Multiple sequence alignment - TraesCS3D01G371400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G371400 chr3D 100.000 2468 0 0 1 2468 484809965 484807498 0.000000e+00 4558.0
1 TraesCS3D01G371400 chr3B 85.538 1293 85 46 747 1980 647546485 647545236 0.000000e+00 1258.0
2 TraesCS3D01G371400 chr3B 90.649 385 33 2 2085 2468 647545212 647544830 2.190000e-140 508.0
3 TraesCS3D01G371400 chr3B 90.415 313 24 6 175 485 647547013 647546705 8.220000e-110 407.0
4 TraesCS3D01G371400 chr3B 100.000 28 0 0 2055 2082 647545233 647545206 4.000000e-03 52.8
5 TraesCS3D01G371400 chr3A 84.284 1069 73 37 745 1757 627822576 627821547 0.000000e+00 955.0
6 TraesCS3D01G371400 chr3A 88.991 545 51 8 1 541 627825447 627824908 0.000000e+00 665.0
7 TraesCS3D01G371400 chr3A 91.005 378 31 3 2092 2468 627820096 627819721 7.880000e-140 507.0
8 TraesCS3D01G371400 chr3A 88.732 426 24 4 1970 2393 627707492 627707089 1.320000e-137 499.0
9 TraesCS3D01G371400 chr3A 94.048 84 5 0 2385 2468 627706984 627706901 7.160000e-26 128.0
10 TraesCS3D01G371400 chr3A 88.889 108 7 1 1756 1858 627821242 627821135 7.160000e-26 128.0
11 TraesCS3D01G371400 chr3A 88.679 53 6 0 2350 2402 627678196 627678248 5.700000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G371400 chr3D 484807498 484809965 2467 True 4558.00 4558 100.00000 1 2468 1 chr3D.!!$R1 2467
1 TraesCS3D01G371400 chr3B 647544830 647547013 2183 True 556.45 1258 91.65050 175 2468 4 chr3B.!!$R1 2293
2 TraesCS3D01G371400 chr3A 627819721 627825447 5726 True 563.75 955 88.29225 1 2468 4 chr3A.!!$R2 2467
3 TraesCS3D01G371400 chr3A 627706901 627707492 591 True 313.50 499 91.39000 1970 2468 2 chr3A.!!$R1 498

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
681 747 0.101399 CCTGAATGCTCGAGCGTAGT 59.899 55.0 31.2 17.83 45.83 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1790 4336 0.171679 TGCAGCAATGAAAGCCATCG 59.828 50.0 0.0 0.0 33.53 3.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
166 168 9.730705 ATGATGATGTTGATATACTAACCCTTG 57.269 33.333 0.00 0.00 0.00 3.61
167 169 7.661437 TGATGATGTTGATATACTAACCCTTGC 59.339 37.037 0.00 0.00 0.00 4.01
214 216 0.761702 GGCGTACCATCCCCTTCCTA 60.762 60.000 0.00 0.00 35.26 2.94
226 228 1.838077 CCCTTCCTATTTGTCCGAGGT 59.162 52.381 0.00 0.00 0.00 3.85
284 286 3.127081 CGTGAGCCATGAAGTTTGATG 57.873 47.619 0.00 0.00 0.00 3.07
304 306 0.466922 GGGGGATCCTGCTGATTGTG 60.467 60.000 12.58 0.00 32.41 3.33
327 329 2.993899 ACTATGAGTAGTGTGCGTTTGC 59.006 45.455 0.00 0.00 39.66 3.68
328 330 1.156736 ATGAGTAGTGTGCGTTTGCC 58.843 50.000 0.00 0.00 41.78 4.52
344 346 1.225426 GCCCAGCAGATGACATGGA 59.775 57.895 0.00 0.00 34.60 3.41
394 398 2.340731 TGGACTGTAGGGTTTTAGCCA 58.659 47.619 0.00 0.00 38.48 4.75
397 401 3.597255 GACTGTAGGGTTTTAGCCAGTC 58.403 50.000 0.00 0.00 41.16 3.51
434 439 5.416013 TGTAACAACAACTCCATGTGTTTGA 59.584 36.000 1.54 0.00 32.81 2.69
436 441 5.596836 ACAACAACTCCATGTGTTTGAAT 57.403 34.783 0.00 0.00 32.81 2.57
440 445 5.591099 ACAACTCCATGTGTTTGAATTCAC 58.409 37.500 7.89 0.00 35.43 3.18
441 446 5.126869 ACAACTCCATGTGTTTGAATTCACA 59.873 36.000 7.89 3.76 46.23 3.58
448 454 5.833406 TGTGTTTGAATTCACATGACTGT 57.167 34.783 7.89 0.00 39.23 3.55
466 472 2.808543 CTGTGGTGCCAGTTTCTTCTAC 59.191 50.000 0.00 0.00 0.00 2.59
467 473 2.438021 TGTGGTGCCAGTTTCTTCTACT 59.562 45.455 0.00 0.00 0.00 2.57
489 527 7.772332 ACTCCATGTCAAACTAATATCGTTC 57.228 36.000 0.00 0.00 0.00 3.95
493 531 6.017934 CCATGTCAAACTAATATCGTTCTGGG 60.018 42.308 0.00 0.00 0.00 4.45
499 537 9.104965 TCAAACTAATATCGTTCTGGGTTAATG 57.895 33.333 0.00 0.00 0.00 1.90
508 546 4.142038 GTTCTGGGTTAATGTGTGGTCTT 58.858 43.478 0.00 0.00 0.00 3.01
510 548 3.137544 TCTGGGTTAATGTGTGGTCTTGT 59.862 43.478 0.00 0.00 0.00 3.16
516 554 3.648339 AATGTGTGGTCTTGTGCAATC 57.352 42.857 0.00 0.00 0.00 2.67
518 556 1.948834 TGTGTGGTCTTGTGCAATCAG 59.051 47.619 0.00 0.00 0.00 2.90
541 583 2.366916 AGTGCTCTGAATCCTATTCCCG 59.633 50.000 0.00 0.00 0.00 5.14
542 584 1.694150 TGCTCTGAATCCTATTCCCGG 59.306 52.381 0.00 0.00 0.00 5.73
546 588 2.158813 TCTGAATCCTATTCCCGGCAAC 60.159 50.000 0.00 0.00 0.00 4.17
558 600 3.660111 GGCAACCGAAAGTGCGCT 61.660 61.111 9.73 0.00 0.00 5.92
559 601 2.331451 GCAACCGAAAGTGCGCTT 59.669 55.556 9.73 6.71 36.30 4.68
560 602 2.010817 GCAACCGAAAGTGCGCTTG 61.011 57.895 14.36 3.64 34.71 4.01
561 603 1.355210 CAACCGAAAGTGCGCTTGT 59.645 52.632 14.36 4.35 34.71 3.16
562 604 0.929824 CAACCGAAAGTGCGCTTGTG 60.930 55.000 14.36 8.95 34.71 3.33
564 606 1.369209 CCGAAAGTGCGCTTGTGTG 60.369 57.895 14.36 3.82 34.71 3.82
565 607 1.641140 CGAAAGTGCGCTTGTGTGA 59.359 52.632 14.36 0.00 34.71 3.58
567 609 1.678360 GAAAGTGCGCTTGTGTGATG 58.322 50.000 14.36 0.00 34.71 3.07
568 610 0.311790 AAAGTGCGCTTGTGTGATGG 59.688 50.000 14.36 0.00 34.71 3.51
569 611 0.819259 AAGTGCGCTTGTGTGATGGT 60.819 50.000 12.68 0.00 32.92 3.55
571 613 1.525765 TGCGCTTGTGTGATGGTGT 60.526 52.632 9.73 0.00 0.00 4.16
573 615 1.086696 GCGCTTGTGTGATGGTGTAT 58.913 50.000 0.00 0.00 0.00 2.29
576 618 2.349580 CGCTTGTGTGATGGTGTATGAG 59.650 50.000 0.00 0.00 0.00 2.90
577 619 3.338249 GCTTGTGTGATGGTGTATGAGT 58.662 45.455 0.00 0.00 0.00 3.41
585 651 7.710475 TGTGTGATGGTGTATGAGTACATTATG 59.290 37.037 0.00 0.00 42.43 1.90
586 652 7.710907 GTGTGATGGTGTATGAGTACATTATGT 59.289 37.037 2.58 2.58 42.43 2.29
588 654 9.109393 GTGATGGTGTATGAGTACATTATGTTT 57.891 33.333 2.23 0.00 42.43 2.83
593 659 8.395633 GGTGTATGAGTACATTATGTTTGGAAC 58.604 37.037 2.23 0.00 42.43 3.62
628 694 3.572255 TGGTGCAGAGGTTTGTAAAATCC 59.428 43.478 0.00 0.00 0.00 3.01
632 698 4.278170 TGCAGAGGTTTGTAAAATCCACTG 59.722 41.667 13.22 13.22 40.06 3.66
642 708 3.557903 AATCCACTGCACTGCGCCT 62.558 57.895 4.18 0.00 41.33 5.52
665 731 1.529010 TGGTGTTGCCAGAAGCCTG 60.529 57.895 0.00 0.00 43.61 4.85
666 732 1.228245 GGTGTTGCCAGAAGCCTGA 60.228 57.895 0.00 0.00 43.02 3.86
667 733 0.823356 GGTGTTGCCAGAAGCCTGAA 60.823 55.000 0.00 0.00 43.02 3.02
669 735 1.068055 GTGTTGCCAGAAGCCTGAATG 60.068 52.381 0.00 0.00 43.02 2.67
670 736 0.108945 GTTGCCAGAAGCCTGAATGC 60.109 55.000 0.00 0.00 43.02 3.56
671 737 0.251474 TTGCCAGAAGCCTGAATGCT 60.251 50.000 0.00 0.00 45.43 3.79
672 738 0.679002 TGCCAGAAGCCTGAATGCTC 60.679 55.000 0.00 0.00 41.80 4.26
673 739 1.712977 GCCAGAAGCCTGAATGCTCG 61.713 60.000 0.00 0.00 41.80 5.03
674 740 0.107993 CCAGAAGCCTGAATGCTCGA 60.108 55.000 0.00 0.00 41.80 4.04
676 742 0.461693 AGAAGCCTGAATGCTCGAGC 60.462 55.000 30.42 30.42 41.80 5.03
677 743 1.760268 GAAGCCTGAATGCTCGAGCG 61.760 60.000 30.75 17.12 45.83 5.03
678 744 2.510238 GCCTGAATGCTCGAGCGT 60.510 61.111 30.75 28.61 45.83 5.07
680 746 1.211818 GCCTGAATGCTCGAGCGTAG 61.212 60.000 31.20 24.21 45.83 3.51
681 747 0.101399 CCTGAATGCTCGAGCGTAGT 59.899 55.000 31.20 17.83 45.83 2.73
682 748 1.469940 CCTGAATGCTCGAGCGTAGTT 60.470 52.381 31.20 21.79 45.83 2.24
683 749 2.223502 CCTGAATGCTCGAGCGTAGTTA 60.224 50.000 31.20 13.98 45.83 2.24
685 751 3.629058 TGAATGCTCGAGCGTAGTTATC 58.371 45.455 31.20 23.51 45.83 1.75
686 752 2.708386 ATGCTCGAGCGTAGTTATCC 57.292 50.000 30.14 1.16 45.83 2.59
687 753 1.385528 TGCTCGAGCGTAGTTATCCA 58.614 50.000 30.75 7.80 45.83 3.41
693 1079 4.891260 TCGAGCGTAGTTATCCATCTCTA 58.109 43.478 0.00 0.00 0.00 2.43
700 1086 6.682746 CGTAGTTATCCATCTCTACAGCATT 58.317 40.000 0.00 0.00 34.32 3.56
703 1089 9.331282 GTAGTTATCCATCTCTACAGCATTTTT 57.669 33.333 0.00 0.00 34.67 1.94
705 1091 8.049117 AGTTATCCATCTCTACAGCATTTTTGA 58.951 33.333 0.00 0.00 0.00 2.69
706 1092 8.677300 GTTATCCATCTCTACAGCATTTTTGAA 58.323 33.333 0.00 0.00 0.00 2.69
707 1093 7.707624 ATCCATCTCTACAGCATTTTTGAAA 57.292 32.000 0.00 0.00 0.00 2.69
708 1094 7.707624 TCCATCTCTACAGCATTTTTGAAAT 57.292 32.000 0.00 0.00 0.00 2.17
710 1096 9.241919 TCCATCTCTACAGCATTTTTGAAATAA 57.758 29.630 0.00 0.00 0.00 1.40
738 2618 2.235891 GTTGTTCCGTGAAATTCCCCT 58.764 47.619 0.00 0.00 0.00 4.79
739 2619 2.194201 TGTTCCGTGAAATTCCCCTC 57.806 50.000 0.00 0.00 0.00 4.30
745 2910 2.487265 CCGTGAAATTCCCCTCCCATAG 60.487 54.545 0.00 0.00 0.00 2.23
747 2912 3.118038 CGTGAAATTCCCCTCCCATAGAA 60.118 47.826 0.00 0.00 0.00 2.10
748 2913 4.627741 CGTGAAATTCCCCTCCCATAGAAA 60.628 45.833 0.00 0.00 0.00 2.52
750 2915 5.360999 GTGAAATTCCCCTCCCATAGAAAAG 59.639 44.000 0.00 0.00 0.00 2.27
835 3012 1.226802 CTCCGAGACCACAGCATCG 60.227 63.158 0.00 0.00 35.02 3.84
856 3033 3.685550 CGGAAATATTCTCCTGGGCAAGT 60.686 47.826 12.12 0.00 0.00 3.16
857 3034 3.633986 GGAAATATTCTCCTGGGCAAGTG 59.366 47.826 0.00 0.00 0.00 3.16
858 3035 2.355010 ATATTCTCCTGGGCAAGTGC 57.645 50.000 0.00 0.00 41.14 4.40
886 3063 5.707764 GTGGGATAAATTGATAGGAGGAAGC 59.292 44.000 0.00 0.00 0.00 3.86
887 3064 5.222130 TGGGATAAATTGATAGGAGGAAGCC 60.222 44.000 0.00 0.00 0.00 4.35
911 3088 1.082104 GGCAAGTTGAAAGTCGCCG 60.082 57.895 7.16 0.00 0.00 6.46
914 3091 0.234884 CAAGTTGAAAGTCGCCGTCC 59.765 55.000 0.00 0.00 0.00 4.79
926 3103 2.919494 GCCGTCCTGTTTGCCTTGG 61.919 63.158 0.00 0.00 0.00 3.61
928 3105 2.192861 CGTCCTGTTTGCCTTGGCA 61.193 57.895 10.65 10.65 0.00 4.92
929 3106 1.662044 GTCCTGTTTGCCTTGGCAG 59.338 57.895 14.33 3.14 0.00 4.85
930 3107 0.823356 GTCCTGTTTGCCTTGGCAGA 60.823 55.000 14.33 7.63 0.00 4.26
931 3108 0.106268 TCCTGTTTGCCTTGGCAGAA 60.106 50.000 14.33 9.26 0.00 3.02
933 3110 0.746063 CTGTTTGCCTTGGCAGAACA 59.254 50.000 25.36 25.36 0.00 3.18
934 3111 0.746063 TGTTTGCCTTGGCAGAACAG 59.254 50.000 24.32 0.00 0.00 3.16
966 3150 0.686112 AGAAGAGAGGGCGAAGAGGG 60.686 60.000 0.00 0.00 0.00 4.30
967 3151 1.681486 GAAGAGAGGGCGAAGAGGGG 61.681 65.000 0.00 0.00 0.00 4.79
968 3152 2.042843 GAGAGGGCGAAGAGGGGA 60.043 66.667 0.00 0.00 0.00 4.81
969 3153 2.042435 AGAGGGCGAAGAGGGGAG 60.042 66.667 0.00 0.00 0.00 4.30
970 3154 3.855853 GAGGGCGAAGAGGGGAGC 61.856 72.222 0.00 0.00 0.00 4.70
971 3155 4.722535 AGGGCGAAGAGGGGAGCA 62.723 66.667 0.00 0.00 0.00 4.26
972 3156 4.168291 GGGCGAAGAGGGGAGCAG 62.168 72.222 0.00 0.00 0.00 4.24
973 3157 4.168291 GGCGAAGAGGGGAGCAGG 62.168 72.222 0.00 0.00 0.00 4.85
974 3158 3.077556 GCGAAGAGGGGAGCAGGA 61.078 66.667 0.00 0.00 0.00 3.86
975 3159 3.087666 GCGAAGAGGGGAGCAGGAG 62.088 68.421 0.00 0.00 0.00 3.69
976 3160 2.430610 CGAAGAGGGGAGCAGGAGG 61.431 68.421 0.00 0.00 0.00 4.30
997 3181 1.573829 GGCAATCGCGAACAGACCAA 61.574 55.000 15.24 0.00 39.92 3.67
1095 3279 1.275421 CCCTCTCTCTCCAAACCCCC 61.275 65.000 0.00 0.00 0.00 5.40
1101 3285 3.646715 CTCCAAACCCCCTCCGCA 61.647 66.667 0.00 0.00 0.00 5.69
1117 3301 2.819595 CAAGTCCGTCCATGGCCG 60.820 66.667 8.54 8.54 0.00 6.13
1124 3308 3.399181 GTCCATGGCCGGTCTCCA 61.399 66.667 7.97 4.30 38.09 3.86
1145 3329 4.290459 CCACCTTAAACCCTAACCTAACCT 59.710 45.833 0.00 0.00 0.00 3.50
1146 3330 5.488561 CCACCTTAAACCCTAACCTAACCTA 59.511 44.000 0.00 0.00 0.00 3.08
1147 3331 6.012596 CCACCTTAAACCCTAACCTAACCTAA 60.013 42.308 0.00 0.00 0.00 2.69
1148 3332 6.881065 CACCTTAAACCCTAACCTAACCTAAC 59.119 42.308 0.00 0.00 0.00 2.34
1149 3333 6.012508 ACCTTAAACCCTAACCTAACCTAACC 60.013 42.308 0.00 0.00 0.00 2.85
1150 3334 6.216251 CCTTAAACCCTAACCTAACCTAACCT 59.784 42.308 0.00 0.00 0.00 3.50
1151 3335 5.509832 AAACCCTAACCTAACCTAACCTG 57.490 43.478 0.00 0.00 0.00 4.00
1152 3336 4.151943 ACCCTAACCTAACCTAACCTGT 57.848 45.455 0.00 0.00 0.00 4.00
1153 3337 3.842436 ACCCTAACCTAACCTAACCTGTG 59.158 47.826 0.00 0.00 0.00 3.66
1206 3390 4.096003 GGCGGGTAAGCAGCCTGA 62.096 66.667 6.51 0.00 46.83 3.86
1208 3392 1.674322 GCGGGTAAGCAGCCTGAAA 60.674 57.895 0.00 0.00 40.40 2.69
1209 3393 1.032114 GCGGGTAAGCAGCCTGAAAT 61.032 55.000 0.00 0.00 40.40 2.17
1210 3394 1.017387 CGGGTAAGCAGCCTGAAATC 58.983 55.000 0.00 0.00 40.40 2.17
1212 3396 2.019984 GGGTAAGCAGCCTGAAATCTG 58.980 52.381 0.00 0.00 39.38 2.90
1214 3398 2.421424 GGTAAGCAGCCTGAAATCTGTG 59.579 50.000 0.00 0.00 33.09 3.66
1215 3399 2.283145 AAGCAGCCTGAAATCTGTGT 57.717 45.000 0.00 0.00 33.09 3.72
1216 3400 3.423539 AAGCAGCCTGAAATCTGTGTA 57.576 42.857 0.00 0.00 33.09 2.90
1217 3401 3.423539 AGCAGCCTGAAATCTGTGTAA 57.576 42.857 0.00 0.00 33.09 2.41
1223 3422 6.507023 CAGCCTGAAATCTGTGTAACTTTTT 58.493 36.000 0.00 0.00 38.04 1.94
1260 3476 5.979993 TGTTTGATTGATTGATGGGATTGG 58.020 37.500 0.00 0.00 0.00 3.16
1268 3486 0.113972 TGATGGGATTGGTTGGTGCA 59.886 50.000 0.00 0.00 0.00 4.57
1475 3705 3.768922 GCAGGCCTGACTCGCTCT 61.769 66.667 37.21 0.00 0.00 4.09
1477 3707 1.294780 CAGGCCTGACTCGCTCTTT 59.705 57.895 29.88 0.00 0.00 2.52
1482 3713 1.410882 GCCTGACTCGCTCTTTAGGAT 59.589 52.381 0.00 0.00 0.00 3.24
1483 3714 2.159028 GCCTGACTCGCTCTTTAGGATT 60.159 50.000 0.00 0.00 0.00 3.01
1497 3728 8.417884 GCTCTTTAGGATTCACTAGTACTGAAT 58.582 37.037 5.39 7.09 40.38 2.57
1512 3746 1.869132 GAATTCACACATGCGCCGC 60.869 57.895 4.18 0.00 0.00 6.53
1520 3754 3.945434 CATGCGCCGCTGGATGTC 61.945 66.667 11.67 0.00 33.50 3.06
1525 3759 4.899239 GCCGCTGGATGTCGGGAG 62.899 72.222 2.78 0.00 45.37 4.30
1570 3804 7.475015 TCTGCTTGAATGAATAATGTAGCAAC 58.525 34.615 0.00 0.00 0.00 4.17
1571 3805 7.337689 TCTGCTTGAATGAATAATGTAGCAACT 59.662 33.333 0.00 0.00 0.00 3.16
1572 3806 8.504812 TGCTTGAATGAATAATGTAGCAACTA 57.495 30.769 0.00 0.00 0.00 2.24
1573 3807 8.615211 TGCTTGAATGAATAATGTAGCAACTAG 58.385 33.333 0.00 0.00 0.00 2.57
1574 3808 7.589221 GCTTGAATGAATAATGTAGCAACTAGC 59.411 37.037 0.00 0.00 46.19 3.42
1630 3865 2.421619 GCTATGCCTGGCTGATAAGAC 58.578 52.381 21.03 0.00 0.00 3.01
1639 3874 2.086869 GGCTGATAAGACTTTGCTGCA 58.913 47.619 0.00 0.00 0.00 4.41
1661 3896 7.604549 TGCATTTTGTCTATGTGATTGTGATT 58.395 30.769 0.00 0.00 0.00 2.57
1662 3897 7.542824 TGCATTTTGTCTATGTGATTGTGATTG 59.457 33.333 0.00 0.00 0.00 2.67
1663 3898 7.543172 GCATTTTGTCTATGTGATTGTGATTGT 59.457 33.333 0.00 0.00 0.00 2.71
1664 3899 8.856247 CATTTTGTCTATGTGATTGTGATTGTG 58.144 33.333 0.00 0.00 0.00 3.33
1665 3900 7.742556 TTTGTCTATGTGATTGTGATTGTGA 57.257 32.000 0.00 0.00 0.00 3.58
1666 3901 7.926674 TTGTCTATGTGATTGTGATTGTGAT 57.073 32.000 0.00 0.00 0.00 3.06
1723 3960 1.169661 TTGTGTGGCGACATGTTCCC 61.170 55.000 4.39 11.01 46.14 3.97
1740 3977 4.020573 TGTTCCCGAGTTTCTGTCATATGT 60.021 41.667 1.90 0.00 0.00 2.29
1790 4336 3.605486 GTCGATTTGCTTCTGTTGAATGC 59.395 43.478 0.00 0.00 0.00 3.56
1837 4388 4.096382 GGTTTGTTTCTCTTTGCTGTCTGA 59.904 41.667 0.00 0.00 0.00 3.27
1858 4743 8.414778 GTCTGACATACTAGCTGTTATTTAGGT 58.585 37.037 2.24 0.00 0.00 3.08
1859 4744 8.978472 TCTGACATACTAGCTGTTATTTAGGTT 58.022 33.333 0.00 0.00 0.00 3.50
1911 4798 6.798427 TCAGCCTATAAGTGTCTGAGATTT 57.202 37.500 0.00 0.00 31.07 2.17
1917 4804 7.492524 CCTATAAGTGTCTGAGATTTGTGCTA 58.507 38.462 0.00 0.00 0.00 3.49
1930 4817 6.582636 AGATTTGTGCTATCGGTTAGATTGA 58.417 36.000 0.00 0.00 40.66 2.57
1932 4819 4.729227 TGTGCTATCGGTTAGATTGACA 57.271 40.909 0.00 0.00 40.66 3.58
1960 4847 5.569355 TCCAAGGCATCTGAAATCAAGTTA 58.431 37.500 0.00 0.00 0.00 2.24
1976 5410 4.756642 TCAAGTTAGTCTGTTTCAGCCATG 59.243 41.667 0.00 0.00 0.00 3.66
2103 5538 8.876275 TTCAGCAATTTCAATATAGGAATTGC 57.124 30.769 19.77 19.77 38.09 3.56
2104 5540 7.436118 TCAGCAATTTCAATATAGGAATTGCC 58.564 34.615 22.33 10.01 38.30 4.52
2158 5594 5.850614 TCCCTACTTATACGAAGGAATTGC 58.149 41.667 0.00 0.00 0.00 3.56
2195 5631 2.355716 CCTTACAGGGCTTTCGATTGGA 60.356 50.000 0.00 0.00 0.00 3.53
2233 5669 5.048504 AGCTCATGACACAATTTAACTGGTG 60.049 40.000 0.00 0.00 37.29 4.17
2250 5687 1.518133 TGCACAAAACACCGCAAGC 60.518 52.632 0.00 0.00 0.00 4.01
2254 5691 3.601685 AAAACACCGCAAGCCCCG 61.602 61.111 0.00 0.00 0.00 5.73
2267 5704 2.342279 CCCCGTTGCAGAACTCGA 59.658 61.111 0.00 0.00 0.00 4.04
2302 5739 1.145819 GCCCAGGATCTCAGCTGAC 59.854 63.158 13.74 2.89 0.00 3.51
2361 5798 2.281484 GCCAGACCAAACGAGCCA 60.281 61.111 0.00 0.00 0.00 4.75
2362 5799 1.896660 GCCAGACCAAACGAGCCAA 60.897 57.895 0.00 0.00 0.00 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 8.000709 TCAGAATCATAAAGCTCCCACAATTAT 58.999 33.333 0.00 0.00 0.00 1.28
14 15 6.189859 TCAGAATCATAAAGCTCCCACAATT 58.810 36.000 0.00 0.00 0.00 2.32
52 53 9.476202 GTTCTTGCAGAACCTAATGTTAAAAAT 57.524 29.630 14.47 0.00 46.68 1.82
53 54 8.865590 GTTCTTGCAGAACCTAATGTTAAAAA 57.134 30.769 14.47 0.00 46.68 1.94
144 146 6.894682 TGCAAGGGTTAGTATATCAACATCA 58.105 36.000 0.00 0.00 0.00 3.07
167 169 4.869297 TGTCTGCAAAAGGTTCAATGTTTG 59.131 37.500 0.00 0.00 34.74 2.93
214 216 1.351017 ACACCATCACCTCGGACAAAT 59.649 47.619 0.00 0.00 0.00 2.32
226 228 4.101585 GGAGAGACCAATATGACACCATCA 59.898 45.833 0.00 0.00 39.21 3.07
301 303 2.163613 CGCACACTACTCATAGTCCACA 59.836 50.000 0.00 0.00 39.80 4.17
304 306 3.505464 AACGCACACTACTCATAGTCC 57.495 47.619 0.00 0.00 39.80 3.85
327 329 1.954382 CAATCCATGTCATCTGCTGGG 59.046 52.381 0.00 0.00 0.00 4.45
328 330 2.651455 ACAATCCATGTCATCTGCTGG 58.349 47.619 0.00 0.00 37.96 4.85
344 346 2.290134 ACTGCAGCAGATGACAGACAAT 60.290 45.455 29.70 0.00 36.87 2.71
394 398 6.544197 TGTTGTTACACAATTGTACCATGACT 59.456 34.615 11.53 0.00 40.59 3.41
397 401 7.199766 AGTTGTTGTTACACAATTGTACCATG 58.800 34.615 11.53 0.77 40.59 3.66
401 405 6.787225 TGGAGTTGTTGTTACACAATTGTAC 58.213 36.000 11.53 6.90 40.59 2.90
419 424 5.850557 TGTGAATTCAAACACATGGAGTT 57.149 34.783 10.35 0.00 41.19 3.01
448 454 2.038557 GGAGTAGAAGAAACTGGCACCA 59.961 50.000 0.00 0.00 0.00 4.17
466 472 7.042456 CCAGAACGATATTAGTTTGACATGGAG 60.042 40.741 0.00 0.00 31.14 3.86
467 473 6.761242 CCAGAACGATATTAGTTTGACATGGA 59.239 38.462 0.00 0.00 31.14 3.41
485 523 2.482721 GACCACACATTAACCCAGAACG 59.517 50.000 0.00 0.00 0.00 3.95
489 527 3.253188 CACAAGACCACACATTAACCCAG 59.747 47.826 0.00 0.00 0.00 4.45
493 531 3.980646 TGCACAAGACCACACATTAAC 57.019 42.857 0.00 0.00 0.00 2.01
499 537 1.267806 CCTGATTGCACAAGACCACAC 59.732 52.381 0.00 0.00 0.00 3.82
508 546 0.689055 AGAGCACTCCTGATTGCACA 59.311 50.000 11.38 0.00 39.16 4.57
510 548 0.978907 TCAGAGCACTCCTGATTGCA 59.021 50.000 11.38 0.00 39.16 4.08
516 554 4.502950 GGAATAGGATTCAGAGCACTCCTG 60.503 50.000 0.26 0.00 38.56 3.86
518 556 3.244387 GGGAATAGGATTCAGAGCACTCC 60.244 52.174 1.90 0.00 0.00 3.85
541 583 3.194272 AAGCGCACTTTCGGTTGCC 62.194 57.895 11.47 0.00 46.53 4.52
542 584 2.331451 AAGCGCACTTTCGGTTGC 59.669 55.556 11.47 0.00 46.53 4.17
546 588 1.369209 CACACAAGCGCACTTTCGG 60.369 57.895 11.47 0.00 32.29 4.30
549 591 0.311790 CCATCACACAAGCGCACTTT 59.688 50.000 11.47 0.00 32.29 2.66
550 592 0.819259 ACCATCACACAAGCGCACTT 60.819 50.000 11.47 0.00 36.19 3.16
551 593 1.227943 ACCATCACACAAGCGCACT 60.228 52.632 11.47 0.00 0.00 4.40
552 594 1.081906 CACCATCACACAAGCGCAC 60.082 57.895 11.47 0.00 0.00 5.34
557 599 5.478407 TGTACTCATACACCATCACACAAG 58.522 41.667 0.00 0.00 36.34 3.16
558 600 5.476091 TGTACTCATACACCATCACACAA 57.524 39.130 0.00 0.00 36.34 3.33
559 601 5.675684 ATGTACTCATACACCATCACACA 57.324 39.130 0.00 0.00 44.11 3.72
560 602 7.710907 ACATAATGTACTCATACACCATCACAC 59.289 37.037 0.00 0.00 44.11 3.82
561 603 7.791029 ACATAATGTACTCATACACCATCACA 58.209 34.615 0.00 0.00 44.11 3.58
562 604 8.662781 AACATAATGTACTCATACACCATCAC 57.337 34.615 0.00 0.00 44.11 3.06
564 606 8.559536 CCAAACATAATGTACTCATACACCATC 58.440 37.037 0.00 0.00 44.11 3.51
565 607 8.271458 TCCAAACATAATGTACTCATACACCAT 58.729 33.333 0.00 0.00 44.11 3.55
567 609 8.395633 GTTCCAAACATAATGTACTCATACACC 58.604 37.037 0.00 0.00 44.11 4.16
568 610 8.941977 TGTTCCAAACATAATGTACTCATACAC 58.058 33.333 0.00 0.00 39.19 2.90
569 611 9.508642 TTGTTCCAAACATAATGTACTCATACA 57.491 29.630 0.00 0.00 42.37 2.29
585 651 8.227119 GCACCAATTACATATTTTGTTCCAAAC 58.773 33.333 0.00 0.00 39.87 2.93
586 652 7.933577 TGCACCAATTACATATTTTGTTCCAAA 59.066 29.630 0.00 0.00 39.87 3.28
588 654 6.997655 TGCACCAATTACATATTTTGTTCCA 58.002 32.000 0.00 0.00 39.87 3.53
593 659 6.866480 ACCTCTGCACCAATTACATATTTTG 58.134 36.000 0.00 0.00 0.00 2.44
600 666 3.561143 ACAAACCTCTGCACCAATTACA 58.439 40.909 0.00 0.00 0.00 2.41
601 667 5.699097 TTACAAACCTCTGCACCAATTAC 57.301 39.130 0.00 0.00 0.00 1.89
602 668 6.716934 TTTTACAAACCTCTGCACCAATTA 57.283 33.333 0.00 0.00 0.00 1.40
604 670 5.279456 GGATTTTACAAACCTCTGCACCAAT 60.279 40.000 0.00 0.00 0.00 3.16
657 723 0.461693 GCTCGAGCATTCAGGCTTCT 60.462 55.000 31.91 0.00 45.99 2.85
661 727 1.211818 CTACGCTCGAGCATTCAGGC 61.212 60.000 34.69 8.60 42.21 4.85
662 728 0.101399 ACTACGCTCGAGCATTCAGG 59.899 55.000 34.69 20.43 42.21 3.86
665 731 2.981140 GGATAACTACGCTCGAGCATTC 59.019 50.000 34.69 16.04 42.21 2.67
666 732 2.361119 TGGATAACTACGCTCGAGCATT 59.639 45.455 34.69 23.56 42.21 3.56
667 733 1.954382 TGGATAACTACGCTCGAGCAT 59.046 47.619 34.69 24.98 42.21 3.79
669 735 2.226912 AGATGGATAACTACGCTCGAGC 59.773 50.000 27.64 27.64 37.78 5.03
670 736 3.749088 AGAGATGGATAACTACGCTCGAG 59.251 47.826 8.45 8.45 0.00 4.04
671 737 3.741249 AGAGATGGATAACTACGCTCGA 58.259 45.455 0.00 0.00 0.00 4.04
672 738 4.451435 TGTAGAGATGGATAACTACGCTCG 59.549 45.833 0.00 0.00 38.28 5.03
673 739 5.618195 GCTGTAGAGATGGATAACTACGCTC 60.618 48.000 0.00 0.00 38.28 5.03
674 740 4.216687 GCTGTAGAGATGGATAACTACGCT 59.783 45.833 0.00 0.00 38.28 5.07
676 742 5.690997 TGCTGTAGAGATGGATAACTACG 57.309 43.478 0.00 0.00 38.28 3.51
677 743 8.894768 AAAATGCTGTAGAGATGGATAACTAC 57.105 34.615 0.00 0.00 36.68 2.73
678 744 9.330063 CAAAAATGCTGTAGAGATGGATAACTA 57.670 33.333 0.00 0.00 0.00 2.24
680 746 8.213518 TCAAAAATGCTGTAGAGATGGATAAC 57.786 34.615 0.00 0.00 0.00 1.89
681 747 8.806429 TTCAAAAATGCTGTAGAGATGGATAA 57.194 30.769 0.00 0.00 0.00 1.75
682 748 8.806429 TTTCAAAAATGCTGTAGAGATGGATA 57.194 30.769 0.00 0.00 0.00 2.59
683 749 7.707624 TTTCAAAAATGCTGTAGAGATGGAT 57.292 32.000 0.00 0.00 0.00 3.41
703 1089 9.825109 TCACGGAACAACAGATATATTATTTCA 57.175 29.630 0.00 0.00 0.00 2.69
710 1096 7.228706 GGGAATTTCACGGAACAACAGATATAT 59.771 37.037 0.00 0.00 0.00 0.86
712 1098 5.357032 GGGAATTTCACGGAACAACAGATAT 59.643 40.000 0.00 0.00 0.00 1.63
713 1099 4.698304 GGGAATTTCACGGAACAACAGATA 59.302 41.667 0.00 0.00 0.00 1.98
714 1100 3.506067 GGGAATTTCACGGAACAACAGAT 59.494 43.478 0.00 0.00 0.00 2.90
715 1101 2.882137 GGGAATTTCACGGAACAACAGA 59.118 45.455 0.00 0.00 0.00 3.41
716 1102 2.030274 GGGGAATTTCACGGAACAACAG 60.030 50.000 0.00 0.00 0.00 3.16
726 2606 4.519906 TTCTATGGGAGGGGAATTTCAC 57.480 45.455 0.00 0.00 0.00 3.18
733 2613 1.564348 GTGCTTTTCTATGGGAGGGGA 59.436 52.381 0.00 0.00 0.00 4.81
738 2618 6.039270 CGAATATTTGGTGCTTTTCTATGGGA 59.961 38.462 0.00 0.00 0.00 4.37
739 2619 6.039270 TCGAATATTTGGTGCTTTTCTATGGG 59.961 38.462 2.78 0.00 0.00 4.00
745 2910 6.564328 AGGAATCGAATATTTGGTGCTTTTC 58.436 36.000 2.78 0.00 0.00 2.29
747 2912 7.012421 GTCTAGGAATCGAATATTTGGTGCTTT 59.988 37.037 2.78 0.00 0.00 3.51
748 2913 6.483640 GTCTAGGAATCGAATATTTGGTGCTT 59.516 38.462 2.78 0.00 0.00 3.91
750 2915 5.179555 GGTCTAGGAATCGAATATTTGGTGC 59.820 44.000 2.78 0.00 0.00 5.01
835 3012 3.633986 CACTTGCCCAGGAGAATATTTCC 59.366 47.826 8.01 8.01 34.83 3.13
856 3033 5.103728 TCCTATCAATTTATCCCACTTGGCA 60.104 40.000 0.00 0.00 0.00 4.92
857 3034 5.385198 TCCTATCAATTTATCCCACTTGGC 58.615 41.667 0.00 0.00 0.00 4.52
858 3035 6.006449 CCTCCTATCAATTTATCCCACTTGG 58.994 44.000 0.00 0.00 0.00 3.61
859 3036 6.841601 TCCTCCTATCAATTTATCCCACTTG 58.158 40.000 0.00 0.00 0.00 3.16
860 3037 7.465900 TTCCTCCTATCAATTTATCCCACTT 57.534 36.000 0.00 0.00 0.00 3.16
861 3038 6.466470 GCTTCCTCCTATCAATTTATCCCACT 60.466 42.308 0.00 0.00 0.00 4.00
862 3039 5.707764 GCTTCCTCCTATCAATTTATCCCAC 59.292 44.000 0.00 0.00 0.00 4.61
886 3063 0.318107 CTTTCAACTTGCCTGTGCGG 60.318 55.000 0.00 0.00 41.78 5.69
887 3064 0.381801 ACTTTCAACTTGCCTGTGCG 59.618 50.000 0.00 0.00 41.78 5.34
926 3103 1.402194 CGGTCTCTCTGTCTGTTCTGC 60.402 57.143 0.00 0.00 0.00 4.26
928 3105 2.039216 TCTCGGTCTCTCTGTCTGTTCT 59.961 50.000 0.00 0.00 0.00 3.01
929 3106 2.428491 TCTCGGTCTCTCTGTCTGTTC 58.572 52.381 0.00 0.00 0.00 3.18
930 3107 2.570415 TCTCGGTCTCTCTGTCTGTT 57.430 50.000 0.00 0.00 0.00 3.16
931 3108 2.039216 TCTTCTCGGTCTCTCTGTCTGT 59.961 50.000 0.00 0.00 0.00 3.41
933 3110 2.569853 TCTCTTCTCGGTCTCTCTGTCT 59.430 50.000 0.00 0.00 0.00 3.41
934 3111 2.936498 CTCTCTTCTCGGTCTCTCTGTC 59.064 54.545 0.00 0.00 0.00 3.51
966 3150 1.148048 GATTGCCTCCTCCTGCTCC 59.852 63.158 0.00 0.00 0.00 4.70
967 3151 1.227497 CGATTGCCTCCTCCTGCTC 60.227 63.158 0.00 0.00 0.00 4.26
968 3152 2.906458 CGATTGCCTCCTCCTGCT 59.094 61.111 0.00 0.00 0.00 4.24
969 3153 2.899339 GCGATTGCCTCCTCCTGC 60.899 66.667 0.00 0.00 33.98 4.85
970 3154 2.578163 TTCGCGATTGCCTCCTCCTG 62.578 60.000 10.88 0.00 38.08 3.86
971 3155 2.359169 TTCGCGATTGCCTCCTCCT 61.359 57.895 10.88 0.00 38.08 3.69
972 3156 2.174319 GTTCGCGATTGCCTCCTCC 61.174 63.158 10.88 0.00 38.08 4.30
973 3157 1.424493 CTGTTCGCGATTGCCTCCTC 61.424 60.000 10.88 0.00 38.08 3.71
974 3158 1.448540 CTGTTCGCGATTGCCTCCT 60.449 57.895 10.88 0.00 38.08 3.69
975 3159 1.447838 TCTGTTCGCGATTGCCTCC 60.448 57.895 10.88 0.00 38.08 4.30
976 3160 1.696832 GGTCTGTTCGCGATTGCCTC 61.697 60.000 10.88 0.00 38.08 4.70
997 3181 2.034066 CTTGGTCACGCCCATGGT 59.966 61.111 11.73 0.00 33.60 3.55
1053 3237 0.685458 GGAGGCTTACGAGGTGGGTA 60.685 60.000 0.00 0.00 0.00 3.69
1095 3279 1.811266 CATGGACGGACTTGCGGAG 60.811 63.158 0.00 0.00 0.00 4.63
1108 3292 3.399181 GTGGAGACCGGCCATGGA 61.399 66.667 18.40 0.00 37.81 3.41
1117 3301 3.307975 GGTTAGGGTTTAAGGTGGAGACC 60.308 52.174 0.00 0.00 43.52 3.85
1124 3308 6.012508 GGTTAGGTTAGGTTAGGGTTTAAGGT 60.013 42.308 0.00 0.00 0.00 3.50
1145 3329 0.753867 TCGCAGGAACACACAGGTTA 59.246 50.000 0.00 0.00 0.00 2.85
1146 3330 0.108585 ATCGCAGGAACACACAGGTT 59.891 50.000 0.00 0.00 0.00 3.50
1147 3331 0.108585 AATCGCAGGAACACACAGGT 59.891 50.000 0.00 0.00 0.00 4.00
1148 3332 1.197721 GAAATCGCAGGAACACACAGG 59.802 52.381 0.00 0.00 0.00 4.00
1149 3333 1.872952 TGAAATCGCAGGAACACACAG 59.127 47.619 0.00 0.00 0.00 3.66
1150 3334 1.872952 CTGAAATCGCAGGAACACACA 59.127 47.619 0.00 0.00 32.26 3.72
1151 3335 2.601481 CTGAAATCGCAGGAACACAC 57.399 50.000 0.00 0.00 32.26 3.82
1223 3422 2.660572 TCAAACAAGCTTACAGGGCAA 58.339 42.857 0.00 0.00 0.00 4.52
1225 3424 3.255642 TCAATCAAACAAGCTTACAGGGC 59.744 43.478 0.00 0.00 0.00 5.19
1475 3705 9.871238 GTGAATTCAGTACTAGTGAATCCTAAA 57.129 33.333 16.33 2.76 44.92 1.85
1477 3707 8.467598 GTGTGAATTCAGTACTAGTGAATCCTA 58.532 37.037 16.33 6.50 44.92 2.94
1482 3713 6.368791 GCATGTGTGAATTCAGTACTAGTGAA 59.631 38.462 8.80 8.49 41.31 3.18
1483 3714 5.869344 GCATGTGTGAATTCAGTACTAGTGA 59.131 40.000 8.80 0.00 0.00 3.41
1497 3728 3.725459 CAGCGGCGCATGTGTGAA 61.725 61.111 35.02 0.00 0.00 3.18
1512 3746 2.415010 CGAGCTCCCGACATCCAG 59.585 66.667 8.47 0.00 0.00 3.86
1520 3754 0.665670 CTGTATGATGCGAGCTCCCG 60.666 60.000 8.47 0.00 0.00 5.14
1525 3759 3.252215 AGAGAGTACTGTATGATGCGAGC 59.748 47.826 0.00 0.00 0.00 5.03
1570 3804 1.485838 CCGCAGACGCATCTTGCTAG 61.486 60.000 3.46 0.00 42.25 3.42
1571 3805 1.519234 CCGCAGACGCATCTTGCTA 60.519 57.895 3.46 0.00 42.25 3.49
1572 3806 2.786539 TTCCGCAGACGCATCTTGCT 62.787 55.000 3.46 0.00 42.25 3.91
1573 3807 1.709147 ATTCCGCAGACGCATCTTGC 61.709 55.000 0.00 0.00 40.69 4.01
1574 3808 0.302890 GATTCCGCAGACGCATCTTG 59.697 55.000 0.00 0.00 38.40 3.02
1575 3809 1.148157 CGATTCCGCAGACGCATCTT 61.148 55.000 0.00 0.00 38.40 2.40
1576 3810 1.589993 CGATTCCGCAGACGCATCT 60.590 57.895 0.00 0.00 38.40 2.90
1630 3865 5.463286 TCACATAGACAAAATGCAGCAAAG 58.537 37.500 0.00 0.00 0.00 2.77
1639 3874 8.795513 TCACAATCACAATCACATAGACAAAAT 58.204 29.630 0.00 0.00 0.00 1.82
1723 3960 2.282555 CCGCACATATGACAGAAACTCG 59.717 50.000 10.38 0.00 0.00 4.18
1790 4336 0.171679 TGCAGCAATGAAAGCCATCG 59.828 50.000 0.00 0.00 33.53 3.84
1862 4747 8.952278 AGAAAACAGTGTGTATCAACTGTAAAA 58.048 29.630 8.73 0.00 37.40 1.52
1863 4748 8.500753 AGAAAACAGTGTGTATCAACTGTAAA 57.499 30.769 8.73 0.00 37.40 2.01
1864 4749 7.766738 TGAGAAAACAGTGTGTATCAACTGTAA 59.233 33.333 8.73 0.00 37.40 2.41
1865 4750 7.269316 TGAGAAAACAGTGTGTATCAACTGTA 58.731 34.615 8.73 0.00 37.40 2.74
1875 4762 2.717639 AGGCTGAGAAAACAGTGTGT 57.282 45.000 0.00 0.00 39.73 3.72
1908 4795 6.112734 TGTCAATCTAACCGATAGCACAAAT 58.887 36.000 0.00 0.00 0.00 2.32
1911 4798 4.729227 TGTCAATCTAACCGATAGCACA 57.271 40.909 0.00 0.00 0.00 4.57
1917 4804 7.445402 CCTTGGAATTATGTCAATCTAACCGAT 59.555 37.037 0.00 0.00 0.00 4.18
1930 4817 6.608405 TGATTTCAGATGCCTTGGAATTATGT 59.392 34.615 0.00 0.00 0.00 2.29
1932 4819 7.343833 ACTTGATTTCAGATGCCTTGGAATTAT 59.656 33.333 0.00 0.00 0.00 1.28
1960 4847 2.107204 AGTTCCATGGCTGAAACAGACT 59.893 45.455 6.96 0.00 40.76 3.24
2000 5434 1.015607 CCGCCGTACCAGTAAACCAC 61.016 60.000 0.00 0.00 0.00 4.16
2002 5436 2.102438 GCCGCCGTACCAGTAAACC 61.102 63.158 0.00 0.00 0.00 3.27
2003 5437 2.102438 GGCCGCCGTACCAGTAAAC 61.102 63.158 0.00 0.00 0.00 2.01
2004 5438 2.265424 GGCCGCCGTACCAGTAAA 59.735 61.111 0.00 0.00 0.00 2.01
2005 5439 4.132441 CGGCCGCCGTACCAGTAA 62.132 66.667 24.08 0.00 42.73 2.24
2103 5538 5.118286 GGCAATTCCTATGTTTTTGGATGG 58.882 41.667 0.00 0.00 0.00 3.51
2104 5540 5.104817 AGGGCAATTCCTATGTTTTTGGATG 60.105 40.000 0.00 0.00 34.92 3.51
2188 5624 4.905295 GCTTTGTTTTGCAAAATCCAATCG 59.095 37.500 26.24 18.69 45.35 3.34
2195 5631 5.585445 TGTCATGAGCTTTGTTTTGCAAAAT 59.415 32.000 26.24 10.36 45.35 1.82
2213 5649 4.681025 GTGCACCAGTTAAATTGTGTCATG 59.319 41.667 5.22 0.00 0.00 3.07
2233 5669 2.237066 GGCTTGCGGTGTTTTGTGC 61.237 57.895 0.00 0.00 0.00 4.57
2250 5687 0.673644 ATTCGAGTTCTGCAACGGGG 60.674 55.000 0.00 0.00 37.61 5.73
2254 5691 3.189287 ACCATGAATTCGAGTTCTGCAAC 59.811 43.478 19.74 0.00 0.00 4.17
2267 5704 2.311542 TGGGCTTCTACCACCATGAATT 59.688 45.455 0.00 0.00 31.83 2.17
2302 5739 3.200593 GGTGAGCGATGGCAGCAG 61.201 66.667 2.73 0.00 43.41 4.24
2361 5798 1.402787 CCCTTTGCTGAACACCAGTT 58.597 50.000 0.00 0.00 44.71 3.16
2362 5799 1.109323 GCCCTTTGCTGAACACCAGT 61.109 55.000 0.00 0.00 44.71 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.