000 2.18 0.00 38.52 3.41
70 71 0.325296 ATAGCCGGGAGAAGTGTCCA 60.325 55.000 2.18 0.00 38.52 4.02
71 72 0.105039 CATAGCCGGGAGAAGTGTCC 59.895 60.000 2.18 0.00 35.64 4.02
72 73 1.112113 TCATAGCCGGGAGAAGTGTC 58.888 55.000 2.18 0.00 0.00 3.67
73 74 1.482593 CTTCATAGCCGGGAGAAGTGT 59.517 52.381 2.18 0.00 34.32 3.55
74 75 1.202580 CCTTCATAGCCGGGAGAAGTG 60.203 57.143 2.18 0.00 36.60 3.16
75 76 1.123928 CCTTCATAGCCGGGAGAAGT 58.876 55.000 2.18 0.00 36.60 3.01
76 77 0.250081 GCCTTCATAGCCGGGAGAAG 60.250 60.000 2.18 5.19 37.74 2.85
77 78 1.830145 GCCTTCATAGCCGGGAGAA 59.170 57.895 2.18 0.00 0.00 2.87
78 79 2.498941 CGCCTTCATAGCCGGGAGA 61.499 63.158 2.18 0.00 0.00 3.71
79 80 2.029666 CGCCTTCATAGCCGGGAG 59.970 66.667 2.18 0.00 0.00 4.30
80 81 4.235762 GCGCCTTCATAGCCGGGA 62.236 66.667 2.18 0.00 0.00 5.14
81 82 3.757248 AAGCGCCTTCATAGCCGGG 62.757 63.158 2.29 0.00 0.00 5.73
82 83 1.819632 AAAGCGCCTTCATAGCCGG 60.820 57.895 2.29 0.00 0.00 6.13
83 84 1.353103 CAAAGCGCCTTCATAGCCG 59.647 57.895 2.29 0.00 0.00 5.52
84 85 1.032114 ACCAAAGCGCCTTCATAGCC 61.032 55.000 2.29 0.00 0.00 3.93
85 86 0.811281 AACCAAAGCGCCTTCATAGC 59.189 50.000 2.29 0.00 0.00 2.97
86 87 1.133025 CCAACCAAAGCGCCTTCATAG 59.867 52.381 2.29 0.00 0.00 2.23
87 88 1.173043 CCAACCAAAGCGCCTTCATA 58.827 50.000 2.29 0.00 0.00 2.15
88 89 1.966762 CCAACCAAAGCGCCTTCAT 59.033 52.632 2.29 0.00 0.00 2.57
89 90 2.855514 GCCAACCAAAGCGCCTTCA 61.856 57.895 2.29 0.00 0.00 3.02
90 91 2.049156 GCCAACCAAAGCGCCTTC 60.049 61.111 2.29 0.00 0.00 3.46
91 92 3.977244 CGCCAACCAAAGCGCCTT 61.977 61.111 2.29 0.00 46.50 4.35
96 97 0.179097 TTGTTTCCGCCAACCAAAGC 60.179 50.000 0.00 0.00 0.00 3.51
97 98 1.136110 ACTTGTTTCCGCCAACCAAAG 59.864 47.619 0.00 0.00 0.00 2.77
98 99 1.187087 ACTTGTTTCCGCCAACCAAA 58.813 45.000 0.00 0.00 0.00 3.28
99 100 1.135333 GAACTTGTTTCCGCCAACCAA 59.865 47.619 0.00 0.00 0.00 3.67
100 101 0.741915 GAACTTGTTTCCGCCAACCA 59.258 50.000 0.00 0.00 0.00 3.67
101 102 1.001706 GAGAACTTGTTTCCGCCAACC 60.002 52.381 0.00 0.00 34.32 3.77
102 103 1.001706 GGAGAACTTGTTTCCGCCAAC 60.002 52.381 0.00 0.00 34.32 3.77
103 104 1.314730 GGAGAACTTGTTTCCGCCAA 58.685 50.000 0.00 0.00 34.32 4.52
104 105 0.181587 TGGAGAACTTGTTTCCGCCA 59.818 50.000 0.00 0.00 37.02 5.69
105 106 1.266989 CTTGGAGAACTTGTTTCCGCC 59.733 52.381 8.82 0.00 34.32 6.13
106 107 1.335051 GCTTGGAGAACTTGTTTCCGC 60.335 52.381 8.82 5.38 34.32 5.54
107 108 1.266989 GGCTTGGAGAACTTGTTTCCG 59.733 52.381 8.82 0.00 34.32 4.30
108 109 1.266989 CGGCTTGGAGAACTTGTTTCC 59.733 52.381 7.36 7.36 34.32 3.13
109 110 1.947456 ACGGCTTGGAGAACTTGTTTC 59.053 47.619 0.00 0.00 33.95 2.78
110 111 1.676006 CACGGCTTGGAGAACTTGTTT 59.324 47.619 0.00 0.00 0.00 2.83
111 112 1.308998 CACGGCTTGGAGAACTTGTT 58.691 50.000 0.00 0.00 0.00 2.83
112 113 3.006672 CACGGCTTGGAGAACTTGT 57.993 52.632 0.00 0.00 0.00 3.16
122 123 3.741476 GCCTTGCTCCACGGCTTG 61.741 66.667 5.58 0.00 44.01 4.01
126 127 3.121030 CTTCGCCTTGCTCCACGG 61.121 66.667 0.00 0.00 0.00 4.94
127 128 3.793144 GCTTCGCCTTGCTCCACG 61.793 66.667 0.00 0.00 0.00 4.94
128 129 3.793144 CGCTTCGCCTTGCTCCAC 61.793 66.667 0.00 0.00 0.00 4.02
129 130 3.529341 TTCGCTTCGCCTTGCTCCA 62.529 57.895 0.00 0.00 0.00 3.86
130 131 2.245714 CTTTCGCTTCGCCTTGCTCC 62.246 60.000 0.00 0.00 0.00 4.70
131 132 1.133458 CTTTCGCTTCGCCTTGCTC 59.867 57.895 0.00 0.00 0.00 4.26
132 133 2.328099 CCTTTCGCTTCGCCTTGCT 61.328 57.895 0.00 0.00 0.00 3.91
133 134 2.176792 CCTTTCGCTTCGCCTTGC 59.823 61.111 0.00 0.00 0.00 4.01
134 135 1.497722 GTCCTTTCGCTTCGCCTTG 59.502 57.895 0.00 0.00 0.00 3.61
135 136 1.671379 GGTCCTTTCGCTTCGCCTT 60.671 57.895 0.00 0.00 0.00 4.35
136 137 2.047179 GGTCCTTTCGCTTCGCCT 60.047 61.111 0.00 0.00 0.00 5.52
137 138 1.671379 AAGGTCCTTTCGCTTCGCC 60.671 57.895 0.00 0.00 0.00 5.54
138 139 1.497722 CAAGGTCCTTTCGCTTCGC 59.502 57.895 0.00 0.00 0.00 4.70
139 140 1.912371 GCCAAGGTCCTTTCGCTTCG 61.912 60.000 0.00 0.00 0.00 3.79
140 141 1.876664 GCCAAGGTCCTTTCGCTTC 59.123 57.895 0.00 0.00 0.00 3.86
141 142 1.966451 CGCCAAGGTCCTTTCGCTT 60.966 57.895 15.39 0.00 0.00 4.68
142 143 2.358737 CGCCAAGGTCCTTTCGCT 60.359 61.111 15.39 0.00 0.00 4.93
143 144 1.912371 CTTCGCCAAGGTCCTTTCGC 61.912 60.000 14.99 12.39 0.00 4.70
144 145 0.320421 TCTTCGCCAAGGTCCTTTCG 60.320 55.000 14.05 14.05 0.00 3.46
145 146 1.443802 CTCTTCGCCAAGGTCCTTTC 58.556 55.000 0.00 0.00 0.00 2.62
146 147 0.606673 GCTCTTCGCCAAGGTCCTTT 60.607 55.000 0.00 0.00 0.00 3.11
147 148 1.003233 GCTCTTCGCCAAGGTCCTT 60.003 57.895 0.00 0.00 0.00 3.36
148 149 1.484444 AAGCTCTTCGCCAAGGTCCT 61.484 55.000 0.00 0.00 40.39 3.85
149 150 1.003233 AAGCTCTTCGCCAAGGTCC 60.003 57.895 0.00 0.00 40.39 4.46
150 151 1.301677 CCAAGCTCTTCGCCAAGGTC 61.302 60.000 0.00 0.00 40.39 3.85
151 152 1.302832 CCAAGCTCTTCGCCAAGGT 60.303 57.895 0.00 0.00 40.39 3.50
152 153 2.694760 GCCAAGCTCTTCGCCAAGG 61.695 63.158 0.00 0.00 40.39 3.61
153 154 2.694760 GGCCAAGCTCTTCGCCAAG 61.695 63.158 12.37 0.00 44.64 3.61
154 155 2.672996 GGCCAAGCTCTTCGCCAA 60.673 61.111 12.37 0.00 44.64 4.52
156 157 3.435186 GTGGCCAAGCTCTTCGCC 61.435 66.667 7.24 10.69 45.33 5.54
157 158 2.192608 CTTGTGGCCAAGCTCTTCGC 62.193 60.000 7.24 0.00 41.51 4.70
158 159 0.603707 TCTTGTGGCCAAGCTCTTCG 60.604 55.000 7.24 0.00 46.33 3.79
159 160 1.471684 CATCTTGTGGCCAAGCTCTTC 59.528 52.381 7.24 0.00 46.33 2.87
160 161 1.542492 CATCTTGTGGCCAAGCTCTT 58.458 50.000 7.24 0.00 46.33 2.85
161 162 0.323178 CCATCTTGTGGCCAAGCTCT 60.323 55.000 7.24 0.00 46.33 4.09
162 163 2.187073 CCATCTTGTGGCCAAGCTC 58.813 57.895 7.24 0.00 46.33 4.09
163 164 4.428845 CCATCTTGTGGCCAAGCT 57.571 55.556 7.24 0.00 46.33 3.74
171 172 5.242393 CCCAATTAGCCTTATCCATCTTGTG 59.758 44.000 0.00 0.00 0.00 3.33
172 173 5.388654 CCCAATTAGCCTTATCCATCTTGT 58.611 41.667 0.00 0.00 0.00 3.16
173 174 4.219288 GCCCAATTAGCCTTATCCATCTTG 59.781 45.833 0.00 0.00 0.00 3.02
174 175 4.411013 GCCCAATTAGCCTTATCCATCTT 58.589 43.478 0.00 0.00 0.00 2.40
175 176 3.560025 CGCCCAATTAGCCTTATCCATCT 60.560 47.826 0.00 0.00 0.00 2.90
176 177 2.749621 CGCCCAATTAGCCTTATCCATC 59.250 50.000 0.00 0.00 0.00 3.51
177 178 2.375174 TCGCCCAATTAGCCTTATCCAT 59.625 45.455 0.00 0.00 0.00 3.41
178 179 1.771854 TCGCCCAATTAGCCTTATCCA 59.228 47.619 0.00 0.00 0.00 3.41
179 180 2.561478 TCGCCCAATTAGCCTTATCC 57.439 50.000 0.00 0.00 0.00 2.59
180 181 4.833390 ACTATCGCCCAATTAGCCTTATC 58.167 43.478 0.00 0.00 0.00 1.75
181 182 4.620803 CGACTATCGCCCAATTAGCCTTAT 60.621 45.833 0.00 0.00 31.14 1.73
182 183 3.305813 CGACTATCGCCCAATTAGCCTTA 60.306 47.826 0.00 0.00 31.14 2.69
183 184 2.548067 CGACTATCGCCCAATTAGCCTT 60.548 50.000 0.00 0.00 31.14 4.35
184 185 1.000955 CGACTATCGCCCAATTAGCCT 59.999 52.381 0.00 0.00 31.14 4.58
185 186 1.000506 TCGACTATCGCCCAATTAGCC 59.999 52.381 0.00 0.00 40.21 3.93
186 187 2.433868 TCGACTATCGCCCAATTAGC 57.566 50.000 0.00 0.00 40.21 3.09
187 188 4.023107 TCTCTTCGACTATCGCCCAATTAG 60.023 45.833 0.00 0.00 40.21 1.73
188 189 3.887110 TCTCTTCGACTATCGCCCAATTA 59.113 43.478 0.00 0.00 40.21 1.40
189 190 2.693591 TCTCTTCGACTATCGCCCAATT 59.306 45.455 0.00 0.00 40.21 2.32
190 191 2.294791 CTCTCTTCGACTATCGCCCAAT 59.705 50.000 0.00 0.00 40.21 3.16
191 192 1.676529 CTCTCTTCGACTATCGCCCAA 59.323 52.381 0.00 0.00 40.21 4.12
192 193 1.309950 CTCTCTTCGACTATCGCCCA 58.690 55.000 0.00 0.00 40.21 5.36
193 194 1.310904 ACTCTCTTCGACTATCGCCC 58.689 55.000 0.00 0.00 40.21 6.13
194 195 2.096119 GCTACTCTCTTCGACTATCGCC 60.096 54.545 0.00 0.00 40.21 5.54
195 196 2.096119 GGCTACTCTCTTCGACTATCGC 60.096 54.545 0.00 0.00 40.21 4.58
196 197 2.156117 CGGCTACTCTCTTCGACTATCG 59.844 54.545 0.00 0.00 42.10 2.92
197 198 2.096119 GCGGCTACTCTCTTCGACTATC 60.096 54.545 0.00 0.00 0.00 2.08
198 199 1.874872 GCGGCTACTCTCTTCGACTAT 59.125 52.381 0.00 0.00 0.00 2.12
199 200 1.297664 GCGGCTACTCTCTTCGACTA 58.702 55.000 0.00 0.00 0.00 2.59
200 201 1.707239 CGCGGCTACTCTCTTCGACT 61.707 60.000 0.00 0.00 0.00 4.18
201 202 1.297745 CGCGGCTACTCTCTTCGAC 60.298 63.158 0.00 0.00 0.00 4.20
202 203 1.703438 GACGCGGCTACTCTCTTCGA 61.703 60.000 12.47 0.00 0.00 3.71
203 204 1.297745 GACGCGGCTACTCTCTTCG 60.298 63.158 12.47 0.00 0.00 3.79
204 205 1.297745 CGACGCGGCTACTCTCTTC 60.298 63.158 11.76 0.00 0.00 2.87
205 206 2.762234 CCGACGCGGCTACTCTCTT 61.762 63.158 11.76 0.00 41.17 2.85
206 207 3.203412 CCGACGCGGCTACTCTCT 61.203 66.667 11.76 0.00 41.17 3.10
207 208 4.253257 CCCGACGCGGCTACTCTC 62.253 72.222 11.76 0.00 46.86 3.20
216 217 4.439472 CCGAAAAAGCCCGACGCG 62.439 66.667 3.53 3.53 44.76 6.01
217 218 4.753877 GCCGAAAAAGCCCGACGC 62.754 66.667 0.00 0.00 37.98 5.19
218 219 3.308878 CTGCCGAAAAAGCCCGACG 62.309 63.158 0.00 0.00 0.00 5.12
219 220 2.561373 CTGCCGAAAAAGCCCGAC 59.439 61.111 0.00 0.00 0.00 4.79
220 221 3.361977 GCTGCCGAAAAAGCCCGA 61.362 61.111 0.00 0.00 33.12 5.14
221 222 3.615536 CTGCTGCCGAAAAAGCCCG 62.616 63.158 0.00 0.00 38.71 6.13
222 223 1.805428 TTCTGCTGCCGAAAAAGCCC 61.805 55.000 3.93 0.00 38.71 5.19
223 224 0.244721 ATTCTGCTGCCGAAAAAGCC 59.755 50.000 10.49 0.00 38.71 4.35
224 225 1.068333 TCATTCTGCTGCCGAAAAAGC 60.068 47.619 10.49 0.00 39.96 3.51
225 226 2.995466 TCATTCTGCTGCCGAAAAAG 57.005 45.000 10.49 4.65 0.00 2.27
226 227 4.142403 CCTTATCATTCTGCTGCCGAAAAA 60.142 41.667 10.49 2.78 0.00 1.94
227 228 3.378112 CCTTATCATTCTGCTGCCGAAAA 59.622 43.478 10.49 3.12 0.00 2.29
228 229 2.945008 CCTTATCATTCTGCTGCCGAAA 59.055 45.455 10.49 0.00 0.00 3.46
229 230 2.564771 CCTTATCATTCTGCTGCCGAA 58.435 47.619 8.92 8.92 0.00 4.30
230 231 1.202687 CCCTTATCATTCTGCTGCCGA 60.203 52.381 0.00 0.00 0.00 5.54
231 232 1.233019 CCCTTATCATTCTGCTGCCG 58.767 55.000 0.00 0.00 0.00 5.69
232 233 0.957362 GCCCTTATCATTCTGCTGCC 59.043 55.000 0.00 0.00 0.00 4.85
233 234 0.957362 GGCCCTTATCATTCTGCTGC 59.043 55.000 0.00 0.00 0.00 5.25
234 235 2.502295 GAGGCCCTTATCATTCTGCTG 58.498 52.381 0.00 0.00 0.00 4.41
235 236 1.071385 CGAGGCCCTTATCATTCTGCT 59.929 52.381 0.00 0.00 0.00 4.24
236 237 1.517242 CGAGGCCCTTATCATTCTGC 58.483 55.000 0.00 0.00 0.00 4.26
237 238 1.071385 AGCGAGGCCCTTATCATTCTG 59.929 52.381 0.00 0.00 0.00 3.02
238 239 1.428869 AGCGAGGCCCTTATCATTCT 58.571 50.000 0.00 0.00 0.00 2.40
239 240 2.147150 GAAGCGAGGCCCTTATCATTC 58.853 52.381 0.00 0.00 0.00 2.67
240 241 1.490490 TGAAGCGAGGCCCTTATCATT 59.510 47.619 0.00 0.00 0.00 2.57
241 242 1.131638 TGAAGCGAGGCCCTTATCAT 58.868 50.000 0.00 0.00 0.00 2.45
242 243 1.131638 ATGAAGCGAGGCCCTTATCA 58.868 50.000 0.00 0.00 0.00 2.15
243 244 1.876156 CAATGAAGCGAGGCCCTTATC 59.124 52.381 0.00 0.00 0.00 1.75
244 245 1.477558 CCAATGAAGCGAGGCCCTTAT 60.478 52.381 0.00 0.00 0.00 1.73
245 246 0.107214 CCAATGAAGCGAGGCCCTTA 60.107 55.000 0.00 0.00 0.00 2.69
246 247 1.379044 CCAATGAAGCGAGGCCCTT 60.379 57.895 0.00 0.00 0.00 3.95
247 248 2.273449 CCAATGAAGCGAGGCCCT 59.727 61.111 0.00 0.00 0.00 5.19
248 249 2.044946 ACCAATGAAGCGAGGCCC 60.045 61.111 0.00 0.00 0.00 5.80
249 250 2.409870 CCACCAATGAAGCGAGGCC 61.410 63.158 0.00 0.00 0.00 5.19
253 254 0.251916 CCCTACCACCAATGAAGCGA 59.748 55.000 0.00 0.00 0.00 4.93
255 256 2.215942 AACCCTACCACCAATGAAGC 57.784 50.000 0.00 0.00 0.00 3.86
269 270 0.466739 GTTCCACCAACGGAAACCCT 60.467 55.000 0.00 0.00 46.51 4.34
289 290 3.636231 CCAGAGGCGGTGTTGGGA 61.636 66.667 0.00 0.00 0.00 4.37
320 321 6.112734 ACACACACTTGAACAAGAACTCATA 58.887 36.000 19.35 0.00 40.79 2.15
367 370 2.374184 CAAAGTTTCTCACCACCCACA 58.626 47.619 0.00 0.00 0.00 4.17
558 599 6.013689 GCGAGGTTAATTAAGAACGTTTCTG 58.986 40.000 0.46 0.00 40.59 3.02
581 622 1.314730 TTTTCCGGTTGTTGAGAGGC 58.685 50.000 0.00 0.00 0.00 4.70
860 933 4.857871 TCTTAAGCGTCATTGAATTCGG 57.142 40.909 0.04 0.00 0.00 4.30
960 1035 0.661552 CTTGGCCGAGAATGCATCTG 59.338 55.000 15.76 0.00 38.96 2.90
961 1036 0.465097 CCTTGGCCGAGAATGCATCT 60.465 55.000 22.68 0.00 42.61 2.90
962 1037 2.028130 CCTTGGCCGAGAATGCATC 58.972 57.895 22.68 0.00 0.00 3.91
990 1077 6.935240 AGCTACTTATATACCAGGCATTCA 57.065 37.500 0.00 0.00 0.00 2.57
996 1083 8.700051 AGCATATGAAGCTACTTATATACCAGG 58.300 37.037 6.97 0.00 41.32 4.45
998 1085 8.406297 CGAGCATATGAAGCTACTTATATACCA 58.594 37.037 6.97 0.00 43.58 3.25
999 1086 8.622157 TCGAGCATATGAAGCTACTTATATACC 58.378 37.037 6.97 0.00 43.58 2.73
1000 1087 9.658475 CTCGAGCATATGAAGCTACTTATATAC 57.342 37.037 6.97 0.00 43.58 1.47
1018 1117 0.178767 TGTTGCCATAGCTCGAGCAT 59.821 50.000 36.87 24.57 45.16 3.79
1019 1118 0.740868 GTGTTGCCATAGCTCGAGCA 60.741 55.000 36.87 23.50 45.16 4.26
1064 1175 1.596895 GGACGGGAAGAGAGAAGCGT 61.597 60.000 0.00 0.00 0.00 5.07
1066 1177 0.608640 TTGGACGGGAAGAGAGAAGC 59.391 55.000 0.00 0.00 0.00 3.86
1068 1179 5.425539 AGATTAATTGGACGGGAAGAGAGAA 59.574 40.000 0.00 0.00 0.00 2.87
1080 1196 6.363896 GCTAGCTCGACTAAGATTAATTGGAC 59.636 42.308 7.70 0.00 0.00 4.02
1135 1294 3.581755 CACAAACCATCAGATTTGCAGG 58.418 45.455 0.00 0.00 39.03 4.85
1151 1319 0.599558 GAGGAGCAGCAATGCACAAA 59.400 50.000 8.35 0.00 37.25 2.83
1194 1362 0.463295 CGATCTGCAGTGGCCAGAAT 60.463 55.000 14.67 0.00 40.13 2.40
1282 1450 2.679996 GCCATTGCCGGGGTTCTT 60.680 61.111 2.18 0.00 0.00 2.52
1356 1530 9.767684 CATAGATGTTTGCAAGTTCGTTTATAA 57.232 29.630 0.00 0.00 0.00 0.98
1357 1531 8.941977 ACATAGATGTTTGCAAGTTCGTTTATA 58.058 29.630 0.00 0.00 37.90 0.98
1358 1532 7.816640 ACATAGATGTTTGCAAGTTCGTTTAT 58.183 30.769 0.00 0.00 37.90 1.40
1359 1533 7.197071 ACATAGATGTTTGCAAGTTCGTTTA 57.803 32.000 0.00 0.00 37.90 2.01
1360 1534 6.072112 ACATAGATGTTTGCAAGTTCGTTT 57.928 33.333 0.00 0.00 37.90 3.60
1361 1535 5.689383 ACATAGATGTTTGCAAGTTCGTT 57.311 34.783 0.00 0.00 37.90 3.85
1362 1536 5.699001 TGTACATAGATGTTTGCAAGTTCGT 59.301 36.000 0.00 0.00 41.97 3.85
1363 1537 6.164408 TGTACATAGATGTTTGCAAGTTCG 57.836 37.500 0.00 0.00 41.97 3.95
1367 1541 7.132694 TCAGTTGTACATAGATGTTTGCAAG 57.867 36.000 0.00 0.00 41.97 4.01
1423 1630 3.466836 GACGCATCACATCCCTAATCAA 58.533 45.455 0.00 0.00 0.00 2.57
1442 1649 3.139469 GGGTCGAGGAGGACGGAC 61.139 72.222 0.00 0.00 37.82 4.79
1696 1913 2.747855 CCAGGAACTTGAGCGGCC 60.748 66.667 0.00 0.00 34.60 6.13
2195 2412 2.094649 GCTGTACCACTCCACTCAGTAC 60.095 54.545 0.00 0.00 35.08 2.73
2200 2417 0.390472 GCAGCTGTACCACTCCACTC 60.390 60.000 16.64 0.00 0.00 3.51
2256 2497 6.237969 GGTTAGAGCAAAGAATGAATCGAGAC 60.238 42.308 0.00 0.00 0.00 3.36
2346 2592 8.942338 ACAAAGAAATAACCAAAGAGAAAACC 57.058 30.769 0.00 0.00 0.00 3.27
2492 2751 9.295825 TGTCTATTGGTGTACATCTTCAATTTT 57.704 29.630 7.81 0.00 31.55 1.82
2493 2752 8.862325 TGTCTATTGGTGTACATCTTCAATTT 57.138 30.769 7.81 0.00 31.55 1.82
2494 2753 8.896744 CATGTCTATTGGTGTACATCTTCAATT 58.103 33.333 7.81 1.37 30.32 2.32
2495 2754 7.012704 GCATGTCTATTGGTGTACATCTTCAAT 59.987 37.037 7.81 12.93 30.32 2.57
2498 2757 5.817296 TGCATGTCTATTGGTGTACATCTTC 59.183 40.000 7.81 0.00 30.32 2.87
2584 2882 0.251165 AGTTTGGTAGTTGCGGCCAT 60.251 50.000 2.24 0.00 31.71 4.40
2586 2884 0.671796 AAAGTTTGGTAGTTGCGGCC 59.328 50.000 0.00 0.00 0.00 6.13
2631 2929 0.540365 CAGGTTGATGGGTGCAGGTT 60.540 55.000 0.00 0.00 0.00 3.50
2660 2958 3.270877 GTGACATTGTTCTAGGGCGAAT 58.729 45.455 0.00 0.00 0.00 3.34
2662 2960 1.621317 TGTGACATTGTTCTAGGGCGA 59.379 47.619 0.00 0.00 0.00 5.54
2663 2961 2.002586 CTGTGACATTGTTCTAGGGCG 58.997 52.381 0.00 0.00 0.00 6.13
2664 2962 1.740025 GCTGTGACATTGTTCTAGGGC 59.260 52.381 0.00 0.00 0.00 5.19
2665 2963 3.055530 AGAGCTGTGACATTGTTCTAGGG 60.056 47.826 0.00 0.00 0.00 3.53
2666 2964 4.081752 AGAGAGCTGTGACATTGTTCTAGG 60.082 45.833 0.00 0.00 0.00 3.02
2667 2965 5.070770 AGAGAGCTGTGACATTGTTCTAG 57.929 43.478 0.00 0.00 0.00 2.43
2668 2966 4.081972 GGAGAGAGCTGTGACATTGTTCTA 60.082 45.833 0.00 0.00 0.00 2.10
2669 2967 3.306641 GGAGAGAGCTGTGACATTGTTCT 60.307 47.826 0.00 0.00 0.00 3.01
2670 2968 2.999355 GGAGAGAGCTGTGACATTGTTC 59.001 50.000 0.00 0.00 0.00 3.18
2705 3009 3.233980 TCGCCGGAGATGGGGATG 61.234 66.667 5.05 0.00 45.08 3.51
2709 3013 2.520982 TACCTCGCCGGAGATGGG 60.521 66.667 21.33 17.00 43.27 4.00
2710 3014 1.828660 AGTACCTCGCCGGAGATGG 60.829 63.158 8.83 14.51 43.27 3.51
2711 3015 1.360551 CAGTACCTCGCCGGAGATG 59.639 63.158 8.83 8.85 43.27 2.90
2760 3064 1.129326 GACGACACGAGGAACAACAG 58.871 55.000 0.00 0.00 0.00 3.16
2763 3067 1.364901 GGGACGACACGAGGAACAA 59.635 57.895 0.00 0.00 0.00 2.83
2764 3068 2.567497 GGGGACGACACGAGGAACA 61.567 63.158 0.00 0.00 0.00 3.18
2796 3117 1.411493 GGCGTCGGTCGATTTCAGAC 61.411 60.000 0.00 0.00 42.86 3.51
2830 3151 0.673985 GTTTTGCCAACTCAGGTCCC 59.326 55.000 0.00 0.00 0.00 4.46
2842 3163 6.280855 ACTGAGGTAATTAATGGTTTTGCC 57.719 37.500 0.00 0.00 37.90 4.52
2853 3174 3.688694 ACGCACCAACTGAGGTAATTA 57.311 42.857 0.00 0.00 40.77 1.40
2879 3200 5.391256 TGCGAGAGGGGAAAGAATACTATA 58.609 41.667 0.00 0.00 0.00 1.31
2915 3236 5.701290 TGAAGATCGAAGGGAAGAAAACTTC 59.299 40.000 0.00 0.00 37.76 3.01
2919 3240 4.324267 GGTGAAGATCGAAGGGAAGAAAA 58.676 43.478 0.00 0.00 0.00 2.29
2920 3241 3.616560 CGGTGAAGATCGAAGGGAAGAAA 60.617 47.826 0.00 0.00 0.00 2.52
3114 3486 2.219458 CTGAGCTCCGTCTAATCCGTA 58.781 52.381 12.15 0.00 0.00 4.02
3133 3505 0.462759 GCTGGCAAGAATCTACGCCT 60.463 55.000 20.08 0.00 45.13 5.52
3168 3540 1.336609 GCACGACGAGAAACCCTAACT 60.337 52.381 0.00 0.00 0.00 2.24
3199 3572 3.668447 AGAACATGACAGCAAATCTCGT 58.332 40.909 0.00 0.00 0.00 4.18
3209 3583 2.951726 TCGCTCTGAAGAACATGACAG 58.048 47.619 0.00 1.31 0.00 3.51
3215 3589 3.006859 TCCTTGAATCGCTCTGAAGAACA 59.993 43.478 0.00 0.00 0.00 3.18
3226 3600 2.735823 GCCATTGAATCCTTGAATCGC 58.264 47.619 0.00 0.00 0.00 4.58
3301 3675 1.749063 TGACCTTATCGATGACAGCGT 59.251 47.619 13.44 3.34 0.00 5.07
3302 3676 2.492019 TGACCTTATCGATGACAGCG 57.508 50.000 8.54 6.80 0.00 5.18
3326 3701 1.152440 CCCCTCTCATACCGGAGCT 60.152 63.158 9.46 0.00 34.84 4.09
3356 3731 1.890041 CCGCCAGAACAACCGTTGA 60.890 57.895 18.19 0.00 34.75 3.18
3357 3732 2.637025 CCGCCAGAACAACCGTTG 59.363 61.111 9.80 9.80 34.75 4.10
3358 3733 3.284449 GCCGCCAGAACAACCGTT 61.284 61.111 0.00 0.00 38.33 4.44
3443 3846 5.855045 GACCTATTATGAAGATTCACCCGT 58.145 41.667 0.00 0.00 40.49 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.